Lsi06G009730 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi06G009730
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Ribosomal protein
Location	chr06: 19714657 .. 19716675 (+)
RNA-Seq Expression	Lsi06G009730
Synteny	Lsi06G009730

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AACGAAATTCCATACCGTGTTCAAACGTTCATCTCAGCTGCTGGCCGTCGCTCTCGATTCCAAGGTATTACGCTAAGAAATCATTCATCTTCTCAGTTAAGCTTTGCCTCAACACTAGTTACTGCAGCATCCCCTTCATGTTTCTTGTTAAATTTTGCTGTCAATTCACTTTAGGGTTTTAGGGTTTTGTATCGATTTCTGTTTTAGCATTTTTCAGTATCAGAGACAACCTTGCGATCATGATCTAATTTATGTAAATCACTTTGGAAATTTCAACTTTAACTGCTGTTGTACTTCTATTTCCGTGGCTACTCATTCTAGAATTTTTACGTTCTGTTCTCTTTTCAGTTTCTTTATGCATTAGTTATTGTTTCGATTAATCTTCTTTGAGTTTTTTTTTTTTAGTTTGAATGATTGAGGAAGAATTCATTATTGGGTTAATCAAGTAAAAGTTTAGTGTTCTTAAGCATAACACGGAATTTTGATAACGGGATTGTTGGGAGGAGTTCATTGGTTCCCTGCTAAATCTCTACATGAATTTGACCATTTTTTACTGGCATTTTCAGTGTGTCCTTACTATTTTCCTTCATTTCAGTGATGGAATTGGAATTGACGGTATTAAGATATGATAATTTTACATTCACATTGGATTGCTACTTGATTTCTTTGTTTCTTGTTTGTTTGTTCTTCCTCCAGCCATGAAAGTCCGTGCTTCAGTGAAAAAGATGTGCGAGTTTTGTAGGACAGTTAAGCGTCGAGGCCGAGTATATATATACTGTTCATCCAATCCCAAACACAAGCAACGCCAAGGCCTATCTACATTTGCAAGTGAAGGTCCTTCTCCTTCCTTGTGAGTACTTAACTCTCCTTTGATTTGGGCATCGTCAGTTATTAGTCTTTGAATGCATACTTTATCCGTATAAGTAATCTTTTTAGATGGAAAACTCTGAAAAATTATGCCTTTTGCTACTGAAGAGAGTTGTCGTAGAATTCAGGCCAAGGACTCCCAACTTATTTAAGGGGAATTGTATGAATGTAGTTTGAGATTATGTAAAACAAAAAAGGACAGAACTGTTATATGTGAAATTGTAGAACTTTTGTGAATATGCTGAAGGCTTGATTCCCGGTAATTGGTTCTTCAAATTTGTCACTTATAAGTCTTCTTCAAGTTCCATCCTCTACAATGCAGCTAGAGTTCGTTTTTGGAATTGTTGGAAGTCGTTGTTTCGTTATCATGAATAATATGCTCAGTACTCTTCTTGTTCACATAGCCATATATGGTATGCAGGTTTATACTTAGGATTAATCTCATGATTCTTGTAGCTGAATGCATTAAACGTGGCCCATTTTTCAGGTTCTCAAGAAATGAGGTGAAGCAAGAGGTTCTTCCCAGTCATAGCTCGGGAAGGGGGCTGGCTTCTCTCATCCCCCAAAAGCAAGAGCCAACAATGTTGCCTGGTTGGAGAATGGGTCTGGCTTCAATCCTGTTGAAGAAACACAGTTAGCTTAGTAAACAAAAGGAAATCGATATCTGAGTGCCATGGCAATCCTACCAATATAGATTATTACTTATTGGTTCGTCTTTGACTTTCATTTGCAATATCCGTATTTACAACAAGGATTCTGCTTCTAAAAAGAAATAAGCACTGCTACTCTGAGTTTTGTTCTGTTTGAGTTGGTTTTGATACGTAGAATTGGAGGAAGAGAAGGTGTTACATTGGATATCGTAATTGTGTTAATTGTTTGGTTATTGTTTTATTCCTTTCTACACTCCAATCTTTGTCAATTGTCATTTTCATTTTCAGCTCCAGACCAGAGAGTCAGTGATCTGCTAGCCATCTGCTATGTTGTGATTTTCAATCCTTAATTTTCCTCTATATAATTCTTACATCTTCCAATATATAATTAATTAAGTTGTATGCTAAAACGAGCATAGTTATGTACTATATTATCTCAACCTTGAAGTTAGAGGCTCAATTTTTCTATTCACATATTGTCAAATAAAAGTTTAAATTATAT

mRNA sequence

AACGAAATTCCATACCGTGTTCAAACGTTCATCTCAGCTGCTGGCCGTCGCTCTCGATTCCAAGGTATTACGCTAAGAAATCATTCATCTTCTCAGTTAAGCTTTGCCTCAACACTATATCAGAGACAACCTTGCGATCATGATCTAATTTATTGTGTCCTTACTATTTTCCTTCATTTCAGTGATGGAATTGGAATTGACGCCATGAAAGTCCGTGCTTCAGTGAAAAAGATGTGCGAGTTTTGTAGGACAGTTAAGCGTCGAGGCCGAGTATATATATACTGTTCATCCAATCCCAAACACAAGCAACGCCAAGGCCTATCTACATTTGCAAGTGAAGGTCCTTCTCCTTCCTTGTTCTCAAGAAATGAGGTGAAGCAAGAGGTTCTTCCCAGTCATAGCTCGGGAAGGGGGCTGGCTTCTCTCATCCCCCAAAAGCAAGAGCCAACAATGTTGCCTGGTTGGAGAATGGGTCTGGCTTCAATCCTGTTGAAGAAACACAGTTAGCTTAGTAAACAAAAGGAAATCGATATCTGAGTGCCATGGCAATCCTACCAATATAGATTATTACTTATTGGTTCGTCTTTGACTTTCATTTGCAATATCCGTATTTACAACAAGGATTCTGCTTCTAAAAAGAAATAAGCACTGCTACTCTGAGTTTTGTTCTGTTTGAGTTGGTTTTGATACGTAGAATTGGAGGAAGAGAAGGTGTTACATTGGATATCGTAATTGTGTTAATTGTTTGGTTATTGTTTTATTCCTTTCTACACTCCAATCTTTGTCAATTGTCATTTTCATTTTCAGCTCCAGACCAGAGAGTCAGTGATCTGCTAGCCATCTGCTATGTTGTGATTTTCAATCCTTAATTTTCCTCTATATAATTCTTACATCTTCCAATATATAATTAATTAAGTTGTATGCTAAAACGAGCATAGTTATGTACTATATTATCTCAACCTTGAAGTTAGAGGCTCAATTTTTCTATTCACATATTGTCAAATAAAAGTTTAAATTATAT

Coding sequence (CDS)

AACGAAATTCCATACCGTGTTCAAACGTTCATCTCAGCTGCTGGCCGTCGCTCTCGATTCCAAGGTATTACGCTAAGAAATCATTCATCTTCTCAGTTAAGCTTTGCCTCAACACTATATCAGAGACAACCTTGCGATCATGATCTAATTTATTGTGTCCTTACTATTTTCCTTCATTTCAGTGATGGAATTGGAATTGACGCCATGAAAGTCCGTGCTTCAGTGAAAAAGATGTGCGAGTTTTGTAGGACAGTTAAGCGTCGAGGCCGAGTATATATATACTGTTCATCCAATCCCAAACACAAGCAACGCCAAGGCCTATCTACATTTGCAAGTGAAGGTCCTTCTCCTTCCTTGTTCTCAAGAAATGAGGTGAAGCAAGAGGTTCTTCCCAGTCATAGCTCGGGAAGGGGGCTGGCTTCTCTCATCCCCCAAAAGCAAGAGCCAACAATGTTGCCTGGTTGGAGAATGGGTCTGGCTTCAATCCTGTTGAAGAAACACAGTTAG

Protein sequence

NEIPYRVQTFISAAGRRSRFQGITLRNHSSSQLSFASTLYQRQPCDHDLIYCVLTIFLHFSDGIGIDAMKVRASVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQGLSTFASEGPSPSLFSRNEVKQEVLPSHSSGRGLASLIPQKQEPTMLPGWRMGLASILLKKHS

Homology

[Close]

BLAST of Lsi06G009730 vs. ExPASy Swiss-Prot
Match: P73300 (50S ribosomal protein L36 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=rpmJ PE=3 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.8e-10
Identity = 29/38 (76.32%), Postives = 34/38 (89.47%), Query Frame = 0


Query: 69  MKVRASVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQG 107
           MKVRASVKKMC+ CR ++RRGRV + CS+NPKHKQRQG
Sbjct: 1   MKVRASVKKMCDKCRVIRRRGRVMVICSANPKHKQRQG 38

[Close]

BLAST of Lsi06G009730 vs. ExPASy Swiss-Prot
Match: B3WAJ5 (50S ribosomal protein L36 OS=Lactobacillus casei (strain BL23) OX=543734 GN=rpmJ PE=3 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 5.1e-10
Identity = 29/38 (76.32%), Postives = 33/38 (86.84%), Query Frame = 0


Query: 69  MKVRASVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQG 107
           MKVR SVKKMCE C+ V+R+GRV I CS+NPKHKQRQG
Sbjct: 1   MKVRPSVKKMCEHCKVVRRKGRVMIICSANPKHKQRQG 38

[Close]

BLAST of Lsi06G009730 vs. ExPASy Swiss-Prot
Match: Q035A6 (50S ribosomal protein L36 OS=Lactobacillus paracasei (strain ATCC 334 / BCRC 17002 / CIP 107868 / KCTC 3260 / NRRL B-441) OX=321967 GN=rpmJ PE=3 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 5.1e-10
Identity = 29/38 (76.32%), Postives = 33/38 (86.84%), Query Frame = 0


Query: 69  MKVRASVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQG 107
           MKVR SVKKMCE C+ V+R+GRV I CS+NPKHKQRQG
Sbjct: 1   MKVRPSVKKMCEHCKVVRRKGRVMIICSANPKHKQRQG 38

[Close]

BLAST of Lsi06G009730 vs. ExPASy Swiss-Prot
Match: A5VLI2 (50S ribosomal protein L36 OS=Lactobacillus reuteri (strain DSM 20016) OX=557436 GN=rpmJ PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 6.7e-10
Identity = 29/38 (76.32%), Postives = 32/38 (84.21%), Query Frame = 0


Query: 69  MKVRASVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQG 107
           MKVR SVKKMCE C+ VKR GRV + CS+NPKHKQRQG
Sbjct: 1   MKVRPSVKKMCEHCKIVKRNGRVMVICSANPKHKQRQG 38

[Close]

BLAST of Lsi06G009730 vs. ExPASy Swiss-Prot
Match: B2G8V5 (50S ribosomal protein L36 OS=Lactobacillus reuteri (strain JCM 1112) OX=557433 GN=rpmJ PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 6.7e-10
Identity = 29/38 (76.32%), Postives = 32/38 (84.21%), Query Frame = 0


Query: 69  MKVRASVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQG 107
           MKVR SVKKMCE C+ VKR GRV + CS+NPKHKQRQG
Sbjct: 1   MKVRPSVKKMCEHCKIVKRNGRVMVICSANPKHKQRQG 38

[Close]

BLAST of Lsi06G009730 vs. ExPASy TrEMBL
Match: A0A1S3B8W2 (Ribosomal protein OS=Cucumis melo OX=3656 GN=LOC103487446 PE=3 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 6.9e-42
Identity = 88/100 (88.00%), Postives = 92/100 (92.00%), Query Frame = 0


Query: 69  MKVRASVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQGLSTFASEGPSPSLFSRNEVKQE 128
           MKVR+SVKKMCEFCRTVKR+GRVYIYCSSNPKHKQRQGLSTFA EGPSPSLFSR EVKQE
Sbjct: 1   MKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQGLSTFACEGPSPSLFSRTEVKQE 60

Query: 129 VLPSHSSGRGLASLIPQKQEPTMLPGWRMGLASILLKKHS 169
           +LPS  S  GLASLIPQK EPTML GWRMGLASILLKKH+
Sbjct: 61  ILPSQGSRMGLASLIPQKNEPTMLLGWRMGLASILLKKHN 100

[Close]

BLAST of Lsi06G009730 vs. ExPASy TrEMBL
Match: A0A5A7U4L3 (Ribosomal protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold163G001300 PE=3 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 6.9e-42
Identity = 88/100 (88.00%), Postives = 92/100 (92.00%), Query Frame = 0


Query: 69  MKVRASVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQGLSTFASEGPSPSLFSRNEVKQE 128
           MKVR+SVKKMCEFCRTVKR+GRVYIYCSSNPKHKQRQGLSTFA EGPSPSLFSR EVKQE
Sbjct: 1   MKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQGLSTFACEGPSPSLFSRTEVKQE 60

Query: 129 VLPSHSSGRGLASLIPQKQEPTMLPGWRMGLASILLKKHS 169
           +LPS  S  GLASLIPQK EPTML GWRMGLASILLKKH+
Sbjct: 61  ILPSQGSRMGLASLIPQKNEPTMLLGWRMGLASILLKKHN 100

[Close]

BLAST of Lsi06G009730 vs. ExPASy TrEMBL
Match: A0A6J1EZS5 (Ribosomal protein OS=Cucurbita moschata OX=3662 GN=LOC111440855 PE=3 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 1.5e-41
Identity = 88/100 (88.00%), Postives = 93/100 (93.00%), Query Frame = 0


Query: 69  MKVRASVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQGLSTFASEGPSPSLFSRNEVKQE 128
           MKVRASVKKMCEFCRTV+RRGRVYIYCS+NPKHKQRQGLSTFASE PSPSLFSR+EVKQE
Sbjct: 1   MKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQGLSTFASEAPSPSLFSRSEVKQE 60

Query: 129 VLPSHSSGRGLASLIPQKQEPTMLPGWRMGLASILLKKHS 169
           +LPSHSS  GLASLIPQK EPTML GWRMGLASIL KK +
Sbjct: 61  ILPSHSSRTGLASLIPQKHEPTMLFGWRMGLASILWKKQN 100

[Close]

BLAST of Lsi06G009730 vs. ExPASy TrEMBL
Match: A0A6J1JBN8 (Ribosomal protein OS=Cucurbita maxima OX=3661 GN=LOC111485318 PE=3 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 2.0e-41
Identity = 87/100 (87.00%), Postives = 92/100 (92.00%), Query Frame = 0


Query: 69  MKVRASVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQGLSTFASEGPSPSLFSRNEVKQE 128
           MKVRASVKKMCEFCRTVKRRGRVY+YCSSNPKHKQRQGLST ASEGPSP LF  +EVKQE
Sbjct: 1   MKVRASVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLSTSASEGPSPHLFPSSEVKQE 60

Query: 129 VLPSHSSGRGLASLIPQKQEPTMLPGWRMGLASILLKKHS 169
           +LPSHSS  GLASL+PQK EPTML GWRMGLASILLKKH+
Sbjct: 61  ILPSHSSRTGLASLLPQKHEPTMLFGWRMGLASILLKKHN 100

[Close]

BLAST of Lsi06G009730 vs. ExPASy TrEMBL
Match: A0A6J1CT08 (Ribosomal protein OS=Momordica charantia OX=3673 GN=LOC111014487 PE=3 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 2.6e-41
Identity = 86/100 (86.00%), Postives = 93/100 (93.00%), Query Frame = 0


Query: 69  MKVRASVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQGLSTFASEGPSPSLFSRNEVKQE 128
           MKVR+SVKKMCEFCRTVKRRGRVY+YCSSNPKHKQRQGLSTFASEGPSP LFSR+EVKQE
Sbjct: 1   MKVRSSVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLSTFASEGPSPPLFSRSEVKQE 60

Query: 129 VLPSHSSGRGLASLIPQKQEPTMLPGWRMGLASILLKKHS 169
           +LPS+S   GLASLIPQK EPT + GWRMGLASILLKKH+
Sbjct: 61  ILPSYSPRTGLASLIPQKHEPTTMFGWRMGLASILLKKHN 100

[Close]

BLAST of Lsi06G009730 vs. NCBI nr
Match: XP_004150587.2 (uncharacterized protein LOC101223220 [Cucumis sativus] >KGN65627.2 hypothetical protein Csa_020116 [Cucumis sativus])

HSP 1 Score: 186.0 bits (471), Expect = 2.6e-43
Identity = 92/109 (84.40%), Postives = 98/109 (89.91%), Query Frame = 0


Query: 60  FSDGIGIDAMKVRASVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQGLSTFASEGPSPSL 119
           FS  + I+AMKVR+SVKKMCEFCRTVKR+GRVYIYCSSNPKHKQRQGLSTFASEGPSPSL
Sbjct: 35  FSLNLCINAMKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQGLSTFASEGPSPSL 94

Query: 120 FSRNEVKQEVLPSHSSGRGLASLIPQKQEPTMLPGWRMGLASILLKKHS 169
           FSR EVKQE+LPS S   GLASLIPQK EPTM  GWRMGLASILLKKH+
Sbjct: 95  FSRTEVKQEILPSQSLRTGLASLIPQKNEPTMFLGWRMGLASILLKKHN 143

[Close]

BLAST of Lsi06G009730 vs. NCBI nr
Match: XP_038879717.1 (uncharacterized protein LOC120071478 [Benincasa hispida])

HSP 1 Score: 183.3 bits (464), Expect = 1.7e-42
Identity = 90/100 (90.00%), Postives = 94/100 (94.00%), Query Frame = 0


Query: 69  MKVRASVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQGLSTFASEGPSPSLFSRNEVKQE 128
           MKVRASVKKMCEFCRTVKRRGRVY+YCSSNPKHKQRQGLSTFASEGP PSLFSR+EVKQE
Sbjct: 1   MKVRASVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLSTFASEGPPPSLFSRSEVKQE 60

Query: 129 VLPSHSSGRGLASLIPQKQEPTMLPGWRMGLASILLKKHS 169
           +LPSHSS  GLASLIPQK EPTML GWRMGLASILLKK +
Sbjct: 61  LLPSHSSRTGLASLIPQKHEPTMLLGWRMGLASILLKKRN 100

[Close]

BLAST of Lsi06G009730 vs. NCBI nr
Match: XP_008443993.2 (PREDICTED: uncharacterized protein LOC103487446 [Cucumis melo] >XP_008443994.2 PREDICTED: uncharacterized protein LOC103487446 [Cucumis melo] >XP_008443996.1 PREDICTED: uncharacterized protein LOC103487446 [Cucumis melo] >KAA0050174.1 50S ribosomal protein L36 [Cucumis melo var. makuwa] >TYK06427.1 50S ribosomal protein L36 [Cucumis melo var. makuwa])

HSP 1 Score: 180.3 bits (456), Expect = 1.4e-41
Identity = 88/100 (88.00%), Postives = 92/100 (92.00%), Query Frame = 0


Query: 69  MKVRASVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQGLSTFASEGPSPSLFSRNEVKQE 128
           MKVR+SVKKMCEFCRTVKR+GRVYIYCSSNPKHKQRQGLSTFA EGPSPSLFSR EVKQE
Sbjct: 1   MKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQGLSTFACEGPSPSLFSRTEVKQE 60

Query: 129 VLPSHSSGRGLASLIPQKQEPTMLPGWRMGLASILLKKHS 169
           +LPS  S  GLASLIPQK EPTML GWRMGLASILLKKH+
Sbjct: 61  ILPSQGSRMGLASLIPQKNEPTMLLGWRMGLASILLKKHN 100

[Close]

BLAST of Lsi06G009730 vs. NCBI nr
Match: XP_022933442.1 (uncharacterized protein LOC111440855 [Cucurbita moschata] >XP_023531008.1 uncharacterized protein LOC111793393 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 179.1 bits (453), Expect = 3.2e-41
Identity = 88/100 (88.00%), Postives = 93/100 (93.00%), Query Frame = 0


Query: 69  MKVRASVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQGLSTFASEGPSPSLFSRNEVKQE 128
           MKVRASVKKMCEFCRTV+RRGRVYIYCS+NPKHKQRQGLSTFASE PSPSLFSR+EVKQE
Sbjct: 1   MKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQGLSTFASEAPSPSLFSRSEVKQE 60

Query: 129 VLPSHSSGRGLASLIPQKQEPTMLPGWRMGLASILLKKHS 169
           +LPSHSS  GLASLIPQK EPTML GWRMGLASIL KK +
Sbjct: 61  ILPSHSSRTGLASLIPQKHEPTMLFGWRMGLASILWKKQN 100

[Close]

BLAST of Lsi06G009730 vs. NCBI nr
Match: KAG7023520.1 (rpmJ, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 179.1 bits (453), Expect = 3.2e-41
Identity = 87/100 (87.00%), Postives = 92/100 (92.00%), Query Frame = 0


Query: 69  MKVRASVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQGLSTFASEGPSPSLFSRNEVKQE 128
           MKVRASVKKMCEFCRTVKRRGRVY+YCSSNPKHKQRQGLST ASEGPSP LF  +EVKQE
Sbjct: 1   MKVRASVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLSTSASEGPSPHLFPSSEVKQE 60

Query: 129 VLPSHSSGRGLASLIPQKQEPTMLPGWRMGLASILLKKHS 169
           +LPSHSS  GLASL+PQK EPTML GWRMGLASILLKKH+
Sbjct: 61  ILPSHSSRTGLASLLPQKHEPTMLIGWRMGLASILLKKHN 100

[Close]

BLAST of Lsi06G009730 vs. TAIR 10
Match: AT5G20180.1 (Ribosomal protein L36 )

HSP 1 Score: 120.6 bits (301), Expect = 1.2e-27
Identity = 64/101 (63.37%), Postives = 75/101 (74.26%), Query Frame = 0


Query: 69  MKVRASVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQGLSTFASEGPSPS-LFSRNEVKQ 128
           MKVR+SVKKMCEFC+TVKRRGRVY+ CSSNPKHKQRQG S+FA EG +PS LF+     Q
Sbjct: 1   MKVRSSVKKMCEFCKTVKRRGRVYVICSSNPKHKQRQGFSSFAYEGITPSPLFAEPIASQ 60

Query: 129 EV--LPSHSSGRGLASLIPQKQEPTMLPGWRMGLASILLKK 167
           E+  LP      GLASL+ ++  PT   GWR GLASIL K+
Sbjct: 61  ELVRLPGQGVSAGLASLLHKRPMPTAYFGWRSGLASILFKQ 101

[Close]

BLAST of Lsi06G009730 vs. TAIR 10
Match: AT5G20180.2 (Ribosomal protein L36 )

HSP 1 Score: 120.6 bits (301), Expect = 1.2e-27
Identity = 64/101 (63.37%), Postives = 75/101 (74.26%), Query Frame = 0


Query: 69  MKVRASVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQGLSTFASEGPSPS-LFSRNEVKQ 128
           MKVR+SVKKMCEFC+TVKRRGRVY+ CSSNPKHKQRQG S+FA EG +PS LF+     Q
Sbjct: 1   MKVRSSVKKMCEFCKTVKRRGRVYVICSSNPKHKQRQGFSSFAYEGITPSPLFAEPIASQ 60

Query: 129 EV--LPSHSSGRGLASLIPQKQEPTMLPGWRMGLASILLKK 167
           E+  LP      GLASL+ ++  PT   GWR GLASIL K+
Sbjct: 61  ELVRLPGQGVSAGLASLLHKRPMPTAYFGWRSGLASILFKQ 101

[Close]

BLAST of Lsi06G009730 vs. TAIR 10
Match: ATCG00760.1 (ribosomal protein L36 )

HSP 1 Score: 58.5 bits (140), Expect = 5.8e-09
Identity = 25/38 (65.79%), Postives = 33/38 (86.84%), Query Frame = 0


Query: 69  MKVRASVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQG 107
           MK+RASV+K+CE CR ++RRGR+ + C SNP+HKQRQG
Sbjct: 1   MKIRASVRKICEKCRLIRRRGRIIVIC-SNPRHKQRQG 37

The following BLAST results are available for this feature:

BLAST of Lsi06G009730 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P73300	1.8e-10	76.32	50S ribosomal protein L36 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=111...	[more]
B3WAJ5	5.1e-10	76.32	50S ribosomal protein L36 OS=Lactobacillus casei (strain BL23) OX=543734 GN=rpmJ...	[more]
Q035A6	5.1e-10	76.32	50S ribosomal protein L36 OS=Lactobacillus paracasei (strain ATCC 334 / BCRC 170...	[more]
A5VLI2	6.7e-10	76.32	50S ribosomal protein L36 OS=Lactobacillus reuteri (strain DSM 20016) OX=557436 ...	[more]
B2G8V5	6.7e-10	76.32	50S ribosomal protein L36 OS=Lactobacillus reuteri (strain JCM 1112) OX=557433 G...	[more]

BLAST of Lsi06G009730 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3B8W2	6.9e-42	88.00	Ribosomal protein OS=Cucumis melo OX=3656 GN=LOC103487446 PE=3 SV=1	[more]
A0A5A7U4L3	6.9e-42	88.00	Ribosomal protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold163G00...	[more]
A0A6J1EZS5	1.5e-41	88.00	Ribosomal protein OS=Cucurbita moschata OX=3662 GN=LOC111440855 PE=3 SV=1	[more]
A0A6J1JBN8	2.0e-41	87.00	Ribosomal protein OS=Cucurbita maxima OX=3661 GN=LOC111485318 PE=3 SV=1	[more]
A0A6J1CT08	2.6e-41	86.00	Ribosomal protein OS=Momordica charantia OX=3673 GN=LOC111014487 PE=3 SV=1	[more]

BLAST of Lsi06G009730 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004150587.2	2.6e-43	84.40	uncharacterized protein LOC101223220 [Cucumis sativus] >KGN65627.2 hypothetical ...	[more]
XP_038879717.1	1.7e-42	90.00	uncharacterized protein LOC120071478 [Benincasa hispida]	[more]
XP_008443993.2	1.4e-41	88.00	PREDICTED: uncharacterized protein LOC103487446 [Cucumis melo] >XP_008443994.2 P...	[more]
XP_022933442.1	3.2e-41	88.00	uncharacterized protein LOC111440855 [Cucurbita moschata] >XP_023531008.1 unchar...	[more]
KAG7023520.1	3.2e-41	87.00	rpmJ, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of Lsi06G009730 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G20180.1	1.2e-27	63.37	Ribosomal protein L36	[more]
AT5G20180.2	1.2e-27	63.37	Ribosomal protein L36	[more]
ATCG00760.1	5.8e-09	65.79	ribosomal protein L36	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000473	Ribosomal protein L36	PFAM	PF00444	Ribosomal_L36	coord: 69..106 e-value: 1.9E-21 score: 76.0
IPR000473	Ribosomal protein L36	TIGRFAM	TIGR01022	TIGR01022	coord: 69..106 e-value: 1.7E-17 score: 61.2
IPR000473	Ribosomal protein L36	PROSITE	PS00828	RIBOSOMAL_L36	coord: 79..105
IPR000473	Ribosomal protein L36	HAMAP	MF_00251	Ribosomal_L36	coord: 69..106 score: 18.483528
None	No IPR available	PANTHER	PTHR18804	FAMILY NOT NAMED	coord: 69..166
None	No IPR available	PANTHER	PTHR18804:SF16	RIBOSOMAL PROTEIN	coord: 69..166
IPR035977	Ribosomal protein L36 superfamily	SUPERFAMILY	57840	Ribosomal protein L36	coord: 69..106

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi06G009730.1	Lsi06G009730.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome