Lsi06G010080 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi06G010080
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUPF0481 protein At3g47200-like
Locationchr06: 20170361 .. 20171054 (+)
RNA-Seq ExpressionLsi06G010080
SyntenyLsi06G010080
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTATAAGTAAATATGAAATTTGTTATGAGTTGTTGGAAGAACCAACCCACTTAGTGGATTTCTTCTGCTTCCACTTCTTTCCCTTACCTCATCGTGATATCAACAACAAACACATCAATGAGGAAAACACTAAGAAAAAGCCATGGATTCAGCCTCCACCGATATCTGAGCTCTACGAGGTTGATGTCACCATCAAGAAAGTAGAAAACACCAAATATTTGATGAACATAAGCTTTAAAAATGGGGTTTTGGAAATCCCAACTTTATTTATTGATGATTCTTTTGAATTCGTTATGTGAAACCTAATAGTGTTTGAGCATTTTCCTGCAAGAAATAAGATCAACTATGTAACCTAATATGTGTCATTTCTGGATGATTTGAGAAGTACAGAGAAAGACGTGCGCTTACTTGTGAATGCTGAAGTCCTAATGAACAAAATTGGCGGCAGTTATCAAGTTTCAGACCTGTTAAACAATCTCTGTAAATTTGTCACAATCTCAACTTATTCTTCCCACTTTGATGATATTAGCAAAGATTTATGCACTACAATGGATGGTGGAACAAGTCCAAGCTTCACTCAAACATAACTATTTCAATACGCCATGGGCTTTGATCTCCTTCTCTGCTACAACCTTCCTCATTCTTCTCACCATCCTTCAAACCATATTCTCTGTTATAGCTGCATTTCCTAAC

mRNA sequence

TTTATAAGTAAATATGAAATTTGTTATGAGTTGTTGGAAGAACCAACCCACTTAGTGGATTTCTTCTGCTTCCACTTCTTTCCCTTACCTCATCGTGATATCAACAACAAACACATCAATGAGGAAAACACTAAGAAAAAGCCATGGATTCAGCCTCCACCGATATCTGAGCTCTACGAGGTTGATGTCACCATCAAGAAAATTTATGCACTACAATGGATGGTGGAACAAGTCCAAGCTTCACTCAAACATAACTATTTCAATACGCCATGGGCTTTGATCTCCTTCTCTGCTACAACCTTCCTCATTCTTCTCACCATCCTTCAAACCATATTCTCTGTTATAGCTGCATTTCCTAAC

Coding sequence (CDS)

TTTATAAGTAAATATGAAATTTGTTATGAGTTGTTGGAAGAACCAACCCACTTAGTGGATTTCTTCTGCTTCCACTTCTTTCCCTTACCTCATCGTGATATCAACAACAAACACATCAATGAGGAAAACACTAAGAAAAAGCCATGGATTCAGCCTCCACCGATATCTGAGCTCTACGAGGTTGATGTCACCATCAAGAAAATTTATGCACTACAATGGATGGTGGAACAAGTCCAAGCTTCACTCAAACATAACTATTTCAATACGCCATGGGCTTTGATCTCCTTCTCTGCTACAACCTTCCTCATTCTTCTCACCATCCTTCAAACCATATTCTCTGTTATAGCTGCATTTCCTAAC

Protein sequence

FISKYEICYELLEEPTHLVDFFCFHFFPLPHRDINNKHINEENTKKKPWIQPPPISELYEVDVTIKKIYALQWMVEQVQASLKHNYFNTPWALISFSATTFLILLTILQTIFSVIAAFPN
Homology
[Close]
BLAST of Lsi06G010080 vs. ExPASy TrEMBL
Match: A0A0A0LPJ5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G380630 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 4.2e-09
Identity = 40/86 (46.51%), Postives = 52/86 (60.47%), Query Frame = 0 

Query: 35  NNKHINEENTKKKPWIQPPPISELYEVDVTIKKIYALQWMVEQVQASLKHNYFNTPWALI 94
           ++K I E       ++  P  S   ++   ++K    +W   +  ASLKHNYFNTPWA+I
Sbjct: 312 SDKDITEMFNNLSKYVTFPVCSHFDDISKDLRKHCNKRW--NKAIASLKHNYFNTPWAII 371

Query: 95  SFSATTFLILLTILQTIFSVIAAFPN 121
           SF A T LI LTILQTIFS I+ FPN
Sbjct: 372 SFLAATILIFLTILQTIFSAISTFPN 395

[Close]
BLAST of Lsi06G010080 vs. ExPASy TrEMBL
Match: A0A0A0LQ57 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G380610 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 4.2e-09
Identity = 34/44 (77.27%), Postives = 40/44 (90.91%), Query Frame = 0 

Query: 77  QVQASLKHNYFNTPWALISFSATTFLILLTILQTIFSVIAAFPN 121
           + +ASLKH+YFNTPWA+ISF A TFLI+LTILQTIFS I+AFPN
Sbjct: 432 KAKASLKHSYFNTPWAIISFFAATFLIILTILQTIFSAISAFPN 475

[Close]
BLAST of Lsi06G010080 vs. ExPASy TrEMBL
Match: A0A5A7VGS6 (UPF0481 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G002590 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 5.5e-09
Identity = 34/44 (77.27%), Postives = 39/44 (88.64%), Query Frame = 0 

Query: 77  QVQASLKHNYFNTPWALISFSATTFLILLTILQTIFSVIAAFPN 121
           + +ASLKHNYFNTPWA+ISF A  FLI+LTILQTIFS I+AFPN
Sbjct: 464 KAKASLKHNYFNTPWAIISFFAAIFLIILTILQTIFSAISAFPN 507

[Close]
BLAST of Lsi06G010080 vs. ExPASy TrEMBL
Match: A0A1S4DVI1 (UPF0481 protein At3g47200-like OS=Cucumis melo OX=3656 GN=LOC103488295 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 5.5e-09
Identity = 34/44 (77.27%), Postives = 39/44 (88.64%), Query Frame = 0 

Query: 77  QVQASLKHNYFNTPWALISFSATTFLILLTILQTIFSVIAAFPN 121
           + +ASLKHNYFNTPWA+ISF A  FLI+LTILQTIFS I+AFPN
Sbjct: 220 KAKASLKHNYFNTPWAIISFFAAIFLIILTILQTIFSAISAFPN 263

[Close]
BLAST of Lsi06G010080 vs. ExPASy TrEMBL
Match: A0A1S4DW65 (UPF0481 protein At3g47200-like OS=Cucumis melo OX=3656 GN=LOC103488289 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 9.4e-09
Identity = 39/86 (45.35%), Postives = 54/86 (62.79%), Query Frame = 0 

Query: 35  NNKHINEENTKKKPWIQPPPISELYEVDVTIKKIYALQWMVEQVQASLKHNYFNTPWALI 94
           ++K I E   +   ++  P  S   +++  ++     +W     +ASLKHNYFNTPWA+I
Sbjct: 443 SDKDITEMFNRFSKFVTFPICSHFDDINKALRMHCNGRW--NMAKASLKHNYFNTPWAII 502

Query: 95  SFSATTFLILLTILQTIFSVIAAFPN 121
           SF A TFLI+LTILQTIFS I+ F N
Sbjct: 503 SFGAATFLIILTILQTIFSAISTFRN 526

[Close]
BLAST of Lsi06G010080 vs. NCBI nr
Match: XP_038890800.1 (UPF0481 protein At3g47200-like [Benincasa hispida])

HSP 1 Score: 77.4 bits (189), Expect = 9.3e-11
Identity = 68/232 (29.31%), Postives = 86/232 (37.07%), Query Frame = 0 

Query: 2   ISKYEICYELLEEPTHLVDFFCFHFFPLPHRDINNKHINEENTKKKPWIQPPPISELYEV 61
           + KYEI  +L +EP HLVD   F+F PLP  D+ NKH   +N ++  WI PP I+EL E 
Sbjct: 246 VRKYEI--DLYKEPKHLVDLLSFYFVPLPLDDMQNKHHGFKNGEEHRWI-PPSITELCEA 305

Query: 62  DVTIKKI-----------------------------------------------YALQWM 121
            VTIKK                                                Y +Q++
Sbjct: 306 GVTIKKAENAKYVTNITFKNGVLEIPPLHIYDEFELMLRNMVAFEQISAGKKNKYVIQYV 365

[Close]
BLAST of Lsi06G010080 vs. NCBI nr
Match: KAE8652198.1 (hypothetical protein Csa_022607, partial [Cucumis sativus])

HSP 1 Score: 70.9 bits (172), Expect = 8.7e-09
Identity = 40/86 (46.51%), Postives = 52/86 (60.47%), Query Frame = 0 

Query: 35  NNKHINEENTKKKPWIQPPPISELYEVDVTIKKIYALQWMVEQVQASLKHNYFNTPWALI 94
           ++K I E       ++  P  S   ++   ++K    +W   +  ASLKHNYFNTPWA+I
Sbjct: 339 SDKDITEMFNNLSKYVTFPVCSHFDDISKDLRKHCNKRW--NKAIASLKHNYFNTPWAII 398

Query: 95  SFSATTFLILLTILQTIFSVIAAFPN 121
           SF A T LI LTILQTIFS I+ FPN
Sbjct: 399 SFLAATILIFLTILQTIFSAISTFPN 422

[Close]
BLAST of Lsi06G010080 vs. NCBI nr
Match: XP_031737062.1 (UPF0481 protein At3g47200 [Cucumis sativus])

HSP 1 Score: 70.9 bits (172), Expect = 8.7e-09
Identity = 34/44 (77.27%), Postives = 40/44 (90.91%), Query Frame = 0 

Query: 77  QVQASLKHNYFNTPWALISFSATTFLILLTILQTIFSVIAAFPN 121
           + +ASLKH+YFNTPWA+ISF A TFLI+LTILQTIFS I+AFPN
Sbjct: 432 KAKASLKHSYFNTPWAIISFFAATFLIILTILQTIFSAISAFPN 475

[Close]
BLAST of Lsi06G010080 vs. NCBI nr
Match: XP_011650198.1 (UPF0481 protein At3g47200 [Cucumis sativus])

HSP 1 Score: 70.9 bits (172), Expect = 8.7e-09
Identity = 40/86 (46.51%), Postives = 52/86 (60.47%), Query Frame = 0 

Query: 35  NNKHINEENTKKKPWIQPPPISELYEVDVTIKKIYALQWMVEQVQASLKHNYFNTPWALI 94
           ++K I E       ++  P  S   ++   ++K    +W   +  ASLKHNYFNTPWA+I
Sbjct: 325 SDKDITEMFNNLSKYVTFPVCSHFDDISKDLRKHCNKRW--NKAIASLKHNYFNTPWAII 384

Query: 95  SFSATTFLILLTILQTIFSVIAAFPN 121
           SF A T LI LTILQTIFS I+ FPN
Sbjct: 385 SFLAATILIFLTILQTIFSAISTFPN 408

[Close]
BLAST of Lsi06G010080 vs. NCBI nr
Match: KAA0064941.1 (UPF0481 protein [Cucumis melo var. makuwa])

HSP 1 Score: 70.5 bits (171), Expect = 1.1e-08
Identity = 34/44 (77.27%), Postives = 39/44 (88.64%), Query Frame = 0 

Query: 77  QVQASLKHNYFNTPWALISFSATTFLILLTILQTIFSVIAAFPN 121
           + +ASLKHNYFNTPWA+ISF A  FLI+LTILQTIFS I+AFPN
Sbjct: 464 KAKASLKHNYFNTPWAIISFFAAIFLIILTILQTIFSAISAFPN 507

[Close]
BLAST of Lsi06G010080 vs. TAIR 10
Match: AT3G50170.1 (Plant protein of unknown function (DUF247) )

HSP 1 Score: 49.7 bits (117), Expect = 1.9e-06
Identity = 28/69 (40.58%), Postives = 41/69 (59.42%), Query Frame = 0 

Query: 53  PPISELYEVDVTIKKIYALQWMVEQVQASLKHNYFNTPWALISFSATTFLILLTILQTIF 112
           P  S L  +   + + Y  +W V  ++A+L H YFN PWA  SFSA   L+LLT+ Q+ +
Sbjct: 472 PKDSHLSRLSGDVNRYYNRKWNV--LKATLTHKYFNNPWAYFSFSAAVILLLLTLCQSFY 531

Query: 113 SVIAAF-PN 121
           +V A + PN
Sbjct: 532 AVYAYYKPN 538

[Close]
BLAST of Lsi06G010080 vs. TAIR 10
Match: AT3G50120.1 (Plant protein of unknown function (DUF247) )

HSP 1 Score: 46.6 bits (109), Expect = 1.6e-05
Identity = 23/63 (36.51%), Postives = 38/63 (60.32%), Query Frame = 0 

Query: 56  SELYEVDVTIKKIYALQWMVEQVQASLKHNYFNTPWALISFSATTFLILLTILQTIFSVI 115
           S L  + + + + Y  +W     +A+LKH YFN PWA++SF A   L++LT  Q+ ++V 
Sbjct: 467 SYLSRLSIEVNRYYDHKW--NAWRATLKHKYFNNPWAIVSFCAAVILLVLTFSQSFYAVY 526

Query: 116 AAF 119
           A +
Sbjct: 527 AYY 527

[Close]
BLAST of Lsi06G010080 vs. TAIR 10
Match: AT3G50150.1 (Plant protein of unknown function (DUF247) )

HSP 1 Score: 45.1 bits (105), Expect = 4.8e-05
Identity = 25/72 (34.72%), Postives = 39/72 (54.17%), Query Frame = 0 

Query: 47  KPWIQPPPISELYEVDVTIKKIYALQWMVEQVQASLKHNYFNTPWALISFSATTFLILLT 106
           K  I  P    L ++   + + Y+ +W    ++A+L+  YFN PWA  SFSA   L+ LT
Sbjct: 436 KEVIFDPKDGYLSQLSREVNRYYSRKW--NSLKATLRQKYFNNPWAYFSFSAAVILLFLT 495

Query: 107 ILQTIFSVIAAF 119
             Q+ F+V A +
Sbjct: 496 FFQSFFAVYAYY 505

[Close]
BLAST of Lsi06G010080 vs. TAIR 10
Match: AT3G50140.1 (Plant protein of unknown function (DUF247) )

HSP 1 Score: 45.1 bits (105), Expect = 4.8e-05
Identity = 23/56 (41.07%), Postives = 35/56 (62.50%), Query Frame = 0 

Query: 58  LYEVDVTIKKIYALQWMVEQVQASLKHNYFNTPWALISFSATTFLILLTILQTIFS 114
           L E+   + + Y  +W V  ++A+LKH YF+ PWA  SF A   L+LLT+ Q+ F+
Sbjct: 477 LSELSNKVDRYYNRKWNV--LKATLKHKYFSNPWAYFSFFAAVILLLLTLFQSFFT 530

[Close]
BLAST of Lsi06G010080 vs. TAIR 10
Match: AT3G50130.1 (Plant protein of unknown function (DUF247) )

HSP 1 Score: 44.7 bits (104), Expect = 6.2e-05
Identity = 25/66 (37.88%), Postives = 38/66 (57.58%), Query Frame = 0 

Query: 53  PPISELYEVDVTIKKIYALQWMVEQVQASLKHNYFNTPWALISFSATTFLILLTILQTIF 112
           P  S L ++   + + Y+ +W V  ++A LKH YFN PWA  SF A   L++LT+ Q+ F
Sbjct: 497 PQNSYLSQLSNKVDRNYSRKWNV--LKAILKHKYFNNPWAYFSFFAALVLLVLTLFQSFF 556

Query: 113 SVIAAF 119
           +    F
Sbjct: 557 TAYPYF 560

The following BLAST results are available for this feature:
BLAST of Lsi06G010080 vs.
Match NameE-valueIdentityDescription
BLAST of Lsi06G010080 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LPJ54.2e-0946.51Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G380630 PE=4 SV=1[more]
A0A0A0LQ574.2e-0977.27Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G380610 PE=4 SV=1[more]
A0A5A7VGS65.5e-0977.27UPF0481 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G00259... [more]
A0A1S4DVI15.5e-0977.27UPF0481 protein At3g47200-like OS=Cucumis melo OX=3656 GN=LOC103488295 PE=4 SV=1[more]
A0A1S4DW659.4e-0945.35UPF0481 protein At3g47200-like OS=Cucumis melo OX=3656 GN=LOC103488289 PE=4 SV=1[more]
BLAST of Lsi06G010080 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038890800.19.3e-1129.31UPF0481 protein At3g47200-like [Benincasa hispida][more]
KAE8652198.18.7e-0946.51hypothetical protein Csa_022607, partial [Cucumis sativus][more]
XP_031737062.18.7e-0977.27UPF0481 protein At3g47200 [Cucumis sativus][more]
XP_011650198.18.7e-0946.51UPF0481 protein At3g47200 [Cucumis sativus][more]
KAA0064941.11.1e-0877.27UPF0481 protein [Cucumis melo var. makuwa][more]
BLAST of Lsi06G010080 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G50170.11.9e-0640.58Plant protein of unknown function (DUF247) [more]
AT3G50120.11.6e-0536.51Plant protein of unknown function (DUF247) [more]
AT3G50150.14.8e-0534.72Plant protein of unknown function (DUF247) [more]
AT3G50140.14.8e-0541.07Plant protein of unknown function (DUF247) [more]
AT3G50130.16.2e-0537.88Plant protein of unknown function (DUF247) [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi06G010080.1Lsi06G010080.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane