Lsi06G010660 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi06G010660
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Serine-rich protein-related
Location	chr06: 20892712 .. 20893050 (+)
RNA-Seq Expression	Lsi06G010660
Synteny	Lsi06G010660

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCTCAAAATCTGGATCCTCCAATCCCAAATTGCCGACCATCGGCGGTTCACGGAAGTGTCTCTGTTCTCCGACCACCCATCCCGGCTCTTTCCGCTGCAGTTTTCACCGGAACCGTCGCAAGGTCTCTTCGGCTAGGTCATCTTCATCCATTTCCGCCATTACCACTGCGCAATTGGAGCTTGCGATGTTCGCAAAGACGAATTCCTTGAGAGCGTTTCTTCTGCAGATGATTAAGCCGTCGAGTAACGATCTTCAACGGCGAAGGAATTTTCATCCTAAACCTTCCAGGTTTTGTTTGATGAACAATCATGGAACTGGATTGACTGTTTCTTGA

mRNA sequence

ATGGCCTCAAAATCTGGATCCTCCAATCCCAAATTGCCGACCATCGGCGGTTCACGGAAGTGTCTCTGTTCTCCGACCACCCATCCCGGCTCTTTCCGCTGCAGTTTTCACCGGAACCGTCGCAAGGTCTCTTCGGCTAGGTCATCTTCATCCATTTCCGCCATTACCACTGCGCAATTGGAGCTTGCGATGTTCGCAAAGACGAATTCCTTGAGAGCGTTTCTTCTGCAGATGATTAAGCCGTCGAGTAACGATCTTCAACGGCGAAGGAATTTTCATCCTAAACCTTCCAGGTTTTGTTTGATGAACAATCATGGAACTGGATTGACTGTTTCTTGA

Coding sequence (CDS)

ATGGCCTCAAAATCTGGATCCTCCAATCCCAAATTGCCGACCATCGGCGGTTCACGGAAGTGTCTCTGTTCTCCGACCACCCATCCCGGCTCTTTCCGCTGCAGTTTTCACCGGAACCGTCGCAAGGTCTCTTCGGCTAGGTCATCTTCATCCATTTCCGCCATTACCACTGCGCAATTGGAGCTTGCGATGTTCGCAAAGACGAATTCCTTGAGAGCGTTTCTTCTGCAGATGATTAAGCCGTCGAGTAACGATCTTCAACGGCGAAGGAATTTTCATCCTAAACCTTCCAGGTTTTGTTTGATGAACAATCATGGAACTGGATTGACTGTTTCTTGA

Protein sequence

MASKSGSSNPKLPTIGGSRKCLCSPTTHPGSFRCSFHRNRRKVSSARSSSSISAITTAQLELAMFAKTNSLRAFLLQMIKPSSNDLQRRRNFHPKPSRFCLMNNHGTGLTVS

Homology

[Close]

BLAST of Lsi06G010660 vs. ExPASy TrEMBL
Match: A0A6J1E1K3 (uncharacterized protein LOC111429944 OS=Cucurbita moschata OX=3662 GN=LOC111429944 PE=4 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 2.4e-43
Identity = 93/112 (83.04%), Postives = 100/112 (89.29%), Query Frame = 0


Query: 1   MASKSGSSNPKLPTIGGSRKCLCSPTTHPGSFRCSFHRNRRKVSSARSSSSISAITTAQL 60
           MASKSGSSNPKL +IGGSRKCLCSPTTHPGSFRCS HRNRRKVS+  SSSSI+AITTAQL
Sbjct: 1   MASKSGSSNPKLQSIGGSRKCLCSPTTHPGSFRCSIHRNRRKVSARSSSSSIAAITTAQL 60

Query: 61  ELAMFAKTNSLRAFLLQMIKPSSNDLQRRRNFHPKPSRFCLMNNHGTGLTVS 113
           +L M AK N+LR+FL Q+I PSS DLQRRRNF PKPSRFCLMNNHGTGL VS
Sbjct: 61  KLTMLAKANALRSFLQQIINPSSKDLQRRRNFRPKPSRFCLMNNHGTGLAVS 112

[Close]

BLAST of Lsi06G010660 vs. ExPASy TrEMBL
Match: A0A6J1EG01 (uncharacterized protein LOC111433980 OS=Cucurbita moschata OX=3662 GN=LOC111433980 PE=4 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 5.1e-41
Identity = 87/112 (77.68%), Postives = 99/112 (88.39%), Query Frame = 0


Query: 1   MASKSGSSNPKLPTIGGSRKCLCSPTTHPGSFRCSFHRNRRKVSSARSSSSISAITTAQL 60
           MA+KS S N KL ++G SRKCLCSPTTHPGSFRCSFHRNRRK S+  SSSSI+AIT+AQL
Sbjct: 1   MATKSRSVNSKLQSVGSSRKCLCSPTTHPGSFRCSFHRNRRKASARSSSSSITAITSAQL 60

Query: 61  ELAMFAKTNSLRAFLLQMIKPSSNDLQRRRNFHPKPSRFCLMNNHGTGLTVS 113
           EL +FAK N++RAFLL +I+PSSNDLQRRRNFHP+PSRFCLMN HGTGL VS
Sbjct: 61  ELTVFAKANAVRAFLLHIIRPSSNDLQRRRNFHPRPSRFCLMNKHGTGLAVS 112

[Close]

BLAST of Lsi06G010660 vs. ExPASy TrEMBL
Match: A0A6J1KSU0 (uncharacterized protein LOC111497277 OS=Cucurbita maxima OX=3661 GN=LOC111497277 PE=4 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 1.9e-40
Identity = 87/112 (77.68%), Postives = 99/112 (88.39%), Query Frame = 0


Query: 1   MASKSGSSNPKLPTIGGSRKCLCSPTTHPGSFRCSFHRNRRKVSSARSSSSISAITTAQL 60
           MA+KS S+N KL ++G SRKCLCSPTTHPGSFRCSFHRNRRK S+  SSSSISAIT+AQL
Sbjct: 1   MATKSRSANSKLQSVGSSRKCLCSPTTHPGSFRCSFHRNRRKASARSSSSSISAITSAQL 60

Query: 61  ELAMFAKTNSLRAFLLQMIKPSSNDLQRRRNFHPKPSRFCLMNNHGTGLTVS 113
           EL +FAK N++RAFLL +I+PSSNDLQRRRNF P+PSRFCLMN HGTGL VS
Sbjct: 61  ELTVFAKANAVRAFLLHIIRPSSNDLQRRRNFLPRPSRFCLMNKHGTGLAVS 112

[Close]

BLAST of Lsi06G010660 vs. ExPASy TrEMBL
Match: A0A0A0LYY6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G264520 PE=4 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 5.6e-40
Identity = 91/113 (80.53%), Postives = 98/113 (86.73%), Query Frame = 0


Query: 1   MASKSGSSNPKLPTIGGSRKCLCSPTTHPGSFRCSFHRNRRKVSSAR-SSSSISAITTAQ 60
           MASKSGSS  K PT G SRKCLCSPTTHPGSFRCSFHRNR K+SS+R SSSS+S ITTA 
Sbjct: 1   MASKSGSSTHKFPTNGASRKCLCSPTTHPGSFRCSFHRNRHKISSSRSSSSSLSLITTAD 60

Query: 61  LELAMFAKTNSLRAFLLQMIKPSSNDLQRRRNFHPKPSRFCLMNNHGTGLTVS 113
           LEL   AK N+LR+FLLQMIKPSSNDLQRRRNFHP+PSRFCLMN+H TGL VS
Sbjct: 61  LEL---AKANALRSFLLQMIKPSSNDLQRRRNFHPRPSRFCLMNDHATGLAVS 110

[Close]

BLAST of Lsi06G010660 vs. ExPASy TrEMBL
Match: A0A5A7U6S1 (Serine-rich protein-related OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold25870G00010 PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 6.9e-38
Identity = 87/112 (77.68%), Postives = 94/112 (83.93%), Query Frame = 0


Query: 1   MASKSGSSNPKLPTIGGSRKCLCSPTTHPGSFRCSFHRNRRKVSSARSSSSISAITTAQL 60
           MASKSGSS  K P+  GSRKCLCSPTTHPGSFRCSFHR R K+SS RSSSS      A+L
Sbjct: 1   MASKSGSSTHKFPSTAGSRKCLCSPTTHPGSFRCSFHRTRHKISSTRSSSS------AEL 60

Query: 61  ELAMFAKTNSLRAFLLQMIKPSSNDLQRRRNFHPKPSRFCLMNNHGTGLTVS 113
           EL   AK N+LRAFLLQMIKPSSND+QRRRNFHP+PSRFCLMN+HGTGLTVS
Sbjct: 61  EL---AKANALRAFLLQMIKPSSNDVQRRRNFHPRPSRFCLMNDHGTGLTVS 103

[Close]

BLAST of Lsi06G010660 vs. NCBI nr
Match: XP_023515429.1 (uncharacterized protein LOC111779591 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 186.8 bits (473), Expect = 1.0e-43
Identity = 94/112 (83.93%), Postives = 101/112 (90.18%), Query Frame = 0


Query: 1   MASKSGSSNPKLPTIGGSRKCLCSPTTHPGSFRCSFHRNRRKVSSARSSSSISAITTAQL 60
           MASKSGSSNPKL +IGGSRKCLCSPTTHPGSFRCS HRNRRKVS+  SSSSI+AITTAQL
Sbjct: 1   MASKSGSSNPKLQSIGGSRKCLCSPTTHPGSFRCSIHRNRRKVSARSSSSSIAAITTAQL 60

Query: 61  ELAMFAKTNSLRAFLLQMIKPSSNDLQRRRNFHPKPSRFCLMNNHGTGLTVS 113
           +L M AK N+LR+FLLQ+I PSS DLQRRRNF PKPSRFCLMNNHGTGL VS
Sbjct: 61  KLTMLAKANALRSFLLQIINPSSKDLQRRRNFRPKPSRFCLMNNHGTGLAVS 112

[Close]

BLAST of Lsi06G010660 vs. NCBI nr
Match: XP_022921799.1 (uncharacterized protein LOC111429944 [Cucurbita moschata] >KAG7023478.1 hypothetical protein SDJN02_14503, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 184.5 bits (467), Expect = 5.0e-43
Identity = 93/112 (83.04%), Postives = 100/112 (89.29%), Query Frame = 0


Query: 1   MASKSGSSNPKLPTIGGSRKCLCSPTTHPGSFRCSFHRNRRKVSSARSSSSISAITTAQL 60
           MASKSGSSNPKL +IGGSRKCLCSPTTHPGSFRCS HRNRRKVS+  SSSSI+AITTAQL
Sbjct: 1   MASKSGSSNPKLQSIGGSRKCLCSPTTHPGSFRCSIHRNRRKVSARSSSSSIAAITTAQL 60

Query: 61  ELAMFAKTNSLRAFLLQMIKPSSNDLQRRRNFHPKPSRFCLMNNHGTGLTVS 113
           +L M AK N+LR+FL Q+I PSS DLQRRRNF PKPSRFCLMNNHGTGL VS
Sbjct: 61  KLTMLAKANALRSFLQQIINPSSKDLQRRRNFRPKPSRFCLMNNHGTGLAVS 112

[Close]

BLAST of Lsi06G010660 vs. NCBI nr
Match: XP_022927032.1 (uncharacterized protein LOC111433980 [Cucurbita moschata] >KAG7021749.1 hypothetical protein SDJN02_15476, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 176.8 bits (447), Expect = 1.0e-40
Identity = 87/112 (77.68%), Postives = 99/112 (88.39%), Query Frame = 0


Query: 1   MASKSGSSNPKLPTIGGSRKCLCSPTTHPGSFRCSFHRNRRKVSSARSSSSISAITTAQL 60
           MA+KS S N KL ++G SRKCLCSPTTHPGSFRCSFHRNRRK S+  SSSSI+AIT+AQL
Sbjct: 1   MATKSRSVNSKLQSVGSSRKCLCSPTTHPGSFRCSFHRNRRKASARSSSSSITAITSAQL 60

Query: 61  ELAMFAKTNSLRAFLLQMIKPSSNDLQRRRNFHPKPSRFCLMNNHGTGLTVS 113
           EL +FAK N++RAFLL +I+PSSNDLQRRRNFHP+PSRFCLMN HGTGL VS
Sbjct: 61  ELTVFAKANAVRAFLLHIIRPSSNDLQRRRNFHPRPSRFCLMNKHGTGLAVS 112

[Close]

BLAST of Lsi06G010660 vs. NCBI nr
Match: XP_023003805.1 (uncharacterized protein LOC111497277 [Cucurbita maxima])

HSP 1 Score: 174.9 bits (442), Expect = 4.0e-40
Identity = 87/112 (77.68%), Postives = 99/112 (88.39%), Query Frame = 0


Query: 1   MASKSGSSNPKLPTIGGSRKCLCSPTTHPGSFRCSFHRNRRKVSSARSSSSISAITTAQL 60
           MA+KS S+N KL ++G SRKCLCSPTTHPGSFRCSFHRNRRK S+  SSSSISAIT+AQL
Sbjct: 1   MATKSRSANSKLQSVGSSRKCLCSPTTHPGSFRCSFHRNRRKASARSSSSSISAITSAQL 60

Query: 61  ELAMFAKTNSLRAFLLQMIKPSSNDLQRRRNFHPKPSRFCLMNNHGTGLTVS 113
           EL +FAK N++RAFLL +I+PSSNDLQRRRNF P+PSRFCLMN HGTGL VS
Sbjct: 61  ELTVFAKANAVRAFLLHIIRPSSNDLQRRRNFLPRPSRFCLMNKHGTGLAVS 112

[Close]

BLAST of Lsi06G010660 vs. NCBI nr
Match: XP_023530962.1 (uncharacterized protein LOC111793349 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 174.9 bits (442), Expect = 4.0e-40
Identity = 86/112 (76.79%), Postives = 98/112 (87.50%), Query Frame = 0


Query: 1   MASKSGSSNPKLPTIGGSRKCLCSPTTHPGSFRCSFHRNRRKVSSARSSSSISAITTAQL 60
           MA+KS S N KL ++G SRKCLCSPTTHPGSFRCSFHRNRRK S+  SSSSI+AIT+AQL
Sbjct: 1   MATKSRSVNSKLQSVGSSRKCLCSPTTHPGSFRCSFHRNRRKASARSSSSSITAITSAQL 60

Query: 61  ELAMFAKTNSLRAFLLQMIKPSSNDLQRRRNFHPKPSRFCLMNNHGTGLTVS 113
           EL ++AK N++RAFLL +I+PSSNDLQRRRNFHP PSRFCLMN HGTGL VS
Sbjct: 61  ELTVYAKANAVRAFLLHIIRPSSNDLQRRRNFHPSPSRFCLMNKHGTGLAVS 112

[Close]

BLAST of Lsi06G010660 vs. TAIR 10
Match: AT5G11090.1 (serine-rich protein-related )

HSP 1 Score: 68.6 bits (166), Expect = 3.8e-12
Identity = 42/96 (43.75%), Postives = 56/96 (58.33%), Query Frame = 0


Query: 18  SRKCLCSPTTHPGSFRCSFHRNRRKVSSARSSSSISAITTAQLELAMFAKTNSL------ 77
           SR+C+CSPTTHPGSFRCS H+N   V++     + S  TT  L +   A TNSL      
Sbjct: 120 SRRCMCSPTTHPGSFRCSLHKN---VANPHGQGTAS-YTTNGLNMRRSAMTNSLVRIGGV 179

Query: 78  -----RAFLLQMIKPSSNDLQRRRNFHPKPSRFCLM 103
                R  L  +I+PSS+ L+RR  + P+PSR  +M
Sbjct: 180 EGEWVRRALTTLIRPSSHHLKRRAAYQPRPSRLSIM 211

[Close]

BLAST of Lsi06G010660 vs. TAIR 10
Match: AT5G25280.1 (serine-rich protein-related )

HSP 1 Score: 63.9 bits (154), Expect = 9.2e-11
Identity = 44/114 (38.60%), Postives = 63/114 (55.26%), Query Frame = 0


Query: 1   MASKSGSSNPKLPTIGGSRKCLCSPTTHPGSFRCSFHRNRRKVSSARSSSSISAITTAQL 60
           ++S   S++ K+P     R+C+CSPTTHPGSFRCS H+N   V++     + S  TT  L
Sbjct: 108 VSSNKPSNHHKIP--DSRRRCMCSPTTHPGSFRCSLHKN---VANPHGQGTAS-YTTNGL 167

Query: 61  ELAMFAKTNSL-----------RAFLLQMIKPSSNDLQRRRNFHPKPSRFCLMN 104
            +   A TNSL           R  L  +I+PSS+ L+RR  + P+ SR   M+
Sbjct: 168 NMRRSAMTNSLVRIGGVEGEWVRRALTTLIRPSSHQLKRRSAYEPRRSRLASMS 215

[Close]

BLAST of Lsi06G010660 vs. TAIR 10
Match: AT5G25280.2 (serine-rich protein-related )

HSP 1 Score: 63.9 bits (154), Expect = 9.2e-11
Identity = 44/114 (38.60%), Postives = 63/114 (55.26%), Query Frame = 0


Query: 1   MASKSGSSNPKLPTIGGSRKCLCSPTTHPGSFRCSFHRNRRKVSSARSSSSISAITTAQL 60
           ++S   S++ K+P     R+C+CSPTTHPGSFRCS H+N   V++     + S  TT  L
Sbjct: 108 VSSNKPSNHHKIP--DSRRRCMCSPTTHPGSFRCSLHKN---VANPHGQGTAS-YTTNGL 167

Query: 61  ELAMFAKTNSL-----------RAFLLQMIKPSSNDLQRRRNFHPKPSRFCLMN 104
            +   A TNSL           R  L  +I+PSS+ L+RR  + P+ SR   M+
Sbjct: 168 NMRRSAMTNSLVRIGGVEGEWVRRALTTLIRPSSHQLKRRSAYEPRRSRLASMS 215

[Close]

BLAST of Lsi06G010660 vs. TAIR 10
Match: AT5G20370.1 (serine-rich protein-related )

HSP 1 Score: 56.6 bits (135), Expect = 1.5e-08
Identity = 41/102 (40.20%), Postives = 49/102 (48.04%), Query Frame = 0


Query: 19  RKCLCSPTTHPGSFRCSFHRN-RRKVSSARSSSSI--------SAITTAQLELAMFAKTN 78
           RKCLCSPTTHPGSFRCSFHR    + S   +SS++        +      L L   A  N
Sbjct: 69  RKCLCSPTTHPGSFRCSFHRRLEHEKSKTLASSTVKRNNRGDNTIRVNVGLNLRKLALMN 128

Query: 79  SL------------RAFLLQMIKPSSNDLQRRRNFHPKPSRF 100
           SL            R+    + KPSS    RR  F P+ SRF
Sbjct: 129 SLAKIGSVEAERFRRSLAANLAKPSSLHSHRRPEFRPRLSRF 170

[Close]

BLAST of Lsi06G010660 vs. TAIR 10
Match: AT3G13227.1 (serine-rich protein-related )

HSP 1 Score: 43.9 bits (102), Expect = 9.9e-05
Identity = 17/32 (53.12%), Postives = 23/32 (71.88%), Query Frame = 0


Query: 19 RKCLCSPTTHPGSFRCSFHRNRRKVSSARSSS 51
          + CLC+PTTHPGSFRC +HR    +  +R +S
Sbjct: 63 QNCLCAPTTHPGSFRCRYHRRNAGLGMSRGTS 94

The following BLAST results are available for this feature:

BLAST of Lsi06G010660 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi06G010660 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E1K3	2.4e-43	83.04	uncharacterized protein LOC111429944 OS=Cucurbita moschata OX=3662 GN=LOC1114299...	[more]
A0A6J1EG01	5.1e-41	77.68	uncharacterized protein LOC111433980 OS=Cucurbita moschata OX=3662 GN=LOC1114339...	[more]
A0A6J1KSU0	1.9e-40	77.68	uncharacterized protein LOC111497277 OS=Cucurbita maxima OX=3661 GN=LOC111497277...	[more]
A0A0A0LYY6	5.6e-40	80.53	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G264520 PE=4 SV=1	[more]
A0A5A7U6S1	6.9e-38	77.68	Serine-rich protein-related OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]

BLAST of Lsi06G010660 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023515429.1	1.0e-43	83.93	uncharacterized protein LOC111779591 [Cucurbita pepo subsp. pepo]	[more]
XP_022921799.1	5.0e-43	83.04	uncharacterized protein LOC111429944 [Cucurbita moschata] >KAG7023478.1 hypothet...	[more]
XP_022927032.1	1.0e-40	77.68	uncharacterized protein LOC111433980 [Cucurbita moschata] >KAG7021749.1 hypothet...	[more]
XP_023003805.1	4.0e-40	77.68	uncharacterized protein LOC111497277 [Cucurbita maxima]	[more]
XP_023530962.1	4.0e-40	76.79	uncharacterized protein LOC111793349 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Lsi06G010660 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G11090.1	3.8e-12	43.75	serine-rich protein-related	[more]
AT5G25280.1	9.2e-11	38.60	serine-rich protein-related	[more]
AT5G25280.2	9.2e-11	38.60	serine-rich protein-related	[more]
AT5G20370.1	1.5e-08	40.20	serine-rich protein-related	[more]
AT3G13227.1	9.9e-05	53.13	serine-rich protein-related	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	PANTHER	PTHR33132	OSJNBB0118P14.9 PROTEIN	coord: 17..106
None	No IPR available	PANTHER	PTHR33132:SF63	SUBFAMILY NOT NAMED	coord: 17..106

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi06G010660.1	Lsi06G010660.1	mRNA