Lsi06G009340 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi06G009340
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Unknown protein
Location	chr06: 19246080 .. 19246466 (+)
RNA-Seq Expression	Lsi06G009340
Synteny	Lsi06G009340

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCACTAATCTCCTCACTTTTTCCCCCGCCGGCATCCGTGCCTGTGCCGCCTCCGCCGACCGACGCTCCGAACATAACCGCCGGAAAACCGCCTCCTCCTCCTCTTCCAACTGGTGGGCCCCGGTCTTCGGCTGGTCCTCCGAACCCGACTATATCGACTCCGGCAGCAAGGCCGAAACTCGTGACCTCGCCAGCGGTACTTCAAAATCGGATCCGGAGACGAAATCCATGAGGGCTCGATTTTCCCCCGGCTGCTTCACGGAGGCGAAGGCTCGGCGGCTGCGCATGATGACGACGGAAACGGAGACATTTCACGACGTTATGTACCACTCGGCAATTGCTTCTCGCCTCGCTTCCGACTTCAAAACTCGCACCGATTCCTGA

mRNA sequence

ATGGCCACTAATCTCCTCACTTTTTCCCCCGCCGGCATCCGTGCCTGTGCCGCCTCCGCCGACCGACGCTCCGAACATAACCGCCGGAAAACCGCCTCCTCCTCCTCTTCCAACTGGTGGGCCCCGGTCTTCGGCTGGTCCTCCGAACCCGACTATATCGACTCCGGCAGCAAGGCCGAAACTCGTGACCTCGCCAGCGGTACTTCAAAATCGGATCCGGAGACGAAATCCATGAGGGCTCGATTTTCCCCCGGCTGCTTCACGGAGGCGAAGGCTCGGCGGCTGCGCATGATGACGACGGAAACGGAGACATTTCACGACGTTATGTACCACTCGGCAATTGCTTCTCGCCTCGCTTCCGACTTCAAAACTCGCACCGATTCCTGA

Coding sequence (CDS)

ATGGCCACTAATCTCCTCACTTTTTCCCCCGCCGGCATCCGTGCCTGTGCCGCCTCCGCCGACCGACGCTCCGAACATAACCGCCGGAAAACCGCCTCCTCCTCCTCTTCCAACTGGTGGGCCCCGGTCTTCGGCTGGTCCTCCGAACCCGACTATATCGACTCCGGCAGCAAGGCCGAAACTCGTGACCTCGCCAGCGGTACTTCAAAATCGGATCCGGAGACGAAATCCATGAGGGCTCGATTTTCCCCCGGCTGCTTCACGGAGGCGAAGGCTCGGCGGCTGCGCATGATGACGACGGAAACGGAGACATTTCACGACGTTATGTACCACTCGGCAATTGCTTCTCGCCTCGCTTCCGACTTCAAAACTCGCACCGATTCCTGA

Protein sequence

MATNLLTFSPAGIRACAASADRRSEHNRRKTASSSSSNWWAPVFGWSSEPDYIDSGSKAETRDLASGTSKSDPETKSMRARFSPGCFTEAKARRLRMMTTETETFHDVMYHSAIASRLASDFKTRTDS

Homology

[Close]

BLAST of Lsi06G009340 vs. ExPASy TrEMBL
Match: A0A0A0LTN7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G303705 PE=4 SV=1)

HSP 1 Score: 212.6 bits (540), Expect = 9.6e-52
Identity = 108/128 (84.38%), Postives = 119/128 (92.97%), Query Frame = 0


Query: 1   MATNLLTFSPAGIRACAASADRRSEHNRRKTASSSSSNWWAPVFGWSSEPDYIDSGSKAE 60
           MATNLLTF PAGIRACA+SADRRS+H+RRKT  SSSSNWWAPVFGWSSEPDYIDSG+KAE
Sbjct: 1   MATNLLTFPPAGIRACASSADRRSDHSRRKT--SSSSNWWAPVFGWSSEPDYIDSGNKAE 60

Query: 61  TRDLASGTSKSDPETKSMRARFSPGCFTEAKARRLRMMTTETETFHDVMYHSAIASRLAS 120
            ++LA G+SK D ETKS+R RFSPGCFTEAKAR+LRMMTTETE+FHDVMYHSAIASRLAS
Sbjct: 61  PQNLAGGSSKPDLETKSLRGRFSPGCFTEAKARQLRMMTTETESFHDVMYHSAIASRLAS 120

Query: 121 DFKTRTDS 129
           DFK+R DS
Sbjct: 121 DFKSREDS 126

[Close]

BLAST of Lsi06G009340 vs. ExPASy TrEMBL
Match: A0A5D3CSV6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold15G00250 PE=4 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 1.4e-47
Identity = 105/129 (81.40%), Postives = 116/129 (89.92%), Query Frame = 0


Query: 1   MATNLLTFSPAGIRACAASADRRSEHNRRKTASSSSSNWWAPVFGWSSEPDYIDS-GSKA 60
           MATNLLTF+PAGIRACAASADRRS+ NRRK  +SSS+NWWAPVFGWSSEPDYIDS  +KA
Sbjct: 1   MATNLLTFTPAGIRACAASADRRSDLNRRK--ASSSTNWWAPVFGWSSEPDYIDSAANKA 60

Query: 61  ETRDLASGTSKSDPETKSMRARFSPGCFTEAKARRLRMMTTETETFHDVMYHSAIASRLA 120
           E ++LA   SK D ETKS+R RFSPGCFTEAKAR+LRMMTTETE+FHDVMYHSAIASRLA
Sbjct: 61  EPQNLAGAASKPDLETKSVRGRFSPGCFTEAKARQLRMMTTETESFHDVMYHSAIASRLA 120

Query: 121 SDFKTRTDS 129
           SDFK+R DS
Sbjct: 121 SDFKSRGDS 127

[Close]

BLAST of Lsi06G009340 vs. ExPASy TrEMBL
Match: A0A1S4E4Y4 (uncharacterized protein LOC103502747 OS=Cucumis melo OX=3656 GN=LOC103502747 PE=4 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 1.4e-47
Identity = 105/129 (81.40%), Postives = 116/129 (89.92%), Query Frame = 0


Query: 1   MATNLLTFSPAGIRACAASADRRSEHNRRKTASSSSSNWWAPVFGWSSEPDYIDS-GSKA 60
           MATNLLTF+PAGIRACAASADRRS+ NRRK  +SSS+NWWAPVFGWSSEPDYIDS  +KA
Sbjct: 1   MATNLLTFTPAGIRACAASADRRSDLNRRK--ASSSTNWWAPVFGWSSEPDYIDSAANKA 60

Query: 61  ETRDLASGTSKSDPETKSMRARFSPGCFTEAKARRLRMMTTETETFHDVMYHSAIASRLA 120
           E ++LA   SK D ETKS+R RFSPGCFTEAKAR+LRMMTTETE+FHDVMYHSAIASRLA
Sbjct: 61  EPQNLAGAASKPDLETKSVRGRFSPGCFTEAKARQLRMMTTETESFHDVMYHSAIASRLA 120

Query: 121 SDFKTRTDS 129
           SDFK+R DS
Sbjct: 121 SDFKSRGDS 127

[Close]

BLAST of Lsi06G009340 vs. ExPASy TrEMBL
Match: A0A6J1HBD8 (uncharacterized protein LOC111461308 OS=Cucurbita moschata OX=3662 GN=LOC111461308 PE=4 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 7.8e-46
Identity = 99/130 (76.15%), Postives = 113/130 (86.92%), Query Frame = 0


Query: 1   MATNLLTFSPAGIRACAASADRRSEHNRRK--TASSSSSNWWAPVFGWSSEPDYIDSGSK 60
           MATNL TF+P  IRACA+SAD    HNRRK  ++SSSSSNWWAPVFGWSSEPDYIDSG+K
Sbjct: 1   MATNLFTFAPTSIRACASSAD----HNRRKASSSSSSSSNWWAPVFGWSSEPDYIDSGNK 60

Query: 61  AETRDLASGTSKSDPETKSMRARFSPGCFTEAKARRLRMMTTETETFHDVMYHSAIASRL 120
           +  ++LA G SKSDPETKS R RFSPGCFTE+KAR+LR+MT ETE+FHDVMYHSAIASRL
Sbjct: 61  SNPKNLADGVSKSDPETKSSRNRFSPGCFTESKARQLRLMTMETESFHDVMYHSAIASRL 120

Query: 121 ASDFKTRTDS 129
           A+DFK+R DS
Sbjct: 121 ATDFKSRGDS 126

[Close]

BLAST of Lsi06G009340 vs. ExPASy TrEMBL
Match: A0A6J1JBM9 (uncharacterized protein LOC111485309 OS=Cucurbita maxima OX=3661 GN=LOC111485309 PE=4 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 1.5e-44
Identity = 98/128 (76.56%), Postives = 109/128 (85.16%), Query Frame = 0


Query: 1   MATNLLTFSPAGIRACAASADRRSEHNRRKTASSSSSNWWAPVFGWSSEPDYIDSGSKAE 60
           MATNL TF+P  IRACA+SAD    HNRRKT SSSSSNWWAPVFGWSSEPDYIDS +K+ 
Sbjct: 1   MATNLFTFAPTSIRACASSAD----HNRRKT-SSSSSNWWAPVFGWSSEPDYIDSANKSN 60

Query: 61  TRDLASGTSKSDPETKSMRARFSPGCFTEAKARRLRMMTTETETFHDVMYHSAIASRLAS 120
            +  A G SKSDPETKS R RFSPGCFTE+KAR+LR+MT ETE+FHDVMYHSAIASRLA+
Sbjct: 61  PKTPADGVSKSDPETKSARNRFSPGCFTESKARQLRLMTMETESFHDVMYHSAIASRLAT 120

Query: 121 DFKTRTDS 129
           DFK+R DS
Sbjct: 121 DFKSRGDS 123

[Close]

BLAST of Lsi06G009340 vs. NCBI nr
Match: XP_038880363.1 (uncharacterized protein LOC120072011 [Benincasa hispida])

HSP 1 Score: 223.8 bits (569), Expect = 8.6e-55
Identity = 114/128 (89.06%), Postives = 120/128 (93.75%), Query Frame = 0


Query: 1   MATNLLTFSPAGIRACAASADRRSEHNRRKTASSSSSNWWAPVFGWSSEPDYIDSGSKAE 60
           MATNLLTF PAGIRACAASADRRS+HNRRKT  SSSSNWWAPVFGWSSEPDYIDS +KAE
Sbjct: 1   MATNLLTFPPAGIRACAASADRRSDHNRRKT--SSSSNWWAPVFGWSSEPDYIDSANKAE 60

Query: 61  TRDLASGTSKSDPETKSMRARFSPGCFTEAKARRLRMMTTETETFHDVMYHSAIASRLAS 120
            +DLA G SKSDPETKS+RARFSPGCFTEAKAR+LRMMTTETE+FHDVMYHSAIASRLAS
Sbjct: 61  PQDLAGGVSKSDPETKSVRARFSPGCFTEAKARQLRMMTTETESFHDVMYHSAIASRLAS 120

Query: 121 DFKTRTDS 129
           DFKTR DS
Sbjct: 121 DFKTRADS 126

[Close]

BLAST of Lsi06G009340 vs. NCBI nr
Match: XP_011656185.1 (uncharacterized protein LOC105435656 [Cucumis sativus] >KGN65295.1 hypothetical protein Csa_019984 [Cucumis sativus])

HSP 1 Score: 212.6 bits (540), Expect = 2.0e-51
Identity = 108/128 (84.38%), Postives = 119/128 (92.97%), Query Frame = 0


Query: 1   MATNLLTFSPAGIRACAASADRRSEHNRRKTASSSSSNWWAPVFGWSSEPDYIDSGSKAE 60
           MATNLLTF PAGIRACA+SADRRS+H+RRKT  SSSSNWWAPVFGWSSEPDYIDSG+KAE
Sbjct: 1   MATNLLTFPPAGIRACASSADRRSDHSRRKT--SSSSNWWAPVFGWSSEPDYIDSGNKAE 60

Query: 61  TRDLASGTSKSDPETKSMRARFSPGCFTEAKARRLRMMTTETETFHDVMYHSAIASRLAS 120
            ++LA G+SK D ETKS+R RFSPGCFTEAKAR+LRMMTTETE+FHDVMYHSAIASRLAS
Sbjct: 61  PQNLAGGSSKPDLETKSLRGRFSPGCFTEAKARQLRMMTTETESFHDVMYHSAIASRLAS 120

Query: 121 DFKTRTDS 129
           DFK+R DS
Sbjct: 121 DFKSREDS 126

[Close]

BLAST of Lsi06G009340 vs. NCBI nr
Match: XP_016903293.1 (PREDICTED: uncharacterized protein LOC103502747 [Cucumis melo] >KAA0046733.1 uncharacterized protein E6C27_scaffold216G00140 [Cucumis melo var. makuwa] >TYK14510.1 uncharacterized protein E5676_scaffold15G00250 [Cucumis melo var. makuwa])

HSP 1 Score: 198.7 bits (504), Expect = 2.9e-47
Identity = 105/129 (81.40%), Postives = 116/129 (89.92%), Query Frame = 0


Query: 1   MATNLLTFSPAGIRACAASADRRSEHNRRKTASSSSSNWWAPVFGWSSEPDYIDS-GSKA 60
           MATNLLTF+PAGIRACAASADRRS+ NRRK  +SSS+NWWAPVFGWSSEPDYIDS  +KA
Sbjct: 1   MATNLLTFTPAGIRACAASADRRSDLNRRK--ASSSTNWWAPVFGWSSEPDYIDSAANKA 60

Query: 61  ETRDLASGTSKSDPETKSMRARFSPGCFTEAKARRLRMMTTETETFHDVMYHSAIASRLA 120
           E ++LA   SK D ETKS+R RFSPGCFTEAKAR+LRMMTTETE+FHDVMYHSAIASRLA
Sbjct: 61  EPQNLAGAASKPDLETKSVRGRFSPGCFTEAKARQLRMMTTETESFHDVMYHSAIASRLA 120

Query: 121 SDFKTRTDS 129
           SDFK+R DS
Sbjct: 121 SDFKSRGDS 127

[Close]

BLAST of Lsi06G009340 vs. NCBI nr
Match: KAG6589876.1 (hypothetical protein SDJN03_15299, partial [Cucurbita argyrosperma subsp. sororia] >KAG7023547.1 hypothetical protein SDJN02_14573, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 193.7 bits (491), Expect = 9.5e-46
Identity = 99/129 (76.74%), Postives = 113/129 (87.60%), Query Frame = 0


Query: 1   MATNLLTFSPAGIRACAASADRRSEHNRRKT-ASSSSSNWWAPVFGWSSEPDYIDSGSKA 60
           MAT+L TF+P  IRACA+SAD    HNRRKT +SSSSSNWWAPVFGWSSEPDYIDSG+K+
Sbjct: 1   MATSLFTFAPTSIRACASSAD----HNRRKTSSSSSSSNWWAPVFGWSSEPDYIDSGNKS 60

Query: 61  ETRDLASGTSKSDPETKSMRARFSPGCFTEAKARRLRMMTTETETFHDVMYHSAIASRLA 120
             ++LA G SKSDPETKS R RFSPGCFTE+KAR+LR+MT ETE+FHDVMYHSAIASRLA
Sbjct: 61  NPKNLADGVSKSDPETKSARNRFSPGCFTESKARQLRLMTMETESFHDVMYHSAIASRLA 120

Query: 121 SDFKTRTDS 129
           +DFK+R DS
Sbjct: 121 TDFKSRADS 125

[Close]

BLAST of Lsi06G009340 vs. NCBI nr
Match: XP_022960569.1 (uncharacterized protein LOC111461308 [Cucurbita moschata])

HSP 1 Score: 193.0 bits (489), Expect = 1.6e-45
Identity = 99/130 (76.15%), Postives = 113/130 (86.92%), Query Frame = 0


Query: 1   MATNLLTFSPAGIRACAASADRRSEHNRRK--TASSSSSNWWAPVFGWSSEPDYIDSGSK 60
           MATNL TF+P  IRACA+SAD    HNRRK  ++SSSSSNWWAPVFGWSSEPDYIDSG+K
Sbjct: 1   MATNLFTFAPTSIRACASSAD----HNRRKASSSSSSSSNWWAPVFGWSSEPDYIDSGNK 60

Query: 61  AETRDLASGTSKSDPETKSMRARFSPGCFTEAKARRLRMMTTETETFHDVMYHSAIASRL 120
           +  ++LA G SKSDPETKS R RFSPGCFTE+KAR+LR+MT ETE+FHDVMYHSAIASRL
Sbjct: 61  SNPKNLADGVSKSDPETKSSRNRFSPGCFTESKARQLRLMTMETESFHDVMYHSAIASRL 120

Query: 121 ASDFKTRTDS 129
           A+DFK+R DS
Sbjct: 121 ATDFKSRGDS 126

[Close]

BLAST of Lsi06G009340 vs. TAIR 10
Match: AT1G52720.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G15630.1); Has 61 Blast hits to 61 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 61; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 90.1 bits (222), Expect = 1.4e-18
Identity = 51/115 (44.35%), Postives = 66/115 (57.39%), Query Frame = 0


Query: 13  IRACAASADRRSEHNRRKTASSSSSNWWAPVFGWSSEPDYIDSGSKAETRDLASGTSKSD 72
           IRA + S     + NR+K+A+     WWAP+FG  S+PDY++  S   T       +   
Sbjct: 13  IRASSGSGSLNPDQNRKKSAA-----WWAPLFGLPSDPDYLNIESSCST------VNPDK 72

Query: 73  PETKSMRARFSPGCFTEAKARRLRMMTTETETFHDVMYHSAIASRLASDFKTRTD 128
            +      +F  GCFTE KA++LR  T E  TFHDVMYHSAIASRLASD   R +
Sbjct: 73  TDISGSGQKFRRGCFTEEKAKQLRRKTAEASTFHDVMYHSAIASRLASDITGRVE 116

[Close]

BLAST of Lsi06G009340 vs. TAIR 10
Match: AT3G15630.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G52720.1); Has 61 Blast hits to 61 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 61; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 84.7 bits (208), Expect = 5.8e-17
Identity = 55/117 (47.01%), Postives = 73/117 (62.39%), Query Frame = 0


Query: 11  AGIRACAASADRR--SEHNRRKTASSSSSNWWAPVFGWSSEPDYIDSGSKAETRDLASGT 70
           A I +C+A +  R  SE +  +    SS +WWAP+FG SSEPDY++     +T +L S  
Sbjct: 2   ATIISCSALSSIRASSESDPARKKPVSSVSWWAPLFGMSSEPDYVN-----KTVNLESDL 61

Query: 71  SKSDPETKSMRARFSPGCFTEAKARRLRMMTTETETFHDVMYHSAIASRLASDFKTR 126
            K+  E +S+R      C TE KA++LR  T E  TFHDVMYHSAIASRLASD + +
Sbjct: 62  DKA--EKRSLRC-----CLTEEKAKQLRRKTAEASTFHDVMYHSAIASRLASDVRVK 106

The following BLAST results are available for this feature:

BLAST of Lsi06G009340 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi06G009340 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LTN7	9.6e-52	84.38	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G303705 PE=4 SV=1	[more]
A0A5D3CSV6	1.4e-47	81.40	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S4E4Y4	1.4e-47	81.40	uncharacterized protein LOC103502747 OS=Cucumis melo OX=3656 GN=LOC103502747 PE=...	[more]
A0A6J1HBD8	7.8e-46	76.15	uncharacterized protein LOC111461308 OS=Cucurbita moschata OX=3662 GN=LOC1114613...	[more]
A0A6J1JBM9	1.5e-44	76.56	uncharacterized protein LOC111485309 OS=Cucurbita maxima OX=3661 GN=LOC111485309...	[more]

BLAST of Lsi06G009340 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038880363.1	8.6e-55	89.06	uncharacterized protein LOC120072011 [Benincasa hispida]	[more]
XP_011656185.1	2.0e-51	84.38	uncharacterized protein LOC105435656 [Cucumis sativus] >KGN65295.1 hypothetical ...	[more]
XP_016903293.1	2.9e-47	81.40	PREDICTED: uncharacterized protein LOC103502747 [Cucumis melo] >KAA0046733.1 unc...	[more]
KAG6589876.1	9.5e-46	76.74	hypothetical protein SDJN03_15299, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022960569.1	1.6e-45	76.15	uncharacterized protein LOC111461308 [Cucurbita moschata]	[more]

BLAST of Lsi06G009340 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G52720.1	1.4e-18	44.35	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT3G15630.1	5.8e-17	47.01	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 19..83
None	No IPR available	PANTHER	PTHR34198:SF18	PROTEIN, PUTATIVE-RELATED	coord: 1..127
None	No IPR available	PANTHER	PTHR34198	OS01G0175100 PROTEIN	coord: 1..127

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi06G009340.1	Lsi06G009340.1	mRNA