Lsi06G009820 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi06G009820
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Methyl-CpG-binding domain-containing protein 11-like
Location	chr06: 19845189 .. 19847517 (+)
RNA-Seq Expression	Lsi06G009820
Synteny	Lsi06G009820

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAAAAAATTGGGAACGATAAAGAAGAATTTGTTGATCCATCCATCCAACAGCTTAAATGGGTCCCAAATTCCGACCCGAAAAGCCTCTTTTATTGCTCTTTAGGCGCCACAGGTTCGCATTTCTCATCAATTATCCACAACAGATAGCTTTTGGTTGAAACACAGAGAGTGAGACGGCGAGAGCTCTGTCTTTTGCCCCCTTTTTCTTCCTTAGTGGGCATCTCTCTCTTTTCCCCTACTTTTTGATGAGCTTCTTGATTCTCACTTGATTTGGGAAGTTGCAGAACATGGCGAGCACACTGGAAGAACAGGGGTCTAAAGAGGATGTTCTGTTCTTAGAATTGCCTGCTCCTCCTGGTTGGAACAAAAAGGTCTCCCCCATTTACGCTTTTTATCTTACATTAATGTCTCTGCTTTAAACTTCCCTTTGCCCATTTGTTGTGCTGGGAATTTGCTGGCGCTTCTTGTGTTAGAATTTGAAGCTTGACTACACTTATATGTTAGGGCTAATGGGTATCATTGAAATTAAGCACAGTTCTATAACTCTTTTGCTTTGGGGTTAGGGGTTTGGGTTTGGGTTTTTTTCCTTTATAGATTCTGTTGAAACTATCATTTTGTTTAGTACCCATTAGCCAGTTATCTTTTTGGGGTTTGTTGGAAACAGTTGGTGTTGGTTTTGTCTCTTTTCTTTATCATCATACTTTTTTTTCCTCGTTTTGTTTATACTCATTGGAATGTCTTGAACCCGTTATCCGTCACTCCAAATGATCAAGCACACGGTCTTGCTACCTGGTCAATCAGTCAAAGTATAGGGTACCCCTGAAACCTAAACCTAAGTTGTATTTGTATTTATGTTATTTACATTATTTACGATTTTGGCTCTAGGGTTTAAAGGAATGCGTTATATAAACTCTATAACTCTAGAAGCGCTTATCTGAATCTGTAATATGATATTTTCTCTCTAATAATAAACTGTTCTCCCTTGCCTGTAGACGTAGATAACACACTGTTAGTAAATCACGTAAATCTCTGTGTCGATTCTCTACTTTTTATATTTTCTCTTTTATCTTTGATCTTTGATTGTTGATTTCTTAATAATACTTACCTTTTCTCTGAGTGAATGGTTGTTTCTAATTGGGAGACCTTATTAGTATGCAGCTGTTTGGTTCTTAGGTTAATTATAGTGAGGCTGCCTTGGAAGGGTCAGTTGTTACTGATGATGATTTGATTGATGTTAATGAGTTTTGATTAAGTTGAGATAAAATGAGGTGAAAAAATCTTAGTTTATGTGCAGTTTTTGCCCAAGTTAGATGGAATCACTAAGAAAAATGAAATCATCTTCATAGCTCCTACAGGGGAGGAGATTCATAGCAAAAGGCAGCTGGATCAGTATCTGAAATCACACCCTGGTAATCCAGCATCTTCTGAGTTTGATTGGGGTACTGGTGAAACACCTAGAAGATCAGCTAGAATAAGTGAGAAAGCCAAGGCAGCTCCCCCCTCATCTCAAATTGAACGGCCTAAGAAACGAACACGAAAACAAGCTCTTTCGAAGAAGGATGACGATAAAGAGGAAGATGTTGTCCCGTATGGTTTCGAGGAGGCAGGAGTTCATAAGGAAGATGAGACCAATGTCGATGGCAAGGTGAAAGAAATATACGTGGAGGGAAATGATGAAAATAGAAAACCGGAAGATGAGAATGTGAAAGCTGAGACTGTCCCTGCCTCTGCCGAAGTGGCTGAAGAGGGGCGGCGAATTGATGGCGAAGCGGTGCAGGGAAGTGAGGGTCCTAAAGATGCAAGAAAGGAGAATCAAAATTTGGAGGGAACAAAAGGGGTAGAGAAGGTGCAACTTCAAGATGATGCAAAGGAATCCATTTCTACTTGTTCAAGGGATAAGGCAGCCATTCCAGAAGAAACAACAGTTGAAGTGCAAAGAAACAACCAAGACAAACTTAACACAATTGGAAGTAGTGATGTGAATTGATGTGAATTTGTGAAATTGATTTACGGTTCTAGTTCAAACCGTTTTAAACGAGAAAGATATCGGTGTTCGAACGTCATTTACCCAATTGCCCGATTCGTATGCTGAGACATATATATGTAATTATCATTTTTAGGATAGTCATTTGTATCTGTATGTACCATCTTTGTATAAACATTTAGTGTGCAGCAATTTCTGTTACATTTACATTACATGACAGTGTAAATTTTTTTATTTGTTTTTTGAAAGACCATGACAGTGTAATTAGAATGCAGTCTTGTGATGATTTCGTAGTACAGCAGTTAATGATTTTATTGAAGTTAACTTGGAAACCTTATAACC

mRNA sequence

AAAAAAAAAATTGGGAACGATAAAGAAGAATTTGTTGATCCATCCATCCAACAGCTTAAATGGGTCCCAAATTCCGACCCGAAAAGCCTCTTTTATTGCTCTTTAGGCGCCACAGGTTCGCATTTCTCATCAATTATCCACAACAGATAGCTTTTGGTTGAAACACAGAGAGTGAGACGGCGAGAGCTCTGTCTTTTGCCCCCTTTTTCTTCCTTAGTGGGCATCTCTCTCTTTTCCCCTACTTTTTGATGAGCTTCTTGATTCTCACTTGATTTGGGAAGTTGCAGAACATGGCGAGCACACTGGAAGAACAGGGGTCTAAAGAGGATGTTCTGTTCTTAGAATTGCCTGCTCCTCCTGGTTGGAACAAAAAGTTTTTGCCCAAGTTAGATGGAATCACTAAGAAAAATGAAATCATCTTCATAGCTCCTACAGGGGAGGAGATTCATAGCAAAAGGCAGCTGGATCAGTATCTGAAATCACACCCTGGTAATCCAGCATCTTCTGAGTTTGATTGGGGTACTGGTGAAACACCTAGAAGATCAGCTAGAATAAGTGAGAAAGCCAAGGCAGCTCCCCCCTCATCTCAAATTGAACGGCCTAAGAAACGAACACGAAAACAAGCTCTTTCGAAGAAGGATGACGATAAAGAGGAAGATGTTGTCCCGTATGGTTTCGAGGAGGCAGGAGTTCATAAGGAAGATGAGACCAATGTCGATGGCAAGGTGAAAGAAATATACGTGGAGGGAAATGATGAAAATAGAAAACCGGAAGATGAGAATGTGAAAGCTGAGACTGTCCCTGCCTCTGCCGAAGTGGCTGAAGAGGGGCGGCGAATTGATGGCGAAGCGGTGCAGGGAAGTGAGGGTCCTAAAGATGCAAGAAAGGAGAATCAAAATTTGGAGGGAACAAAAGGGGTAGAGAAGGTGCAACTTCAAGATGATGCAAAGGAATCCATTTCTACTTGTTCAAGGGATAAGGCAGCCATTCCAGAAGAAACAACAGTTGAAGTGCAAAGAAACAACCAAGACAAACTTAACACAATTGGAAGTAGTGATGTGAATTGATGTGAATTTGTGAAATTGATTTACGGTTCTAGTTCAAACCGTTTTAAACGAGAAAGATATCGGTGTTCGAACGTCATTTACCCAATTGCCCGATTCGTATGCTGAGACATATATATGTAATTATCATTTTTAGGATAGTCATTTGTATCTGTATGTACCATCTTTGTATAAACATTTAGTGTGCAGCAATTTCTGTTACATTTACATTACATGACAGTGTAAATTTTTTTATTTGTTTTTTGAAAGACCATGACAGTGTAATTAGAATGCAGTCTTGTGATGATTTCGTAGTACAGCAGTTAATGATTTTATTGAAGTTAACTTGGAAACCTTATAACC

Coding sequence (CDS)

ATGGCGAGCACACTGGAAGAACAGGGGTCTAAAGAGGATGTTCTGTTCTTAGAATTGCCTGCTCCTCCTGGTTGGAACAAAAAGTTTTTGCCCAAGTTAGATGGAATCACTAAGAAAAATGAAATCATCTTCATAGCTCCTACAGGGGAGGAGATTCATAGCAAAAGGCAGCTGGATCAGTATCTGAAATCACACCCTGGTAATCCAGCATCTTCTGAGTTTGATTGGGGTACTGGTGAAACACCTAGAAGATCAGCTAGAATAAGTGAGAAAGCCAAGGCAGCTCCCCCCTCATCTCAAATTGAACGGCCTAAGAAACGAACACGAAAACAAGCTCTTTCGAAGAAGGATGACGATAAAGAGGAAGATGTTGTCCCGTATGGTTTCGAGGAGGCAGGAGTTCATAAGGAAGATGAGACCAATGTCGATGGCAAGGTGAAAGAAATATACGTGGAGGGAAATGATGAAAATAGAAAACCGGAAGATGAGAATGTGAAAGCTGAGACTGTCCCTGCCTCTGCCGAAGTGGCTGAAGAGGGGCGGCGAATTGATGGCGAAGCGGTGCAGGGAAGTGAGGGTCCTAAAGATGCAAGAAAGGAGAATCAAAATTTGGAGGGAACAAAAGGGGTAGAGAAGGTGCAACTTCAAGATGATGCAAAGGAATCCATTTCTACTTGTTCAAGGGATAAGGCAGCCATTCCAGAAGAAACAACAGTTGAAGTGCAAAGAAACAACCAAGACAAACTTAACACAATTGGAAGTAGTGATGTGAATTGA

Protein sequence

MASTLEEQGSKEDVLFLELPAPPGWNKKFLPKLDGITKKNEIIFIAPTGEEIHSKRQLDQYLKSHPGNPASSEFDWGTGETPRRSARISEKAKAAPPSSQIERPKKRTRKQALSKKDDDKEEDVVPYGFEEAGVHKEDETNVDGKVKEIYVEGNDENRKPEDENVKAETVPASAEVAEEGRRIDGEAVQGSEGPKDARKENQNLEGTKGVEKVQLQDDAKESISTCSRDKAAIPEETTVEVQRNNQDKLNTIGSSDVN

Homology

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BLAST of Lsi06G009820 vs. ExPASy Swiss-Prot
Match: Q9LW00 (Methyl-CpG-binding domain-containing protein 11 OS=Arabidopsis thaliana OX=3702 GN=MBD11 PE=1 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 8.1e-31
Identity = 102/250 (40.80%), Postives = 138/250 (55.20%), Query Frame = 0


Query: 9   GSKEDVLFLELPAPPGWNKKFLPKLDGITKKNEIIFIAPTGEEIHSKRQLDQYLKSHPGN 68
           G +E+V+ +ELPAP  W K F P   G  KK E++F+APTGEEI +++QL+QYLKSHPGN
Sbjct: 2   GGEEEVVSVELPAPSSWKKLFYPNKVGSVKKTEVVFVAPTGEEISNRKQLEQYLKSHPGN 61

Query: 69  PASSEFDWGTGETPRRSARISEKAKAAPPSSQIERPKKRTR-KQALSKKDDDKEEDVVPY 128
           PA +EFDW T  TPRRSARISEK KA  PS   E PKKR R K  +SKKD + E+     
Sbjct: 62  PAIAEFDWTTSGTPRRSARISEKTKAT-PSPDKEPPKKRGRTKSPVSKKDAEGEKS--EG 121

Query: 129 GFEEAGVHKEDETNVDGKVKE----IYVEGNDENRKPED--ENVKAETVPASAEVAEEGR 188
           G EE    K+ E N    + E        G+ E  +  D  EN+ AE  P +A V EEG 
Sbjct: 122 GGEENSHVKDTEMNPPEGIAENENVTDKNGSGETERVNDAKENIVAEETPNAAPVQEEGE 181

Query: 189 RIDGEAVQGSEGPKDARKENQNLEGTKGVEKVQLQDDAKESISTCSRDKAAIPEETTVEV 248
            +  +A+   +   D  KE    + T  +EK  + D  K+++      K      +  E 
Sbjct: 182 SMKEKALDSVD---DKSKETDKEKDTGSIEKNSV-DVEKKTVEASDEKK-----NSEAET 239

Query: 249 QRNNQDKLNT 252
           + + ++ L T
Sbjct: 242 RNHEENGLTT 239

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BLAST of Lsi06G009820 vs. ExPASy Swiss-Prot
Match: Q9XI36 (Methyl-CpG-binding domain-containing protein 10 OS=Arabidopsis thaliana OX=3702 GN=MBD10 PE=1 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 1.5e-29
Identity = 94/238 (39.50%), Postives = 136/238 (57.14%), Query Frame = 0


Query: 12  EDVLFLELPAPPGWNKKFLPKLDGITKKNEIIFIAPTGEEIHSKRQLDQYLKSHPGNPAS 71
           ++++ +ELPAP  W K F PK  G  +K EI+F+APTGEEI S++QL+QYLK+HPGNP  
Sbjct: 5   DELVSIELPAPASWKKLFYPKRAGTPRKTEIVFVAPTGEEISSRKQLEQYLKAHPGNPVI 64

Query: 72  SEFDWGTGETPRRSARISEKAKAAPPSSQIERPKKRTRKQALSKKDDDKEEDVVPYGFEE 131
           SEF+W TGETPRRS+RIS+K KA  P+   E P  + R+ +L+KKD+ +  +      EE
Sbjct: 65  SEFEWTTGETPRRSSRISQKVKATTPTPDKE-PLLKKRRSSLTKKDNKEAAE----KNEE 124

Query: 132 AGVHKEDETNVDGKV------KEIYVEGNDENRKPEDENVKAETVPASAEVAEEGRRIDG 191
           A V +  + + DGK       KE   EG  E  + E EN + E   A  +V +EG + + 
Sbjct: 125 AAVKENMDVDKDGKTENAEAEKEKEKEGVTEIAEAEKENNEGEKTEAE-KVNKEGEKTEA 184

Query: 192 EAVQGSEGPKDARKENQNLEGTKGVEKVQLQDDAKESISTCSRDKAAIPEETTVEVQR 244
               G EG  +  +  +  EG    EK + ++   E +    RDK    E  T E+++
Sbjct: 185 ----GKEGQTEIAEAEKEKEG----EKAEAENKEAEVV----RDKKESMEVDTSELEK 224

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BLAST of Lsi06G009820 vs. ExPASy TrEMBL
Match: A0A1S3B9A2 (methyl-CpG-binding domain-containing protein 11-like OS=Cucumis melo OX=3656 GN=LOC103487437 PE=4 SV=1)

HSP 1 Score: 327.8 bits (839), Expect = 4.1e-86
Identity = 177/216 (81.94%), Postives = 186/216 (86.11%), Query Frame = 0


Query: 1   MASTLEEQGSKEDVLFLELPAPPGWNKKFLPKLDGITKKNEIIFIAPTGEEIHSKRQLDQ 60
           MASTLE+QGSKEDVLFLELPAPPGWNKKFLPKLDGITKKNEIIFIAPTGEEIH+KRQLDQ
Sbjct: 1   MASTLEKQGSKEDVLFLELPAPPGWNKKFLPKLDGITKKNEIIFIAPTGEEIHNKRQLDQ 60

Query: 61  YLKSHPGNPASSEFDWGTGETPRRSARISEKAKAAPPSSQIERPKKRTRKQALSKKDDDK 120
           YLKSHPGN ASSEFDWGTGETPRRSARISEKAKA PPS  IERPKKRTRKQAL KK +DK
Sbjct: 61  YLKSHPGNLASSEFDWGTGETPRRSARISEKAKATPPSPHIERPKKRTRKQALLKKFEDK 120

Query: 121 EEDVVPYGFEEAGVHKEDETNVDGKVKEIYVEGNDENRKPEDENVKAETVPASAEVAEEG 180
           E  VVP GFEEAGVHKEDETNVD +VKEI VEG  ENRK EDE +KAET P  AE+AEEG
Sbjct: 121 ETVVVPDGFEEAGVHKEDETNVDSEVKEIQVEGKYENRKLEDEKLKAETTPTPAEMAEEG 180

Query: 181 RRID-------GEAVQGSEGPKDARKENQNLEGTKG 210
           R+ D        +  QGSEG +DARKENQNLEGTKG
Sbjct: 181 RQSDDDECKKLAKTKQGSEGSEDARKENQNLEGTKG 216

[Close]

BLAST of Lsi06G009820 vs. ExPASy TrEMBL
Match: A0A5A7U4J5 (Methyl-CpG-binding domain-containing protein 11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold163G001110 PE=4 SV=1)

HSP 1 Score: 327.8 bits (839), Expect = 4.1e-86
Identity = 177/216 (81.94%), Postives = 186/216 (86.11%), Query Frame = 0


Query: 1   MASTLEEQGSKEDVLFLELPAPPGWNKKFLPKLDGITKKNEIIFIAPTGEEIHSKRQLDQ 60
           MASTLE+QGSKEDVLFLELPAPPGWNKKFLPKLDGITKKNEIIFIAPTGEEIH+KRQLDQ
Sbjct: 1   MASTLEKQGSKEDVLFLELPAPPGWNKKFLPKLDGITKKNEIIFIAPTGEEIHNKRQLDQ 60

Query: 61  YLKSHPGNPASSEFDWGTGETPRRSARISEKAKAAPPSSQIERPKKRTRKQALSKKDDDK 120
           YLKSHPGN ASSEFDWGTGETPRRSARISEKAKA PPS  IERPKKRTRKQAL KK +DK
Sbjct: 61  YLKSHPGNLASSEFDWGTGETPRRSARISEKAKATPPSPHIERPKKRTRKQALLKKFEDK 120

Query: 121 EEDVVPYGFEEAGVHKEDETNVDGKVKEIYVEGNDENRKPEDENVKAETVPASAEVAEEG 180
           E  VVP GFEEAGVHKEDETNVD +VKEI VEG  ENRK EDE +KAET P  AE+AEEG
Sbjct: 121 ETVVVPDGFEEAGVHKEDETNVDSEVKEIQVEGKYENRKLEDEKLKAETTPTPAEMAEEG 180

Query: 181 RRID-------GEAVQGSEGPKDARKENQNLEGTKG 210
           R+ D        +  QGSEG +DARKENQNLEGTKG
Sbjct: 181 RQSDDDECKKLAKTKQGSEGSEDARKENQNLEGTKG 216

[Close]

BLAST of Lsi06G009820 vs. ExPASy TrEMBL
Match: A0A6J1CUB2 (methyl-CpG-binding domain-containing protein 11-like OS=Momordica charantia OX=3673 GN=LOC111014413 PE=4 SV=1)

HSP 1 Score: 256.1 bits (653), Expect = 1.5e-64
Identity = 167/290 (57.59%), Postives = 199/290 (68.62%), Query Frame = 0


Query: 1   MASTLEEQGSKEDVLFLELPAPPGWNKKFLPKLDGITKKNEIIFIAPTGEEIHSKRQLDQ 60
           MAST++E GS ED+LFLELPAPPGW KKFLPKLDGITKK EIIF+APTGEEI+ KRQL Q
Sbjct: 18  MASTVKE-GSNEDLLFLELPAPPGWKKKFLPKLDGITKKKEIIFLAPTGEEINGKRQLHQ 77

Query: 61  YLKSHPGNPASSEFDWGTGETPRRSARISEKAKAAPPSSQIERPKKRTRKQALSKKDDDK 120
           YLKSHPGNPASSEFDWGTGETPR+SARISE+ KAA P  +IE PKKRTRK A+SKK DDK
Sbjct: 78  YLKSHPGNPASSEFDWGTGETPRKSARISERVKAA-PLPRIEWPKKRTRKLAVSKK-DDK 137

Query: 121 EEDVVPYGFEEA-GVHKEDETNVDGKVKEIYVEGNDENRKPEDENVKAETVP----ASAE 180
           E DVV  G EEA  VHK+D    +  V +   +GN ENR  +DE+V+    P    AS+E
Sbjct: 138 EADVVLDGSEEARAVHKQDADKYESGVTD--GKGNQENRTLQDEDVETAPAPAPVLASSE 197

Query: 181 VAEEGRRIDGEAVQG--------------SEGPKDARKENQNLEGTKGVEKVQLQDDAKE 240
            AEEG+++DGE  +               +EG +DA K ++NL+GTKG EKVQLQDDAKE
Sbjct: 198 PAEEGQQLDGEECENPAEIEWGSAEGNKETEGSEDATKGSRNLDGTKGEEKVQLQDDAKE 257

Query: 241 SI-------------------STCSRDKAAIPEET--TVEVQRNNQDKLN 251
           +I                   +T   DKAAI +ET  +VEVQ N  ++ N
Sbjct: 258 TIESEDKESILGEKEFENAKQATSPGDKAAICKETMVSVEVQVNEPNEFN 302

[Close]

BLAST of Lsi06G009820 vs. ExPASy TrEMBL
Match: A0A7N2L1T6 (MBD domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 4.9e-47
Identity = 132/278 (47.48%), Postives = 172/278 (61.87%), Query Frame = 0


Query: 1   MASTLEEQGSKEDVLFLELPAPPGWNKKFLPKLDGITKKNEIIFIAPTGEEIHSKRQLDQ 60
           MAS++EE G +E+V+ +ELPAPPGW KKFLPK  G  KKNEIIF +PTGEEI SKRQL+Q
Sbjct: 1   MASSVEEAG-REEVVSVELPAPPGWKKKFLPKQSGTPKKNEIIFTSPTGEEIVSKRQLEQ 60

Query: 61  YLKSHPGNPASSEFDWGTGETPRRSARISEKAKAAPPSSQIERPKKRTRKQALSKKDDDK 120
           YLK+HPG P +SEFDWGTGETPRRSARISEK KA PP  + E PKKR+RK   S K DDK
Sbjct: 61  YLKAHPGGPTASEFDWGTGETPRRSARISEKTKATPP-PESETPKKRSRKS--SAKKDDK 120

Query: 121 EEDVVPYGFEEA-GVHKED-----ETNVDGKVKEIYVEGNDENRKPEDENVKAETVPAS- 180
           E++  P G EE   VH ED     + NVD K +++ V+ N E+ K +D + K E +P   
Sbjct: 121 EKETAPEGTEETKEVHMEDAEKSEKDNVDAKTEKVDVKQNQEDNKAQDTDTKTEAIPPEE 180

Query: 181 ---------AEVAEEGRRIDGEAVQGS---------EGPKDARKENQNLEGTKGVEKVQL 240
                       AEE ++     ++ S         EG K  + EN+ LEG K  EK Q 
Sbjct: 181 GKVGLEGNIPNDAEESKKTSEAELESSKETLVGKEAEGSKVTQNENEKLEGEKVQEKAQQ 240

Query: 241 QD-DAKESISTCSRDK--AAIPEETTVEVQRNNQDKLN 251
            + +A++   +  +DK  AAI  E  +EV+   +++ N
Sbjct: 241 PECEAEKEDGSGDQDKADAAIAGEKKIEVEGEEKERDN 274

[Close]

BLAST of Lsi06G009820 vs. ExPASy TrEMBL
Match: A0A498KC31 (MBD domain-containing protein OS=Malus domestica OX=3750 GN=DVH24_017771 PE=4 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 5.6e-43
Identity = 122/273 (44.69%), Postives = 167/273 (61.17%), Query Frame = 0


Query: 1   MASTLEEQGSKEDVLFLELPAPPGWNKKFLPKLDGITKKNEIIFIAPTGEEIHSKRQLDQ 60
           MAS++E++G KE+V+ LELPAP GW KKFLPK  G  KKNEI+F APTGEEI SKRQL+Q
Sbjct: 36  MASSVEKEGGKEEVVSLELPAPSGWVKKFLPKQSGTPKKNEIVFTAPTGEEITSKRQLEQ 95

Query: 61  YLKSHPGNPASSEFDWGTGETPRRSARISEKAKAAPPSSQIERPKKRTRKQALSKKDDDK 120
           YLK+HPG P +SEFDWGTGETPRRSARISEKAKA PP  + E PKKR+RK   +KK +DK
Sbjct: 96  YLKAHPGGPVASEFDWGTGETPRRSARISEKAKATPPPIESEPPKKRSRKSTSAKK-EDK 155

Query: 121 EEDVVPYGFEEAGVH-----KEDETNVDGKVKEIYVEGNDENRK----PEDENVKAE-TV 180
           E++  P G EE  +      ++ E + D +++++ V+ N +  K    PE   V+ E  V
Sbjct: 156 EKEAAPEGAEETKISDVQDAEKAEKDADTEMEKVDVKENQDEEKAPAPPEQAKVQQEVNV 215

Query: 181 PASAEVAEEGR-RIDGEAVQG------SEGPKDARKENQNLEGTKGVEKVQLQDDAKESI 240
           P  A    + +  +DG+ V+G       + P +A K  + + G +G   + + DD K   
Sbjct: 216 PGDAAAPGDSKASVDGKEVEGKKEEMVEQPPVEAGK--KEVAGDQGKPSIAIADDDKHEG 275

Query: 241 STCSRDKAAIPEETTVEVQRNNQDKLNTIGSSD 257
                +K    +ET VE    N +K    G+ +
Sbjct: 276 E--GEEKKKHGKETEVE----NMEKATAKGNGE 299

[Close]

BLAST of Lsi06G009820 vs. NCBI nr
Match: XP_038880161.1 (methyl-CpG-binding domain-containing protein 11-like isoform X2 [Benincasa hispida])

HSP 1 Score: 406.8 bits (1044), Expect = 1.4e-109
Identity = 216/257 (84.05%), Postives = 231/257 (89.88%), Query Frame = 0


Query: 1   MASTLEEQGSKEDVLFLELPAPPGWNKKFLPKLDGITKKNEIIFIAPTGEEIHSKRQLDQ 60
           MAST E+QGSKEDVLF+ELPAPPGWNKKFLPKLDGITKKNEIIFIAPTGEEIHSKRQLDQ
Sbjct: 1   MASTWEKQGSKEDVLFVELPAPPGWNKKFLPKLDGITKKNEIIFIAPTGEEIHSKRQLDQ 60

Query: 61  YLKSHPGNPASSEFDWGTGETPRRSARISEKAKAAPPSSQIERPKKRTRKQALSKKDDDK 120
           YLKSHPGNPASSEFDWGTGETPRRSARISEKAKAAPPS QIERPKKRTRKQ LS+KDD+K
Sbjct: 61  YLKSHPGNPASSEFDWGTGETPRRSARISEKAKAAPPSPQIERPKKRTRKQPLSRKDDNK 120

Query: 121 EEDVVPYGFEEAGVHKEDETNVDGKVKEIYVEGNDENRKPEDENVKAETVPASAEVAEEG 180
           E DVVP GFEE GVHKE+ET VDGKVK+IYVEGNDEN K ++ENVK ET+P   EVAEEG
Sbjct: 121 EADVVPDGFEEKGVHKENETEVDGKVKKIYVEGNDENSKLKEENVKDETIPTPIEVAEEG 180

Query: 181 RRIDG-------EAVQGSEGPKDARKENQNLEGTKGVEKVQLQDDAKESISTCSRDKAAI 240
           R IDG       E  Q SEG ++ARKENQ+LEGTKG E+VQLQDDAKESISTCS+DKAAI
Sbjct: 181 RGIDGDECEKLAETEQASEGSENARKENQSLEGTKGEEEVQLQDDAKESISTCSKDKAAI 240

Query: 241 PEETTVEVQRNNQDKLN 251
           PEETTVEVQRNNQD+LN
Sbjct: 241 PEETTVEVQRNNQDQLN 257

[Close]

BLAST of Lsi06G009820 vs. NCBI nr
Match: XP_038880160.1 (methyl-CpG-binding domain-containing protein 11-like isoform X1 [Benincasa hispida])

HSP 1 Score: 406.8 bits (1044), Expect = 1.4e-109
Identity = 216/257 (84.05%), Postives = 231/257 (89.88%), Query Frame = 0


Query: 1   MASTLEEQGSKEDVLFLELPAPPGWNKKFLPKLDGITKKNEIIFIAPTGEEIHSKRQLDQ 60
           MAST E+QGSKEDVLF+ELPAPPGWNKKFLPKLDGITKKNEIIFIAPTGEEIHSKRQLDQ
Sbjct: 37  MASTWEKQGSKEDVLFVELPAPPGWNKKFLPKLDGITKKNEIIFIAPTGEEIHSKRQLDQ 96

Query: 61  YLKSHPGNPASSEFDWGTGETPRRSARISEKAKAAPPSSQIERPKKRTRKQALSKKDDDK 120
           YLKSHPGNPASSEFDWGTGETPRRSARISEKAKAAPPS QIERPKKRTRKQ LS+KDD+K
Sbjct: 97  YLKSHPGNPASSEFDWGTGETPRRSARISEKAKAAPPSPQIERPKKRTRKQPLSRKDDNK 156

Query: 121 EEDVVPYGFEEAGVHKEDETNVDGKVKEIYVEGNDENRKPEDENVKAETVPASAEVAEEG 180
           E DVVP GFEE GVHKE+ET VDGKVK+IYVEGNDEN K ++ENVK ET+P   EVAEEG
Sbjct: 157 EADVVPDGFEEKGVHKENETEVDGKVKKIYVEGNDENSKLKEENVKDETIPTPIEVAEEG 216

Query: 181 RRIDG-------EAVQGSEGPKDARKENQNLEGTKGVEKVQLQDDAKESISTCSRDKAAI 240
           R IDG       E  Q SEG ++ARKENQ+LEGTKG E+VQLQDDAKESISTCS+DKAAI
Sbjct: 217 RGIDGDECEKLAETEQASEGSENARKENQSLEGTKGEEEVQLQDDAKESISTCSKDKAAI 276

Query: 241 PEETTVEVQRNNQDKLN 251
           PEETTVEVQRNNQD+LN
Sbjct: 277 PEETTVEVQRNNQDQLN 293

[Close]

BLAST of Lsi06G009820 vs. NCBI nr
Match: XP_004150031.1 (methyl-CpG-binding domain-containing protein 11 [Cucumis sativus] >KAE8653112.1 hypothetical protein Csa_019891 [Cucumis sativus])

HSP 1 Score: 353.6 bits (906), Expect = 1.4e-93
Identity = 198/257 (77.04%), Postives = 210/257 (81.71%), Query Frame = 0


Query: 1   MASTLEEQGSKEDVLFLELPAPPGWNKKFLPKLDGITKKNEIIFIAPTGEEIHSKRQLDQ 60
           MASTLE+QGSKE +LFLELPAPPGWNKKFLPKLDGITKKNEIIFIAPTGE IH+KRQLDQ
Sbjct: 1   MASTLEKQGSKEGILFLELPAPPGWNKKFLPKLDGITKKNEIIFIAPTGEAIHNKRQLDQ 60

Query: 61  YLKSHPGNPASSEFDWGTGETPRRSARISEKAKAAPPSSQIERPKKRTRKQALSKKDDDK 120
           YLKSHPGNPASSEFDW TGETPRRSARISEKAKA PPS QIER KKRTRKQALSKK + K
Sbjct: 61  YLKSHPGNPASSEFDWRTGETPRRSARISEKAKATPPSPQIERRKKRTRKQALSKKVEVK 120

Query: 121 EEDVVPYGFEEAGVHKEDETNVDGKVKEIYVEGNDENRKPEDENVKAETVPASAEVAEEG 180
           E  VVPYG EE GVHKEDETNVD +VKEI+ E   ENRK EDEN KAET P  AE+AEEG
Sbjct: 121 ETVVVPYGLEEVGVHKEDETNVDSEVKEIHEEEKYENRKLEDENGKAETTPTPAEMAEEG 180

Query: 181 RRIDGE-------AVQGSEGPKDARKENQNLEGTKGVEKVQLQDDAKESISTCSRDKAAI 240
            RIDG+         QGSEG +DARKENQNLEGT G EKVQLQ+DAKESIS         
Sbjct: 181 WRIDGDEWEKLAKTKQGSEGSEDARKENQNLEGTNGEEKVQLQNDAKESIS--------- 240

Query: 241 PEETTVEVQRNNQDKLN 251
            EE T EVQRNNQD+L+
Sbjct: 241 -EEITAEVQRNNQDELS 247

[Close]

BLAST of Lsi06G009820 vs. NCBI nr
Match: XP_008443980.1 (PREDICTED: methyl-CpG-binding domain-containing protein 11-like [Cucumis melo] >XP_008443981.1 PREDICTED: methyl-CpG-binding domain-containing protein 11-like [Cucumis melo] >KAA0050154.1 methyl-CpG-binding domain-containing protein 11-like [Cucumis melo var. makuwa] >TYK06410.1 methyl-CpG-binding domain-containing protein 11-like [Cucumis melo var. makuwa])

HSP 1 Score: 327.8 bits (839), Expect = 8.5e-86
Identity = 177/216 (81.94%), Postives = 186/216 (86.11%), Query Frame = 0


Query: 1   MASTLEEQGSKEDVLFLELPAPPGWNKKFLPKLDGITKKNEIIFIAPTGEEIHSKRQLDQ 60
           MASTLE+QGSKEDVLFLELPAPPGWNKKFLPKLDGITKKNEIIFIAPTGEEIH+KRQLDQ
Sbjct: 1   MASTLEKQGSKEDVLFLELPAPPGWNKKFLPKLDGITKKNEIIFIAPTGEEIHNKRQLDQ 60

Query: 61  YLKSHPGNPASSEFDWGTGETPRRSARISEKAKAAPPSSQIERPKKRTRKQALSKKDDDK 120
           YLKSHPGN ASSEFDWGTGETPRRSARISEKAKA PPS  IERPKKRTRKQAL KK +DK
Sbjct: 61  YLKSHPGNLASSEFDWGTGETPRRSARISEKAKATPPSPHIERPKKRTRKQALLKKFEDK 120

Query: 121 EEDVVPYGFEEAGVHKEDETNVDGKVKEIYVEGNDENRKPEDENVKAETVPASAEVAEEG 180
           E  VVP GFEEAGVHKEDETNVD +VKEI VEG  ENRK EDE +KAET P  AE+AEEG
Sbjct: 121 ETVVVPDGFEEAGVHKEDETNVDSEVKEIQVEGKYENRKLEDEKLKAETTPTPAEMAEEG 180

Query: 181 RRID-------GEAVQGSEGPKDARKENQNLEGTKG 210
           R+ D        +  QGSEG +DARKENQNLEGTKG
Sbjct: 181 RQSDDDECKKLAKTKQGSEGSEDARKENQNLEGTKG 216

[Close]

BLAST of Lsi06G009820 vs. NCBI nr
Match: XP_022144823.1 (methyl-CpG-binding domain-containing protein 11-like [Momordica charantia])

HSP 1 Score: 256.1 bits (653), Expect = 3.1e-64
Identity = 167/290 (57.59%), Postives = 199/290 (68.62%), Query Frame = 0


Query: 1   MASTLEEQGSKEDVLFLELPAPPGWNKKFLPKLDGITKKNEIIFIAPTGEEIHSKRQLDQ 60
           MAST++E GS ED+LFLELPAPPGW KKFLPKLDGITKK EIIF+APTGEEI+ KRQL Q
Sbjct: 18  MASTVKE-GSNEDLLFLELPAPPGWKKKFLPKLDGITKKKEIIFLAPTGEEINGKRQLHQ 77

Query: 61  YLKSHPGNPASSEFDWGTGETPRRSARISEKAKAAPPSSQIERPKKRTRKQALSKKDDDK 120
           YLKSHPGNPASSEFDWGTGETPR+SARISE+ KAA P  +IE PKKRTRK A+SKK DDK
Sbjct: 78  YLKSHPGNPASSEFDWGTGETPRKSARISERVKAA-PLPRIEWPKKRTRKLAVSKK-DDK 137

Query: 121 EEDVVPYGFEEA-GVHKEDETNVDGKVKEIYVEGNDENRKPEDENVKAETVP----ASAE 180
           E DVV  G EEA  VHK+D    +  V +   +GN ENR  +DE+V+    P    AS+E
Sbjct: 138 EADVVLDGSEEARAVHKQDADKYESGVTD--GKGNQENRTLQDEDVETAPAPAPVLASSE 197

Query: 181 VAEEGRRIDGEAVQG--------------SEGPKDARKENQNLEGTKGVEKVQLQDDAKE 240
            AEEG+++DGE  +               +EG +DA K ++NL+GTKG EKVQLQDDAKE
Sbjct: 198 PAEEGQQLDGEECENPAEIEWGSAEGNKETEGSEDATKGSRNLDGTKGEEKVQLQDDAKE 257

Query: 241 SI-------------------STCSRDKAAIPEET--TVEVQRNNQDKLN 251
           +I                   +T   DKAAI +ET  +VEVQ N  ++ N
Sbjct: 258 TIESEDKESILGEKEFENAKQATSPGDKAAICKETMVSVEVQVNEPNEFN 302

[Close]

BLAST of Lsi06G009820 vs. TAIR 10
Match: AT3G15790.1 (methyl-CPG-binding domain 11 )

HSP 1 Score: 135.6 bits (340), Expect = 5.8e-32
Identity = 102/250 (40.80%), Postives = 138/250 (55.20%), Query Frame = 0


Query: 9   GSKEDVLFLELPAPPGWNKKFLPKLDGITKKNEIIFIAPTGEEIHSKRQLDQYLKSHPGN 68
           G +E+V+ +ELPAP  W K F P   G  KK E++F+APTGEEI +++QL+QYLKSHPGN
Sbjct: 2   GGEEEVVSVELPAPSSWKKLFYPNKVGSVKKTEVVFVAPTGEEISNRKQLEQYLKSHPGN 61

Query: 69  PASSEFDWGTGETPRRSARISEKAKAAPPSSQIERPKKRTR-KQALSKKDDDKEEDVVPY 128
           PA +EFDW T  TPRRSARISEK KA  PS   E PKKR R K  +SKKD + E+     
Sbjct: 62  PAIAEFDWTTSGTPRRSARISEKTKAT-PSPDKEPPKKRGRTKSPVSKKDAEGEKS--EG 121

Query: 129 GFEEAGVHKEDETNVDGKVKE----IYVEGNDENRKPED--ENVKAETVPASAEVAEEGR 188
           G EE    K+ E N    + E        G+ E  +  D  EN+ AE  P +A V EEG 
Sbjct: 122 GGEENSHVKDTEMNPPEGIAENENVTDKNGSGETERVNDAKENIVAEETPNAAPVQEEGE 181

Query: 189 RIDGEAVQGSEGPKDARKENQNLEGTKGVEKVQLQDDAKESISTCSRDKAAIPEETTVEV 248
            +  +A+   +   D  KE    + T  +EK  + D  K+++      K      +  E 
Sbjct: 182 SMKEKALDSVD---DKSKETDKEKDTGSIEKNSV-DVEKKTVEASDEKK-----NSEAET 239

Query: 249 QRNNQDKLNT 252
           + + ++ L T
Sbjct: 242 RNHEENGLTT 239

[Close]

BLAST of Lsi06G009820 vs. TAIR 10
Match: AT1G15340.1 (methyl-CPG-binding domain 10 )

HSP 1 Score: 131.3 bits (329), Expect = 1.1e-30
Identity = 94/238 (39.50%), Postives = 136/238 (57.14%), Query Frame = 0


Query: 12  EDVLFLELPAPPGWNKKFLPKLDGITKKNEIIFIAPTGEEIHSKRQLDQYLKSHPGNPAS 71
           ++++ +ELPAP  W K F PK  G  +K EI+F+APTGEEI S++QL+QYLK+HPGNP  
Sbjct: 5   DELVSIELPAPASWKKLFYPKRAGTPRKTEIVFVAPTGEEISSRKQLEQYLKAHPGNPVI 64

Query: 72  SEFDWGTGETPRRSARISEKAKAAPPSSQIERPKKRTRKQALSKKDDDKEEDVVPYGFEE 131
           SEF+W TGETPRRS+RIS+K KA  P+   E P  + R+ +L+KKD+ +  +      EE
Sbjct: 65  SEFEWTTGETPRRSSRISQKVKATTPTPDKE-PLLKKRRSSLTKKDNKEAAE----KNEE 124

Query: 132 AGVHKEDETNVDGKV------KEIYVEGNDENRKPEDENVKAETVPASAEVAEEGRRIDG 191
           A V +  + + DGK       KE   EG  E  + E EN + E   A  +V +EG + + 
Sbjct: 125 AAVKENMDVDKDGKTENAEAEKEKEKEGVTEIAEAEKENNEGEKTEAE-KVNKEGEKTEA 184

Query: 192 EAVQGSEGPKDARKENQNLEGTKGVEKVQLQDDAKESISTCSRDKAAIPEETTVEVQR 244
               G EG  +  +  +  EG    EK + ++   E +    RDK    E  T E+++
Sbjct: 185 ----GKEGQTEIAEAEKEKEG----EKAEAENKEAEVV----RDKKESMEVDTSELEK 224

[Close]

BLAST of Lsi06G009820 vs. TAIR 10
Match: AT1G15340.2 (methyl-CPG-binding domain 10 )

HSP 1 Score: 72.0 bits (175), Expect = 7.8e-13
Identity = 70/254 (27.56%), Postives = 122/254 (48.03%), Query Frame = 0


Query: 12  EDVLFLELPAPPGWNKKFLPKLDGITKKNEIIFIAPTGEEIHSKRQLDQYLKSHPGNPAS 71
           ++++ +ELPAP  W K F PK  G  +K EI+F+APTGEEI S++QL+QYLK +      
Sbjct: 5   DELVSIELPAPASWKKLFYPKRAGTPRKTEIVFVAPTGEEISSRKQLEQYLKDNKEAAEK 64

Query: 72  SEFDWGTGETPRRSARISEKAKAAPPSSQIERPKKRTRKQALSKKDDDKEEDVVPYGFEE 131
           +E         + +  + +  K     ++ E+ K+   + A ++K++++ E       E 
Sbjct: 65  NE-----EAAVKENMDVDKDGKTENAEAEKEKEKEGVTEIAEAEKENNEGEKT-----EA 124

Query: 132 AGVHKEDETNVDGKVKEIYV---EGNDENRKPEDENVKAETVPASAEVAEEGRRIDGEAV 191
             V+KE E    GK  +  +   E   E  K E EN +AE V    E  E    +D   +
Sbjct: 125 EKVNKEGEKTEAGKEGQTEIAEAEKEKEGEKAEAENKEAEVVRDKKESME----VDTSEL 184

Query: 192 QGSEGPKDARKENQNLEGTKGVEKVQLQDDAKESISTCSRDKAAIPEET----TVEVQRN 251
           +   G  +  +E   +EG K  E      +A+E ++    +K    E+T    +V  + N
Sbjct: 185 EKKAGSGEGAEEPSKVEGLKDTE----MKEAQEVVTEADVEKKPAEEKTENKGSVTTEAN 239

Query: 252 NQDKLNTIGSSDVN 259
            +  + T+G  +++
Sbjct: 245 GEQNV-TLGEPNLD 239

The following BLAST results are available for this feature:

BLAST of Lsi06G009820 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LW00	8.1e-31	40.80	Methyl-CpG-binding domain-containing protein 11 OS=Arabidopsis thaliana OX=3702 ...	[more]
Q9XI36	1.5e-29	39.50	Methyl-CpG-binding domain-containing protein 10 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of Lsi06G009820 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3B9A2	4.1e-86	81.94	methyl-CpG-binding domain-containing protein 11-like OS=Cucumis melo OX=3656 GN=...	[more]
A0A5A7U4J5	4.1e-86	81.94	Methyl-CpG-binding domain-containing protein 11-like OS=Cucumis melo var. makuwa...	[more]
A0A6J1CUB2	1.5e-64	57.59	methyl-CpG-binding domain-containing protein 11-like OS=Momordica charantia OX=3...	[more]
A0A7N2L1T6	4.9e-47	47.48	MBD domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]
A0A498KC31	5.6e-43	44.69	MBD domain-containing protein OS=Malus domestica OX=3750 GN=DVH24_017771 PE=4 SV...	[more]

BLAST of Lsi06G009820 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038880161.1	1.4e-109	84.05	methyl-CpG-binding domain-containing protein 11-like isoform X2 [Benincasa hispi...	[more]
XP_038880160.1	1.4e-109	84.05	methyl-CpG-binding domain-containing protein 11-like isoform X1 [Benincasa hispi...	[more]
XP_004150031.1	1.4e-93	77.04	methyl-CpG-binding domain-containing protein 11 [Cucumis sativus] >KAE8653112.1 ...	[more]
XP_008443980.1	8.5e-86	81.94	PREDICTED: methyl-CpG-binding domain-containing protein 11-like [Cucumis melo] >...	[more]
XP_022144823.1	3.1e-64	57.59	methyl-CpG-binding domain-containing protein 11-like [Momordica charantia]	[more]

BLAST of Lsi06G009820 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G15790.1	5.8e-32	40.80	methyl-CPG-binding domain 11	[more]
AT1G15340.1	1.1e-30	39.50	methyl-CPG-binding domain 10	[more]
AT1G15340.2	7.8e-13	27.56	methyl-CPG-binding domain 10	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001739	Methyl-CpG DNA binding	PFAM	PF01429	MBD	coord: 18..80 e-value: 2.2E-10 score: 40.1
IPR001739	Methyl-CpG DNA binding	PROSITE	PS50982	MBD	coord: 11..81 score: 13.210166
None	No IPR available	GENE3D	3.30.890.10		coord: 3..126 e-value: 4.7E-12 score: 48.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 56..258
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 100..168
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 238..258
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 175..225
None	No IPR available	PANTHER	PTHR33729:SF6	METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 11-LIKE	coord: 1..243
IPR039622	Methyl-CpG-binding domain-containing protein 10/11	PANTHER	PTHR33729	METHYL-CPG BINDING DOMAIN CONTAINING PROTEIN, EXPRESSED	coord: 1..243
IPR016177	DNA-binding domain superfamily	SUPERFAMILY	54171	DNA-binding domain	coord: 12..110

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi06G009820.1	Lsi06G009820.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding