Lsi06G011320 (gene) Bottle gourd (USVL1VR-Ls) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGAGTTTAAACGCCGCCATGAACAACTACTCAACCTTGAGCTGCTTCTTGAACCATCTTCATCTTCTAATTTCTCAGCTCCTTTGAGTCCTCCAAATTGTGAGGCAGCTGCAACTGCTACTACTGCAAGGGTTTTCTCATGCAACTATTGCAAGAGGAAATTTTATAGCTCACAAGCGTTGGGAGGTCACCAAAATGCTCATAAATTGGAGAGAACTTTGGCAAAGAAGAGCAGAGAGATTAGAGGTTACAGAGGAGATTATGATGATCATCACAGTACAGCCAATAATATTATGATGATTAATAATAATTCAAGCCATTTGTGGAATAATAATGTTGAGATACCTATAATTACAACAACACCACCACCTGATCATCTACTCAGTGGTCCACGTGGCATTCCAGCTGATCATCATCATCATCATCATCAAGCTGATCATGATATTGGCCATCTTGACTTGTCTTTAAGGCTCTGA ATGGAGTTTAAACGCCGCCATGAACAACTACTCAACCTTGAGCTGCTTCTTGAACCATCTTCATCTTCTAATTTCTCAGCTCCTTTGAGTCCTCCAAATTGTGAGGCAGCTGCAACTGCTACTACTGCAAGGGTTTTCTCATGCAACTATTGCAAGAGGAAATTTTATAGCTCACAAGCGTTGGGAGGTCACCAAAATGCTCATAAATTGGAGAGAACTTTGGCAAAGAAGAGCAGAGAGATTAGAGGTTACAGAGGAGATTATGATGATCATCACAGTACAGCCAATAATATTATGATGATTAATAATAATTCAAGCCATTTGTGGAATAATAATGTTGAGATACCTATAATTACAACAACACCACCACCTGATCATCTACTCAGTGGTCCACGTGGCATTCCAGCTGATCATCATCATCATCATCATCAAGCTGATCATGATATTGGCCATCTTGACTTGTCTTTAAGGCTCTGA ATGGAGTTTAAACGCCGCCATGAACAACTACTCAACCTTGAGCTGCTTCTTGAACCATCTTCATCTTCTAATTTCTCAGCTCCTTTGAGTCCTCCAAATTGTGAGGCAGCTGCAACTGCTACTACTGCAAGGGTTTTCTCATGCAACTATTGCAAGAGGAAATTTTATAGCTCACAAGCGTTGGGAGGTCACCAAAATGCTCATAAATTGGAGAGAACTTTGGCAAAGAAGAGCAGAGAGATTAGAGGTTACAGAGGAGATTATGATGATCATCACAGTACAGCCAATAATATTATGATGATTAATAATAATTCAAGCCATTTGTGGAATAATAATGTTGAGATACCTATAATTACAACAACACCACCACCTGATCATCTACTCAGTGGTCCACGTGGCATTCCAGCTGATCATCATCATCATCATCATCAAGCTGATCATGATATTGGCCATCTTGACTTGTCTTTAAGGCTCTGA MEFKRRHEQLLNLELLLEPSSSSNFSAPLSPPNCEAAATATTARVFSCNYCKRKFYSSQALGGHQNAHKLERTLAKKSREIRGYRGDYDDHHSTANNIMMINNNSSHLWNNNVEIPIITTTPPPDHLLSGPRGIPADHHHHHHQADHDIGHLDLSLRL Homology
BLAST of Lsi06G011320 vs. ExPASy Swiss-Prot
Match: Q39261 (Zinc finger protein 2 OS=Arabidopsis thaliana OX=3702 GN=ZFP2 PE=1 SV=1) HSP 1 Score: 90.9 bits (224), Expect = 1.4e-17 Identity = 48/71 (67.61%), Postives = 57/71 (80.28%), Query Frame = 0
BLAST of Lsi06G011320 vs. ExPASy Swiss-Prot
Match: Q39263 (Zinc finger protein 4 OS=Arabidopsis thaliana OX=3702 GN=ZFP4 PE=2 SV=2) HSP 1 Score: 72.4 bits (176), Expect = 5.2e-12 Identity = 46/99 (46.46%), Postives = 61/99 (61.62%), Query Frame = 0
BLAST of Lsi06G011320 vs. ExPASy Swiss-Prot
Match: Q42485 (Zinc finger protein 1 OS=Arabidopsis thaliana OX=3702 GN=ZFP1 PE=2 SV=1) HSP 1 Score: 69.7 bits (169), Expect = 3.3e-11 Identity = 31/36 (86.11%), Postives = 34/36 (94.44%), Query Frame = 0
BLAST of Lsi06G011320 vs. ExPASy Swiss-Prot
Match: Q39262 (Zinc finger protein 3 OS=Arabidopsis thaliana OX=3702 GN=ZFP3 PE=1 SV=1) HSP 1 Score: 69.3 bits (168), Expect = 4.4e-11 Identity = 48/136 (35.29%), Postives = 64/136 (47.06%), Query Frame = 0
BLAST of Lsi06G011320 vs. ExPASy Swiss-Prot
Match: Q39266 (Zinc finger protein 7 OS=Arabidopsis thaliana OX=3702 GN=ZFP7 PE=1 SV=1) HSP 1 Score: 66.2 bits (160), Expect = 3.7e-10 Identity = 44/124 (35.48%), Postives = 63/124 (50.81%), Query Frame = 0
BLAST of Lsi06G011320 vs. ExPASy TrEMBL
Match: A0A6J1JAI3 (zinc finger protein 7-like OS=Cucurbita maxima OX=3661 GN=LOC111485036 PE=4 SV=1) HSP 1 Score: 162.2 bits (409), Expect = 1.8e-36 Identity = 105/166 (63.25%), Postives = 116/166 (69.88%), Query Frame = 0
BLAST of Lsi06G011320 vs. ExPASy TrEMBL
Match: A0A6J1E5I0 (zinc finger protein 7 OS=Cucurbita moschata OX=3662 GN=LOC111429682 PE=4 SV=1) HSP 1 Score: 160.6 bits (405), Expect = 5.3e-36 Identity = 104/166 (62.65%), Postives = 116/166 (69.88%), Query Frame = 0
BLAST of Lsi06G011320 vs. ExPASy TrEMBL
Match: A0A6J1KNT5 (zinc finger protein 2-like OS=Cucurbita maxima OX=3661 GN=LOC111497321 PE=4 SV=1) HSP 1 Score: 138.3 bits (347), Expect = 2.8e-29 Identity = 95/173 (54.91%), Postives = 110/173 (63.58%), Query Frame = 0
BLAST of Lsi06G011320 vs. ExPASy TrEMBL
Match: A0A6J1BYT1 (protein LATE FLOWERING OS=Momordica charantia OX=3673 GN=LOC111006983 PE=4 SV=1) HSP 1 Score: 116.3 bits (290), Expect = 1.1e-22 Identity = 85/164 (51.83%), Postives = 94/164 (57.32%), Query Frame = 0
BLAST of Lsi06G011320 vs. ExPASy TrEMBL
Match: M1BM51 (Zinc finger protein OS=Solanum tuberosum OX=4113 PE=4 SV=1) HSP 1 Score: 99.8 bits (247), Expect = 1.1e-17 Identity = 69/152 (45.39%), Postives = 87/152 (57.24%), Query Frame = 0
BLAST of Lsi06G011320 vs. NCBI nr
Match: XP_038880343.1 (zinc finger protein 3 [Benincasa hispida]) HSP 1 Score: 206.1 bits (523), Expect = 2.3e-49 Identity = 121/161 (75.16%), Postives = 130/161 (80.75%), Query Frame = 0
BLAST of Lsi06G011320 vs. NCBI nr
Match: XP_004146361.1 (zinc finger protein 7 [Cucumis sativus]) HSP 1 Score: 167.2 bits (422), Expect = 1.2e-37 Identity = 110/173 (63.58%), Postives = 122/173 (70.52%), Query Frame = 0
BLAST of Lsi06G011320 vs. NCBI nr
Match: KAG6589714.1 (Zinc finger protein 2, partial [Cucurbita argyrosperma subsp. sororia] >KAG7023394.1 Zinc finger protein 2, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 166.4 bits (420), Expect = 2.0e-37 Identity = 106/166 (63.86%), Postives = 117/166 (70.48%), Query Frame = 0
BLAST of Lsi06G011320 vs. NCBI nr
Match: XP_023516743.1 (zinc finger protein 7-like [Cucurbita pepo subsp. pepo] >XP_023521837.1 zinc finger protein 7-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 164.9 bits (416), Expect = 5.8e-37 Identity = 106/167 (63.47%), Postives = 116/167 (69.46%), Query Frame = 0
BLAST of Lsi06G011320 vs. NCBI nr
Match: XP_022987492.1 (zinc finger protein 7-like [Cucurbita maxima]) HSP 1 Score: 162.2 bits (409), Expect = 3.8e-36 Identity = 105/166 (63.25%), Postives = 116/166 (69.88%), Query Frame = 0
BLAST of Lsi06G011320 vs. TAIR 10
Match: AT5G57520.1 (zinc finger protein 2 ) HSP 1 Score: 90.9 bits (224), Expect = 1.0e-18 Identity = 48/71 (67.61%), Postives = 57/71 (80.28%), Query Frame = 0
BLAST of Lsi06G011320 vs. TAIR 10
Match: AT1G66140.1 (zinc finger protein 4 ) HSP 1 Score: 72.4 bits (176), Expect = 3.7e-13 Identity = 46/99 (46.46%), Postives = 61/99 (61.62%), Query Frame = 0
BLAST of Lsi06G011320 vs. TAIR 10
Match: AT1G80730.1 (zinc-finger protein 1 ) HSP 1 Score: 69.7 bits (169), Expect = 2.4e-12 Identity = 31/36 (86.11%), Postives = 34/36 (94.44%), Query Frame = 0
BLAST of Lsi06G011320 vs. TAIR 10
Match: AT5G25160.1 (zinc finger protein 3 ) HSP 1 Score: 69.3 bits (168), Expect = 3.1e-12 Identity = 48/136 (35.29%), Postives = 64/136 (47.06%), Query Frame = 0
BLAST of Lsi06G011320 vs. TAIR 10
Match: AT5G10970.1 (C2H2 and C2HC zinc fingers superfamily protein ) HSP 1 Score: 68.6 bits (166), Expect = 5.3e-12 Identity = 30/44 (68.18%), Postives = 38/44 (86.36%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
Relationships
The following mRNA feature(s) are a part of this gene:
|