Lsi06G010340 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi06G010340
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUnknown protein
Locationchr06: 20491629 .. 20491946 (-)
RNA-Seq ExpressionLsi06G010340
SyntenyLsi06G010340
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACCTCAATGAAGCTAGCACTTATATCTCTAGTCTCCATAGCCATTTTAGCATTACCCGCGATGGCACGTACCACAGTGGCAGTGCCTAATCCGAATCCGTTCACAACAGAGGATTTATCATTATTAGGTTGCACATCATTTATTTTCGAGGCAACGAAATGCGTGATTGATGTGATGTAGAATGCAGTTGCTCCTCATCTGTCATGTTGCAAAGCCATCTCTAAGCTCAACGATTGTTCCTCCGAGTTTCTCAAAAACGTTCCCTCTGCTGACATGATTTTGATTAAGGACATTTGTGCATTGTGGGGTGCTTGA

mRNA sequence

ATGACCTCAATGAAGCTAGCACTTATATCTCTAGTCTCCATAGCCATTTTAGCATTACCCGCGATGGCACGTACCACAGTGGCAGTGCCTAATCCGAATCCGTTCACAACAGAGGATTTATCATTATTAGTTGCTCCTCATCTGTCATGTTGCAAAGCCATCTCTAAGCTCAACGATTGTTCCTCCGAGTTTCTCAAAAACGTTCCCTCTGCTGACATGATTTTGATTAAGGACATTTGTGCATTGTGGGGTGCTTGA

Coding sequence (CDS)

ATGACCTCAATGAAGCTAGCACTTATATCTCTAGTCTCCATAGCCATTTTAGCATTACCCGCGATGGCACGTACCACAGTGGCAGTGCCTAATCCGAATCCGTTCACAACAGAGGATTTATCATTATTAGTTGCTCCTCATCTGTCATGTTGCAAAGCCATCTCTAAGCTCAACGATTGTTCCTCCGAGTTTCTCAAAAACGTTCCCTCTGCTGACATGATTTTGATTAAGGACATTTGTGCATTGTGGGGTGCTTGA

Protein sequence

MTSMKLALISLVSIAILALPAMARTTVAVPNPNPFTTEDLSLLVAPHLSCCKAISKLNDCSSEFLKNVPSADMILIKDICALWGA
Homology
BLAST of Lsi06G010340 vs. ExPASy TrEMBL
Match: A0A5D3CG41 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold367G00010 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 5.1e-17
Identity = 57/104 (54.81%), Postives = 66/104 (63.46%), Query Frame = 0

Query: 1   MTSMKLALISLVSIAILALPAMARTTVAVPNPNPFTTEDLSLL----------------- 60
           M S+KL L+  V +AILA+  +A T  A P+ +PFT E+LSLL                 
Sbjct: 1   MASIKLPLVFFVCMAILAVSGIAHTGAAAPS-DPFTAEELSLLGCTSFISEATKCVIDVM 60

Query: 61  ---VAPHLSCCKAISKLNDCSSEFLKNVPSADMILIKDICALWG 85
              VAPH SCCKA SKLNDCS EFLK +PSADMILIK ICALWG
Sbjct: 61  KNAVAPHPSCCKAFSKLNDCSPEFLKGIPSADMILIKGICALWG 103

BLAST of Lsi06G010340 vs. ExPASy TrEMBL
Match: A0A5A7U483 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G00620 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 1.1e-16
Identity = 57/104 (54.81%), Postives = 65/104 (62.50%), Query Frame = 0

Query: 1   MTSMKLALISLVSIAILALPAMARTTVAVPNPNPFTTEDLSLL----------------- 60
           M S+KL L+  V +AILA+  +A T  A P+ +PFT E LSLL                 
Sbjct: 1   MASIKLPLVFFVCMAILAVSGIAHTGAAAPS-DPFTAEKLSLLGCTSFISEATKCVIDVM 60

Query: 61  ---VAPHLSCCKAISKLNDCSSEFLKNVPSADMILIKDICALWG 85
              VAPH SCCKA SKLNDCS EFLK +PSADMILIK ICALWG
Sbjct: 61  KNAVAPHPSCCKAFSKLNDCSPEFLKGIPSADMILIKGICALWG 103

BLAST of Lsi06G010340 vs. ExPASy TrEMBL
Match: A0A5A7U904 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G00650 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 5.8e-13
Identity = 49/105 (46.67%), Postives = 58/105 (55.24%), Query Frame = 0

Query: 2   TSMKLALISLVSIAILALPAMA-RTTVAVPNPNPFTTEDLSLL----------------- 61
           ++MKL LI L   AI  LPA A +  VA   P+PF TED+S                   
Sbjct: 9   STMKLILIFLCCTAIFTLPAEAMKAAVAPTQPDPFLTEDISFFPCFSFVPEATKCMIDVF 68

Query: 62  ---VAPHLSCCKAISKLNDCSSEFLKNVPSADMILIKDICALWGA 86
              +APH +CCKAISKL  CSS F   +PSADMILIK +C  WGA
Sbjct: 69  KHPIAPHPTCCKAISKLKSCSSSFFNGIPSADMILIKSVCTSWGA 113

BLAST of Lsi06G010340 vs. ExPASy TrEMBL
Match: A0A5D3CFS6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold367G00210 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 8.4e-12
Identity = 51/101 (50.50%), Postives = 61/101 (60.40%), Query Frame = 0

Query: 5   KLALISLVSIAILALPAMAR-TTVAVPNPNPFTTEDLSLL-------------------- 64
           KL L+ LV IAILA    AR T VA   P   T+ED SL                     
Sbjct: 8   KLPLVLLVCIAILASSVTARPTIVAAATP---TSEDFSLFPCISFVPKATKCVIDVLKNA 67

Query: 65  VAPHLSCCKAISKLNDCSSEFLKNVPSADMILIKDICALWG 85
           VAPH SCC+AIS+L+DCSS+FLK++PS+DMIL+K ICA WG
Sbjct: 68  VAPHPSCCEAISQLHDCSSQFLKDIPSSDMILVKSICASWG 105

BLAST of Lsi06G010340 vs. ExPASy TrEMBL
Match: A0A0A0LTE1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G263980 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 2.4e-11
Identity = 50/102 (49.02%), Postives = 58/102 (56.86%), Query Frame = 0

Query: 1   MTSMKLALISLVSIAILALPAMARTT----------VAVPNPNPFTTEDLSLLV------ 60
           + S+KL +I LV IAILALP M RTT          VA  N   FT E    ++      
Sbjct: 2   VASLKLPIIFLVCIAILALPVMTRTTTTLDQFSTKDVASVNCTVFTFEATKCMIDVMKNS 61

Query: 61  -APHLSCCKAISKLNDCSSEFLKNVPSADMILIKDICALWGA 86
             PH SCC+AI KLNDC+ E  K+VPS D  LIK IC LWGA
Sbjct: 62  MPPHPSCCRAILKLNDCNPEVYKDVPSTDKKLIKKICELWGA 103

BLAST of Lsi06G010340 vs. NCBI nr
Match: KAE8653021.1 (hypothetical protein Csa_004567 [Cucumis sativus])

HSP 1 Score: 99.8 bits (247), Expect = 1.2e-17
Identity = 60/104 (57.69%), Postives = 65/104 (62.50%), Query Frame = 0

Query: 1   MTSMKLALISLVSIAILALPAMARTTVAVPNPNPFTTEDLSLL----------------- 60
           M SMKL L+ LV IAILA+  MA T    P  +PFT E+ SLL                 
Sbjct: 1   MASMKLPLVFLVCIAILAVSGMAHTGALAP-ADPFTAEEFSLLGCTSFISEATNCMVDVM 60

Query: 61  ---VAPHLSCCKAISKLNDCSSEFLKNVPSADMILIKDICALWG 85
              VAPH SCCKA SKLNDCSSEFLK +PSADMILIK ICALWG
Sbjct: 61  KNAVAPHPSCCKAFSKLNDCSSEFLKGIPSADMILIKGICALWG 103

BLAST of Lsi06G010340 vs. NCBI nr
Match: TYK10330.1 (hypothetical protein E5676_scaffold367G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 96.7 bits (239), Expect = 1.0e-16
Identity = 57/104 (54.81%), Postives = 66/104 (63.46%), Query Frame = 0

Query: 1   MTSMKLALISLVSIAILALPAMARTTVAVPNPNPFTTEDLSLL----------------- 60
           M S+KL L+  V +AILA+  +A T  A P+ +PFT E+LSLL                 
Sbjct: 1   MASIKLPLVFFVCMAILAVSGIAHTGAAAPS-DPFTAEELSLLGCTSFISEATKCVIDVM 60

Query: 61  ---VAPHLSCCKAISKLNDCSSEFLKNVPSADMILIKDICALWG 85
              VAPH SCCKA SKLNDCS EFLK +PSADMILIK ICALWG
Sbjct: 61  KNAVAPHPSCCKAFSKLNDCSPEFLKGIPSADMILIKGICALWG 103

BLAST of Lsi06G010340 vs. NCBI nr
Match: KAA0050078.1 (hypothetical protein E6C27_scaffold675G00620 [Cucumis melo var. makuwa])

HSP 1 Score: 95.5 bits (236), Expect = 2.3e-16
Identity = 57/104 (54.81%), Postives = 65/104 (62.50%), Query Frame = 0

Query: 1   MTSMKLALISLVSIAILALPAMARTTVAVPNPNPFTTEDLSLL----------------- 60
           M S+KL L+  V +AILA+  +A T  A P+ +PFT E LSLL                 
Sbjct: 1   MASIKLPLVFFVCMAILAVSGIAHTGAAAPS-DPFTAEKLSLLGCTSFISEATKCVIDVM 60

Query: 61  ---VAPHLSCCKAISKLNDCSSEFLKNVPSADMILIKDICALWG 85
              VAPH SCCKA SKLNDCS EFLK +PSADMILIK ICALWG
Sbjct: 61  KNAVAPHPSCCKAFSKLNDCSPEFLKGIPSADMILIKGICALWG 103

BLAST of Lsi06G010340 vs. NCBI nr
Match: KAG6589812.1 (hypothetical protein SDJN03_15235, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 85.5 bits (210), Expect = 2.4e-13
Identity = 54/101 (53.47%), Postives = 58/101 (57.43%), Query Frame = 0

Query: 4  MKLALISLVSIAILALPAMARTTVAVPNPNPFTTEDLSLL-------------------- 63
          MKLA   LV IAILA PAMA        P+PF  E  SL                     
Sbjct: 1  MKLAAACLVCIAILASPAMA--------PDPFAAEGFSLFGCTSAVSEMTKCVVDVMKQA 60

Query: 64 VAPHLSCCKAISKLNDCSSEFLKNVPSADMILIKDICALWG 85
          VAPH SCC+AISKLN CSS FLK+VPSADM LIK +CALWG
Sbjct: 61 VAPHPSCCRAISKLNRCSSVFLKDVPSADMFLIKTVCALWG 93

BLAST of Lsi06G010340 vs. NCBI nr
Match: KAA0050081.1 (hypothetical protein E6C27_scaffold675G00650 [Cucumis melo var. makuwa])

HSP 1 Score: 83.2 bits (204), Expect = 1.2e-12
Identity = 49/105 (46.67%), Postives = 58/105 (55.24%), Query Frame = 0

Query: 2   TSMKLALISLVSIAILALPAMA-RTTVAVPNPNPFTTEDLSLL----------------- 61
           ++MKL LI L   AI  LPA A +  VA   P+PF TED+S                   
Sbjct: 9   STMKLILIFLCCTAIFTLPAEAMKAAVAPTQPDPFLTEDISFFPCFSFVPEATKCMIDVF 68

Query: 62  ---VAPHLSCCKAISKLNDCSSEFLKNVPSADMILIKDICALWGA 86
              +APH +CCKAISKL  CSS F   +PSADMILIK +C  WGA
Sbjct: 69  KHPIAPHPTCCKAISKLKSCSSSFFNGIPSADMILIKSVCTSWGA 113

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3CG415.1e-1754.81Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7U4831.1e-1654.81Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7U9045.8e-1346.67Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3CFS68.4e-1250.50Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0LTE12.4e-1149.02Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G263980 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
KAE8653021.11.2e-1757.69hypothetical protein Csa_004567 [Cucumis sativus][more]
TYK10330.11.0e-1654.81hypothetical protein E5676_scaffold367G00010 [Cucumis melo var. makuwa][more]
KAA0050078.12.3e-1654.81hypothetical protein E6C27_scaffold675G00620 [Cucumis melo var. makuwa][more]
KAG6589812.12.4e-1353.47hypothetical protein SDJN03_15235, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAA0050081.11.2e-1246.67hypothetical protein E6C27_scaffold675G00650 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi06G010340.1Lsi06G010340.1mRNA