Lsi06G010260 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi06G010260
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Unknown protein
Location	chr06: 20432332 .. 20432661 (-)
RNA-Seq Expression	Lsi06G010260
Synteny	Lsi06G010260

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGTACTCATTGAATGCATCTACGATAAAGCTATCACTTGTATTTTTAGTCTGCATAGTCATTTTAGCATCACCGACAATGGCACACACTATGGTGGCACAGCCTGATTCAACCACATTAGAAGGTTTCTCATTGTTCGGCTGCACATCGTTTATTTCCGAGGCACCAAAATGTGTGATTGATAATTTGAAGAACGCAGTTGCTCCTCATCCGTCATGTTGCAAAGCCATTTCTAAGCTCAACGATTGTTCCTCTGAGTTTTTCAAAGGCATTCCCTCTGCTGACATGATTTTGATTAAGGGCATTTGTGCTTTGTGGGGTGTTTGA

mRNA sequence

ATGGAGTACTCATTGAATGCATCTACGATAAAGCTATCACTTGTATTTTTAGTCTGCATAGTCATTTTAGCATCACCGACAATGGCACACACTATGGTGGCACAGCCTGATTCAACCACATTAGAAGGTTTCTCATTGTTCGGCTGCACATCGTTTATTTCCGAGGCACCAAAATGTGTGATTGATAATTTGAAGAACGCAGTTGCTCCTCATCCGTCATGTTGCAAAGCCATTTCTAAGCTCAACGATTGTTCCTCTGAGTTTTTCAAAGGCATTCCCTCTGCTGACATGATTTTGATTAAGGGCATTTGTGCTTTGTGGGGTGTTTGA

Coding sequence (CDS)

ATGGAGTACTCATTGAATGCATCTACGATAAAGCTATCACTTGTATTTTTAGTCTGCATAGTCATTTTAGCATCACCGACAATGGCACACACTATGGTGGCACAGCCTGATTCAACCACATTAGAAGGTTTCTCATTGTTCGGCTGCACATCGTTTATTTCCGAGGCACCAAAATGTGTGATTGATAATTTGAAGAACGCAGTTGCTCCTCATCCGTCATGTTGCAAAGCCATTTCTAAGCTCAACGATTGTTCCTCTGAGTTTTTCAAAGGCATTCCCTCTGCTGACATGATTTTGATTAAGGGCATTTGTGCTTTGTGGGGTGTTTGA

Protein sequence

MEYSLNASTIKLSLVFLVCIVILASPTMAHTMVAQPDSTTLEGFSLFGCTSFISEAPKCVIDNLKNAVAPHPSCCKAISKLNDCSSEFFKGIPSADMILIKGICALWGV

Homology

[Close]

BLAST of Lsi06G010260 vs. ExPASy TrEMBL
Match: A0A5A7U483 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G00620 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 1.1e-32
Identity = 77/103 (74.76%), Postives = 82/103 (79.61%), Query Frame = 0


Query: 8   STIKLSLVFLVCIVILASPTMAHTMVAQP-DSTTLEGFSLFGCTSFISEAPKCVIDNLKN 67
           ++IKL LVF VC+ ILA   +AHT  A P D  T E  SL GCTSFISEA KCVID +KN
Sbjct: 2   ASIKLPLVFFVCMAILAVSGIAHTGAAAPSDPFTAEKLSLLGCTSFISEATKCVIDVMKN 61

Query: 68  AVAPHPSCCKAISKLNDCSSEFFKGIPSADMILIKGICALWGV 110
           AVAPHPSCCKA SKLNDCS EF KGIPSADMILIKGICALWGV
Sbjct: 62  AVAPHPSCCKAFSKLNDCSPEFLKGIPSADMILIKGICALWGV 104

[Close]

BLAST of Lsi06G010260 vs. ExPASy TrEMBL
Match: A0A5D3CG41 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold367G00010 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 1.1e-32
Identity = 77/103 (74.76%), Postives = 82/103 (79.61%), Query Frame = 0


Query: 8   STIKLSLVFLVCIVILASPTMAHTMVAQP-DSTTLEGFSLFGCTSFISEAPKCVIDNLKN 67
           ++IKL LVF VC+ ILA   +AHT  A P D  T E  SL GCTSFISEA KCVID +KN
Sbjct: 2   ASIKLPLVFFVCMAILAVSGIAHTGAAAPSDPFTAEELSLLGCTSFISEATKCVIDVMKN 61

Query: 68  AVAPHPSCCKAISKLNDCSSEFFKGIPSADMILIKGICALWGV 110
           AVAPHPSCCKA SKLNDCS EF KGIPSADMILIKGICALWGV
Sbjct: 62  AVAPHPSCCKAFSKLNDCSPEFLKGIPSADMILIKGICALWGV 104

[Close]

BLAST of Lsi06G010260 vs. ExPASy TrEMBL
Match: A0A5D3CFS6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold367G00210 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 1.2e-26
Identity = 64/99 (64.65%), Postives = 74/99 (74.75%), Query Frame = 0


Query: 11  KLSLVFLVCIVILASPTMAHTMVAQPDSTTLEGFSLFGCTSFISEAPKCVIDNLKNAVAP 70
           KL LV LVCI ILAS   A   +    + T E FSLF C SF+ +A KCVID LKNAVAP
Sbjct: 8   KLPLVLLVCIAILASSVTARPTIVAAATPTSEDFSLFPCISFVPKATKCVIDVLKNAVAP 67

Query: 71  HPSCCKAISKLNDCSSEFFKGIPSADMILIKGICALWGV 110
           HPSCC+AIS+L+DCSS+F K IPS+DMIL+K ICA WGV
Sbjct: 68  HPSCCEAISQLHDCSSQFLKDIPSSDMILVKSICASWGV 106

[Close]

BLAST of Lsi06G010260 vs. ExPASy TrEMBL
Match: A0A5A7U9B0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G00630 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 1.1e-24
Identity = 61/99 (61.62%), Postives = 71/99 (71.72%), Query Frame = 0


Query: 11  KLSLVFLVCIVILASPTMAHTMVAQPDSTTLEGFSLFGCTSFISEAPKCVIDNLKNAVAP 70
           KL LV  VCI ILAS   A   +    + T E FSLF C SF+ +A KCVID LKN VAP
Sbjct: 8   KLPLVLRVCIAILASSVTACPTIVAAATPTSEDFSLFPCISFVPKATKCVIDVLKNVVAP 67

Query: 71  HPSCCKAISKLNDCSSEFFKGIPSADMILIKGICALWGV 110
           HPSCC+AI++L+DCSS+F K IPS DMIL+K ICA WGV
Sbjct: 68  HPSCCEAITQLHDCSSQFLKDIPSGDMILVKSICASWGV 106

[Close]

BLAST of Lsi06G010260 vs. ExPASy TrEMBL
Match: A0A5D3CEQ4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold367G00180 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 5.5e-24
Identity = 63/103 (61.17%), Postives = 73/103 (70.87%), Query Frame = 0


Query: 7   ASTIKLSLVFLVCIVILASPTMAHTMVAQPDSTTLEGFSLFGCTSFISEAPKCVIDNLKN 66
           AS  KL L  L CI ILAS  MA   V    +  +   SLF C SF+ +A +CVID LKN
Sbjct: 3   ASFTKLPLALLFCIFILASSVMARP-VTVAAAAPIGDISLFPCKSFVPKATECVIDVLKN 62

Query: 67  AVAPHPSCCKAISKLNDCSSEFFKGIPSADMILIKGICALWGV 110
           AVAPHPSCC+AIS+L+DCSS+F K IPS DMIL+K ICALWGV
Sbjct: 63  AVAPHPSCCQAISELHDCSSQFLKDIPSVDMILVKSICALWGV 104

[Close]

BLAST of Lsi06G010260 vs. NCBI nr
Match: KAE8653021.1 (hypothetical protein Csa_004567 [Cucumis sativus])

HSP 1 Score: 151.0 bits (380), Expect = 6.0e-33
Identity = 77/103 (74.76%), Postives = 84/103 (81.55%), Query Frame = 0


Query: 8   STIKLSLVFLVCIVILASPTMAHT-MVAQPDSTTLEGFSLFGCTSFISEAPKCVIDNLKN 67
           +++KL LVFLVCI ILA   MAHT  +A  D  T E FSL GCTSFISEA  C++D +KN
Sbjct: 2   ASMKLPLVFLVCIAILAVSGMAHTGALAPADPFTAEEFSLLGCTSFISEATNCMVDVMKN 61

Query: 68  AVAPHPSCCKAISKLNDCSSEFFKGIPSADMILIKGICALWGV 110
           AVAPHPSCCKA SKLNDCSSEF KGIPSADMILIKGICALWGV
Sbjct: 62  AVAPHPSCCKAFSKLNDCSSEFLKGIPSADMILIKGICALWGV 104

[Close]

BLAST of Lsi06G010260 vs. NCBI nr
Match: TYK10330.1 (hypothetical protein E5676_scaffold367G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 149.1 bits (375), Expect = 2.3e-32
Identity = 77/103 (74.76%), Postives = 82/103 (79.61%), Query Frame = 0


Query: 8   STIKLSLVFLVCIVILASPTMAHTMVAQP-DSTTLEGFSLFGCTSFISEAPKCVIDNLKN 67
           ++IKL LVF VC+ ILA   +AHT  A P D  T E  SL GCTSFISEA KCVID +KN
Sbjct: 2   ASIKLPLVFFVCMAILAVSGIAHTGAAAPSDPFTAEELSLLGCTSFISEATKCVIDVMKN 61

Query: 68  AVAPHPSCCKAISKLNDCSSEFFKGIPSADMILIKGICALWGV 110
           AVAPHPSCCKA SKLNDCS EF KGIPSADMILIKGICALWGV
Sbjct: 62  AVAPHPSCCKAFSKLNDCSPEFLKGIPSADMILIKGICALWGV 104

[Close]

BLAST of Lsi06G010260 vs. NCBI nr
Match: KAA0050078.1 (hypothetical protein E6C27_scaffold675G00620 [Cucumis melo var. makuwa])

HSP 1 Score: 149.1 bits (375), Expect = 2.3e-32
Identity = 77/103 (74.76%), Postives = 82/103 (79.61%), Query Frame = 0


Query: 8   STIKLSLVFLVCIVILASPTMAHTMVAQP-DSTTLEGFSLFGCTSFISEAPKCVIDNLKN 67
           ++IKL LVF VC+ ILA   +AHT  A P D  T E  SL GCTSFISEA KCVID +KN
Sbjct: 2   ASIKLPLVFFVCMAILAVSGIAHTGAAAPSDPFTAEKLSLLGCTSFISEATKCVIDVMKN 61

Query: 68  AVAPHPSCCKAISKLNDCSSEFFKGIPSADMILIKGICALWGV 110
           AVAPHPSCCKA SKLNDCS EF KGIPSADMILIKGICALWGV
Sbjct: 62  AVAPHPSCCKAFSKLNDCSPEFLKGIPSADMILIKGICALWGV 104

[Close]

BLAST of Lsi06G010260 vs. NCBI nr
Match: KAG6589812.1 (hypothetical protein SDJN03_15235, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 131.0 bits (328), Expect = 6.4e-27
Identity = 66/100 (66.00%), Postives = 74/100 (74.00%), Query Frame = 0


Query: 10  IKLSLVFLVCIVILASPTMAHTMVAQPDSTTLEGFSLFGCTSFISEAPKCVIDNLKNAVA 69
           +KL+   LVCI ILASP MA      PD    EGFSLFGCTS +SE  KCV+D +K AVA
Sbjct: 1   MKLAAACLVCIAILASPAMA------PDPFAAEGFSLFGCTSAVSEMTKCVVDVMKQAVA 60

Query: 70  PHPSCCKAISKLNDCSSEFFKGIPSADMILIKGICALWGV 110
           PHPSCC+AISKLN CSS F K +PSADM LIK +CALWGV
Sbjct: 61  PHPSCCRAISKLNRCSSVFLKDVPSADMFLIKTVCALWGV 94

[Close]

BLAST of Lsi06G010260 vs. NCBI nr
Match: TYK10345.1 (hypothetical protein E5676_scaffold367G00210 [Cucumis melo var. makuwa])

HSP 1 Score: 129.0 bits (323), Expect = 2.4e-26
Identity = 64/99 (64.65%), Postives = 74/99 (74.75%), Query Frame = 0


Query: 11  KLSLVFLVCIVILASPTMAHTMVAQPDSTTLEGFSLFGCTSFISEAPKCVIDNLKNAVAP 70
           KL LV LVCI ILAS   A   +    + T E FSLF C SF+ +A KCVID LKNAVAP
Sbjct: 8   KLPLVLLVCIAILASSVTARPTIVAAATPTSEDFSLFPCISFVPKATKCVIDVLKNAVAP 67

Query: 71  HPSCCKAISKLNDCSSEFFKGIPSADMILIKGICALWGV 110
           HPSCC+AIS+L+DCSS+F K IPS+DMIL+K ICA WGV
Sbjct: 68  HPSCCEAISQLHDCSSQFLKDIPSSDMILVKSICASWGV 106

The following BLAST results are available for this feature:

BLAST of Lsi06G010260 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi06G010260 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U483	1.1e-32	74.76	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3CG41	1.1e-32	74.76	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3CFS6	1.2e-26	64.65	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7U9B0	1.1e-24	61.62	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3CEQ4	5.5e-24	61.17	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of Lsi06G010260 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8653021.1	6.0e-33	74.76	hypothetical protein Csa_004567 [Cucumis sativus]	[more]
TYK10330.1	2.3e-32	74.76	hypothetical protein E5676_scaffold367G00010 [Cucumis melo var. makuwa]	[more]
KAA0050078.1	2.3e-32	74.76	hypothetical protein E6C27_scaffold675G00620 [Cucumis melo var. makuwa]	[more]
KAG6589812.1	6.4e-27	66.00	hypothetical protein SDJN03_15235, partial [Cucurbita argyrosperma subsp. sorori...	[more]
TYK10345.1	2.4e-26	64.65	hypothetical protein E5676_scaffold367G00210 [Cucumis melo var. makuwa]	[more]

BLAST of Lsi06G010260 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi06G010260.1	Lsi06G010260.1	mRNA