Lsi06G010280 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi06G010280
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Unknown protein
Location	chr06: 20443523 .. 20443840 (-)
RNA-Seq Expression	Lsi06G010280
Synteny	Lsi06G010280

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGCAAAGACGATGATCGCATCCACAATAAGGTTAGCACTTGTATTCCTAGTTTGCATAGTCATTTTAACACCATCAGTGACGGCTCGCACGATAGCAGCAGCACCAAGTCCATTAGTGTTAGAGGATTTATCTTTCTCAAATTGCGCACCCTTTATTTTAGAGGCAACATTGTGTGTGGTAGATGTGATCAAGCTTCCAGTTGCTCCTCATCCTGCTTGTTGTAAAGCTATTTCTGAACTCAACGACTGTTCTCCTGAAATTTATCAACATATTTCTGGCATGGATGTGATTAAGAAAATATGTGGTCTGTGA

mRNA sequence

ATGGAGGCAAAGACGATGATCGCATCCACAATAAGGTTAGCACTTGTATTCCTAGTTTGCATAGTCATTTTAACACCATCAGTGACGGCTCGCACGATAGCAGCAGCACCAAGTCCATTAGTGTTAGAGGATTTATCTTTCTCAAATTGCGCACCCTTTATTTTAGAGGCAACATTGTGTGTGGTAGATGTGATCAAGCTTCCAGTTGCTCCTCATCCTGCTTGTTGTAAAGCTATTTCTGAACTCAACGACTGTTCTCCTGAAATTTATCAACATATTTCTGGCATGGATGTGATTAAGAAAATATGTGGTCTGTGA

Coding sequence (CDS)

ATGGAGGCAAAGACGATGATCGCATCCACAATAAGGTTAGCACTTGTATTCCTAGTTTGCATAGTCATTTTAACACCATCAGTGACGGCTCGCACGATAGCAGCAGCACCAAGTCCATTAGTGTTAGAGGATTTATCTTTCTCAAATTGCGCACCCTTTATTTTAGAGGCAACATTGTGTGTGGTAGATGTGATCAAGCTTCCAGTTGCTCCTCATCCTGCTTGTTGTAAAGCTATTTCTGAACTCAACGACTGTTCTCCTGAAATTTATCAACATATTTCTGGCATGGATGTGATTAAGAAAATATGTGGTCTGTGA

Protein sequence

MEAKTMIASTIRLALVFLVCIVILTPSVTARTIAAAPSPLVLEDLSFSNCAPFILEATLCVVDVIKLPVAPHPACCKAISELNDCSPEIYQHISGMDVIKKICGL

Homology

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BLAST of Lsi06G010280 vs. ExPASy TrEMBL
Match: A0A5D3CGL7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold367G00200 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 3.8e-38
Identity = 86/106 (81.13%), Postives = 96/106 (90.57%), Query Frame = 0


Query: 3   AKTMIASTIRLALVFLVCIVILTPSVTARTIAAAPSPLVL---EDLSFSNCAPFILEATL 62
           AK+  ASTIRLALVFLVCIVIL PSVTA T+A APSPL++   +D SFSNCAPFILEAT+
Sbjct: 4   AKSTSASTIRLALVFLVCIVILAPSVTAHTMAEAPSPLLVLLDQDSSFSNCAPFILEATM 63

Query: 63  CVVDVIKLPVAPHPACCKAISELNDCSPEIYQHISGMDVIKKICGL 106
           C+VDVIKLPVAPHP+CCKAIS+LNDC+PEIYQHI GMDVIKKICGL
Sbjct: 64  CMVDVIKLPVAPHPSCCKAISDLNDCAPEIYQHIPGMDVIKKICGL 109

[Close]

BLAST of Lsi06G010280 vs. ExPASy TrEMBL
Match: A0A5A7U4A7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G00450 PE=4 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 1.4e-37
Identity = 85/106 (80.19%), Postives = 95/106 (89.62%), Query Frame = 0


Query: 3   AKTMIASTIRLALVFLVCIVILTPSVTARTIAAAPSPLVL---EDLSFSNCAPFILEATL 62
           AK+  ASTIRLALVFLVCIVIL PSVTA T+A APSPL++   +D SFSNCAPFILEAT+
Sbjct: 4   AKSTSASTIRLALVFLVCIVILAPSVTAHTMAEAPSPLLVLLDQDSSFSNCAPFILEATM 63

Query: 63  CVVDVIKLPVAPHPACCKAISELNDCSPEIYQHISGMDVIKKICGL 106
           C+VDVIKLPVAPHP+CCKAIS+LNDC+PEIY HI GMDVIKKICGL
Sbjct: 64  CMVDVIKLPVAPHPSCCKAISDLNDCAPEIYHHIPGMDVIKKICGL 109

[Close]

BLAST of Lsi06G010280 vs. ExPASy TrEMBL
Match: A0A0A0LTD6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G263450 PE=4 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 4.6e-36
Identity = 85/110 (77.27%), Postives = 97/110 (88.18%), Query Frame = 0


Query: 1   MEA-KTMIASTIRLALVFLVCIVILTPSVTARTIAAAPSPLVL----EDLSFSNCAPFIL 60
           MEA K+  ASTIRLA+VFLVCIVIL PSVTART+A APSP+++    +D SFSNCAPFIL
Sbjct: 1   MEATKSTSASTIRLAIVFLVCIVILAPSVTARTMAEAPSPVLVLFDEDDSSFSNCAPFIL 60

Query: 61  EATLCVVDVIKLPVAPHPACCKAISELNDCSPEIYQHISGMDVIKKICGL 106
           EAT+CVVDVIKLPVA HP+CCKAIS+LNDC+P+IYQHI  MDVIKKICGL
Sbjct: 61  EATMCVVDVIKLPVASHPSCCKAISDLNDCAPQIYQHIPDMDVIKKICGL 110

[Close]

BLAST of Lsi06G010280 vs. ExPASy TrEMBL
Match: A0A5A7U475 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G00490 PE=4 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 2.1e-33
Identity = 74/104 (71.15%), Postives = 86/104 (82.69%), Query Frame = 0


Query: 2   EAKTMIASTIRLALVFLVCIVILTPSVTARTIAAAPSPLVLEDLSFSNCAPFILEATLCV 61
           E + M    ++++L FLV + IL PS TA T+AAAPSPL LEDLSFSNC PFIL+AT+CV
Sbjct: 3   ENRGMSTFIMKISLTFLVGMAILAPSATATTVAAAPSPLALEDLSFSNCTPFILDATMCV 62

Query: 62  VDVIKLPVAPHPACCKAISELNDCSPEIYQHISGMDVIKKICGL 106
           V VIK PVAPHP+CCKAIS+LNDCSPE+YQHI GMDVIKKIC L
Sbjct: 63  VSVIKFPVAPHPSCCKAISDLNDCSPEVYQHIPGMDVIKKICSL 106

[Close]

BLAST of Lsi06G010280 vs. ExPASy TrEMBL
Match: A0A5A7U9A1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold367G00160 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 6.0e-28
Identity = 72/108 (66.67%), Postives = 83/108 (76.85%), Query Frame = 0


Query: 1   MEAKTMIASTIRLALVFLVCIVILTPSVT-ARTIAAAPSPLVLEDLSFSNCAPFILEATL 60
           M A+++  S ++L LVFLVCI IL PS T A T AAAPSP V ++  F  CAPFILEATL
Sbjct: 1   MAAQSLNVSAMKLVLVFLVCIAILAPSTTMADTTAAAPSPSVPQNFPFLKCAPFILEATL 60

Query: 61  CVVDVIKLPVAPHPACCKAISELNDCSPEIYQHISG--MDVIKKICGL 106
           CV DVIK P+APHP+CCKAIS+LNDC+PEIYQ I    MDVIKKIC L
Sbjct: 61  CVTDVIKFPIAPHPSCCKAISKLNDCAPEIYQKIPSPDMDVIKKICSL 108

[Close]

BLAST of Lsi06G010280 vs. NCBI nr
Match: TYK10344.1 (hypothetical protein E5676_scaffold367G00200 [Cucumis melo var. makuwa])

HSP 1 Score: 167.2 bits (422), Expect = 7.8e-38
Identity = 86/106 (81.13%), Postives = 96/106 (90.57%), Query Frame = 0


Query: 3   AKTMIASTIRLALVFLVCIVILTPSVTARTIAAAPSPLVL---EDLSFSNCAPFILEATL 62
           AK+  ASTIRLALVFLVCIVIL PSVTA T+A APSPL++   +D SFSNCAPFILEAT+
Sbjct: 4   AKSTSASTIRLALVFLVCIVILAPSVTAHTMAEAPSPLLVLLDQDSSFSNCAPFILEATM 63

Query: 63  CVVDVIKLPVAPHPACCKAISELNDCSPEIYQHISGMDVIKKICGL 106
           C+VDVIKLPVAPHP+CCKAIS+LNDC+PEIYQHI GMDVIKKICGL
Sbjct: 64  CMVDVIKLPVAPHPSCCKAISDLNDCAPEIYQHIPGMDVIKKICGL 109

[Close]

BLAST of Lsi06G010280 vs. NCBI nr
Match: KAA0050064.1 (hypothetical protein E6C27_scaffold675G00450 [Cucumis melo var. makuwa])

HSP 1 Score: 165.2 bits (417), Expect = 3.0e-37
Identity = 85/106 (80.19%), Postives = 95/106 (89.62%), Query Frame = 0


Query: 3   AKTMIASTIRLALVFLVCIVILTPSVTARTIAAAPSPLVL---EDLSFSNCAPFILEATL 62
           AK+  ASTIRLALVFLVCIVIL PSVTA T+A APSPL++   +D SFSNCAPFILEAT+
Sbjct: 4   AKSTSASTIRLALVFLVCIVILAPSVTAHTMAEAPSPLLVLLDQDSSFSNCAPFILEATM 63

Query: 63  CVVDVIKLPVAPHPACCKAISELNDCSPEIYQHISGMDVIKKICGL 106
           C+VDVIKLPVAPHP+CCKAIS+LNDC+PEIY HI GMDVIKKICGL
Sbjct: 64  CMVDVIKLPVAPHPSCCKAISDLNDCAPEIYHHIPGMDVIKKICGL 109

[Close]

BLAST of Lsi06G010280 vs. NCBI nr
Match: KAA0050068.1 (hypothetical protein E6C27_scaffold675G00490 [Cucumis melo var. makuwa])

HSP 1 Score: 151.4 bits (381), Expect = 4.4e-33
Identity = 74/104 (71.15%), Postives = 86/104 (82.69%), Query Frame = 0


Query: 2   EAKTMIASTIRLALVFLVCIVILTPSVTARTIAAAPSPLVLEDLSFSNCAPFILEATLCV 61
           E + M    ++++L FLV + IL PS TA T+AAAPSPL LEDLSFSNC PFIL+AT+CV
Sbjct: 3   ENRGMSTFIMKISLTFLVGMAILAPSATATTVAAAPSPLALEDLSFSNCTPFILDATMCV 62

Query: 62  VDVIKLPVAPHPACCKAISELNDCSPEIYQHISGMDVIKKICGL 106
           V VIK PVAPHP+CCKAIS+LNDCSPE+YQHI GMDVIKKIC L
Sbjct: 63  VSVIKFPVAPHPSCCKAISDLNDCSPEVYQHIPGMDVIKKICSL 106

[Close]

BLAST of Lsi06G010280 vs. NCBI nr
Match: KAA0050069.1 (hypothetical protein E6C27_scaffold675G00500 [Cucumis melo var. makuwa] >TYK10341.1 hypothetical protein E5676_scaffold367G00160 [Cucumis melo var. makuwa])

HSP 1 Score: 133.3 bits (334), Expect = 1.2e-27
Identity = 72/108 (66.67%), Postives = 83/108 (76.85%), Query Frame = 0


Query: 1   MEAKTMIASTIRLALVFLVCIVILTPSVT-ARTIAAAPSPLVLEDLSFSNCAPFILEATL 60
           M A+++  S ++L LVFLVCI IL PS T A T AAAPSP V ++  F  CAPFILEATL
Sbjct: 1   MAAQSLNVSAMKLVLVFLVCIAILAPSTTMADTTAAAPSPSVPQNFPFLKCAPFILEATL 60

Query: 61  CVVDVIKLPVAPHPACCKAISELNDCSPEIYQHISG--MDVIKKICGL 106
           CV DVIK P+APHP+CCKAIS+LNDC+PEIYQ I    MDVIKKIC L
Sbjct: 61  CVTDVIKFPIAPHPSCCKAISKLNDCAPEIYQKIPSPDMDVIKKICSL 108

[Close]

BLAST of Lsi06G010280 vs. NCBI nr
Match: TYK10334.1 (hypothetical protein E5676_scaffold367G00080 [Cucumis melo var. makuwa])

HSP 1 Score: 120.6 bits (301), Expect = 8.4e-24
Identity = 65/98 (66.33%), Postives = 75/98 (76.53%), Query Frame = 0


Query: 11  IRLALVFLVCIVILTPSVT-ARTIAAAPSPLVLEDLSFSNCAPFILEATLCVVDVIKLPV 70
           ++L LVFLVCI IL PS T A T AAAPSP V ++  F  CAPFILEATLCV  VIK P+
Sbjct: 1   MKLVLVFLVCIAILAPSTTMAGTTAAAPSPSVPQNFPFLKCAPFILEATLCVTGVIKFPI 60

Query: 71  APHPACCKAISELNDCSPEIYQHI--SGMDVIKKICGL 106
           APHP+CCKAIS+L DC+P+IYQ I  S M+VIKK C L
Sbjct: 61  APHPSCCKAISKLKDCAPDIYQKIPSSDMNVIKKTCSL 98

The following BLAST results are available for this feature:

BLAST of Lsi06G010280 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi06G010280 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CGL7	3.8e-38	81.13	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7U4A7	1.4e-37	80.19	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A0A0LTD6	4.6e-36	77.27	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G263450 PE=4 SV=1	[more]
A0A5A7U475	2.1e-33	71.15	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7U9A1	6.0e-28	66.67	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of Lsi06G010280 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK10344.1	7.8e-38	81.13	hypothetical protein E5676_scaffold367G00200 [Cucumis melo var. makuwa]	[more]
KAA0050064.1	3.0e-37	80.19	hypothetical protein E6C27_scaffold675G00450 [Cucumis melo var. makuwa]	[more]
KAA0050068.1	4.4e-33	71.15	hypothetical protein E6C27_scaffold675G00490 [Cucumis melo var. makuwa]	[more]
KAA0050069.1	1.2e-27	66.67	hypothetical protein E6C27_scaffold675G00500 [Cucumis melo var. makuwa] >TYK1034...	[more]
TYK10334.1	8.4e-24	66.33	hypothetical protein E5676_scaffold367G00080 [Cucumis melo var. makuwa]	[more]

BLAST of Lsi06G010280 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi06G010280.1	Lsi06G010280.1	mRNA