Lsi06G009350 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi06G009350
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	GTP-binding nuclear protein
Location	chr06: 19255030 .. 19257967 (+)
RNA-Seq Expression	Lsi06G009350
Synteny	Lsi06G009350

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGCCCCAAAATTCAAAAAACTCAAGATTCAATTCGATGGGGAAAAGCAACGGCGGAGCGTGATCCGATTAACAATCCAACGGTCAAAAGAATAGCGTCAGTTGAAAGCCAGTAGAGCTTAGCCTATAAACCCTCGTCCTCAAAACTCTGAACCCATTTTAACCTAAATCGCCGATTTCTTCCTCTCGCTTCGCATTTCTAATTCGACGCATTCCAATGGTGAGTACTCTCTTTTACGCTCTGTTTTTCATTCGCTGACTTTTCTCAGTATTTATTGATCCTTTTTCCTGTTGAATTTCATAGGCTTTGCCGGACCAGAAGACTGTTGATTATCCGAGTTTCAAGCTTGTGATTGTTGGCGATGGTGGCACTGGTATGTTCTTTTTTTCCGTTTTTTCTACGAGAACAATTATCACTTGTGATCGCTGTATCATATCTAATGGTCATCGCAATATAGCATTTCGGACGCAACATGGTGTTTTCAAGCTAGTAGTAATAAGTTGAGCTTGGAGTGAGAAGAAGAGAGCTTAAACCTTGAAACTATGTTAATGCCGTATGATTTAAACATAGATTTAGGGTTTTAATTTTTGGTCAGCACTTGATAGTCGAAAGGTATTCAAGATTAATTCTTTTAAGAGAACGTATGATCCACAGTAACTTCTTTATCTTTTTGGCTGCGATAATTTAAACAGGAAATTGGTCCACCTTCGTTATTGTCTGTTGGTTGTCTATAAGATCTTGAAAATTCATTACATCTCCTTGCACATGAGGATTTTGAAACGGTTACAACAAAGGAAGAAAGAAAGAAAAGAGATTTACGAACTTTTCGGATATTGGATTTCAATTGTTTTTATTGCTTCAGTTTAAAGGCTTTTCCTTGGTCGAGATGGATTCATCAAGTACTTAACAAGACTTCAAATTACGAGTATGATTGAATTATTTATGTTATATTGCTCAGGAAAAACAACTTTTGTGAAGAGACATCTCACAGGGGAGTTTGAAAAGAAATACGAACGTAAGCATTTTTGCAATCTTTTTTCTTTCCATTTTTTAGTTTATTCATTGTTAGGTTTTCTTGAAAATAAACAAACAACTTATAAGTATGAATTTGTCCTTCTATTTTTTCTTATGAACTTTTAGCAACCATTGGAGTGGAAGTGCACCCTTTGGACTTCTTCACCAACTGTGGGAAAATTAGATTTTACTGCTGGGACACTGCTGGGCAGGAGAAGTTCGGTGGTTTACGGGATGGCTACTAGTAAGTTAAAGAATTAGGTCTTTTATTCTTTTGGATTTGGATTATGTTTATGCTCCCAAGTTTCGATATTTCCGGTTATACTTTGTTGCACATTTTCCTCATTTCTGTGGGGAGTGTTTTTCGACAATCATTTTCCCTCTCAAGTATGCCTTTACTGTTTATTCCTCAACATGAACTGAAACATACAAACTAATTGTAACTTATTCCTCTAGCAACATTGTTGAATTTTCTTTATGCTCTTGTACATTTATTTGATCTGGTAGATTATTTTATCTTTACTACCTTTTTGGGTCTGCTTTGAGATCCTGTTATGTCATGGTGTTACTTTCTGATGGACTTTCATTTCTGTTCTGATTTCAATTTCCTCCTACCGCTGACATTCCTTATTTTGTGTCTGAATCCATGATTGCAGCATCCACGGGCAATGTGCAATCATCATGTTTGATGTTACTGCCAGATTGACATACAAAAATGTTCCTACATGGCATCGTGATCTTTGCAGGTAACCTAACAATTGTTTGTAGGAAACAAAACAGTTGTATATGAACGAATTGTTGCAATGTCAGGGCGTTCTTCTGTAAGCTGCTTACCATCTGATGACTTATTAACCTGCAGGGTGTGTGAGAATATTCCCATTGTTCTTTGTGGAAACAAGGTCGATGTGAAAAACAGGCAGGTTAAGGCCAAGCAAGTCACATTCCACAGGAAGAAGAACCTACAGTATTATGAAATTTCTGCGAAGAGTAACTACAACTTTGAAAAACCATTCCTGTACTTGGCCAGGAAGTTAGCTGGGTAAATCCAGTTCCCAGTTTACTTTGTATTGCCTTTTTCTTTAATATGGGAACTTTCATGACAATGGACTTCCATTTCTTGTGGCGATTCAGGGATCCTAACATTCATTTTGTGGAGTCTCCAGCTCTAGCTCCTCCTGAAGTACACATTGACTTGGCTGCCCAGCAACAGTGAGACATTCTCATCCTAAAGTCTTAACTAATGAAACCATTCACATTCCTTGGAGTAATCCATATCAACATGTTGCTTATTTTCTGCAGGCATGAAGCTGAATTGGTGGCAGCTGCCAGTCAACCTCTTCCAGATGACGACGACGACGCTTTCGAGTAAAAAGGTCAATCATCTGGTGACGATGCCCTTTGCATATCTATTTTGAGTGAGATTTTTTTCTCCTTGCTAGGATTAACAGAAGGGAATAGGTGGGCAGGGTATGGCTGAGGATTGAAACTTGAATTTTGAAAACGTTAGTTTTCTTCCCCCTTAGATGAAAGAAATTTGTTGTGGTGTAGATGGTGGGTTTCTGTTGGTGAGATTCTCTATCGATTATAATAGAGAGCCACATGGCCTTCGATGAAAGTTTCATTATGCAGAGTTTTTCTATTCAGTGTTTCACTATTTGATTTGTGTTCATTATTCTCTTTATTTCTTGTCTGGGGTTATCTTTTGCTCCTAGACACTTGTGTGAACTATGTTCATTGGACTGGATGGGAATTGCATTTTGGTGGCAACATTGTTCTCATGAATAAGAATAGGATGTAGTAAGTGAGTGGAGAATAAATTAGTAGGTTTATAGGAGTTCATTTATGCTTCTATCCTTTCTAGGTAATATTCTTCAACGAGTTATTAAAATATAGCAAAACTATAGAATCATAATCTTATTAATATG

mRNA sequence

CGCCCCAAAATTCAAAAAACTCAAGATTCAATTCGATGGGGAAAAGCAACGGCGGAGCGTGATCCGATTAACAATCCAACGGCTTTGCCGGACCAGAAGACTGTTGATTATCCGAGTTTCAAGCTTGTGATTGTTGGCGATGGTGGCACTGGTATGTTCTTTTTTTCCGTTTTTTCTACGAGAACAATTATCACTTGTGATCGCTGTATCATATCTAATGGTCATCGCAATATAGCATTTCGGACGCAACATGGTGTTTTCAAGCTAGTAGGTTTTAATTTTTGGTCAGCACTTGATAGTCGAAAGGTATTCAAGATTAATTCTTTTAAGAGAACGTATGATCCACAGAAATTGGTCCACCTTCGTTATTGTCTGTTGGTTGTCTATAAGATCTTGAAAATTCATTACATCTCCTTGCACATGAGGATTTTGAAACGGTTACAACAAAGGAAGAAAGAAAGAAAAGAGATTTACGAACTTTTCGGATATTGGATTTCAATTTTTAAAGGCTTTTCCTTGGTCGAGATGGATTCATCAAGAAAAACAACTTTTGTGAAGAGACATCTCACAGGGGAGTTTGAAAAGAAATACGAACCAACCATTGGAGTGGAAGTGCACCCTTTGGACTTCTTCACCAACTGTGGGAAAATTAGATTTTACTGCTGGGACACTGCTGGGCAGGAGAAGTTCGGTGGTTTACGGGATGGCTACTACATCCACGGGCAATGTGCAATCATCATGTTTGATGTTACTGCCAGATTGACATACAAAAATGTTCCTACATGGCATCGAAACAAAACAGTTGTATATGAACGAATTGTTGCAATGTCAGGGCGTTCTTCTGTAAGCTGCTTACCATCTGATGACTTATTAACCTGCAGGGTGTGTGAGAATATTCCCATTGTTCTTTGTGGAAACAAGGTCGATGTGAAAAACAGGCAGGTTAAGGCCAAGCAAGTCACATTCCACAGGAAGAAGAACCTACAGTATTATGAAATTTCTGCGAAGAGTAACTACAACTTTGAAAAACCATTCCTGTACTTGGCCAGGAAGTTAGCTGGGGATCCTAACATTCATTTTGTGGAGTCTCCAGCTCTAGCTCCTCCTGAAGTACACATTGACTTGGCTGCCCAGCAACAGCATGAAGCTGAATTGGTGGCAGCTGCCAGTCAACCTCTTCCAGATGACGACGACGACGCTTTCGAGTAAAAAGGTCAATCATCTGGTGACGATGCCCTTTGCATATCTATTTTGAGTGAGATTTTTTTCTCCTTGCTAGGATTAACAGAAGGGAATAGGTGGGCAGGGTATGGCTGAGGATTGAAACTTGAATTTTGAAAACGTTAGTTTTCTTCCCCCTTAGATGAAAGAAATTTGTTGTGGTGTAGATGGTGGGTTTCTGTTGGTGAGATTCTCTATCGATTATAATAGAGAGCCACATGGCCTTCGATGAAAGTTTCATTATGCAGAGTTTTTCTATTCAGTGTTTCACTATTTGATTTGTGTTCATTATTCTCTTTATTTCTTGTCTGGGGTTATCTTTTGCTCCTAGACACTTGTGTGAACTATGTTCATTGGACTGGATGGGAATTGCATTTTGGTGGCAACATTGTTCTCATGAATAAGAATAGGATGTAGTAAGTGAGTGGAGAATAAATTAGTAGGTTTATAGGAGTTCATTTATGCTTCTATCCTTTCTAGGTAATATTCTTCAACGAGTTATTAAAATATAGCAAAACTATAGAATCATAATCTTATTAATATG

Coding sequence (CDS)

CGCCCCAAAATTCAAAAAACTCAAGATTCAATTCGATGGGGAAAAGCAACGGCGGAGCGTGATCCGATTAACAATCCAACGGCTTTGCCGGACCAGAAGACTGTTGATTATCCGAGTTTCAAGCTTGTGATTGTTGGCGATGGTGGCACTGGTATGTTCTTTTTTTCCGTTTTTTCTACGAGAACAATTATCACTTGTGATCGCTGTATCATATCTAATGGTCATCGCAATATAGCATTTCGGACGCAACATGGTGTTTTCAAGCTAGTAGGTTTTAATTTTTGGTCAGCACTTGATAGTCGAAAGGTATTCAAGATTAATTCTTTTAAGAGAACGTATGATCCACAGAAATTGGTCCACCTTCGTTATTGTCTGTTGGTTGTCTATAAGATCTTGAAAATTCATTACATCTCCTTGCACATGAGGATTTTGAAACGGTTACAACAAAGGAAGAAAGAAAGAAAAGAGATTTACGAACTTTTCGGATATTGGATTTCAATTTTTAAAGGCTTTTCCTTGGTCGAGATGGATTCATCAAGAAAAACAACTTTTGTGAAGAGACATCTCACAGGGGAGTTTGAAAAGAAATACGAACCAACCATTGGAGTGGAAGTGCACCCTTTGGACTTCTTCACCAACTGTGGGAAAATTAGATTTTACTGCTGGGACACTGCTGGGCAGGAGAAGTTCGGTGGTTTACGGGATGGCTACTACATCCACGGGCAATGTGCAATCATCATGTTTGATGTTACTGCCAGATTGACATACAAAAATGTTCCTACATGGCATCGAAACAAAACAGTTGTATATGAACGAATTGTTGCAATGTCAGGGCGTTCTTCTGTAAGCTGCTTACCATCTGATGACTTATTAACCTGCAGGGTGTGTGAGAATATTCCCATTGTTCTTTGTGGAAACAAGGTCGATGTGAAAAACAGGCAGGTTAAGGCCAAGCAAGTCACATTCCACAGGAAGAAGAACCTACAGTATTATGAAATTTCTGCGAAGAGTAACTACAACTTTGAAAAACCATTCCTGTACTTGGCCAGGAAGTTAGCTGGGGATCCTAACATTCATTTTGTGGAGTCTCCAGCTCTAGCTCCTCCTGAAGTACACATTGACTTGGCTGCCCAGCAACAGCATGAAGCTGAATTGGTGGCAGCTGCCAGTCAACCTCTTCCAGATGACGACGACGACGCTTTCGAGTAA

Protein sequence

RPKIQKTQDSIRWGKATAERDPINNPTALPDQKTVDYPSFKLVIVGDGGTGMFFFSVFSTRTIITCDRCIISNGHRNIAFRTQHGVFKLVGFNFWSALDSRKVFKINSFKRTYDPQKLVHLRYCLLVVYKILKIHYISLHMRILKRLQQRKKERKEIYELFGYWISIFKGFSLVEMDSSRKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRNKTVVYERIVAMSGRSSVSCLPSDDLLTCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNIHFVESPALAPPEVHIDLAAQQQHEAELVAAASQPLPDDDDDAFE

Homology

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BLAST of Lsi06G009350 vs. ExPASy Swiss-Prot
Match: P54766 (GTP-binding nuclear protein Ran1B (Fragment) OS=Lotus japonicus OX=34305 GN=RAN1B PE=2 SV=1)

HSP 1 Score: 387.5 bits (994), Expect = 1.8e-106
Identity = 190/222 (85.59%), Postives = 193/222 (86.94%), Query Frame = 0


Query: 181 KTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIH 240
           KTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIH
Sbjct: 14  KTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIH 73

Query: 241 GQCAIIMFDVTARLTYKNVPTWHRNKTVVYERIVAMSGRSSVSCLPSDDLLTCRVCENIP 300
           GQCAIIMFDVTARLTYKNVPTWHR+                           CRVCENIP
Sbjct: 74  GQCAIIMFDVTARLTYKNVPTWHRD--------------------------LCRVCENIP 133

Query: 301 IVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNIHF 360
           IVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPN+HF
Sbjct: 134 IVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHF 193

Query: 361 VESPALAPPEVHIDLAAQQQHEAELVAAASQPLPDDDDDAFE 403
           VESPALAPPEV IDLAAQQQHEAEL AAASQPLPDDDDDAF+
Sbjct: 194 VESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDDDAFD 209

[Close]

BLAST of Lsi06G009350 vs. ExPASy Swiss-Prot
Match: P54765 (GTP-binding nuclear protein Ran1A (Fragment) OS=Lotus japonicus OX=34305 GN=RAN1A PE=2 SV=1)

HSP 1 Score: 385.6 bits (989), Expect = 7.0e-106
Identity = 189/222 (85.14%), Postives = 192/222 (86.49%), Query Frame = 0


Query: 181 KTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIH 240
           KTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIH
Sbjct: 14  KTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIH 73

Query: 241 GQCAIIMFDVTARLTYKNVPTWHRNKTVVYERIVAMSGRSSVSCLPSDDLLTCRVCENIP 300
           GQCAIIMFDVTARLTYKNVPTWHR+                           CRVCENIP
Sbjct: 74  GQCAIIMFDVTARLTYKNVPTWHRD--------------------------LCRVCENIP 133

Query: 301 IVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNIHF 360
           IVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPN+HF
Sbjct: 134 IVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHF 193

Query: 361 VESPALAPPEVHIDLAAQQQHEAELVAAASQPLPDDDDDAFE 403
           VESPALAPPEV IDLAAQQQHEAEL  AASQPLPDDDDDAF+
Sbjct: 194 VESPALAPPEVQIDLAAQQQHEAELAQAASQPLPDDDDDAFD 209

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BLAST of Lsi06G009350 vs. ExPASy Swiss-Prot
Match: P41918 (GTP-binding nuclear protein Ran-A1 OS=Nicotiana tabacum OX=4097 GN=RAN-A1 PE=2 SV=1)

HSP 1 Score: 384.4 bits (986), Expect = 1.6e-105
Identity = 188/222 (84.68%), Postives = 192/222 (86.49%), Query Frame = 0


Query: 181 KTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIH 240
           KTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIH
Sbjct: 26  KTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIH 85

Query: 241 GQCAIIMFDVTARLTYKNVPTWHRNKTVVYERIVAMSGRSSVSCLPSDDLLTCRVCENIP 300
           GQCAIIMFDVTARLTYKNVPTWHR+                           CRVCENIP
Sbjct: 86  GQCAIIMFDVTARLTYKNVPTWHRD--------------------------LCRVCENIP 145

Query: 301 IVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNIHF 360
           IVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPN+HF
Sbjct: 146 IVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHF 205

Query: 361 VESPALAPPEVHIDLAAQQQHEAELVAAASQPLPDDDDDAFE 403
           VESPALAPPEV IDLAAQQQHEAEL AAASQPLPDDDD+ F+
Sbjct: 206 VESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDDETFD 221

[Close]

BLAST of Lsi06G009350 vs. ExPASy Swiss-Prot
Match: Q8H156 (GTP-binding nuclear protein Ran-3 OS=Arabidopsis thaliana OX=3702 GN=RAN3 PE=1 SV=2)

HSP 1 Score: 384.0 bits (985), Expect = 2.0e-105
Identity = 189/222 (85.14%), Postives = 191/222 (86.04%), Query Frame = 0


Query: 181 KTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIH 240
           KTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIH
Sbjct: 26  KTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIH 85

Query: 241 GQCAIIMFDVTARLTYKNVPTWHRNKTVVYERIVAMSGRSSVSCLPSDDLLTCRVCENIP 300
           GQCAIIMFDVTARLTYKNVPTWHR+                           CRVCENIP
Sbjct: 86  GQCAIIMFDVTARLTYKNVPTWHRD--------------------------LCRVCENIP 145

Query: 301 IVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNIHF 360
           IVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD N+HF
Sbjct: 146 IVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDANLHF 205

Query: 361 VESPALAPPEVHIDLAAQQQHEAELVAAASQPLPDDDDDAFE 403
           VESPALAPPEV IDLAAQQQHEAEL AAASQPLPDDDDD FE
Sbjct: 206 VESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDDDTFE 221

HSP 2 Score: 50.1 bits (118), Expect = 7.0e-05
Identity = 23/28 (82.14%), Postives = 25/28 (89.29%), Query Frame = 0


Query: 28 ALPDQKTVDYPSFKLVIVGDGGTGMFFF 56
          ALP+Q+TVDYPSFKLVIVGDGGTG   F
Sbjct: 2  ALPNQQTVDYPSFKLVIVGDGGTGKTTF 29

[Close]

BLAST of Lsi06G009350 vs. ExPASy Swiss-Prot
Match: P41917 (GTP-binding nuclear protein Ran-2 OS=Arabidopsis thaliana OX=3702 GN=RAN2 PE=1 SV=3)

HSP 1 Score: 382.1 bits (980), Expect = 7.7e-105
Identity = 186/222 (83.78%), Postives = 193/222 (86.94%), Query Frame = 0


Query: 181 KTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIH 240
           KTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIH
Sbjct: 26  KTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIH 85

Query: 241 GQCAIIMFDVTARLTYKNVPTWHRNKTVVYERIVAMSGRSSVSCLPSDDLLTCRVCENIP 300
           GQCAIIMFDVTARLTYKNVPTWHR+                           CRVCENIP
Sbjct: 86  GQCAIIMFDVTARLTYKNVPTWHRD--------------------------LCRVCENIP 145

Query: 301 IVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNIHF 360
           IVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD N+HF
Sbjct: 146 IVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDQNLHF 205

Query: 361 VESPALAPPEVHIDLAAQQQHEAELVAAASQPLPDDDDDAFE 403
           VESPALAPPEVH+D+AAQQQ+EA+L AAA+QPLPDDDDDAFE
Sbjct: 206 VESPALAPPEVHLDIAAQQQNEADLAAAAAQPLPDDDDDAFE 221

HSP 2 Score: 50.1 bits (118), Expect = 7.0e-05
Identity = 23/28 (82.14%), Postives = 25/28 (89.29%), Query Frame = 0


Query: 28 ALPDQKTVDYPSFKLVIVGDGGTGMFFF 56
          ALP+Q+TVDYPSFKLVIVGDGGTG   F
Sbjct: 2  ALPNQQTVDYPSFKLVIVGDGGTGKTTF 29

[Close]

BLAST of Lsi06G009350 vs. ExPASy TrEMBL
Match: A0A5A7TXQ3 (GTP-binding nuclear protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold15G00280 PE=3 SV=1)

HSP 1 Score: 418.7 bits (1075), Expect = 2.8e-113
Identity = 239/384 (62.24%), Postives = 258/384 (67.19%), Query Frame = 0


Query: 19  ERDPINNPTALPDQKTVDYPSFKLVIVGDGGTGMFFFSVFSTRTIITCDRCIISNGHRNI 78
           ERD   +PT     KTVDYPSFKLVIVGDGGTGMFFF +  T +I      + +   +  
Sbjct: 2   ERDSTTDPT-----KTVDYPSFKLVIVGDGGTGMFFFFLAGTGSI------LFNLESQER 61

Query: 79  AFRTQHGVFKLVGFNFWSALDSRKVFKINSFKRTYDPQKLVHLRYCLLVVYKILKIHYIS 138
           + +  + +  LV      ALDS                 L   + CL  +  ++ +    
Sbjct: 62  SLKLSNVLMPLVLTKIDGALDS-----------------LSEKKTCLWSIRVLIPL---- 121

Query: 139 LHMRILKRLQQRKKERKEIYELFGYWISIFKGFSLVEMDSSRKTTFVKRHLTGEFEKKYE 198
                          R+EI        S+ K  S V M    KTTFVKRHLTGEFEKKYE
Sbjct: 122 ----------IAPDSRREIRH-----SSLHKN-SKVLMRFPGKTTFVKRHLTGEFEKKYE 181

Query: 199 PTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKN 258
           PTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKN
Sbjct: 182 PTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKN 241

Query: 259 VPTWHRNKTVVYERIVAMSGRSSVSCLPSDDLLTCRVCENIPIVLCGNKVDVKNRQVKAK 318
           VPTWHR+                           CRVCENIPIVLCGNKVDVKNRQVKAK
Sbjct: 242 VPTWHRD--------------------------LCRVCENIPIVLCGNKVDVKNRQVKAK 301

Query: 319 QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNIHFVESPALAPPEVHIDLAAQ 378
           QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD NIHFVESPALAPPEVHIDLAAQ
Sbjct: 302 QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDANIHFVESPALAPPEVHIDLAAQ 311

Query: 379 QQHEAELVAAASQPLPDDDDDAFE 403
           QQHEAELVAAASQPLPDDDDDAF+
Sbjct: 362 QQHEAELVAAASQPLPDDDDDAFD 311

[Close]

BLAST of Lsi06G009350 vs. ExPASy TrEMBL
Match: A0A6P6AT88 (GTP-binding nuclear protein OS=Durio zibethinus OX=66656 GN=LOC111312194 PE=3 SV=1)

HSP 1 Score: 393.3 bits (1009), Expect = 1.2e-105
Identity = 193/222 (86.94%), Postives = 195/222 (87.84%), Query Frame = 0


Query: 181 KTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIH 240
           KTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIH
Sbjct: 26  KTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIH 85

Query: 241 GQCAIIMFDVTARLTYKNVPTWHRNKTVVYERIVAMSGRSSVSCLPSDDLLTCRVCENIP 300
           GQCAIIMFDVTARLTYKNVPTWHR+                           CRVCENIP
Sbjct: 86  GQCAIIMFDVTARLTYKNVPTWHRD--------------------------LCRVCENIP 145

Query: 301 IVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNIHF 360
           IVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPN+HF
Sbjct: 146 IVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHF 205

Query: 361 VESPALAPPEVHIDLAAQQQHEAELVAAASQPLPDDDDDAFE 403
           VESPALAPPEVHIDLAAQQQHEAELVAAASQPLPDDDDDAFE
Sbjct: 206 VESPALAPPEVHIDLAAQQQHEAELVAAASQPLPDDDDDAFE 221

[Close]

BLAST of Lsi06G009350 vs. ExPASy TrEMBL
Match: A0A7J9MAP7 (GTP-binding nuclear protein OS=Gossypium schwendimanii OX=34291 GN=Goshw_007531 PE=3 SV=1)

HSP 1 Score: 392.9 bits (1008), Expect = 1.6e-105
Identity = 193/226 (85.40%), Postives = 195/226 (86.28%), Query Frame = 0


Query: 177 DSSRKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDG 236
           D   KTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDG
Sbjct: 97  DLEGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDG 156

Query: 237 YYIHGQCAIIMFDVTARLTYKNVPTWHRNKTVVYERIVAMSGRSSVSCLPSDDLLTCRVC 296
           YYIHGQCAIIMFDVTARLTYKNVPTWHR+                           CRVC
Sbjct: 157 YYIHGQCAIIMFDVTARLTYKNVPTWHRD--------------------------LCRVC 216

Query: 297 ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDP 356
           ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDP
Sbjct: 217 ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDP 276

Query: 357 NIHFVESPALAPPEVHIDLAAQQQHEAELVAAASQPLPDDDDDAFE 403
           N+HFVESPALAPPEVHIDLAAQQQHEAEL AAASQPLPDDDDDAFE
Sbjct: 277 NLHFVESPALAPPEVHIDLAAQQQHEAELAAAASQPLPDDDDDAFE 296

[Close]

BLAST of Lsi06G009350 vs. ExPASy TrEMBL
Match: A0A068PXN5 (GTP-binding nuclear protein OS=Citrullus lanatus OX=3654 GN=CLRan1 PE=2 SV=1)

HSP 1 Score: 392.5 bits (1007), Expect = 2.1e-105
Identity = 193/222 (86.94%), Postives = 194/222 (87.39%), Query Frame = 0


Query: 181 KTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIH 240
           KTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIH
Sbjct: 26  KTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIH 85

Query: 241 GQCAIIMFDVTARLTYKNVPTWHRNKTVVYERIVAMSGRSSVSCLPSDDLLTCRVCENIP 300
           GQCAIIMFDVTARLTYKNVPTWHR+                           CRVCENIP
Sbjct: 86  GQCAIIMFDVTARLTYKNVPTWHRD--------------------------LCRVCENIP 145

Query: 301 IVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNIHF 360
           IVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNIHF
Sbjct: 146 IVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNIHF 205

Query: 361 VESPALAPPEVHIDLAAQQQHEAELVAAASQPLPDDDDDAFE 403
           VESPALAPPEVHIDLAAQQQHEAEL AAASQPLPDDDDDAFE
Sbjct: 206 VESPALAPPEVHIDLAAQQQHEAELAAAASQPLPDDDDDAFE 221

[Close]

BLAST of Lsi06G009350 vs. ExPASy TrEMBL
Match: A0A1U8JPJ0 (GTP-binding nuclear protein OS=Gossypium hirsutum OX=3635 GN=LOC107909225 PE=3 SV=1)

HSP 1 Score: 391.7 bits (1005), Expect = 3.6e-105
Identity = 192/222 (86.49%), Postives = 194/222 (87.39%), Query Frame = 0


Query: 181 KTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIH 240
           KTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIH
Sbjct: 26  KTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIH 85

Query: 241 GQCAIIMFDVTARLTYKNVPTWHRNKTVVYERIVAMSGRSSVSCLPSDDLLTCRVCENIP 300
           GQCAIIMFDVTARLTYKNVPTWHR+                           CRVCENIP
Sbjct: 86  GQCAIIMFDVTARLTYKNVPTWHRD--------------------------LCRVCENIP 145

Query: 301 IVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNIHF 360
           IVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPN+HF
Sbjct: 146 IVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHF 205

Query: 361 VESPALAPPEVHIDLAAQQQHEAELVAAASQPLPDDDDDAFE 403
           VESPALAPPEVHIDLAAQQQHEAEL AAASQPLPDDDDDAFE
Sbjct: 206 VESPALAPPEVHIDLAAQQQHEAELAAAASQPLPDDDDDAFE 221

[Close]

BLAST of Lsi06G009350 vs. NCBI nr
Match: KAA0046736.1 (GTP-binding nuclear protein Ran-3-like [Cucumis melo var. makuwa] >TYK14513.1 GTP-binding nuclear protein Ran-3-like [Cucumis melo var. makuwa])

HSP 1 Score: 418.7 bits (1075), Expect = 5.7e-113
Identity = 239/384 (62.24%), Postives = 258/384 (67.19%), Query Frame = 0


Query: 19  ERDPINNPTALPDQKTVDYPSFKLVIVGDGGTGMFFFSVFSTRTIITCDRCIISNGHRNI 78
           ERD   +PT     KTVDYPSFKLVIVGDGGTGMFFF +  T +I      + +   +  
Sbjct: 2   ERDSTTDPT-----KTVDYPSFKLVIVGDGGTGMFFFFLAGTGSI------LFNLESQER 61

Query: 79  AFRTQHGVFKLVGFNFWSALDSRKVFKINSFKRTYDPQKLVHLRYCLLVVYKILKIHYIS 138
           + +  + +  LV      ALDS                 L   + CL  +  ++ +    
Sbjct: 62  SLKLSNVLMPLVLTKIDGALDS-----------------LSEKKTCLWSIRVLIPL---- 121

Query: 139 LHMRILKRLQQRKKERKEIYELFGYWISIFKGFSLVEMDSSRKTTFVKRHLTGEFEKKYE 198
                          R+EI        S+ K  S V M    KTTFVKRHLTGEFEKKYE
Sbjct: 122 ----------IAPDSRREIRH-----SSLHKN-SKVLMRFPGKTTFVKRHLTGEFEKKYE 181

Query: 199 PTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKN 258
           PTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKN
Sbjct: 182 PTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKN 241

Query: 259 VPTWHRNKTVVYERIVAMSGRSSVSCLPSDDLLTCRVCENIPIVLCGNKVDVKNRQVKAK 318
           VPTWHR+                           CRVCENIPIVLCGNKVDVKNRQVKAK
Sbjct: 242 VPTWHRD--------------------------LCRVCENIPIVLCGNKVDVKNRQVKAK 301

Query: 319 QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNIHFVESPALAPPEVHIDLAAQ 378
           QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD NIHFVESPALAPPEVHIDLAAQ
Sbjct: 302 QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDANIHFVESPALAPPEVHIDLAAQ 311

Query: 379 QQHEAELVAAASQPLPDDDDDAFE 403
           QQHEAELVAAASQPLPDDDDDAF+
Sbjct: 362 QQHEAELVAAASQPLPDDDDDAFD 311

[Close]

BLAST of Lsi06G009350 vs. NCBI nr
Match: KAG6507589.1 (hypothetical protein ZIOFF_032939 [Zingiber officinale])

HSP 1 Score: 398.7 bits (1023), Expect = 6.1e-107
Identity = 222/376 (59.04%), Postives = 237/376 (63.03%), Query Frame = 0


Query: 27  TALPDQKTVDYPSFKLVIVGDGGTGMFFFSVFSTRTIITCDRCIISNGHRNIAFRTQHGV 86
           TALP+Q+TVDYPSFKLV+VGDGGTG    S+FS  +   C   ++S              
Sbjct: 105 TALPNQQTVDYPSFKLVLVGDGGTGKMVLSLFSPGSSDLCQHDLVS-------------- 164

Query: 87  FKLVGFNFWSALDSRKVFKINSFKRTYDPQKLVHLRYCLLVVYKILKIHYISLHMRILKR 146
                                         KL   R  L+VV                  
Sbjct: 165 ------------------------------KLAVSRTALIVVG----------------- 224

Query: 147 LQQRKKERKEIYELFGYWISIFKGFSLVEMDSSRKTTFVKRHLTGEFEKKYEPTIGVEVH 206
                        LF  W + +            KTTFVKRHLTGEFEKKYEPTIGVEVH
Sbjct: 225 -----------LRLFFCWATQY-----------WKTTFVKRHLTGEFEKKYEPTIGVEVH 284

Query: 207 PLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRNK 266
           PLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHR+ 
Sbjct: 285 PLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRD- 344

Query: 267 TVVYERIVAMSGRSSVSCLPSDDLLTCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKK 326
                                     CRVCENIPIVLCGNKVDVK+RQVKAKQVTFHRKK
Sbjct: 345 -------------------------LCRVCENIPIVLCGNKVDVKSRQVKAKQVTFHRKK 371

Query: 327 NLQYYEISAKSNYNFEKPFLYLARKLAGDPNIHFVESPALAPPEVHIDLAAQQQHEAELV 386
           NLQYYEISAKSNYNFEKPFLYLARKLAGDPN+HFVESPALAPPEV IDLAAQQQHEAEL 
Sbjct: 405 NLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELA 371

Query: 387 AAASQPLPDDDDDAFE 403
           AAA+QPLPDDDDD  +
Sbjct: 465 AAAAQPLPDDDDDLLD 371

[Close]

BLAST of Lsi06G009350 vs. NCBI nr
Match: KAG6504182.1 (hypothetical protein ZIOFF_036513 [Zingiber officinale])

HSP 1 Score: 395.6 bits (1015), Expect = 5.2e-106
Identity = 223/377 (59.15%), Postives = 238/377 (63.13%), Query Frame = 0


Query: 26  PTALPDQKTVDYPSFKLVIVGDGGTGMFFFSVFSTRTIITCDRCIISNGHRNIAFRTQHG 85
           P ALP+Q+TVDYPSFKLV+VGDGGTG    S+F             S G  ++    QH 
Sbjct: 101 PRALPNQQTVDYPSFKLVLVGDGGTGKMVLSLF------------FSPGSSDLC---QHD 160

Query: 86  VFKLVGFNFWSALDSRKVFKINSFKRTYDPQKLVHLRYCLLVVYKILKIHYISLHMRILK 145
           +                              KL   R  L+VV                 
Sbjct: 161 LV----------------------------SKLAVSRTALIVVG---------------- 220

Query: 146 RLQQRKKERKEIYELFGYWISIFKGFSLVEMDSSRKTTFVKRHLTGEFEKKYEPTIGVEV 205
                         LF  W + +            KTTFVKRHLTGEFEKKYEPTIGVEV
Sbjct: 221 ------------LRLFFCWATQY-----------WKTTFVKRHLTGEFEKKYEPTIGVEV 280

Query: 206 HPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRN 265
           HPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHR+
Sbjct: 281 HPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRD 340

Query: 266 KTVVYERIVAMSGRSSVSCLPSDDLLTCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRK 325
                                      CRVCENIPIVLCGNKVDVK+RQVKAKQVTFHRK
Sbjct: 341 --------------------------LCRVCENIPIVLCGNKVDVKSRQVKAKQVTFHRK 369

Query: 326 KNLQYYEISAKSNYNFEKPFLYLARKLAGDPNIHFVESPALAPPEVHIDLAAQQQHEAEL 385
           KNLQYYEISAKSNYNFEKPFLYLARKLAGDPN+HFVESPALAPPEV IDLAAQQQHEAEL
Sbjct: 401 KNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAEL 369

Query: 386 VAAASQPLPDDDDDAFE 403
            AAA+QPLPDDDDD  +
Sbjct: 461 AAAAAQPLPDDDDDLLD 369

[Close]

BLAST of Lsi06G009350 vs. NCBI nr
Match: XP_022767983.1 (GTP-binding nuclear protein Ran-3-like [Durio zibethinus])

HSP 1 Score: 393.3 bits (1009), Expect = 2.6e-105
Identity = 193/222 (86.94%), Postives = 195/222 (87.84%), Query Frame = 0


Query: 181 KTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIH 240
           KTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIH
Sbjct: 26  KTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIH 85

Query: 241 GQCAIIMFDVTARLTYKNVPTWHRNKTVVYERIVAMSGRSSVSCLPSDDLLTCRVCENIP 300
           GQCAIIMFDVTARLTYKNVPTWHR+                           CRVCENIP
Sbjct: 86  GQCAIIMFDVTARLTYKNVPTWHRD--------------------------LCRVCENIP 145

Query: 301 IVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNIHF 360
           IVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPN+HF
Sbjct: 146 IVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHF 205

Query: 361 VESPALAPPEVHIDLAAQQQHEAELVAAASQPLPDDDDDAFE 403
           VESPALAPPEVHIDLAAQQQHEAELVAAASQPLPDDDDDAFE
Sbjct: 206 VESPALAPPEVHIDLAAQQQHEAELVAAASQPLPDDDDDAFE 221

[Close]

BLAST of Lsi06G009350 vs. NCBI nr
Match: XP_038879205.1 (GTP-binding nuclear protein Ran1B [Benincasa hispida])

HSP 1 Score: 392.9 bits (1008), Expect = 3.3e-105
Identity = 193/222 (86.94%), Postives = 195/222 (87.84%), Query Frame = 0


Query: 181 KTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIH 240
           KTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIH
Sbjct: 26  KTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIH 85

Query: 241 GQCAIIMFDVTARLTYKNVPTWHRNKTVVYERIVAMSGRSSVSCLPSDDLLTCRVCENIP 300
           GQCAIIMFDVTARLTYKNVPTWHR+                           CRVCENIP
Sbjct: 86  GQCAIIMFDVTARLTYKNVPTWHRD--------------------------LCRVCENIP 145

Query: 301 IVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNIHF 360
           IVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNIHF
Sbjct: 146 IVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNIHF 205

Query: 361 VESPALAPPEVHIDLAAQQQHEAELVAAASQPLPDDDDDAFE 403
           VESPALAPPEVHIDLAAQQQHEAELVAAASQPLPDDDDDAF+
Sbjct: 206 VESPALAPPEVHIDLAAQQQHEAELVAAASQPLPDDDDDAFD 221

[Close]

BLAST of Lsi06G009350 vs. TAIR 10
Match: AT5G55190.1 (RAN GTPase 3 )

HSP 1 Score: 384.0 bits (985), Expect = 1.4e-106
Identity = 189/222 (85.14%), Postives = 191/222 (86.04%), Query Frame = 0


Query: 181 KTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIH 240
           KTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIH
Sbjct: 26  KTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIH 85

Query: 241 GQCAIIMFDVTARLTYKNVPTWHRNKTVVYERIVAMSGRSSVSCLPSDDLLTCRVCENIP 300
           GQCAIIMFDVTARLTYKNVPTWHR+                           CRVCENIP
Sbjct: 86  GQCAIIMFDVTARLTYKNVPTWHRD--------------------------LCRVCENIP 145

Query: 301 IVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNIHF 360
           IVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD N+HF
Sbjct: 146 IVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDANLHF 205

Query: 361 VESPALAPPEVHIDLAAQQQHEAELVAAASQPLPDDDDDAFE 403
           VESPALAPPEV IDLAAQQQHEAEL AAASQPLPDDDDD FE
Sbjct: 206 VESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDDDTFE 221

HSP 2 Score: 50.1 bits (118), Expect = 5.0e-06
Identity = 23/28 (82.14%), Postives = 25/28 (89.29%), Query Frame = 0


Query: 28 ALPDQKTVDYPSFKLVIVGDGGTGMFFF 56
          ALP+Q+TVDYPSFKLVIVGDGGTG   F
Sbjct: 2  ALPNQQTVDYPSFKLVIVGDGGTGKTTF 29

[Close]

BLAST of Lsi06G009350 vs. TAIR 10
Match: AT5G20020.1 (RAS-related GTP-binding nuclear protein 2 )

HSP 1 Score: 382.1 bits (980), Expect = 5.5e-106
Identity = 186/222 (83.78%), Postives = 193/222 (86.94%), Query Frame = 0


Query: 181 KTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIH 240
           KTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIH
Sbjct: 26  KTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIH 85

Query: 241 GQCAIIMFDVTARLTYKNVPTWHRNKTVVYERIVAMSGRSSVSCLPSDDLLTCRVCENIP 300
           GQCAIIMFDVTARLTYKNVPTWHR+                           CRVCENIP
Sbjct: 86  GQCAIIMFDVTARLTYKNVPTWHRD--------------------------LCRVCENIP 145

Query: 301 IVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNIHF 360
           IVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD N+HF
Sbjct: 146 IVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDQNLHF 205

Query: 361 VESPALAPPEVHIDLAAQQQHEAELVAAASQPLPDDDDDAFE 403
           VESPALAPPEVH+D+AAQQQ+EA+L AAA+QPLPDDDDDAFE
Sbjct: 206 VESPALAPPEVHLDIAAQQQNEADLAAAAAQPLPDDDDDAFE 221

HSP 2 Score: 50.1 bits (118), Expect = 5.0e-06
Identity = 23/28 (82.14%), Postives = 25/28 (89.29%), Query Frame = 0


Query: 28 ALPDQKTVDYPSFKLVIVGDGGTGMFFF 56
          ALP+Q+TVDYPSFKLVIVGDGGTG   F
Sbjct: 2  ALPNQQTVDYPSFKLVIVGDGGTGKTTF 29

[Close]

BLAST of Lsi06G009350 vs. TAIR 10
Match: AT5G20010.1 (RAS-related nuclear protein-1 )

HSP 1 Score: 375.6 bits (963), Expect = 5.1e-104
Identity = 183/222 (82.43%), Postives = 191/222 (86.04%), Query Frame = 0


Query: 181 KTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIH 240
           KTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIH
Sbjct: 26  KTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIH 85

Query: 241 GQCAIIMFDVTARLTYKNVPTWHRNKTVVYERIVAMSGRSSVSCLPSDDLLTCRVCENIP 300
           GQCAIIMFDVTARLTYKNVPTWHR+                           CRVCENIP
Sbjct: 86  GQCAIIMFDVTARLTYKNVPTWHRD--------------------------LCRVCENIP 145

Query: 301 IVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNIHF 360
           IVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD N+HF
Sbjct: 146 IVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDQNLHF 205

Query: 361 VESPALAPPEVHIDLAAQQQHEAELVAAASQPLPDDDDDAFE 403
           VE+PALAPPEVHID+A QQ++EAEL+ AA+QPLPDDDDD FE
Sbjct: 206 VETPALAPPEVHIDIADQQKNEAELLQAAAQPLPDDDDDIFE 221

HSP 2 Score: 50.1 bits (118), Expect = 5.0e-06
Identity = 23/28 (82.14%), Postives = 25/28 (89.29%), Query Frame = 0


Query: 28 ALPDQKTVDYPSFKLVIVGDGGTGMFFF 56
          ALP+Q+TVDYPSFKLVIVGDGGTG   F
Sbjct: 2  ALPNQQTVDYPSFKLVIVGDGGTGKTTF 29

[Close]

BLAST of Lsi06G009350 vs. TAIR 10
Match: AT5G55080.1 (ras-related nuclear protein 4 )

HSP 1 Score: 247.3 bits (630), Expect = 2.1e-65
Identity = 125/213 (58.69%), Postives = 148/213 (69.48%), Query Frame = 0


Query: 181 KTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIH 240
           KTTF+KRHLTGEFE   EPT+GV+++PLDFFTN GKIRF CWDTAGQEK+ GL+D YYIH
Sbjct: 26  KTTFLKRHLTGEFEHNTEPTLGVDIYPLDFFTNRGKIRFECWDTAGQEKYSGLKDAYYIH 85

Query: 241 GQCAIIMFDVTARLTYKNVPTWHRNKTVVYERIVAMSGRSSVSCLPSDDLLTCRVCENIP 300
           GQCAIIMFDVTAR TY N+  W+R+                            RVC+NIP
Sbjct: 86  GQCAIIMFDVTARHTYMNIDRWYRDLR--------------------------RVCKNIP 145

Query: 301 IVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNIHF 360
           IVLCGNKVDV +RQ+K K V++HRKK LQYYE+SAK+N NFEKPFLYLAR++AGD  + F
Sbjct: 146 IVLCGNKVDVPSRQIKPKHVSYHRKKCLQYYEMSAKNNCNFEKPFLYLARRIAGDAKLSF 205

Query: 361 VESPALAPPEVHIDLAAQQQHEAELVAAASQPL 394
           VES     PE  ID    +  +   V A +QPL
Sbjct: 206 VES-----PEAQIDNLDVESLQLLTVEAGTQPL 207

[Close]

BLAST of Lsi06G009350 vs. TAIR 10
Match: AT4G39890.1 (RAB GTPase homolog H1C )

HSP 1 Score: 80.1 bits (196), Expect = 4.5e-15
Identity = 58/194 (29.90%), Postives = 87/194 (44.85%), Query Frame = 0


Query: 165 ISIFKGFSLVEM--DSSRKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCW 224
           +S    F LV +   S  KT+ + R +  +F+  Y+PTIG++      +     +R   W
Sbjct: 4   VSPLAKFKLVFLGDQSVGKTSIITRFMYDKFDTTYQPTIGIDFLSKTMYLEDRTVRLQLW 63

Query: 225 DTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRNKTVVYERIVAMSGRSSV 284
           DTAGQE+F  L   Y      AI+++DV+ R T+ N   W                    
Sbjct: 64  DTAGQERFRSLIPSYIRDSSVAIVVYDVSNRQTFLNTSKW-------------------- 123

Query: 285 SCLPSDDLLTCRVCENIPIVLCGNKVD-VKNRQVKAKQVTFHRKK-NLQYYEISAKSNYN 344
                +D+   R   N+ IVL GNK D V+ RQV   +     K+  + + E SAK N+N
Sbjct: 124 ----IEDVHRERGQSNVIIVLVGNKTDLVEKRQVSISEGEDKGKEYGVMFIETSAKENFN 173

Query: 345 FEKPFLYLARKLAG 355
            +  F  +A  L G
Sbjct: 184 IKALFRKIAAALPG 173

The following BLAST results are available for this feature:

BLAST of Lsi06G009350 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P54766	1.8e-106	85.59	GTP-binding nuclear protein Ran1B (Fragment) OS=Lotus japonicus OX=34305 GN=RAN1...	[more]
P54765	7.0e-106	85.14	GTP-binding nuclear protein Ran1A (Fragment) OS=Lotus japonicus OX=34305 GN=RAN1...	[more]
P41918	1.6e-105	84.68	GTP-binding nuclear protein Ran-A1 OS=Nicotiana tabacum OX=4097 GN=RAN-A1 PE=2 S...	[more]
Q8H156	2.0e-105	85.14	GTP-binding nuclear protein Ran-3 OS=Arabidopsis thaliana OX=3702 GN=RAN3 PE=1 S...	[more]
P41917	7.7e-105	83.78	GTP-binding nuclear protein Ran-2 OS=Arabidopsis thaliana OX=3702 GN=RAN2 PE=1 S...	[more]

BLAST of Lsi06G009350 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TXQ3	2.8e-113	62.24	GTP-binding nuclear protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A6P6AT88	1.2e-105	86.94	GTP-binding nuclear protein OS=Durio zibethinus OX=66656 GN=LOC111312194 PE=3 SV...	[more]
A0A7J9MAP7	1.6e-105	85.40	GTP-binding nuclear protein OS=Gossypium schwendimanii OX=34291 GN=Goshw_007531 ...	[more]
A0A068PXN5	2.1e-105	86.94	GTP-binding nuclear protein OS=Citrullus lanatus OX=3654 GN=CLRan1 PE=2 SV=1	[more]
A0A1U8JPJ0	3.6e-105	86.49	GTP-binding nuclear protein OS=Gossypium hirsutum OX=3635 GN=LOC107909225 PE=3 S...	[more]

BLAST of Lsi06G009350 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0046736.1	5.7e-113	62.24	GTP-binding nuclear protein Ran-3-like [Cucumis melo var. makuwa] >TYK14513.1 GT...	[more]
KAG6507589.1	6.1e-107	59.04	hypothetical protein ZIOFF_032939 [Zingiber officinale]	[more]
KAG6504182.1	5.2e-106	59.15	hypothetical protein ZIOFF_036513 [Zingiber officinale]	[more]
XP_022767983.1	2.6e-105	86.94	GTP-binding nuclear protein Ran-3-like [Durio zibethinus]	[more]
XP_038879205.1	3.3e-105	86.94	GTP-binding nuclear protein Ran1B [Benincasa hispida]	[more]

BLAST of Lsi06G009350 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G55190.1	1.4e-106	85.14	RAN GTPase 3	[more]
AT5G20020.1	5.5e-106	83.78	RAS-related GTP-binding nuclear protein 2	[more]
AT5G20010.1	5.1e-104	82.43	RAS-related nuclear protein-1	[more]
AT5G55080.1	2.1e-65	58.69	ras-related nuclear protein 4	[more]
AT4G39890.1	4.5e-15	29.90	RAB GTPase homolog H1C	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002041	Ran GTPase	PRINTS	PR00627	GTPRANTC4	coord: 249..270 score: 67.31 coord: 229..247 score: 89.88 coord: 182..196 score: 95.13
IPR002041	Ran GTPase	PANTHER	PTHR24071	RAN GTPASE	coord: 178..273
IPR002041	Ran GTPase	PANTHER	PTHR24071	RAN GTPASE	coord: 292..402 coord: 18..55
IPR002041	Ran GTPase	PROSITE	PS51418	RAN	coord: 151..352 score: 25.774567
None	No IPR available	SMART	SM00176	ran_sub_2	coord: 174..401 e-value: 2.8E-147 score: 505.3
None	No IPR available	SMART	SM00175	rab_sub_5	coord: 181..355 e-value: 3.0E-11 score: 30.7
None	No IPR available	SMART	SM00173	ras_sub_4	coord: 168..355 e-value: 3.2E-9 score: 16.9
None	No IPR available	PANTHER	PTHR24071:SF19	GTP-BINDING NUCLEAR PROTEIN	coord: 178..273 coord: 18..55
None	No IPR available	PANTHER	PTHR24071:SF19	GTP-BINDING NUCLEAR PROTEIN	coord: 292..402
None	No IPR available	PROSITE	PS51419	RAB	coord: 157..402 score: 15.631797
None	No IPR available	CDD	cd00877	Ran	coord: 181..360 e-value: 3.31803E-112 score: 323.484
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 176..400 e-value: 1.4E-54 score: 186.5
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 181..374
IPR001806	Small GTPase	PFAM	PF00071	Ras	coord: 181..352 e-value: 4.1E-36 score: 124.0

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi06G009350.1	Lsi06G009350.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006606	protein import into nucleus
biological_process	GO:0000054	ribosomal subunit export from nucleus
biological_process	GO:0006913	nucleocytoplasmic transport
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003924	GTPase activity
molecular_function	GO:0005525	GTP binding