Lsi06G010980 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi06G010980
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	glycine-rich cell wall structural protein 2-like
Location	chr06: 21246521 .. 21246916 (-)
RNA-Seq Expression	Lsi06G010980
Synteny	Lsi06G010980

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCCATCAGGGCTGTTGCCATTGTCGCCTTCCTACTTGGCCTGTCCGTCATTGTATCAGAAAGCCGCGTGGCCAGGATGGACTTGGGCCTCGACCTTGGCAGAGTGGGCCTCGGTGTTGGCACGGGAGTGGGCTTGGGCTTAGGTGGAAGTGGCTCGGGTTCCGGCTCGGGTTCTGGATCTGGGTCTAGCTCTGCTTCCTCATCACAGTCCTCAAGCTCCAGCTCTGGCTCCGACGCTGGGTCGGAAGCCGGTTCGTATGCTGGCTCTTACGCCGGGTCTCGGTCCGGGTCTGGTTCGGGTAGAAACAGAAACGGTGGATCCGGTTCAGGATATGGAGAGGGGCATGGGTACGGCGAGGGGCATGGTTATGGCAGTGGTGGCGAAAACTGA

mRNA sequence

ATGGCTTCCATCAGGGCTGTTGCCATTGTCGCCTTCCTACTTGGCCTGTCCGTCATTGTATCAGAAAGCCGCGTGGCCAGGATGGACTTGGGCCTCGACCTTGGCAGAGTGGGCCTCGGTGTTGGCACGGGAGTGGGCTTGGGCTTAGGTGGAAGTGGCTCGGGTTCCGGCTCGGGTTCTGGATCTGGGTCTAGCTCTGCTTCCTCATCACAGTCCTCAAGCTCCAGCTCTGGCTCCGACGCTGGGTCGGAAGCCGGTTCGTATGCTGGCTCTTACGCCGGGTCTCGGTCCGGGTCTGGTTCGGGTAGAAACAGAAACGGTGGATCCGGTTCAGGATATGGAGAGGGGCATGGGTACGGCGAGGGGCATGGTTATGGCAGTGGTGGCGAAAACTGA

Coding sequence (CDS)

ATGGCTTCCATCAGGGCTGTTGCCATTGTCGCCTTCCTACTTGGCCTGTCCGTCATTGTATCAGAAAGCCGCGTGGCCAGGATGGACTTGGGCCTCGACCTTGGCAGAGTGGGCCTCGGTGTTGGCACGGGAGTGGGCTTGGGCTTAGGTGGAAGTGGCTCGGGTTCCGGCTCGGGTTCTGGATCTGGGTCTAGCTCTGCTTCCTCATCACAGTCCTCAAGCTCCAGCTCTGGCTCCGACGCTGGGTCGGAAGCCGGTTCGTATGCTGGCTCTTACGCCGGGTCTCGGTCCGGGTCTGGTTCGGGTAGAAACAGAAACGGTGGATCCGGTTCAGGATATGGAGAGGGGCATGGGTACGGCGAGGGGCATGGTTATGGCAGTGGTGGCGAAAACTGA

Protein sequence

MASIRAVAIVAFLLGLSVIVSESRVARMDLGLDLGRVGLGVGTGVGLGLGGSGSGSGSGSGSGSSSASSSQSSSSSSGSDAGSEAGSYAGSYAGSRSGSGSGRNRNGGSGSGYGEGHGYGEGHGYGSGGEN

Homology

[Close]

BLAST of Lsi06G010980 vs. ExPASy TrEMBL
Match: A0A1S3B8Y8 (putative glycine-rich cell wall structural protein 1 OS=Cucumis melo OX=3656 GN=LOC103487315 PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 1.1e-34
Identity = 116/140 (82.86%), Postives = 121/140 (86.43%), Query Frame = 0


Query: 1   MASIRAVAIVAFLLGLSVIVSESRVARMDLGLDLGRVGLGVGTGVGLGLGGSGSGSGSGS 60
           MASIR VA+V FLLG+SVIVSESRVAR DLGLDLG +GLGVGTGVGLGL   GSGSG GS
Sbjct: 1   MASIRGVAVVTFLLGVSVIVSESRVARKDLGLDLGGMGLGVGTGVGLGL--DGSGSGFGS 60

Query: 61  GSGSSSASSSQSSSSSSGSDAGSEAGSYAGSYAGSRSGSGSGRNRNGGSGS--------- 120
           G GSSSASSS SSSSSSGSDAGSEAGSYAGSYAGSR+GSGSGRNRNGGSGS         
Sbjct: 61  GPGSSSASSSHSSSSSSGSDAGSEAGSYAGSYAGSRAGSGSGRNRNGGSGSGSGTGNGGE 120

Query: 121 GYGEGHGYGEGHGYGSGGEN 132
           GYGEGHGYGEGHGYG+GGEN
Sbjct: 121 GYGEGHGYGEGHGYGNGGEN 138

[Close]

BLAST of Lsi06G010980 vs. ExPASy TrEMBL
Match: A0A6J1E1T0 (glycine-rich cell wall structural protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC111430015 PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 1.1e-29
Identity = 114/151 (75.50%), Postives = 119/151 (78.81%), Query Frame = 0


Query: 1   MASIRAVAIVAFLLGLSVIVSESRVARMDLGLDLGRVGLGVGTGVGLGLG----GSGSGS 60
           MASIRAV+I+A LL LSVIVSESRVARMDLGLDLG VG+G+GTGVGLGLG    GSGSGS
Sbjct: 1   MASIRAVSILALLLALSVIVSESRVARMDLGLDLGGVGVGIGTGVGLGLGGSGSGSGSGS 60

Query: 61  GSGSGSGSSSASSSQSSSSSSGSDAGSEAGSYAGSYAGSRSGSGSGRNRNGGSGSGYGE- 120
           GSGSGSGSSSASSS SSSSSSGSDAGSEAGSYAGSYA    GSGSGRNRNGGSGSG G  
Sbjct: 61  GSGSGSGSSSASSSHSSSSSSGSDAGSEAGSYAGSYA----GSGSGRNRNGGSGSGSGSG 120

Query: 121 ---------------GHGYGEGHGYGSGGEN 132
                          G GYGEGHGYG+ GEN
Sbjct: 121 SGYGAGSGRGSGSGGGEGYGEGHGYGNDGEN 147

[Close]

BLAST of Lsi06G010980 vs. ExPASy TrEMBL
Match: A0A6J1C497 (putative glycine-rich cell wall structural protein 1 OS=Momordica charantia OX=3673 GN=LOC111007250 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 4.1e-26
Identity = 103/144 (71.53%), Postives = 115/144 (79.86%), Query Frame = 0


Query: 1   MASIRAVAIVAFLLGLS-VIVSESRVARMDLGLDLGRVGLGVGTGVGLGLG---GSGSGS 60
           MA+IR  A+VAF+LGLS  IVSE+RVAR DLG+DLG VG+G+G G+GLG G   GSG+G+
Sbjct: 1   MAAIRCFAVVAFILGLSAAIVSEARVARKDLGIDLGGVGVGLGAGIGLGGGSGSGSGAGA 60

Query: 61  GSGSGSGSSSASSSQSSSSSSGSDAGSEAGSYAGSYAGSRSGSGSGRNRNGGSGS----- 120
           GSGSGSGSSS+SSS SSSSSSGS AGSEAGSYAGSYAGSR+GSGSG NR  GSGS     
Sbjct: 61  GSGSGSGSSSSSSSYSSSSSSGSGAGSEAGSYAGSYAGSRAGSGSGGNRGSGSGSGYGGG 120

Query: 121 -------GYGEGHGYGEGHGYGSG 129
                  GYGEGHGYGEGHGYG G
Sbjct: 121 SGRGSGEGYGEGHGYGEGHGYGGG 144

[Close]

BLAST of Lsi06G010980 vs. ExPASy TrEMBL
Match: A0A0A0LZ57 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G287000 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 2.1e-25
Identity = 98/134 (73.13%), Postives = 104/134 (77.61%), Query Frame = 0


Query: 1   MASIRAVAIVAFLLGLSVIVSESRVARMDLGLDLGRVGLGVGTGVGLGLGGSGSGSGSGS 60
           MASIR+VA+V FLLG+SVIVSESRVAR DLGLDLG VGLGVGTG+GLGLGGSGSGSGSGS
Sbjct: 1   MASIRSVAVVTFLLGVSVIVSESRVARKDLGLDLGGVGLGVGTGMGLGLGGSGSGSGSGS 60

Query: 61  GSGSSSASSSQSSSSSSGSDAGSEAGSYAGSYAGSRSGSGSGRNRNGGSGSGYGEGH--- 120
           GSGSSSAS S S                  SYAGS  GSGSGRNRNGGSGSG G G+   
Sbjct: 61  GSGSSSASLSHS------------------SYAGSYVGSGSGRNRNGGSGSGSGRGNGGE 116

Query: 121 GYGEGHGYGSGGEN 132
           GYGEGHGYG+GGEN
Sbjct: 121 GYGEGHGYGNGGEN 116

[Close]

BLAST of Lsi06G010980 vs. ExPASy TrEMBL
Match: A0A0A0LTK9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G278500 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 4.6e-25
Identity = 103/152 (67.76%), Postives = 114/152 (75.00%), Query Frame = 0


Query: 1   MASIRAVAI-VAFLLGLSVIVSESRVARMDLGLDLGRVGLGVGTGVGLGLG----GSGSG 60
           MASI+++AI V  LL  S I+SE RVAR DLG+DLG VG+G+GTG+GLG+G    GSGSG
Sbjct: 1   MASIKSLAIVVCLLLSFSAILSEGRVARKDLGIDLGGVGVGLGTGIGLGIGGSGSGSGSG 60

Query: 61  SGSGSGSGSSSASSSQSSSSSSGSDAGSEAGSYAGSYAGSRSGSGSGRNRNGGS------ 120
           SGSGSGSGSSS+SSS SSSSSSGS AGSEAGSYAGSYAGSR+GSGSG NRNGGS      
Sbjct: 61  SGSGSGSGSSSSSSSYSSSSSSGSGAGSEAGSYAGSYAGSRAGSGSGGNRNGGSGYGSGY 120

Query: 121 -------------GSGYGEGHGYGEGHGYGSG 129
                        G GYGEGHGYGEG GYG G
Sbjct: 121 GGGSGRGGGSNDNGEGYGEGHGYGEGRGYGGG 152

[Close]

BLAST of Lsi06G010980 vs. NCBI nr
Match: XP_038879815.1 (putative per-hexamer repeat protein 5 [Benincasa hispida])

HSP 1 Score: 161.4 bits (407), Expect = 5.3e-36
Identity = 122/151 (80.79%), Postives = 127/151 (84.11%), Query Frame = 0


Query: 1   MASIRAVAIVAFLLGLSVIVSESRVARMDLGLDLGRVGLGVGTGVGLGLG----GSGSGS 60
           MASIRAV I+AFLLG+SVIVSE RVARM+LGLDLG VGLGVGTGVGLGLG    GSGSGS
Sbjct: 1   MASIRAVTILAFLLGVSVIVSEGRVARMNLGLDLGGVGLGVGTGVGLGLGGSGSGSGSGS 60

Query: 61  GSGSGSGSSSASSSQSSSSSSGSDAGSEAGSYAGSYAGSRSGSGSGRNRNGGSGS----- 120
           GSGSGSGSSSASSS SSSSSSGSDAGSEAGSYAGSYAGSR+GSGSGRNRNGGSGS     
Sbjct: 61  GSGSGSGSSSASSSHSSSSSSGSDAGSEAGSYAGSYAGSRAGSGSGRNRNGGSGSGSGSG 120

Query: 121 -----------GYGEGHGYGEGHGYGSGGEN 132
                      GYGEGHGYGEGHGYG+GGEN
Sbjct: 121 YGAGSGRGSGEGYGEGHGYGEGHGYGNGGEN 151

[Close]

BLAST of Lsi06G010980 vs. NCBI nr
Match: XP_008443812.1 (PREDICTED: putative glycine-rich cell wall structural protein 1 [Cucumis melo])

HSP 1 Score: 156.0 bits (393), Expect = 2.2e-34
Identity = 116/140 (82.86%), Postives = 121/140 (86.43%), Query Frame = 0


Query: 1   MASIRAVAIVAFLLGLSVIVSESRVARMDLGLDLGRVGLGVGTGVGLGLGGSGSGSGSGS 60
           MASIR VA+V FLLG+SVIVSESRVAR DLGLDLG +GLGVGTGVGLGL   GSGSG GS
Sbjct: 1   MASIRGVAVVTFLLGVSVIVSESRVARKDLGLDLGGMGLGVGTGVGLGL--DGSGSGFGS 60

Query: 61  GSGSSSASSSQSSSSSSGSDAGSEAGSYAGSYAGSRSGSGSGRNRNGGSGS--------- 120
           G GSSSASSS SSSSSSGSDAGSEAGSYAGSYAGSR+GSGSGRNRNGGSGS         
Sbjct: 61  GPGSSSASSSHSSSSSSGSDAGSEAGSYAGSYAGSRAGSGSGRNRNGGSGSGSGTGNGGE 120

Query: 121 GYGEGHGYGEGHGYGSGGEN 132
           GYGEGHGYGEGHGYG+GGEN
Sbjct: 121 GYGEGHGYGEGHGYGNGGEN 138

[Close]

BLAST of Lsi06G010980 vs. NCBI nr
Match: XP_022921884.1 (glycine-rich cell wall structural protein 2-like [Cucurbita moschata] >KAG6589744.1 hypothetical protein SDJN03_15167, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 139.4 bits (350), Expect = 2.2e-29
Identity = 114/151 (75.50%), Postives = 119/151 (78.81%), Query Frame = 0


Query: 1   MASIRAVAIVAFLLGLSVIVSESRVARMDLGLDLGRVGLGVGTGVGLGLG----GSGSGS 60
           MASIRAV+I+A LL LSVIVSESRVARMDLGLDLG VG+G+GTGVGLGLG    GSGSGS
Sbjct: 1   MASIRAVSILALLLALSVIVSESRVARMDLGLDLGGVGVGIGTGVGLGLGGSGSGSGSGS 60

Query: 61  GSGSGSGSSSASSSQSSSSSSGSDAGSEAGSYAGSYAGSRSGSGSGRNRNGGSGSGYGE- 120
           GSGSGSGSSSASSS SSSSSSGSDAGSEAGSYAGSYA    GSGSGRNRNGGSGSG G  
Sbjct: 61  GSGSGSGSSSASSSHSSSSSSGSDAGSEAGSYAGSYA----GSGSGRNRNGGSGSGSGSG 120

Query: 121 ---------------GHGYGEGHGYGSGGEN 132
                          G GYGEGHGYG+ GEN
Sbjct: 121 SGYGAGSGRGSGSGGGEGYGEGHGYGNDGEN 147

[Close]

BLAST of Lsi06G010980 vs. NCBI nr
Match: XP_023515818.1 (putative glycine-rich cell wall structural protein 1 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 134.0 bits (336), Expect = 9.1e-28
Identity = 112/166 (67.47%), Postives = 118/166 (71.08%), Query Frame = 0


Query: 1   MASIRAVAIVAFLLGLSVIVSESRVARMDLGLDLGRVGLGVGTGVGLGLGGSGSGSGSGS 60
           MASIRAV+I+A LL LSVIVSESR+ARMDLGLDLG VG+G+GTGVGLGLG    GSGSGS
Sbjct: 1   MASIRAVSILALLLALSVIVSESRIARMDLGLDLGGVGVGIGTGVGLGLG----GSGSGS 60

Query: 61  GSGSSSASSSQSSSSSSGSDAGSEAGSYAGSYAGSRSGSG-------------------- 120
           GSGSSSASSS SSSSSSGSDAGSEAGSYAGSYAGSR+GSG                    
Sbjct: 61  GSGSSSASSSHSSSSSSGSDAGSEAGSYAGSYAGSRAGSGSGSGAGSEAGSYAGSRAGSA 120

Query: 121 SGRNRNGGSGS------------------GYGEGHGYGEGHGYGSG 129
           SGRNRNGGSGS                  GYGEGHGYGEG GYG G
Sbjct: 121 SGRNRNGGSGSGSGYGGGSGRGSGNGGGEGYGEGHGYGEGRGYGGG 162

[Close]

BLAST of Lsi06G010980 vs. NCBI nr
Match: XP_022135238.1 (putative glycine-rich cell wall structural protein 1 [Momordica charantia])

HSP 1 Score: 127.5 bits (319), Expect = 8.5e-26
Identity = 103/144 (71.53%), Postives = 115/144 (79.86%), Query Frame = 0


Query: 1   MASIRAVAIVAFLLGLS-VIVSESRVARMDLGLDLGRVGLGVGTGVGLGLG---GSGSGS 60
           MA+IR  A+VAF+LGLS  IVSE+RVAR DLG+DLG VG+G+G G+GLG G   GSG+G+
Sbjct: 1   MAAIRCFAVVAFILGLSAAIVSEARVARKDLGIDLGGVGVGLGAGIGLGGGSGSGSGAGA 60

Query: 61  GSGSGSGSSSASSSQSSSSSSGSDAGSEAGSYAGSYAGSRSGSGSGRNRNGGSGS----- 120
           GSGSGSGSSS+SSS SSSSSSGS AGSEAGSYAGSYAGSR+GSGSG NR  GSGS     
Sbjct: 61  GSGSGSGSSSSSSSYSSSSSSGSGAGSEAGSYAGSYAGSRAGSGSGGNRGSGSGSGYGGG 120

Query: 121 -------GYGEGHGYGEGHGYGSG 129
                  GYGEGHGYGEGHGYG G
Sbjct: 121 SGRGSGEGYGEGHGYGEGHGYGGG 144

[Close]

BLAST of Lsi06G010980 vs. TAIR 10
Match: AT4G30460.1 (glycine-rich protein )

HSP 1 Score: 88.6 bits (218), Expect = 4.1e-18
Identity = 84/135 (62.22%), Postives = 99/135 (73.33%), Query Frame = 0


Query: 6   AVAIVAFLLGLSVIVSESRVARMDLGLDLGRVGLGVGTGVGLGLGGSGSGSGSGSGSG-- 65
           ++ ++  +L  SV+VSESRVAR DLGLDLG +G G+G G+G+G GGSGSG+G+GSGSG  
Sbjct: 9   SLILITLILATSVLVSESRVARKDLGLDLGGIGAGIGIGIGIGGGGSGSGAGAGSGSGGG 68

Query: 66  --SSSASSSQSSSSSS---GSDAGSEAGSYAGSYAGSRSG--SGSGRNRNGGSGSGYGEG 125
             SSS+SSS SSSSSS   G DAGSEAGSYAGS+AGS SG  SGSGR R  G G G+G G
Sbjct: 69  GSSSSSSSSSSSSSSSGGGGGDAGSEAGSYAGSHAGSGSGGRSGSGRGRGSGGGGGHGGG 128

Query: 126 HGYGEGHGYGSGGEN 132
            G G G G G G  N
Sbjct: 129 GGGGGGRGGGGGSGN 143

[Close]

BLAST of Lsi06G010980 vs. TAIR 10
Match: AT4G30450.1 (glycine-rich protein )

HSP 1 Score: 77.4 bits (189), Expect = 9.4e-15
Identity = 65/99 (65.66%), Postives = 80/99 (80.81%), Query Frame = 0


Query: 12  FLLGLSVI-----VSESRVARMDLGLDLGRVGLGVGTGVGLGLG---GSGSGSGSGSGSG 71
           FLLGL VI     ++ESR+AR DLG+DLG +G+G+G G+G+GLG   GSG+G+GSGSGSG
Sbjct: 8   FLLGLVVISSLVMLTESRLARKDLGIDLGGIGIGLGVGLGIGLGGGSGSGAGAGSGSGSG 67

Query: 72  SSSASSSQSSSSSSGSDAGSEAGSYAGSYAGSRSGSGSG 103
           S S+SSS SSSSSS S +G  AGS AGS+AGSR+GSGSG
Sbjct: 68  SRSSSSSSSSSSSSSSGSGGSAGSSAGSFAGSRAGSGSG 106

The following BLAST results are available for this feature:

BLAST of Lsi06G010980 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi06G010980 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3B8Y8	1.1e-34	82.86	putative glycine-rich cell wall structural protein 1 OS=Cucumis melo OX=3656 GN=...	[more]
A0A6J1E1T0	1.1e-29	75.50	glycine-rich cell wall structural protein 2-like OS=Cucurbita moschata OX=3662 G...	[more]
A0A6J1C497	4.1e-26	71.53	putative glycine-rich cell wall structural protein 1 OS=Momordica charantia OX=3...	[more]
A0A0A0LZ57	2.1e-25	73.13	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G287000 PE=4 SV=1	[more]
A0A0A0LTK9	4.6e-25	67.76	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G278500 PE=4 SV=1	[more]

BLAST of Lsi06G010980 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038879815.1	5.3e-36	80.79	putative per-hexamer repeat protein 5 [Benincasa hispida]	[more]
XP_008443812.1	2.2e-34	82.86	PREDICTED: putative glycine-rich cell wall structural protein 1 [Cucumis melo]	[more]
XP_022921884.1	2.2e-29	75.50	glycine-rich cell wall structural protein 2-like [Cucurbita moschata] >KAG658974...	[more]
XP_023515818.1	9.1e-28	67.47	putative glycine-rich cell wall structural protein 1 isoform X2 [Cucurbita pepo ...	[more]
XP_022135238.1	8.5e-26	71.53	putative glycine-rich cell wall structural protein 1 [Momordica charantia]	[more]

BLAST of Lsi06G010980 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G30460.1	4.1e-18	62.22	glycine-rich protein	[more]
AT4G30450.1	9.4e-15	65.66	glycine-rich protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 53..108
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 50..131
None	No IPR available	PANTHER	PTHR38934:SF13	GLYCINE-RICH CELL WALL STRUCTURAL PROTEIN 1-RELATED	coord: 1..130
None	No IPR available	PANTHER	PTHR38934	HYPHALLY REGULATED CELL WALL PROTEIN 1	coord: 1..130

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi06G010980.1	Lsi06G010980.1	mRNA