Lsi06G009270 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi06G009270
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionPentatricopeptide repeat-containing protein
Locationchr06: 19133721 .. 19135601 (-)
RNA-Seq ExpressionLsi06G009270
SyntenyLsi06G009270
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATCAACTCAAACAAATTCAGAGTCAGATCTTTCGAATTGGTCTTGAAGGAGACCAAGACACAATAAACAAATTGATGGCATTCTGTGCAGACTCATCTCTTGGCAACTTGCACTATGCAGAGAGGATATTTGATTACATACAAGATCCATCCCTGTTTGTTTATAATGTGATGGTTAAAATGTATGCCAAAAGGCGAATTTTCAGAAAAGTCATTTTGCTATTTCAACAGTTGAGGGAAGATGAATTGTGGCCCGATAATTTTACTTACCCATTTGTTCTGAAAGCTATTGGTTGCTTAAGGGACGTGAGGCAAGGTGAAAAGGTTCATGGCTTTGTGGTGAAGACAGGAATGGATTTTGATAATTATGTTTGTAATTCACTTATGGATATGTATTCTGAATTGGACAATGTTGAGAATGCTAAGAAGTTATTCGACGAAATGACGACTATAGATTCGGTTTCTTGGAATGTTATGATTTCTGGGTATGTTAGGTGTCGGAGATTCGAGGATGCTATTAGTACATTTAGGGAAATGCAGCAATTGAGCAATGAGAAGCCTGGTGAAGCTACTGTAGTTAGCACTCTTTCTGCTTGTACAGCACTGAAAAATCTGCAGCTTGGGGAGGAAATTCACAACTATGTTAGAAAGGAGCTTGGTTTTACCACTATAATCAACAACGCATTGTTAGATATGTATGCAAAATGTGGGTGTTTAAATATTGCCCGCAATATATTTGATGAAATGCCTATGAAAAATGTAATTTGTTGGACTAGCATGATTTCTGGCTATATAAACTGTTGTGATTTAAGAGAGGCTAGAGACTTGTTCGATAGAAGTCCAGTTAGAGATGTTGTTTTGTGGACAGCTATGATAAATGGGTATGTGCAGTTCCACCAATTTGATGAAGCTGTGGCCCTGTTTCGAGAAATGCAAATTCGAAAGGTAAAACCTGATAAGTTCACAGTGGTCACTCTCCTCACAGGTTGTGCTCAGTTGGGAGCTCTAGAACAAGGGAAATGGATTCATGGATACCTAGATGAGAACAGAATAGCAATGGATGTTGTTGTTGGCACTGCACTCATTGAAATGTATTCCAAATGTGGATGTGTGGATAAATCATTAGAAATTTTCTATAAGTTAGAGGATAAGGACACGGCATCTTGGACGTCAATTATTTGTGGTCTCGCCATGAATGGTAAGACGGGCGATGCACTTAGGTTGTTCTCAGAAATGGAACTTGTGGGGGCTAAACCTGATGATATCACCTTCATTGGTGTTTTAAGTGCCTGTAGTCATGGTGGGTTGGTCAAGGAAGGACGTAGGTTTTTCAACTTGATGAAAAAGGTTTACCGAATCGAGCCGAAAGTAGAACACTATGGGTGTGTAATTGACCTCCTTGGTAGAGCTGGGCTGTTGAACGAAGCAGAGGAACTAATACAAGGGATTCCGAATGAAAATGGCGAAACTGTGGTTCCACTCTATGGTGCTTTGCTTAGTGCTTGCAGAATCCACAACAATGTTGACATTGGTGAAAGAGTAGCCAAAAAACTGGTTAACATTGAATCATGTGATTCTAGCATTCACACACTTCTTGCGAATATATACGCTTCCGTCGACAGGTGGGAAGATGCAAAGGAAGTGAGAAGGAAAATGAAGGAACTCGGAGTGAAGAAAATGCCCGGGTGTAGCTCGATCGAGGTTGATGGCATCGTTCACGAGTTTCTTGTTGGTGATCCATCTCATCCAGAAATGATAGAGATATGCTCCATGTTGGATAGAGTGGCTGGACAATTACTAGGATCAAAGGAATCTCAGCTTGAAAGAGTGATGCCACATTACAAGGACACTCAATACTGCAGTTTTGTAGAATTTTAA

mRNA sequence

ATGGATCAACTCAAACAAATTCAGAGTCAGATCTTTCGAATTGGTCTTGAAGGAGACCAAGACACAATAAACAAATTGATGGCATTCTGTGCAGACTCATCTCTTGGCAACTTGCACTATGCAGAGAGGATATTTGATTACATACAAGATCCATCCCTGTTTGTTTATAATGTGATGGTTAAAATGTATGCCAAAAGGCGAATTTTCAGAAAAGTCATTTTGCTATTTCAACAGTTGAGGGAAGATGAATTGTGGCCCGATAATTTTACTTACCCATTTGTTCTGAAAGCTATTGGTTGCTTAAGGGACGTGAGGCAAGGTGAAAAGGTTCATGGCTTTGTGGTGAAGACAGGAATGGATTTTGATAATTATGTTTGTAATTCACTTATGGATATGTATTCTGAATTGGACAATGTTGAGAATGCTAAGAAGTTATTCGACGAAATGACGACTATAGATTCGGTTTCTTGGAATGTTATGATTTCTGGGTATGTTAGGTGTCGGAGATTCGAGGATGCTATTAGTACATTTAGGGAAATGCAGCAATTGAGCAATGAGAAGCCTGGTGAAGCTACTGTAGTTAGCACTCTTTCTGCTTGTACAGCACTGAAAAATCTGCAGCTTGGGGAGGAAATTCACAACTATGTTAGAAAGGAGCTTGGTTTTACCACTATAATCAACAACGCATTGTTAGATATGTATGCAAAATGTGGGTGTTTAAATATTGCCCGCAATATATTTGATGAAATGCCTATGAAAAATGTAATTTGTTGGACTAGCATGATTTCTGGCTATATAAACTGTTGTGATTTAAGAGAGGCTAGAGACTTGTTCGATAGAAGTCCAGTTAGAGATGTTGTTTTGTGGACAGCTATGATAAATGGGTATGTGCAGTTCCACCAATTTGATGAAGCTGTGGCCCTGTTTCGAGAAATGCAAATTCGAAAGGTAAAACCTGATAAGTTCACAGTGGTCACTCTCCTCACAGGTTGTGCTCAGTTGGGAGCTCTAGAACAAGGGAAATGGATTCATGGATACCTAGATGAGAACAGAATAGCAATGGATGTTGTTGTTGGCACTGCACTCATTGAAATGTATTCCAAATGTGGATGTGTGGATAAATCATTAGAAATTTTCTATAAGTTAGAGGATAAGGACACGGCATCTTGGACGTCAATTATTTGTGGTCTCGCCATGAATGGTAAGACGGGCGATGCACTTAGGTTGTTCTCAGAAATGGAACTTGTGGGGGCTAAACCTGATGATATCACCTTCATTGGTGTTTTAAGTGCCTGTAGTCATGGTGGGTTGGTCAAGGAAGGACGTAGGTTTTTCAACTTGATGAAAAAGGTTTACCGAATCGAGCCGAAAGTAGAACACTATGGGTGTGTAATTGACCTCCTTGGTAGAGCTGGGCTGTTGAACGAAGCAGAGGAACTAATACAAGGGATTCCGAATGAAAATGGCGAAACTGTGGTTCCACTCTATGGTGCTTTGCTTAGTGCTTGCAGAATCCACAACAATGTTGACATTGGTGAAAGAGTAGCCAAAAAACTGGTTAACATTGAATCATGTGATTCTAGCATTCACACACTTCTTGCGAATATATACGCTTCCGTCGACAGGTGGGAAGATGCAAAGGAAGTGAGAAGGAAAATGAAGGAACTCGGAGTGAAGAAAATGCCCGGGTGTAGCTCGATCGAGGTTGATGGCATCGTTCACGAGTTTCTTGTTGGTGATCCATCTCATCCAGAAATGATAGAGATATGCTCCATGTTGGATAGAGTGGCTGGACAATTACTAGGATCAAAGGAATCTCAGCTTGAAAGAGTGATGCCACATTACAAGGACACTCAATACTGCAGTTTTGTAGAATTTTAA

Coding sequence (CDS)

ATGGATCAACTCAAACAAATTCAGAGTCAGATCTTTCGAATTGGTCTTGAAGGAGACCAAGACACAATAAACAAATTGATGGCATTCTGTGCAGACTCATCTCTTGGCAACTTGCACTATGCAGAGAGGATATTTGATTACATACAAGATCCATCCCTGTTTGTTTATAATGTGATGGTTAAAATGTATGCCAAAAGGCGAATTTTCAGAAAAGTCATTTTGCTATTTCAACAGTTGAGGGAAGATGAATTGTGGCCCGATAATTTTACTTACCCATTTGTTCTGAAAGCTATTGGTTGCTTAAGGGACGTGAGGCAAGGTGAAAAGGTTCATGGCTTTGTGGTGAAGACAGGAATGGATTTTGATAATTATGTTTGTAATTCACTTATGGATATGTATTCTGAATTGGACAATGTTGAGAATGCTAAGAAGTTATTCGACGAAATGACGACTATAGATTCGGTTTCTTGGAATGTTATGATTTCTGGGTATGTTAGGTGTCGGAGATTCGAGGATGCTATTAGTACATTTAGGGAAATGCAGCAATTGAGCAATGAGAAGCCTGGTGAAGCTACTGTAGTTAGCACTCTTTCTGCTTGTACAGCACTGAAAAATCTGCAGCTTGGGGAGGAAATTCACAACTATGTTAGAAAGGAGCTTGGTTTTACCACTATAATCAACAACGCATTGTTAGATATGTATGCAAAATGTGGGTGTTTAAATATTGCCCGCAATATATTTGATGAAATGCCTATGAAAAATGTAATTTGTTGGACTAGCATGATTTCTGGCTATATAAACTGTTGTGATTTAAGAGAGGCTAGAGACTTGTTCGATAGAAGTCCAGTTAGAGATGTTGTTTTGTGGACAGCTATGATAAATGGGTATGTGCAGTTCCACCAATTTGATGAAGCTGTGGCCCTGTTTCGAGAAATGCAAATTCGAAAGGTAAAACCTGATAAGTTCACAGTGGTCACTCTCCTCACAGGTTGTGCTCAGTTGGGAGCTCTAGAACAAGGGAAATGGATTCATGGATACCTAGATGAGAACAGAATAGCAATGGATGTTGTTGTTGGCACTGCACTCATTGAAATGTATTCCAAATGTGGATGTGTGGATAAATCATTAGAAATTTTCTATAAGTTAGAGGATAAGGACACGGCATCTTGGACGTCAATTATTTGTGGTCTCGCCATGAATGGTAAGACGGGCGATGCACTTAGGTTGTTCTCAGAAATGGAACTTGTGGGGGCTAAACCTGATGATATCACCTTCATTGGTGTTTTAAGTGCCTGTAGTCATGGTGGGTTGGTCAAGGAAGGACGTAGGTTTTTCAACTTGATGAAAAAGGTTTACCGAATCGAGCCGAAAGTAGAACACTATGGGTGTGTAATTGACCTCCTTGGTAGAGCTGGGCTGTTGAACGAAGCAGAGGAACTAATACAAGGGATTCCGAATGAAAATGGCGAAACTGTGGTTCCACTCTATGGTGCTTTGCTTAGTGCTTGCAGAATCCACAACAATGTTGACATTGGTGAAAGAGTAGCCAAAAAACTGGTTAACATTGAATCATGTGATTCTAGCATTCACACACTTCTTGCGAATATATACGCTTCCGTCGACAGGTGGGAAGATGCAAAGGAAGTGAGAAGGAAAATGAAGGAACTCGGAGTGAAGAAAATGCCCGGGTGTAGCTCGATCGAGGTTGATGGCATCGTTCACGAGTTTCTTGTTGGTGATCCATCTCATCCAGAAATGATAGAGATATGCTCCATGTTGGATAGAGTGGCTGGACAATTACTAGGATCAAAGGAATCTCAGCTTGAAAGAGTGATGCCACATTACAAGGACACTCAATACTGCAGTTTTGTAGAATTTTAA

Protein sequence

MDQLKQIQSQIFRIGLEGDQDTINKLMAFCADSSLGNLHYAERIFDYIQDPSLFVYNVMVKMYAKRRIFRKVILLFQQLREDELWPDNFTYPFVLKAIGCLRDVRQGEKVHGFVVKTGMDFDNYVCNSLMDMYSELDNVENAKKLFDEMTTIDSVSWNVMISGYVRCRRFEDAISTFREMQQLSNEKPGEATVVSTLSACTALKNLQLGEEIHNYVRKELGFTTIINNALLDMYAKCGCLNIARNIFDEMPMKNVICWTSMISGYINCCDLREARDLFDRSPVRDVVLWTAMINGYVQFHQFDEAVALFREMQIRKVKPDKFTVVTLLTGCAQLGALEQGKWIHGYLDENRIAMDVVVGTALIEMYSKCGCVDKSLEIFYKLEDKDTASWTSIICGLAMNGKTGDALRLFSEMELVGAKPDDITFIGVLSACSHGGLVKEGRRFFNLMKKVYRIEPKVEHYGCVIDLLGRAGLLNEAEELIQGIPNENGETVVPLYGALLSACRIHNNVDIGERVAKKLVNIESCDSSIHTLLANIYASVDRWEDAKEVRRKMKELGVKKMPGCSSIEVDGIVHEFLVGDPSHPEMIEICSMLDRVAGQLLGSKESQLERVMPHYKDTQYCSFVEF
Homology
[Close]
BLAST of Lsi06G009270 vs. ExPASy Swiss-Prot
Match: Q9C866 (Pentatricopeptide repeat-containing protein At1g31430 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E55 PE=2 SV=1)

HSP 1 Score: 681.4 bits (1757), Expect = 9.6e-195
Identity = 328/564 (58.16%), Postives = 426/564 (75.53%), Query Frame = 0 

Query: 48  IQDPSLFVYNVMVKMYAKRRIFRKVILLFQQLREDELWPDNFTYPFVLKAIGCLRDVRQG 107
           +Q PSL +YN M+K  A  + F KV+ LF +LR   L+PDNFT P VLK+IG LR V +G
Sbjct: 6   LQTPSLLMYNKMLKSLADGKSFTKVLALFGELRGQGLYPDNFTLPVVLKSIGRLRKVIEG 65

Query: 108 EKVHGFVVKTGMDFDNYVCNSLMDMYSELDNVENAKKLFDEMTTIDSVSWNVMISGYVRC 167
           EKVHG+ VK G++FD+YV NSLM MY+ L  +E   K+FDEM   D VSWN +IS YV  
Sbjct: 66  EKVHGYAVKAGLEFDSYVSNSLMGMYASLGKIEITHKVFDEMPQRDVVSWNGLISSYVGN 125

Query: 168 RRFEDAISTFREMQQLSNEKPGEATVVSTLSACTALKNLQLGEEIHNYVRKELGFTTIIN 227
            RFEDAI  F+ M Q SN K  E T+VSTLSAC+ALKNL++GE I+ +V  E   +  I 
Sbjct: 126 GRFEDAIGVFKRMSQESNLKFDEGTIVSTLSACSALKNLEIGERIYRFVVTEFEMSVRIG 185

Query: 228 NALLDMYAKCGCLNIARNIFDEMPMKNVICWTSMISGYINCCDLREARDLFDRSPVRDVV 287
           NAL+DM+ KCGCL+ AR +FD M  KNV CWTSM+ GY++   + EAR LF+RSPV+DVV
Sbjct: 186 NALVDMFCKCGCLDKARAVFDSMRDKNVKCWTSMVFGYVSTGRIDEARVLFERSPVKDVV 245

Query: 288 LWTAMINGYVQFHQFDEAVALFREMQIRKVKPDKFTVVTLLTGCAQLGALEQGKWIHGYL 347
           LWTAM+NGYVQF++FDEA+ LFR MQ   ++PD F +V+LLTGCAQ GALEQGKWIHGY+
Sbjct: 246 LWTAMMNGYVQFNRFDEALELFRCMQTAGIRPDNFVLVSLLTGCAQTGALEQGKWIHGYI 305

Query: 348 DENRIAMDVVVGTALIEMYSKCGCVDKSLEIFYKLEDKDTASWTSIICGLAMNGKTGDAL 407
           +ENR+ +D VVGTAL++MY+KCGC++ +LE+FY+++++DTASWTS+I GLAMNG +G AL
Sbjct: 306 NENRVTVDKVVGTALVDMYAKCGCIETALEVFYEIKERDTASWTSLIYGLAMNGMSGRAL 365

Query: 408 RLFSEMELVGAKPDDITFIGVLSACSHGGLVKEGRRFFNLMKKVYRIEPKVEHYGCVIDL 467
            L+ EME VG + D ITF+ VL+AC+HGG V EGR+ F+ M + + ++PK EH  C+IDL
Sbjct: 366 DLYYEMENVGVRLDAITFVAVLTACNHGGFVAEGRKIFHSMTERHNVQPKSEHCSCLIDL 425

Query: 468 LGRAGLLNEAEELIQGIPNENGETVVPLYGALLSACRIHNNVDIGERVAKKLVNIESCDS 527
           L RAGLL+EAEELI  +  E+ ET+VP+Y +LLSA R + NV I ERVA+KL  +E  DS
Sbjct: 426 LCRAGLLDEAEELIDKMRGESDETLVPVYCSLLSAARNYGNVKIAERVAEKLEKVEVSDS 485

Query: 528 SIHTLLANIYASVDRWEDAKEVRRKMKELGVKKMPGCSSIEVDGIVHEFLVGDP--SHPE 587
           S HTLLA++YAS +RWED   VRRKMK+LG++K PGCSSIE+DG+ HEF+VGD   SHP+
Sbjct: 486 SAHTLLASVYASANRWEDVTNVRRKMKDLGIRKFPGCSSIEIDGVGHEFIVGDDLLSHPK 545

Query: 588 MIEICSMLDRVAGQLLGSKESQLE 610
           M EI SML +    +L  +  +++
Sbjct: 546 MDEINSMLHQTTNLMLDLEHKEID 569

[Close]
BLAST of Lsi06G009270 vs. ExPASy Swiss-Prot
Match: Q9SJZ3 (Pentatricopeptide repeat-containing protein At2g22410, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-E28 PE=2 SV=1)

HSP 1 Score: 501.9 bits (1291), Expect = 1.0e-140
Identity = 248/594 (41.75%), Postives = 389/594 (65.49%), Query Frame = 0 

Query: 4   LKQIQSQIFRIGLEGDQDTINKLMAFCADSSLGNLHYAERIFDYIQDPSLFVYNVMVKMY 63
           LKQIQ+Q+   GL  D    ++L+AFCA S    L Y+ +I   I++P++F +NV ++ +
Sbjct: 69  LKQIQAQMIINGLILDPFASSRLIAFCALSESRYLDYSVKILKGIENPNIFSWNVTIRGF 128

Query: 64  AKRRIFRKVILLFQQLRED---ELWPDNFTYPFVLKAIGCLRDVRQGEKVHGFVVKTGMD 123
           ++    ++  LL++Q+      E  PD+FTYP + K    LR    G  + G V+K  ++
Sbjct: 129 SESENPKESFLLYKQMLRHGCCESRPDHFTYPVLFKVCADLRLSSLGHMILGHVLKLRLE 188

Query: 124 FDNYVCNSLMDMYSELDNVENAKKLFDEMTTIDSVSWNVMISGYVRCRRFEDAISTFREM 183
             ++V N+ + M++   ++ENA+K+FDE    D VSWN +I+GY +    E AI  ++ M
Sbjct: 189 LVSHVHNASIHMFASCGDMENARKVFDESPVRDLVSWNCLINGYKKIGEAEKAIYVYKLM 248

Query: 184 QQLSNEKPGEATVVSTLSACTALKNLQLGEEIHNYVRKE-LGFTTIINNALLDMYAKCGC 243
           +     KP + T++  +S+C+ L +L  G+E + YV++  L  T  + NAL+DM++KCG 
Sbjct: 249 ES-EGVKPDDVTMIGLVSSCSMLGDLNRGKEFYEYVKENGLRMTIPLVNALMDMFSKCGD 308

Query: 244 LNIARNIFDEMPMKNVICWTSMISGYINCCDLREARDLFDRSPVRDVVLWTAMINGYVQF 303
           ++ AR IFD +  + ++ WT+MISGY  C  L  +R LFD    +DVVLW AMI G VQ 
Sbjct: 309 IHEARRIFDNLEKRTIVSWTTMISGYARCGLLDVSRKLFDDMEEKDVVLWNAMIGGSVQA 368

Query: 304 HQFDEAVALFREMQIRKVKPDKFTVVTLLTGCAQLGALEQGKWIHGYLDENRIAMDVVVG 363
            +  +A+ALF+EMQ    KPD+ T++  L+ C+QLGAL+ G WIH Y+++  ++++V +G
Sbjct: 369 KRGQDALALFQEMQTSNTKPDEITMIHCLSACSQLGALDVGIWIHRYIEKYSLSLNVALG 428

Query: 364 TALIEMYSKCGCVDKSLEIFYKLEDKDTASWTSIICGLAMNGKTGDALRLFSEMELVGAK 423
           T+L++MY+KCG + ++L +F+ ++ +++ ++T+II GLA++G    A+  F+EM   G  
Sbjct: 429 TSLVDMYAKCGNISEALSVFHGIQTRNSLTYTAIIGGLALHGDASTAISYFNEMIDAGIA 488

Query: 424 PDDITFIGVLSACSHGGLVKEGRRFFNLMKKVYRIEPKVEHYGCVIDLLGRAGLLNEAEE 483
           PD+ITFIG+LSAC HGG+++ GR +F+ MK  + + P+++HY  ++DLLGRAGLL EA+ 
Sbjct: 489 PDEITFIGLLSACCHGGMIQTGRDYFSQMKSRFNLNPQLKHYSIMVDLLGRAGLLEEADR 548

Query: 484 LIQGIPNENGETVVPLYGALLSACRIHNNVDIGERVAKKLVNIESCDSSIHTLLANIYAS 543
           L++ +P E    V   +GALL  CR+H NV++GE+ AKKL+ ++  DS I+ LL  +Y  
Sbjct: 549 LMESMPMEADAAV---WGALLFGCRMHGNVELGEKAAKKLLELDPSDSGIYVLLDGMYGE 608

Query: 544 VDRWEDAKEVRRKMKELGVKKMPGCSSIEVDGIVHEFLVGDPSHPEMIEICSML 594
            + WEDAK  RR M E GV+K+PGCSSIEV+GIV EF+V D S PE  +I   L
Sbjct: 609 ANMWEDAKRARRMMNERGVEKIPGCSSIEVNGIVCEFIVRDKSRPESEKIYDRL 658

[Close]
BLAST of Lsi06G009270 vs. ExPASy Swiss-Prot
Match: Q9LSB8 (Putative pentatricopeptide repeat-containing protein At3g15930 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E51 PE=3 SV=2)

HSP 1 Score: 489.6 bits (1259), Expect = 5.4e-137
Identity = 247/600 (41.17%), Postives = 393/600 (65.50%), Query Frame = 0 

Query: 2   DQLKQIQSQIFRIGLEGDQDTINKLMAFCADSSLGNLHYAERIFDYIQDPSLFVYNVMVK 61
           DQ KQ+ SQ    G+  +     KL  F      G++ YA ++F  I +P + V+N M+K
Sbjct: 48  DQFKQLHSQSITRGVAPNPTFQKKLFVFWCSRLGGHVSYAYKLFVKIPEPDVVVWNNMIK 107

Query: 62  MYAKRRIFRKVILLFQQLREDELWPDNFTYPFVLKAIGCLRD---VRQGEKVHGFVVKTG 121
            ++K     + + L+  + ++ + PD+ T+PF+L   G  RD   +  G+K+H  VVK G
Sbjct: 108 GWSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFLLN--GLKRDGGALACGKKLHCHVVKFG 167

Query: 122 MDFDNYVCNSLMDMYSELDNVENAKKLFDEMTTIDSVSWNVMISGYVRCRRFEDAISTFR 181
           +  + YV N+L+ MYS    ++ A+ +FD     D  SWN+MISGY R + +E++I    
Sbjct: 168 LGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVFSWNLMISGYNRMKEYEESIELLV 227

Query: 182 EMQQLSNEKPGEATVVSTLSACTALKNLQLGEEIHNYVRK-ELGFTTIINNALLDMYAKC 241
           EM++ +   P   T++  LSAC+ +K+  L + +H YV + +   +  + NAL++ YA C
Sbjct: 228 EMER-NLVSPTSVTLLLVLSACSKVKDKDLCKRVHEYVSECKTEPSLRLENALVNAYAAC 287

Query: 242 GCLNIARNIFDEMPMKNVICWTSMISGYINCCDLREARDLFDRSPVRDVVLWTAMINGYV 301
           G ++IA  IF  M  ++VI WTS++ GY+   +L+ AR  FD+ PVRD + WT MI+GY+
Sbjct: 288 GEMDIAVRIFRSMKARDVISWTSIVKGYVERGNLKLARTYFDQMPVRDRISWTIMIDGYL 347

Query: 302 QFHQFDEAVALFREMQIRKVKPDKFTVVTLLTGCAQLGALEQGKWIHGYLDENRIAMDVV 361
           +   F+E++ +FREMQ   + PD+FT+V++LT CA LG+LE G+WI  Y+D+N+I  DVV
Sbjct: 348 RAGCFNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGSLEIGEWIKTYIDKNKIKNDVV 407

Query: 362 VGTALIEMYSKCGCVDKSLEIFYKLEDKDTASWTSIICGLAMNGKTGDALRLFSEMELVG 421
           VG ALI+MY KCGC +K+ ++F+ ++ +D  +WT+++ GLA NG+  +A+++F +M+ + 
Sbjct: 408 VGNALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAMVVGLANNGQGQEAIKVFFQMQDMS 467

Query: 422 AKPDDITFIGVLSACSHGGLVKEGRRFFNLMKKVYRIEPKVEHYGCVIDLLGRAGLLNEA 481
            +PDDIT++GVLSAC+H G+V + R+FF  M+  +RIEP + HYGC++D+LGRAGL+ EA
Sbjct: 468 IQPDDITYLGVLSACNHSGMVDQARKFFAKMRSDHRIEPSLVHYGCMVDMLGRAGLVKEA 527

Query: 482 EELIQGIPNENGETVVPLYGALLSACRIHNNVDIGERVAKKLVNIESCDSSIHTLLANIY 541
            E+++ +P  N  ++V  +GALL A R+HN+  + E  AKK++ +E  + +++ LL NIY
Sbjct: 528 YEILRKMP-MNPNSIV--WGALLGASRLHNDEPMAELAAKKILELEPDNGAVYALLCNIY 587

Query: 542 ASVDRWEDAKEVRRKMKELGVKKMPGCSSIEVDGIVHEFLVGDPSHPEMIEICSMLDRVA 598
           A   RW+D +EVRRK+ ++ +KK PG S IEV+G  HEF+ GD SH +  EI   L+ +A
Sbjct: 588 AGCKRWKDLREVRRKIVDVAIKKTPGFSLIEVNGFAHEFVAGDKSHLQSEEIYMKLEELA 641

[Close]
BLAST of Lsi06G009270 vs. ExPASy Swiss-Prot
Match: O82380 (Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-H33 PE=2 SV=1)

HSP 1 Score: 464.2 bits (1193), Expect = 2.4e-129
Identity = 226/601 (37.60%), Postives = 368/601 (61.23%), Query Frame = 0 

Query: 3   QLKQIQSQIFRIGLEGDQDTINKLMAFCADSSLGNLHYAERIFDYIQDPSLFVYNVMVKM 62
           QLKQ    + R G   D  + +KL A  A SS  +L YA ++FD I  P+ F +N +++ 
Sbjct: 45  QLKQTHGHMIRTGTFSDPYSASKLFAMAALSSFASLEYARKVFDEIPKPNSFAWNTLIRA 104

Query: 63  YAK-RRIFRKVILLFQQLREDELWPDNFTYPFVLKAIGCLRDVRQGEKVHGFVVKTGMDF 122
           YA        +      + E + +P+ +T+PF++KA   +  +  G+ +HG  VK+ +  
Sbjct: 105 YASGPDPVLSIWAFLDMVSESQCYPNKYTFPFLIKAAAEVSSLSLGQSLHGMAVKSAVGS 164

Query: 123 DNYVCNSLMDMYSELDNVENAKKLFDEMTTIDSVSWNVMISGYVRCRRFEDAISTFREMQ 182
           D +V NSL+  Y    ++++A K+F  +   D VSWN MI+G+V+    + A+  F++M+
Sbjct: 165 DVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKME 224

Query: 183 QLSNEKPGEATVVSTLSACTALKNLQLGEEIHNYVRK-ELGFTTIINNALLDMYAKCGCL 242
              + K    T+V  LSAC  ++NL+ G ++ +Y+ +  +     + NA+LDMY KCG +
Sbjct: 225 S-EDVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEENRVNVNLTLANAMLDMYTKCGSI 284

Query: 243 NIARNIFDEMPMKNVICWTSMISGYINCCDLREARDLFDRSPVRDVVLWTAMINGYVQFH 302
             A+ +FD M  K+ + WT+M+ GY    D   AR++ +  P +D+V W A+I+ Y Q  
Sbjct: 285 EDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQNG 344

Query: 303 QFDEAVALFREMQIRK-VKPDKFTVVTLLTGCAQLGALEQGKWIHGYLDENRIAMDVVVG 362
           + +EA+ +F E+Q++K +K ++ T+V+ L+ CAQ+GALE G+WIH Y+ ++ I M+  V 
Sbjct: 345 KPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGRWIHSYIKKHGIRMNFHVT 404

Query: 363 TALIEMYSKCGCVDKSLEIFYKLEDKDTASWTSIICGLAMNGKTGDALRLFSEMELVGAK 422
           +ALI MYSKCG ++KS E+F  +E +D   W+++I GLAM+G   +A+ +F +M+    K
Sbjct: 405 SALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVK 464

Query: 423 PDDITFIGVLSACSHGGLVKEGRRFFNLMKKVYRIEPKVEHYGCVIDLLGRAGLLNEAEE 482
           P+ +TF  V  ACSH GLV E    F+ M+  Y I P+ +HY C++D+LGR+G L +A +
Sbjct: 465 PNGVTFTNVFCACSHTGLVDEAESLFHQMESNYGIVPEEKHYACIVDVLGRSGYLEKAVK 524

Query: 483 LIQGIPNENGETVVPLYGALLSACRIHNNVDIGERVAKKLVNIESCDSSIHTLLANIYAS 542
            I+ +P     +V   +GALL AC+IH N+++ E    +L+ +E  +   H LL+NIYA 
Sbjct: 525 FIEAMPIPPSTSV---WGALLGACKIHANLNLAEMACTRLLELEPRNDGAHVLLSNIYAK 584

Query: 543 VDRWEDAKEVRRKMKELGVKKMPGCSSIEVDGIVHEFLVGDPSHPEMIEICSMLDRVAGQ 601
           + +WE+  E+R+ M+  G+KK PGCSSIE+DG++HEFL GD +HP   ++   L  V  +
Sbjct: 585 LGKWENVSELRKHMRVTGLKKEPGCSSIEIDGMIHEFLSGDNAHPMSEKVYGKLHEVMEK 641

[Close]
BLAST of Lsi06G009270 vs. ExPASy Swiss-Prot
Match: Q9LUJ2 (Pentatricopeptide repeat-containing protein At3g22690 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H56 PE=3 SV=1)

HSP 1 Score: 435.6 bits (1119), Expect = 9.2e-121
Identity = 223/596 (37.42%), Postives = 363/596 (60.91%), Query Frame = 0 

Query: 6   QIQSQIFRIGLEGDQDTINKLMAFCADSSLGNLHYAERIFDYIQDPSLFVYNVMVKMYAK 65
           QI   I ++G   D    N L+ F A+   G L  A ++FD + + ++  +  M+  YA+
Sbjct: 155 QIHGLIVKMGYAKDLFVQNSLVHFYAE--CGELDSARKVFDEMSERNVVSWTSMICGYAR 214

Query: 66  RRIFRKVI-LLFQQLREDELWPDNFTYPFVLKAIGCLRDVRQGEKVHGFVVKTGMDFDNY 125
           R   +  + L F+ +R++E+ P++ T   V+ A   L D+  GEKV+ F+  +G++ ++ 
Sbjct: 215 RDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDL 274

Query: 126 VCNSLMDMYSELDNVENAKKLFDEMTTIDSVSWNVMISGYVRCRRFEDAISTFREMQQLS 185
           + ++L+DMY + + ++ AK+LFDE    +    N M S YVR     +A+  F  M   S
Sbjct: 275 MVSALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMD-S 334

Query: 186 NEKPGEATVVSTLSACTALKNLQLGEEIHNYVRKELGFTTIIN--NALLDMYAKCGCLNI 245
             +P   +++S +S+C+ L+N+  G+  H YV +  GF +  N  NAL+DMY KC   + 
Sbjct: 335 GVRPDRISMLSAISSCSQLRNILWGKSCHGYVLRN-GFESWDNICNALIDMYMKCHRQDT 394

Query: 246 ARNIFDEMPMKNVICWTSMISGYINCCDLREARDLFDRSPVRDVVLWTAMINGYVQFHQF 305
           A  IFD M  K V+ W S+++GY+   ++  A + F+  P +++V W  +I+G VQ   F
Sbjct: 395 AFRIFDRMSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLF 454

Query: 306 DEAVALFREMQIRK-VKPDKFTVVTLLTGCAQLGALEQGKWIHGYLDENRIAMDVVVGTA 365
           +EA+ +F  MQ ++ V  D  T++++ + C  LGAL+  KWI+ Y+++N I +DV +GT 
Sbjct: 455 EEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYYYIEKNGIQLDVRLGTT 514

Query: 366 LIEMYSKCGCVDKSLEIFYKLEDKDTASWTSIICGLAMNGKTGDALRLFSEMELVGAKPD 425
           L++M+S+CG  + ++ IF  L ++D ++WT+ I  +AM G    A+ LF +M   G KPD
Sbjct: 515 LVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNAERAIELFDDMIEQGLKPD 574

Query: 426 DITFIGVLSACSHGGLVKEGRRFFNLMKKVYRIEPKVEHYGCVIDLLGRAGLLNEAEELI 485
            + F+G L+ACSHGGLV++G+  F  M K++ + P+  HYGC++DLLGRAGLL EA +LI
Sbjct: 575 GVAFVGALTACSHGGLVQQGKEIFYSMLKLHGVSPEDVHYGCMVDLLGRAGLLEEAVQLI 634

Query: 486 QGIPNENGETVVPLYGALLSACRIHNNVDIGERVAKKLVNIESCDSSIHTLLANIYASVD 545
           + +P E  + +   + +LL+ACR+  NV++    A+K+  +    +  + LL+N+YAS  
Sbjct: 635 EDMPMEPNDVI---WNSLLAACRVQGNVEMAAYAAEKIQVLAPERTGSYVLLSNVYASAG 694

Query: 546 RWEDAKEVRRKMKELGVKKMPGCSSIEVDGIVHEFLVGDPSHPEMIEICSMLDRVA 598
           RW D  +VR  MKE G++K PG SSI++ G  HEF  GD SHPEM  I +MLD V+
Sbjct: 695 RWNDMAKVRLSMKEKGLRKPPGTSSIQIRGKTHEFTSGDESHPEMPNIEAMLDEVS 743

[Close]
BLAST of Lsi06G009270 vs. ExPASy TrEMBL
Match: A0A0A0LWP8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G418260 PE=4 SV=1)

HSP 1 Score: 1158.3 bits (2995), Expect = 0.0e+00
Identity = 565/625 (90.40%), Postives = 593/625 (94.88%), Query Frame = 0 

Query: 1   MDQLKQIQSQIFRIGLEGDQDTINKLMAFCADSSLGNLHYAERIFDYIQDPSLFVYNVMV 60
           MDQLKQIQSQIFRIGLEGD+DTINKLMAFCADSSLGNL YAE+IF+Y+QDPSLFVYNVMV
Sbjct: 186 MDQLKQIQSQIFRIGLEGDRDTINKLMAFCADSSLGNLRYAEKIFNYVQDPSLFVYNVMV 245

Query: 61  KMYAKRRIFRKVILLFQQLREDELWPDNFTYPFVLKAIGCLRDVRQGEKVHGFVVKTGMD 120
           KMYAKR I RKV+LLFQQLRED LWPD FTYPFVLKAIGCLRDVRQGEKV GF+VKTGMD
Sbjct: 246 KMYAKRGILRKVLLLFQQLREDGLWPDGFTYPFVLKAIGCLRDVRQGEKVRGFIVKTGMD 305

Query: 121 FDNYVCNSLMDMYSELDNVENAKKLFDEMTTIDSVSWNVMISGYVRCRRFEDAISTFREM 180
            DNYV NSL+DMY EL NVENAKKLFDEMTT DSVSWNVMISGYVRCRRFEDAI+TFREM
Sbjct: 306 LDNYVYNSLIDMYYELSNVENAKKLFDEMTTRDSVSWNVMISGYVRCRRFEDAINTFREM 365

Query: 181 QQLSNEKPGEATVVSTLSACTALKNLQLGEEIHNYVRKELGFTTIINNALLDMYAKCGCL 240
           QQ  NEKP EATVVSTLSACTALKNL+LG+EIHNYVRKELGFTT I+NALLDMYAKCGCL
Sbjct: 366 QQEGNEKPDEATVVSTLSACTALKNLELGDEIHNYVRKELGFTTRIDNALLDMYAKCGCL 425

Query: 241 NIARNIFDEMPMKNVICWTSMISGYINCCDLREARDLFDRSPVRDVVLWTAMINGYVQFH 300
           NIARNIFDEM MKNVICWTSMISGYINC DLREARDLFD+SPVRDVVLWTAMINGYVQFH
Sbjct: 426 NIARNIFDEMSMKNVICWTSMISGYINCGDLREARDLFDKSPVRDVVLWTAMINGYVQFH 485

Query: 301 QFDEAVALFREMQIRKVKPDKFTVVTLLTGCAQLGALEQGKWIHGYLDENRIAMDVVVGT 360
            FD+AVALFREMQI++VKPDKFTVVTLLTGCAQLGALEQGKWIHGYLDENRI MDVVVGT
Sbjct: 486 HFDDAVALFREMQIQRVKPDKFTVVTLLTGCAQLGALEQGKWIHGYLDENRITMDVVVGT 545

Query: 361 ALIEMYSKCGCVDKSLEIFYKLEDKDTASWTSIICGLAMNGKTGDALRLFSEMELVGAKP 420
           ALIEMYSKCGCVDKSLEIFY+LEDKDTASWTSIICGLAMNGKT +ALRLFSEME VGAKP
Sbjct: 546 ALIEMYSKCGCVDKSLEIFYELEDKDTASWTSIICGLAMNGKTSEALRLFSEMERVGAKP 605

Query: 421 DDITFIGVLSACSHGGLVKEGRRFFNLMKKVYRIEPKVEHYGCVIDLLGRAGLLNEAEEL 480
           DDITFIGVLSACSHGGLV+EGRRFFN MKKV+RIEPKVEHYGCVIDLLGRAGLL+EAEEL
Sbjct: 606 DDITFIGVLSACSHGGLVEEGRRFFNSMKKVHRIEPKVEHYGCVIDLLGRAGLLDEAEEL 665

Query: 481 IQGIPNENGETVVPLYGALLSACRIHNNVDIGERVAKKLVNIESCDSSIHTLLANIYASV 540
           IQ IP EN E VVPLYGALLSACRIHNNVD+GER+AKKL NIESCDSSIHTLLANIYASV
Sbjct: 666 IQEIPIENCEIVVPLYGALLSACRIHNNVDMGERLAKKLENIESCDSSIHTLLANIYASV 725

Query: 541 DRWEDAKEVRRKMKELGVKKMPGCSSIEVDGIVHEFLVGDPSHPEMIEICSMLDRVAGQL 600
           DRWEDAK+VRRKMKELGVKKMPGCS IEVDGIVHEFLVGDPSHPEM+EICSML+RV GQL
Sbjct: 726 DRWEDAKKVRRKMKELGVKKMPGCSLIEVDGIVHEFLVGDPSHPEMMEICSMLNRVTGQL 785

Query: 601 LGSKESQLERVMPHYKDTQYCSFVE 626
           LG KESQ+E VMP YKDTQ+C+FVE
Sbjct: 786 LGLKESQVESVMPLYKDTQHCNFVE 810

[Close]
BLAST of Lsi06G009270 vs. ExPASy TrEMBL
Match: A0A1S3CPD2 (pentatricopeptide repeat-containing protein At1g31430 OS=Cucumis melo OX=3656 GN=LOC103502722 PE=4 SV=1)

HSP 1 Score: 1130.2 bits (2922), Expect = 0.0e+00
Identity = 554/625 (88.64%), Postives = 585/625 (93.60%), Query Frame = 0 

Query: 1   MDQLKQIQSQIFRIGLEGDQDTINKLMAFCADSSLGNLHYAERIFDYIQDPSLFVYNVMV 60
           M+QLK+IQSQIFRIGLEGD+D INKLMAFCAD SLGNL YAE+IFDY+QDPSLFVYNVMV
Sbjct: 48  MEQLKRIQSQIFRIGLEGDRDIINKLMAFCADLSLGNLRYAEKIFDYVQDPSLFVYNVMV 107

Query: 61  KMYAKRRIFRKVILLFQQLREDELWPDNFTYPFVLKAIGCLRDVRQGEKVHGFVVKTGMD 120
           KMYAKR + RKV+LLFQQLRED+LWPDNFTYPFVLKAIGCLRDV QGEK+HGFVVKTGM+
Sbjct: 108 KMYAKRGLLRKVLLLFQQLREDQLWPDNFTYPFVLKAIGCLRDVGQGEKLHGFVVKTGMN 167

Query: 121 FDNYVCNSLMDMYSELDNVENAKKLFDEMTTIDSVSWNVMISGYVRCRRFEDAISTFREM 180
            DNYVCNSLMDMYSEL NVENAKKLFDEMTT DSVSWNVMISGYV CRRFEDAI+TFREM
Sbjct: 168 LDNYVCNSLMDMYSELGNVENAKKLFDEMTTRDSVSWNVMISGYVGCRRFEDAINTFREM 227

Query: 181 QQLSNEKPGEATVVSTLSACTALKNLQLGEEIHNYVRKELGFTTIINNALLDMYAKCGCL 240
           QQ  NEKP EATVVSTLSACTALKNL+LG+EIHNYVRKELGFT  I+NALLDMYAKCGCL
Sbjct: 228 QQEGNEKPDEATVVSTLSACTALKNLELGDEIHNYVRKELGFTPRIDNALLDMYAKCGCL 287

Query: 241 NIARNIFDEMPMKNVICWTSMISGYINCCDLREARDLFDRSPVRDVVLWTAMINGYVQFH 300
           NI+RNIFDEMPMKNVICWTSMISGYINC DLREARDLFD+SPVRDVVLWTAMINGYVQFH
Sbjct: 288 NISRNIFDEMPMKNVICWTSMISGYINCGDLREARDLFDKSPVRDVVLWTAMINGYVQFH 347

Query: 301 QFDEAVALFREMQIRKVKPDKFTVVTLLTGCAQLGALEQGKWIHGYLDENRIAMDVVVGT 360
            FD+AVALFREMQI+KVKPDKFTVVTLLTGCAQLGALEQGKWIHGYLDENRI +DVVVGT
Sbjct: 348 HFDDAVALFREMQIQKVKPDKFTVVTLLTGCAQLGALEQGKWIHGYLDENRITIDVVVGT 407

Query: 361 ALIEMYSKCGCVDKSLEIFYKLEDKDTASWTSIICGLAMNGKTGDALRLFSEMELVGAKP 420
           ALIEMYSKCGCVDKSLEIFY+LEDKDTASWTSIICGLAMNGKT +ALRLFSEMELVGAKP
Sbjct: 408 ALIEMYSKCGCVDKSLEIFYELEDKDTASWTSIICGLAMNGKTSEALRLFSEMELVGAKP 467

Query: 421 DDITFIGVLSACSHGGLVKEGRRFFNLMKKVYRIEPKVEHYGCVIDLLGRAGLLNEAEEL 480
           DDITFIGVLSACSHGGLV+EGRRFFN MKKVYRIEPKVEHYGCV+DLLGRAGLL+EAEEL
Sbjct: 468 DDITFIGVLSACSHGGLVEEGRRFFNSMKKVYRIEPKVEHYGCVVDLLGRAGLLDEAEEL 527

Query: 481 IQGIPNENGETVVPLYGALLSACRIHNNVDIGERVAKKLVNIESCDSSIHTLLANIYASV 540
           IQ I  EN E VV LYGALLSACRIHNNVD+GER+AKKLVNIE CDSSIH LLANIYAS 
Sbjct: 528 IQEISIENCEIVVSLYGALLSACRIHNNVDMGERLAKKLVNIEPCDSSIHALLANIYASA 587

Query: 541 DRWEDAKEVRRKMKELGVKKMPGCSSIEVDGIVHEFLVGDPSHPEMIEICSMLDRVAGQL 600
           DRWEDAK+VRRKMKELGVKKMPGCSSIEVDGIVHEFLVGDPSHPE IEI SML+RV+ QL
Sbjct: 588 DRWEDAKKVRRKMKELGVKKMPGCSSIEVDGIVHEFLVGDPSHPETIEIRSMLNRVSRQL 647

Query: 601 LGSKESQLERVMPHYKDTQYCSFVE 626
           LG KESQL   M    DTQ+C+FVE
Sbjct: 648 LGLKESQL---MSFDNDTQHCNFVE 669

[Close]
BLAST of Lsi06G009270 vs. ExPASy TrEMBL
Match: A0A5A7TXP7 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold216G00060 PE=4 SV=1)

HSP 1 Score: 1130.2 bits (2922), Expect = 0.0e+00
Identity = 554/625 (88.64%), Postives = 585/625 (93.60%), Query Frame = 0 

Query: 1   MDQLKQIQSQIFRIGLEGDQDTINKLMAFCADSSLGNLHYAERIFDYIQDPSLFVYNVMV 60
           M+QLK+IQSQIFRIGLEGD+D INKLMAFCAD SLGNL YAE+IFDY+QDPSLFVYNVMV
Sbjct: 105 MEQLKRIQSQIFRIGLEGDRDIINKLMAFCADLSLGNLRYAEKIFDYVQDPSLFVYNVMV 164

Query: 61  KMYAKRRIFRKVILLFQQLREDELWPDNFTYPFVLKAIGCLRDVRQGEKVHGFVVKTGMD 120
           KMYAKR + RKV+LLFQQLRED+LWPDNFTYPFVLKAIGCLRDV QGEK+HGFVVKTGM+
Sbjct: 165 KMYAKRGLLRKVLLLFQQLREDQLWPDNFTYPFVLKAIGCLRDVGQGEKLHGFVVKTGMN 224

Query: 121 FDNYVCNSLMDMYSELDNVENAKKLFDEMTTIDSVSWNVMISGYVRCRRFEDAISTFREM 180
            DNYVCNSLMDMYSEL NVENAKKLFDEMTT DSVSWNVMISGYV CRRFEDAI+TFREM
Sbjct: 225 LDNYVCNSLMDMYSELGNVENAKKLFDEMTTRDSVSWNVMISGYVGCRRFEDAINTFREM 284

Query: 181 QQLSNEKPGEATVVSTLSACTALKNLQLGEEIHNYVRKELGFTTIINNALLDMYAKCGCL 240
           QQ  NEKP EATVVSTLSACTALKNL+LG+EIHNYVRKELGFT  I+NALLDMYAKCGCL
Sbjct: 285 QQEGNEKPDEATVVSTLSACTALKNLELGDEIHNYVRKELGFTPRIDNALLDMYAKCGCL 344

Query: 241 NIARNIFDEMPMKNVICWTSMISGYINCCDLREARDLFDRSPVRDVVLWTAMINGYVQFH 300
           NI+RNIFDEMPMKNVICWTSMISGYINC DLREARDLFD+SPVRDVVLWTAMINGYVQFH
Sbjct: 345 NISRNIFDEMPMKNVICWTSMISGYINCGDLREARDLFDKSPVRDVVLWTAMINGYVQFH 404

Query: 301 QFDEAVALFREMQIRKVKPDKFTVVTLLTGCAQLGALEQGKWIHGYLDENRIAMDVVVGT 360
            FD+AVALFREMQI+KVKPDKFTVVTLLTGCAQLGALEQGKWIHGYLDENRI +DVVVGT
Sbjct: 405 HFDDAVALFREMQIQKVKPDKFTVVTLLTGCAQLGALEQGKWIHGYLDENRITIDVVVGT 464

Query: 361 ALIEMYSKCGCVDKSLEIFYKLEDKDTASWTSIICGLAMNGKTGDALRLFSEMELVGAKP 420
           ALIEMYSKCGCVDKSLEIFY+LEDKDTASWTSIICGLAMNGKT +ALRLFSEMELVGAKP
Sbjct: 465 ALIEMYSKCGCVDKSLEIFYELEDKDTASWTSIICGLAMNGKTSEALRLFSEMELVGAKP 524

Query: 421 DDITFIGVLSACSHGGLVKEGRRFFNLMKKVYRIEPKVEHYGCVIDLLGRAGLLNEAEEL 480
           DDITFIGVLSACSHGGLV+EGRRFFN MKKVYRIEPKVEHYGCV+DLLGRAGLL+EAEEL
Sbjct: 525 DDITFIGVLSACSHGGLVEEGRRFFNSMKKVYRIEPKVEHYGCVVDLLGRAGLLDEAEEL 584

Query: 481 IQGIPNENGETVVPLYGALLSACRIHNNVDIGERVAKKLVNIESCDSSIHTLLANIYASV 540
           IQ I  EN E VV LYGALLSACRIHNNVD+GER+AKKLVNIE CDSSIH LLANIYAS 
Sbjct: 585 IQEISIENCEIVVSLYGALLSACRIHNNVDMGERLAKKLVNIEPCDSSIHALLANIYASA 644

Query: 541 DRWEDAKEVRRKMKELGVKKMPGCSSIEVDGIVHEFLVGDPSHPEMIEICSMLDRVAGQL 600
           DRWEDAK+VRRKMKELGVKKMPGCSSIEVDGIVHEFLVGDPSHPE IEI SML+RV+ QL
Sbjct: 645 DRWEDAKKVRRKMKELGVKKMPGCSSIEVDGIVHEFLVGDPSHPETIEIRSMLNRVSRQL 704

Query: 601 LGSKESQLERVMPHYKDTQYCSFVE 626
           LG KESQL   M    DTQ+C+FVE
Sbjct: 705 LGLKESQL---MSFDNDTQHCNFVE 726

[Close]
BLAST of Lsi06G009270 vs. ExPASy TrEMBL
Match: A0A5D3CSK6 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold15G00190 PE=3 SV=1)

HSP 1 Score: 1130.2 bits (2922), Expect = 0.0e+00
Identity = 554/625 (88.64%), Postives = 585/625 (93.60%), Query Frame = 0 

Query: 1   MDQLKQIQSQIFRIGLEGDQDTINKLMAFCADSSLGNLHYAERIFDYIQDPSLFVYNVMV 60
           M+QLK+IQSQIFRIGLEGD+D INKLMAFCAD SLGNL YAE+IFDY+QDPSLFVYNVMV
Sbjct: 210 MEQLKRIQSQIFRIGLEGDRDIINKLMAFCADLSLGNLRYAEKIFDYVQDPSLFVYNVMV 269

Query: 61  KMYAKRRIFRKVILLFQQLREDELWPDNFTYPFVLKAIGCLRDVRQGEKVHGFVVKTGMD 120
           KMYAKR + RKV+LLFQQLRED+LWPDNFTYPFVLKAIGCLRDV QGEK+HGFVVKTGM+
Sbjct: 270 KMYAKRGLLRKVLLLFQQLREDQLWPDNFTYPFVLKAIGCLRDVGQGEKLHGFVVKTGMN 329

Query: 121 FDNYVCNSLMDMYSELDNVENAKKLFDEMTTIDSVSWNVMISGYVRCRRFEDAISTFREM 180
            DNYVCNSLMDMYSEL NVENAKKLFDEMTT DSVSWNVMISGYV CRRFEDAI+TFREM
Sbjct: 330 LDNYVCNSLMDMYSELGNVENAKKLFDEMTTRDSVSWNVMISGYVGCRRFEDAINTFREM 389

Query: 181 QQLSNEKPGEATVVSTLSACTALKNLQLGEEIHNYVRKELGFTTIINNALLDMYAKCGCL 240
           QQ  NEKP EATVVSTLSACTALKNL+LG+EIHNYVRKELGFT  I+NALLDMYAKCGCL
Sbjct: 390 QQEGNEKPDEATVVSTLSACTALKNLELGDEIHNYVRKELGFTPRIDNALLDMYAKCGCL 449

Query: 241 NIARNIFDEMPMKNVICWTSMISGYINCCDLREARDLFDRSPVRDVVLWTAMINGYVQFH 300
           NI+RNIFDEMPMKNVICWTSMISGYINC DLREARDLFD+SPVRDVVLWTAMINGYVQFH
Sbjct: 450 NISRNIFDEMPMKNVICWTSMISGYINCGDLREARDLFDKSPVRDVVLWTAMINGYVQFH 509

Query: 301 QFDEAVALFREMQIRKVKPDKFTVVTLLTGCAQLGALEQGKWIHGYLDENRIAMDVVVGT 360
            FD+AVALFREMQI+KVKPDKFTVVTLLTGCAQLGALEQGKWIHGYLDENRI +DVVVGT
Sbjct: 510 HFDDAVALFREMQIQKVKPDKFTVVTLLTGCAQLGALEQGKWIHGYLDENRITIDVVVGT 569

Query: 361 ALIEMYSKCGCVDKSLEIFYKLEDKDTASWTSIICGLAMNGKTGDALRLFSEMELVGAKP 420
           ALIEMYSKCGCVDKSLEIFY+LEDKDTASWTSIICGLAMNGKT +ALRLFSEMELVGAKP
Sbjct: 570 ALIEMYSKCGCVDKSLEIFYELEDKDTASWTSIICGLAMNGKTSEALRLFSEMELVGAKP 629

Query: 421 DDITFIGVLSACSHGGLVKEGRRFFNLMKKVYRIEPKVEHYGCVIDLLGRAGLLNEAEEL 480
           DDITFIGVLSACSHGGLV+EGRRFFN MKKVYRIEPKVEHYGCV+DLLGRAGLL+EAEEL
Sbjct: 630 DDITFIGVLSACSHGGLVEEGRRFFNSMKKVYRIEPKVEHYGCVVDLLGRAGLLDEAEEL 689

Query: 481 IQGIPNENGETVVPLYGALLSACRIHNNVDIGERVAKKLVNIESCDSSIHTLLANIYASV 540
           IQ I  EN E VV LYGALLSACRIHNNVD+GER+AKKLVNIE CDSSIH LLANIYAS 
Sbjct: 690 IQEISIENCEIVVSLYGALLSACRIHNNVDMGERLAKKLVNIEPCDSSIHALLANIYASA 749

Query: 541 DRWEDAKEVRRKMKELGVKKMPGCSSIEVDGIVHEFLVGDPSHPEMIEICSMLDRVAGQL 600
           DRWEDAK+VRRKMKELGVKKMPGCSSIEVDGIVHEFLVGDPSHPE IEI SML+RV+ QL
Sbjct: 750 DRWEDAKKVRRKMKELGVKKMPGCSSIEVDGIVHEFLVGDPSHPETIEIRSMLNRVSRQL 809

Query: 601 LGSKESQLERVMPHYKDTQYCSFVE 626
           LG KESQL   M    DTQ+C+FVE
Sbjct: 810 LGLKESQL---MSFDNDTQHCNFVE 831

[Close]
BLAST of Lsi06G009270 vs. ExPASy TrEMBL
Match: A0A6J1CTE5 (pentatricopeptide repeat-containing protein At1g31430 OS=Momordica charantia OX=3673 GN=LOC111014415 PE=4 SV=1)

HSP 1 Score: 1120.5 bits (2897), Expect = 0.0e+00
Identity = 545/628 (86.78%), Postives = 583/628 (92.83%), Query Frame = 0 

Query: 1   MDQLKQIQSQIFRIGLEGDQDTINKLMAFCADSSLGNLHYAERIFDYIQDPSLFVYNVMV 60
           MDQ KQIQ+ IFRIGLE D+DT+NK MAFCAD SLGNL YAER+FDYIQ+P LFVYNVMV
Sbjct: 48  MDQFKQIQTHIFRIGLEQDRDTLNKSMAFCADPSLGNLRYAERVFDYIQEPCLFVYNVMV 107

Query: 61  KMYAKRRIFRKVILLFQQLREDELWPDNFTYPFVLKAIGCLRDVRQGEKVHGFVVKTGMD 120
           K YAKR IFRKVILLFQ+L+ED LWPDNFTYPFVLKAIGCLRD+  GEK+HGFVVKTGMD
Sbjct: 108 KAYAKRGIFRKVILLFQRLKEDGLWPDNFTYPFVLKAIGCLRDLCHGEKIHGFVVKTGMD 167

Query: 121 FDNYVCNSLMDMYSELDNVENAKKLFDEMTTIDSVSWNVMISGYVRCRRFEDAISTFREM 180
           FDNYVCNSLMDMY+EL  +E A+KLFDEM T DSVSWNV+ISGYVRCRRFEDAI+TF+EM
Sbjct: 168 FDNYVCNSLMDMYAELGKIEYAEKLFDEMHTKDSVSWNVLISGYVRCRRFEDAINTFKEM 227

Query: 181 QQLSNEKPGEATVVSTLSACTALKNLQLGEEIHNYVRKELGFTTIINNALLDMYAKCGCL 240
           Q+ SN KPGEA +VSTLSACTALKNL+LGEEIHNYVR ELGFTTIINNALLDMYAKCG L
Sbjct: 228 QRESNVKPGEAGIVSTLSACTALKNLELGEEIHNYVRNELGFTTIINNALLDMYAKCGRL 287

Query: 241 NIARNIFDEMPMKNVICWTSMISGYINCCDLREARDLFDRSPVRDVVLWTAMINGYVQFH 300
           NIAR +FDEMPMKNVICWTSMISGYINC DL+EARDLFD SPVRDVVLWTAMINGYVQF+
Sbjct: 288 NIARKVFDEMPMKNVICWTSMISGYINCGDLKEARDLFDISPVRDVVLWTAMINGYVQFN 347

Query: 301 QFDEAVALFREMQIRKVKPDKFTVVTLLTGCAQLGALEQGKWIHGYLDENRIAMDVVVGT 360
            FDEAVALFR+MQI+KVKPDKFTVV LLTGCAQLGALEQGKW+HGYLDENRI MD VVGT
Sbjct: 348 HFDEAVALFRKMQIQKVKPDKFTVVALLTGCAQLGALEQGKWMHGYLDENRITMDAVVGT 407

Query: 361 ALIEMYSKCGCVDKSLEIFYKLEDKDTASWTSIICGLAMNGKTGDALRLFSEMELVGAKP 420
           ALIEMYSKCGCV+KSLEIFY+LE+KDTASWTSIICGLAMNGKTG+ALRLFSEMELVGAKP
Sbjct: 408 ALIEMYSKCGCVNKSLEIFYELEEKDTASWTSIICGLAMNGKTGEALRLFSEMELVGAKP 467

Query: 421 DDITFIGVLSACSHGGLVKEGRRFFNLMKKVYRIEPKVEHYGCVIDLLGRAGLLNEAEEL 480
           DDITFIGVLSACSHGGLV+EGRRFFNLMKKVYRIEPKVEHYGCVIDLLGRAGLL+EAEEL
Sbjct: 468 DDITFIGVLSACSHGGLVEEGRRFFNLMKKVYRIEPKVEHYGCVIDLLGRAGLLDEAEEL 527

Query: 481 IQGIPNENGETVVPLYGALLSACRIHNNVDIGERVAKKLVNIESCDSSIHTLLANIYASV 540
           IQ IPNEN + +VPLYGALLSACRIHNNVD+GER++KKLVN ESCDSSIHTLLANIYAS 
Sbjct: 528 IQEIPNENDQILVPLYGALLSACRIHNNVDMGERLSKKLVNFESCDSSIHTLLANIYASA 587

Query: 541 DRWEDAKEVRRKMKELGVKKMPGCSSIEVDGIVHEFLVGDPSHPEMIEICSMLDRVAGQL 600
           DRWEDAK+VRRKMKELGVKKMPGCSSIEVDGIVHEFLVGDPSHPEMIEICSMLDRV G L
Sbjct: 588 DRWEDAKKVRRKMKELGVKKMPGCSSIEVDGIVHEFLVGDPSHPEMIEICSMLDRVTGPL 647

Query: 601 LGSKESQ--LERVMPHYKDTQYCSFVEF 627
           LGSKE Q   ERV+P   DTQ+ S VEF
Sbjct: 648 LGSKEFQFEFERVVPLRLDTQFWSLVEF 675

[Close]
BLAST of Lsi06G009270 vs. NCBI nr
Match: XP_038880251.1 (pentatricopeptide repeat-containing protein At1g31430 [Benincasa hispida] >XP_038880252.1 pentatricopeptide repeat-containing protein At1g31430 [Benincasa hispida] >XP_038880253.1 pentatricopeptide repeat-containing protein At1g31430 [Benincasa hispida] >XP_038880254.1 pentatricopeptide repeat-containing protein At1g31430 [Benincasa hispida])

HSP 1 Score: 1201.8 bits (3108), Expect = 0.0e+00
Identity = 584/626 (93.29%), Postives = 607/626 (96.96%), Query Frame = 0 

Query: 1   MDQLKQIQSQIFRIGLEGDQDTINKLMAFCADSSLGNLHYAERIFDYIQDPSLFVYNVMV 60
           MDQLKQIQSQIFRIGLEGDQDTI+K M FCADSSLGNLHYAER+FDYIQ+PSL VYNVMV
Sbjct: 48  MDQLKQIQSQIFRIGLEGDQDTIDKFMTFCADSSLGNLHYAERMFDYIQEPSLLVYNVMV 107

Query: 61  KMYAKRRIFRKVILLFQQLREDELWPDNFTYPFVLKAIGCLRDVRQGEKVHGFVVKTGMD 120
           K+YAKR IF KVILLFQQLREDELWPDNFTYPFVLKAIGCLRDVRQGEKVHGFVVKTGMD
Sbjct: 108 KVYAKRGIFSKVILLFQQLREDELWPDNFTYPFVLKAIGCLRDVRQGEKVHGFVVKTGMD 167

Query: 121 FDNYVCNSLMDMYSELDNVENAKKLFDEMTTIDSVSWNVMISGYVRCRRFEDAISTFREM 180
           FDNYVCNSLMDMYS+L NVENAKKLFD+MTT DSVSWNVMISGYVRCRRFEDAI TFREM
Sbjct: 168 FDNYVCNSLMDMYSKLGNVENAKKLFDKMTTRDSVSWNVMISGYVRCRRFEDAIGTFREM 227

Query: 181 QQLSNEKPGEATVVSTLSACTALKNLQLGEEIHNYVRKELGFTTIINNALLDMYAKCGCL 240
           QQ SNEKP EATVVSTLSAC ALKNL+LGEEIH+YVRKELGFTTIINNALLDMYAKCGCL
Sbjct: 228 QQESNEKPNEATVVSTLSACIALKNLELGEEIHDYVRKELGFTTIINNALLDMYAKCGCL 287

Query: 241 NIARNIFDEMPMKNVICWTSMISGYINCCDLREARDLFDRSPVRDVVLWTAMINGYVQFH 300
           NIARNIFDEMP+KNVICWTSMISGYINC DLREARDLFDRSPV+DVVLWTAMINGYVQFH
Sbjct: 288 NIARNIFDEMPVKNVICWTSMISGYINCGDLREARDLFDRSPVKDVVLWTAMINGYVQFH 347

Query: 301 QFDEAVALFREMQIRKVKPDKFTVVTLLTGCAQLGALEQGKWIHGYLDENRIAMDVVVGT 360
            FDEAVALFREMQIR+VKPDKFTVVTLLTGCAQLGALEQGKWIHGYLDENRI MDVVVGT
Sbjct: 348 HFDEAVALFREMQIRRVKPDKFTVVTLLTGCAQLGALEQGKWIHGYLDENRITMDVVVGT 407

Query: 361 ALIEMYSKCGCVDKSLEIFYKLEDKDTASWTSIICGLAMNGKTGDALRLFSEMELVGAKP 420
           ALIEMYSKCGCVDKSLEIFYKL++KDTASWTSIICGLAMNGKTG+ALRLFSEME VGAKP
Sbjct: 408 ALIEMYSKCGCVDKSLEIFYKLKNKDTASWTSIICGLAMNGKTGEALRLFSEMEFVGAKP 467

Query: 421 DDITFIGVLSACSHGGLVKEGRRFFNLMKKVYRIEPKVEHYGCVIDLLGRAGLLNEAEEL 480
           DDITFIGVLSACSHGGLV+EGR FFNLMKKVYRIEPKVEHYGCVIDLLGRAGLL+EAEEL
Sbjct: 468 DDITFIGVLSACSHGGLVEEGRMFFNLMKKVYRIEPKVEHYGCVIDLLGRAGLLDEAEEL 527

Query: 481 IQGIPNENGETVVPLYGALLSACRIHNNVDIGERVAKKLVNIESCDSSIHTLLANIYASV 540
           IQGIPNENGE VVPLYGALLSAC+IHNNVD+GER+AKKLV+IESCDSSIHTLLA+IYASV
Sbjct: 528 IQGIPNENGEIVVPLYGALLSACKIHNNVDMGERLAKKLVSIESCDSSIHTLLASIYASV 587

Query: 541 DRWEDAKEVRRKMKELGVKKMPGCSSIEVDGIVHEFLVGDPSHPEMIEICSMLDRVAGQL 600
           DRWEDAK+VRRKMKELGVKKMPGCSSIEVDGIVHEFLVGDPSHPEMIEICSMLD VAGQL
Sbjct: 588 DRWEDAKKVRRKMKELGVKKMPGCSSIEVDGIVHEFLVGDPSHPEMIEICSMLDIVAGQL 647

Query: 601 LGSKESQLERVMPHYKDTQYCSFVEF 627
           LGSKESQLERVMP YKDT+YCSFVEF
Sbjct: 648 LGSKESQLERVMPLYKDTRYCSFVEF 673

[Close]
BLAST of Lsi06G009270 vs. NCBI nr
Match: XP_031736069.1 (pentatricopeptide repeat-containing protein At1g31430 [Cucumis sativus] >XP_031736070.1 pentatricopeptide repeat-containing protein At1g31430 [Cucumis sativus] >XP_031736071.1 pentatricopeptide repeat-containing protein At1g31430 [Cucumis sativus])

HSP 1 Score: 1158.3 bits (2995), Expect = 0.0e+00
Identity = 565/625 (90.40%), Postives = 593/625 (94.88%), Query Frame = 0 

Query: 1   MDQLKQIQSQIFRIGLEGDQDTINKLMAFCADSSLGNLHYAERIFDYIQDPSLFVYNVMV 60
           MDQLKQIQSQIFRIGLEGD+DTINKLMAFCADSSLGNL YAE+IF+Y+QDPSLFVYNVMV
Sbjct: 48  MDQLKQIQSQIFRIGLEGDRDTINKLMAFCADSSLGNLRYAEKIFNYVQDPSLFVYNVMV 107

Query: 61  KMYAKRRIFRKVILLFQQLREDELWPDNFTYPFVLKAIGCLRDVRQGEKVHGFVVKTGMD 120
           KMYAKR I RKV+LLFQQLRED LWPD FTYPFVLKAIGCLRDVRQGEKV GF+VKTGMD
Sbjct: 108 KMYAKRGILRKVLLLFQQLREDGLWPDGFTYPFVLKAIGCLRDVRQGEKVRGFIVKTGMD 167

Query: 121 FDNYVCNSLMDMYSELDNVENAKKLFDEMTTIDSVSWNVMISGYVRCRRFEDAISTFREM 180
            DNYV NSL+DMY EL NVENAKKLFDEMTT DSVSWNVMISGYVRCRRFEDAI+TFREM
Sbjct: 168 LDNYVYNSLIDMYYELSNVENAKKLFDEMTTRDSVSWNVMISGYVRCRRFEDAINTFREM 227

Query: 181 QQLSNEKPGEATVVSTLSACTALKNLQLGEEIHNYVRKELGFTTIINNALLDMYAKCGCL 240
           QQ  NEKP EATVVSTLSACTALKNL+LG+EIHNYVRKELGFTT I+NALLDMYAKCGCL
Sbjct: 228 QQEGNEKPDEATVVSTLSACTALKNLELGDEIHNYVRKELGFTTRIDNALLDMYAKCGCL 287

Query: 241 NIARNIFDEMPMKNVICWTSMISGYINCCDLREARDLFDRSPVRDVVLWTAMINGYVQFH 300
           NIARNIFDEM MKNVICWTSMISGYINC DLREARDLFD+SPVRDVVLWTAMINGYVQFH
Sbjct: 288 NIARNIFDEMSMKNVICWTSMISGYINCGDLREARDLFDKSPVRDVVLWTAMINGYVQFH 347

Query: 301 QFDEAVALFREMQIRKVKPDKFTVVTLLTGCAQLGALEQGKWIHGYLDENRIAMDVVVGT 360
            FD+AVALFREMQI++VKPDKFTVVTLLTGCAQLGALEQGKWIHGYLDENRI MDVVVGT
Sbjct: 348 HFDDAVALFREMQIQRVKPDKFTVVTLLTGCAQLGALEQGKWIHGYLDENRITMDVVVGT 407

Query: 361 ALIEMYSKCGCVDKSLEIFYKLEDKDTASWTSIICGLAMNGKTGDALRLFSEMELVGAKP 420
           ALIEMYSKCGCVDKSLEIFY+LEDKDTASWTSIICGLAMNGKT +ALRLFSEME VGAKP
Sbjct: 408 ALIEMYSKCGCVDKSLEIFYELEDKDTASWTSIICGLAMNGKTSEALRLFSEMERVGAKP 467

Query: 421 DDITFIGVLSACSHGGLVKEGRRFFNLMKKVYRIEPKVEHYGCVIDLLGRAGLLNEAEEL 480
           DDITFIGVLSACSHGGLV+EGRRFFN MKKV+RIEPKVEHYGCVIDLLGRAGLL+EAEEL
Sbjct: 468 DDITFIGVLSACSHGGLVEEGRRFFNSMKKVHRIEPKVEHYGCVIDLLGRAGLLDEAEEL 527

Query: 481 IQGIPNENGETVVPLYGALLSACRIHNNVDIGERVAKKLVNIESCDSSIHTLLANIYASV 540
           IQ IP EN E VVPLYGALLSACRIHNNVD+GER+AKKL NIESCDSSIHTLLANIYASV
Sbjct: 528 IQEIPIENCEIVVPLYGALLSACRIHNNVDMGERLAKKLENIESCDSSIHTLLANIYASV 587

Query: 541 DRWEDAKEVRRKMKELGVKKMPGCSSIEVDGIVHEFLVGDPSHPEMIEICSMLDRVAGQL 600
           DRWEDAK+VRRKMKELGVKKMPGCS IEVDGIVHEFLVGDPSHPEM+EICSML+RV GQL
Sbjct: 588 DRWEDAKKVRRKMKELGVKKMPGCSLIEVDGIVHEFLVGDPSHPEMMEICSMLNRVTGQL 647

Query: 601 LGSKESQLERVMPHYKDTQYCSFVE 626
           LG KESQ+E VMP YKDTQ+C+FVE
Sbjct: 648 LGLKESQVESVMPLYKDTQHCNFVE 672

[Close]
BLAST of Lsi06G009270 vs. NCBI nr
Match: TYK14505.1 (pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 1130.2 bits (2922), Expect = 0.0e+00
Identity = 554/625 (88.64%), Postives = 585/625 (93.60%), Query Frame = 0 

Query: 1   MDQLKQIQSQIFRIGLEGDQDTINKLMAFCADSSLGNLHYAERIFDYIQDPSLFVYNVMV 60
           M+QLK+IQSQIFRIGLEGD+D INKLMAFCAD SLGNL YAE+IFDY+QDPSLFVYNVMV
Sbjct: 210 MEQLKRIQSQIFRIGLEGDRDIINKLMAFCADLSLGNLRYAEKIFDYVQDPSLFVYNVMV 269

Query: 61  KMYAKRRIFRKVILLFQQLREDELWPDNFTYPFVLKAIGCLRDVRQGEKVHGFVVKTGMD 120
           KMYAKR + RKV+LLFQQLRED+LWPDNFTYPFVLKAIGCLRDV QGEK+HGFVVKTGM+
Sbjct: 270 KMYAKRGLLRKVLLLFQQLREDQLWPDNFTYPFVLKAIGCLRDVGQGEKLHGFVVKTGMN 329

Query: 121 FDNYVCNSLMDMYSELDNVENAKKLFDEMTTIDSVSWNVMISGYVRCRRFEDAISTFREM 180
            DNYVCNSLMDMYSEL NVENAKKLFDEMTT DSVSWNVMISGYV CRRFEDAI+TFREM
Sbjct: 330 LDNYVCNSLMDMYSELGNVENAKKLFDEMTTRDSVSWNVMISGYVGCRRFEDAINTFREM 389

Query: 181 QQLSNEKPGEATVVSTLSACTALKNLQLGEEIHNYVRKELGFTTIINNALLDMYAKCGCL 240
           QQ  NEKP EATVVSTLSACTALKNL+LG+EIHNYVRKELGFT  I+NALLDMYAKCGCL
Sbjct: 390 QQEGNEKPDEATVVSTLSACTALKNLELGDEIHNYVRKELGFTPRIDNALLDMYAKCGCL 449

Query: 241 NIARNIFDEMPMKNVICWTSMISGYINCCDLREARDLFDRSPVRDVVLWTAMINGYVQFH 300
           NI+RNIFDEMPMKNVICWTSMISGYINC DLREARDLFD+SPVRDVVLWTAMINGYVQFH
Sbjct: 450 NISRNIFDEMPMKNVICWTSMISGYINCGDLREARDLFDKSPVRDVVLWTAMINGYVQFH 509

Query: 301 QFDEAVALFREMQIRKVKPDKFTVVTLLTGCAQLGALEQGKWIHGYLDENRIAMDVVVGT 360
            FD+AVALFREMQI+KVKPDKFTVVTLLTGCAQLGALEQGKWIHGYLDENRI +DVVVGT
Sbjct: 510 HFDDAVALFREMQIQKVKPDKFTVVTLLTGCAQLGALEQGKWIHGYLDENRITIDVVVGT 569

Query: 361 ALIEMYSKCGCVDKSLEIFYKLEDKDTASWTSIICGLAMNGKTGDALRLFSEMELVGAKP 420
           ALIEMYSKCGCVDKSLEIFY+LEDKDTASWTSIICGLAMNGKT +ALRLFSEMELVGAKP
Sbjct: 570 ALIEMYSKCGCVDKSLEIFYELEDKDTASWTSIICGLAMNGKTSEALRLFSEMELVGAKP 629

Query: 421 DDITFIGVLSACSHGGLVKEGRRFFNLMKKVYRIEPKVEHYGCVIDLLGRAGLLNEAEEL 480
           DDITFIGVLSACSHGGLV+EGRRFFN MKKVYRIEPKVEHYGCV+DLLGRAGLL+EAEEL
Sbjct: 630 DDITFIGVLSACSHGGLVEEGRRFFNSMKKVYRIEPKVEHYGCVVDLLGRAGLLDEAEEL 689

Query: 481 IQGIPNENGETVVPLYGALLSACRIHNNVDIGERVAKKLVNIESCDSSIHTLLANIYASV 540
           IQ I  EN E VV LYGALLSACRIHNNVD+GER+AKKLVNIE CDSSIH LLANIYAS 
Sbjct: 690 IQEISIENCEIVVSLYGALLSACRIHNNVDMGERLAKKLVNIEPCDSSIHALLANIYASA 749

Query: 541 DRWEDAKEVRRKMKELGVKKMPGCSSIEVDGIVHEFLVGDPSHPEMIEICSMLDRVAGQL 600
           DRWEDAK+VRRKMKELGVKKMPGCSSIEVDGIVHEFLVGDPSHPE IEI SML+RV+ QL
Sbjct: 750 DRWEDAKKVRRKMKELGVKKMPGCSSIEVDGIVHEFLVGDPSHPETIEIRSMLNRVSRQL 809

Query: 601 LGSKESQLERVMPHYKDTQYCSFVE 626
           LG KESQL   M    DTQ+C+FVE
Sbjct: 810 LGLKESQL---MSFDNDTQHCNFVE 831

[Close]
BLAST of Lsi06G009270 vs. NCBI nr
Match: KAA0046726.1 (pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 1130.2 bits (2922), Expect = 0.0e+00
Identity = 554/625 (88.64%), Postives = 585/625 (93.60%), Query Frame = 0 

Query: 1   MDQLKQIQSQIFRIGLEGDQDTINKLMAFCADSSLGNLHYAERIFDYIQDPSLFVYNVMV 60
           M+QLK+IQSQIFRIGLEGD+D INKLMAFCAD SLGNL YAE+IFDY+QDPSLFVYNVMV
Sbjct: 105 MEQLKRIQSQIFRIGLEGDRDIINKLMAFCADLSLGNLRYAEKIFDYVQDPSLFVYNVMV 164

Query: 61  KMYAKRRIFRKVILLFQQLREDELWPDNFTYPFVLKAIGCLRDVRQGEKVHGFVVKTGMD 120
           KMYAKR + RKV+LLFQQLRED+LWPDNFTYPFVLKAIGCLRDV QGEK+HGFVVKTGM+
Sbjct: 165 KMYAKRGLLRKVLLLFQQLREDQLWPDNFTYPFVLKAIGCLRDVGQGEKLHGFVVKTGMN 224

Query: 121 FDNYVCNSLMDMYSELDNVENAKKLFDEMTTIDSVSWNVMISGYVRCRRFEDAISTFREM 180
            DNYVCNSLMDMYSEL NVENAKKLFDEMTT DSVSWNVMISGYV CRRFEDAI+TFREM
Sbjct: 225 LDNYVCNSLMDMYSELGNVENAKKLFDEMTTRDSVSWNVMISGYVGCRRFEDAINTFREM 284

Query: 181 QQLSNEKPGEATVVSTLSACTALKNLQLGEEIHNYVRKELGFTTIINNALLDMYAKCGCL 240
           QQ  NEKP EATVVSTLSACTALKNL+LG+EIHNYVRKELGFT  I+NALLDMYAKCGCL
Sbjct: 285 QQEGNEKPDEATVVSTLSACTALKNLELGDEIHNYVRKELGFTPRIDNALLDMYAKCGCL 344

Query: 241 NIARNIFDEMPMKNVICWTSMISGYINCCDLREARDLFDRSPVRDVVLWTAMINGYVQFH 300
           NI+RNIFDEMPMKNVICWTSMISGYINC DLREARDLFD+SPVRDVVLWTAMINGYVQFH
Sbjct: 345 NISRNIFDEMPMKNVICWTSMISGYINCGDLREARDLFDKSPVRDVVLWTAMINGYVQFH 404

Query: 301 QFDEAVALFREMQIRKVKPDKFTVVTLLTGCAQLGALEQGKWIHGYLDENRIAMDVVVGT 360
            FD+AVALFREMQI+KVKPDKFTVVTLLTGCAQLGALEQGKWIHGYLDENRI +DVVVGT
Sbjct: 405 HFDDAVALFREMQIQKVKPDKFTVVTLLTGCAQLGALEQGKWIHGYLDENRITIDVVVGT 464

Query: 361 ALIEMYSKCGCVDKSLEIFYKLEDKDTASWTSIICGLAMNGKTGDALRLFSEMELVGAKP 420
           ALIEMYSKCGCVDKSLEIFY+LEDKDTASWTSIICGLAMNGKT +ALRLFSEMELVGAKP
Sbjct: 465 ALIEMYSKCGCVDKSLEIFYELEDKDTASWTSIICGLAMNGKTSEALRLFSEMELVGAKP 524

Query: 421 DDITFIGVLSACSHGGLVKEGRRFFNLMKKVYRIEPKVEHYGCVIDLLGRAGLLNEAEEL 480
           DDITFIGVLSACSHGGLV+EGRRFFN MKKVYRIEPKVEHYGCV+DLLGRAGLL+EAEEL
Sbjct: 525 DDITFIGVLSACSHGGLVEEGRRFFNSMKKVYRIEPKVEHYGCVVDLLGRAGLLDEAEEL 584

Query: 481 IQGIPNENGETVVPLYGALLSACRIHNNVDIGERVAKKLVNIESCDSSIHTLLANIYASV 540
           IQ I  EN E VV LYGALLSACRIHNNVD+GER+AKKLVNIE CDSSIH LLANIYAS 
Sbjct: 585 IQEISIENCEIVVSLYGALLSACRIHNNVDMGERLAKKLVNIEPCDSSIHALLANIYASA 644

Query: 541 DRWEDAKEVRRKMKELGVKKMPGCSSIEVDGIVHEFLVGDPSHPEMIEICSMLDRVAGQL 600
           DRWEDAK+VRRKMKELGVKKMPGCSSIEVDGIVHEFLVGDPSHPE IEI SML+RV+ QL
Sbjct: 645 DRWEDAKKVRRKMKELGVKKMPGCSSIEVDGIVHEFLVGDPSHPETIEIRSMLNRVSRQL 704

Query: 601 LGSKESQLERVMPHYKDTQYCSFVE 626
           LG KESQL   M    DTQ+C+FVE
Sbjct: 705 LGLKESQL---MSFDNDTQHCNFVE 726

[Close]
BLAST of Lsi06G009270 vs. NCBI nr
Match: XP_008464984.1 (PREDICTED: pentatricopeptide repeat-containing protein At1g31430 [Cucumis melo] >XP_008464985.1 PREDICTED: pentatricopeptide repeat-containing protein At1g31430 [Cucumis melo] >XP_008464986.1 PREDICTED: pentatricopeptide repeat-containing protein At1g31430 [Cucumis melo] >XP_008464987.1 PREDICTED: pentatricopeptide repeat-containing protein At1g31430 [Cucumis melo] >XP_008464988.1 PREDICTED: pentatricopeptide repeat-containing protein At1g31430 [Cucumis melo] >XP_008464990.1 PREDICTED: pentatricopeptide repeat-containing protein At1g31430 [Cucumis melo] >XP_008464991.1 PREDICTED: pentatricopeptide repeat-containing protein At1g31430 [Cucumis melo] >XP_008464992.1 PREDICTED: pentatricopeptide repeat-containing protein At1g31430 [Cucumis melo] >XP_008464993.1 PREDICTED: pentatricopeptide repeat-containing protein At1g31430 [Cucumis melo] >XP_008464994.1 PREDICTED: pentatricopeptide repeat-containing protein At1g31430 [Cucumis melo] >XP_016903308.1 PREDICTED: pentatricopeptide repeat-containing protein At1g31430 [Cucumis melo])

HSP 1 Score: 1130.2 bits (2922), Expect = 0.0e+00
Identity = 554/625 (88.64%), Postives = 585/625 (93.60%), Query Frame = 0 

Query: 1   MDQLKQIQSQIFRIGLEGDQDTINKLMAFCADSSLGNLHYAERIFDYIQDPSLFVYNVMV 60
           M+QLK+IQSQIFRIGLEGD+D INKLMAFCAD SLGNL YAE+IFDY+QDPSLFVYNVMV
Sbjct: 48  MEQLKRIQSQIFRIGLEGDRDIINKLMAFCADLSLGNLRYAEKIFDYVQDPSLFVYNVMV 107

Query: 61  KMYAKRRIFRKVILLFQQLREDELWPDNFTYPFVLKAIGCLRDVRQGEKVHGFVVKTGMD 120
           KMYAKR + RKV+LLFQQLRED+LWPDNFTYPFVLKAIGCLRDV QGEK+HGFVVKTGM+
Sbjct: 108 KMYAKRGLLRKVLLLFQQLREDQLWPDNFTYPFVLKAIGCLRDVGQGEKLHGFVVKTGMN 167

Query: 121 FDNYVCNSLMDMYSELDNVENAKKLFDEMTTIDSVSWNVMISGYVRCRRFEDAISTFREM 180
            DNYVCNSLMDMYSEL NVENAKKLFDEMTT DSVSWNVMISGYV CRRFEDAI+TFREM
Sbjct: 168 LDNYVCNSLMDMYSELGNVENAKKLFDEMTTRDSVSWNVMISGYVGCRRFEDAINTFREM 227

Query: 181 QQLSNEKPGEATVVSTLSACTALKNLQLGEEIHNYVRKELGFTTIINNALLDMYAKCGCL 240
           QQ  NEKP EATVVSTLSACTALKNL+LG+EIHNYVRKELGFT  I+NALLDMYAKCGCL
Sbjct: 228 QQEGNEKPDEATVVSTLSACTALKNLELGDEIHNYVRKELGFTPRIDNALLDMYAKCGCL 287

Query: 241 NIARNIFDEMPMKNVICWTSMISGYINCCDLREARDLFDRSPVRDVVLWTAMINGYVQFH 300
           NI+RNIFDEMPMKNVICWTSMISGYINC DLREARDLFD+SPVRDVVLWTAMINGYVQFH
Sbjct: 288 NISRNIFDEMPMKNVICWTSMISGYINCGDLREARDLFDKSPVRDVVLWTAMINGYVQFH 347

Query: 301 QFDEAVALFREMQIRKVKPDKFTVVTLLTGCAQLGALEQGKWIHGYLDENRIAMDVVVGT 360
            FD+AVALFREMQI+KVKPDKFTVVTLLTGCAQLGALEQGKWIHGYLDENRI +DVVVGT
Sbjct: 348 HFDDAVALFREMQIQKVKPDKFTVVTLLTGCAQLGALEQGKWIHGYLDENRITIDVVVGT 407

Query: 361 ALIEMYSKCGCVDKSLEIFYKLEDKDTASWTSIICGLAMNGKTGDALRLFSEMELVGAKP 420
           ALIEMYSKCGCVDKSLEIFY+LEDKDTASWTSIICGLAMNGKT +ALRLFSEMELVGAKP
Sbjct: 408 ALIEMYSKCGCVDKSLEIFYELEDKDTASWTSIICGLAMNGKTSEALRLFSEMELVGAKP 467

Query: 421 DDITFIGVLSACSHGGLVKEGRRFFNLMKKVYRIEPKVEHYGCVIDLLGRAGLLNEAEEL 480
           DDITFIGVLSACSHGGLV+EGRRFFN MKKVYRIEPKVEHYGCV+DLLGRAGLL+EAEEL
Sbjct: 468 DDITFIGVLSACSHGGLVEEGRRFFNSMKKVYRIEPKVEHYGCVVDLLGRAGLLDEAEEL 527

Query: 481 IQGIPNENGETVVPLYGALLSACRIHNNVDIGERVAKKLVNIESCDSSIHTLLANIYASV 540
           IQ I  EN E VV LYGALLSACRIHNNVD+GER+AKKLVNIE CDSSIH LLANIYAS 
Sbjct: 528 IQEISIENCEIVVSLYGALLSACRIHNNVDMGERLAKKLVNIEPCDSSIHALLANIYASA 587

Query: 541 DRWEDAKEVRRKMKELGVKKMPGCSSIEVDGIVHEFLVGDPSHPEMIEICSMLDRVAGQL 600
           DRWEDAK+VRRKMKELGVKKMPGCSSIEVDGIVHEFLVGDPSHPE IEI SML+RV+ QL
Sbjct: 588 DRWEDAKKVRRKMKELGVKKMPGCSSIEVDGIVHEFLVGDPSHPETIEIRSMLNRVSRQL 647

Query: 601 LGSKESQLERVMPHYKDTQYCSFVE 626
           LG KESQL   M    DTQ+C+FVE
Sbjct: 648 LGLKESQL---MSFDNDTQHCNFVE 669

[Close]
BLAST of Lsi06G009270 vs. TAIR 10
Match: AT1G31430.1 (Pentatricopeptide repeat (PPR-like) superfamily protein )

HSP 1 Score: 681.4 bits (1757), Expect = 6.8e-196
Identity = 328/564 (58.16%), Postives = 426/564 (75.53%), Query Frame = 0 

Query: 48  IQDPSLFVYNVMVKMYAKRRIFRKVILLFQQLREDELWPDNFTYPFVLKAIGCLRDVRQG 107
           +Q PSL +YN M+K  A  + F KV+ LF +LR   L+PDNFT P VLK+IG LR V +G
Sbjct: 6   LQTPSLLMYNKMLKSLADGKSFTKVLALFGELRGQGLYPDNFTLPVVLKSIGRLRKVIEG 65

Query: 108 EKVHGFVVKTGMDFDNYVCNSLMDMYSELDNVENAKKLFDEMTTIDSVSWNVMISGYVRC 167
           EKVHG+ VK G++FD+YV NSLM MY+ L  +E   K+FDEM   D VSWN +IS YV  
Sbjct: 66  EKVHGYAVKAGLEFDSYVSNSLMGMYASLGKIEITHKVFDEMPQRDVVSWNGLISSYVGN 125

Query: 168 RRFEDAISTFREMQQLSNEKPGEATVVSTLSACTALKNLQLGEEIHNYVRKELGFTTIIN 227
            RFEDAI  F+ M Q SN K  E T+VSTLSAC+ALKNL++GE I+ +V  E   +  I 
Sbjct: 126 GRFEDAIGVFKRMSQESNLKFDEGTIVSTLSACSALKNLEIGERIYRFVVTEFEMSVRIG 185

Query: 228 NALLDMYAKCGCLNIARNIFDEMPMKNVICWTSMISGYINCCDLREARDLFDRSPVRDVV 287
           NAL+DM+ KCGCL+ AR +FD M  KNV CWTSM+ GY++   + EAR LF+RSPV+DVV
Sbjct: 186 NALVDMFCKCGCLDKARAVFDSMRDKNVKCWTSMVFGYVSTGRIDEARVLFERSPVKDVV 245

Query: 288 LWTAMINGYVQFHQFDEAVALFREMQIRKVKPDKFTVVTLLTGCAQLGALEQGKWIHGYL 347
           LWTAM+NGYVQF++FDEA+ LFR MQ   ++PD F +V+LLTGCAQ GALEQGKWIHGY+
Sbjct: 246 LWTAMMNGYVQFNRFDEALELFRCMQTAGIRPDNFVLVSLLTGCAQTGALEQGKWIHGYI 305

Query: 348 DENRIAMDVVVGTALIEMYSKCGCVDKSLEIFYKLEDKDTASWTSIICGLAMNGKTGDAL 407
           +ENR+ +D VVGTAL++MY+KCGC++ +LE+FY+++++DTASWTS+I GLAMNG +G AL
Sbjct: 306 NENRVTVDKVVGTALVDMYAKCGCIETALEVFYEIKERDTASWTSLIYGLAMNGMSGRAL 365

Query: 408 RLFSEMELVGAKPDDITFIGVLSACSHGGLVKEGRRFFNLMKKVYRIEPKVEHYGCVIDL 467
            L+ EME VG + D ITF+ VL+AC+HGG V EGR+ F+ M + + ++PK EH  C+IDL
Sbjct: 366 DLYYEMENVGVRLDAITFVAVLTACNHGGFVAEGRKIFHSMTERHNVQPKSEHCSCLIDL 425

Query: 468 LGRAGLLNEAEELIQGIPNENGETVVPLYGALLSACRIHNNVDIGERVAKKLVNIESCDS 527
           L RAGLL+EAEELI  +  E+ ET+VP+Y +LLSA R + NV I ERVA+KL  +E  DS
Sbjct: 426 LCRAGLLDEAEELIDKMRGESDETLVPVYCSLLSAARNYGNVKIAERVAEKLEKVEVSDS 485

Query: 528 SIHTLLANIYASVDRWEDAKEVRRKMKELGVKKMPGCSSIEVDGIVHEFLVGDP--SHPE 587
           S HTLLA++YAS +RWED   VRRKMK+LG++K PGCSSIE+DG+ HEF+VGD   SHP+
Sbjct: 486 SAHTLLASVYASANRWEDVTNVRRKMKDLGIRKFPGCSSIEIDGVGHEFIVGDDLLSHPK 545

Query: 588 MIEICSMLDRVAGQLLGSKESQLE 610
           M EI SML +    +L  +  +++
Sbjct: 546 MDEINSMLHQTTNLMLDLEHKEID 569

[Close]
BLAST of Lsi06G009270 vs. TAIR 10
Match: AT2G22410.1 (SLOW GROWTH 1 )

HSP 1 Score: 501.9 bits (1291), Expect = 7.4e-142
Identity = 248/594 (41.75%), Postives = 389/594 (65.49%), Query Frame = 0 

Query: 4   LKQIQSQIFRIGLEGDQDTINKLMAFCADSSLGNLHYAERIFDYIQDPSLFVYNVMVKMY 63
           LKQIQ+Q+   GL  D    ++L+AFCA S    L Y+ +I   I++P++F +NV ++ +
Sbjct: 69  LKQIQAQMIINGLILDPFASSRLIAFCALSESRYLDYSVKILKGIENPNIFSWNVTIRGF 128

Query: 64  AKRRIFRKVILLFQQLRED---ELWPDNFTYPFVLKAIGCLRDVRQGEKVHGFVVKTGMD 123
           ++    ++  LL++Q+      E  PD+FTYP + K    LR    G  + G V+K  ++
Sbjct: 129 SESENPKESFLLYKQMLRHGCCESRPDHFTYPVLFKVCADLRLSSLGHMILGHVLKLRLE 188

Query: 124 FDNYVCNSLMDMYSELDNVENAKKLFDEMTTIDSVSWNVMISGYVRCRRFEDAISTFREM 183
             ++V N+ + M++   ++ENA+K+FDE    D VSWN +I+GY +    E AI  ++ M
Sbjct: 189 LVSHVHNASIHMFASCGDMENARKVFDESPVRDLVSWNCLINGYKKIGEAEKAIYVYKLM 248

Query: 184 QQLSNEKPGEATVVSTLSACTALKNLQLGEEIHNYVRKE-LGFTTIINNALLDMYAKCGC 243
           +     KP + T++  +S+C+ L +L  G+E + YV++  L  T  + NAL+DM++KCG 
Sbjct: 249 ES-EGVKPDDVTMIGLVSSCSMLGDLNRGKEFYEYVKENGLRMTIPLVNALMDMFSKCGD 308

Query: 244 LNIARNIFDEMPMKNVICWTSMISGYINCCDLREARDLFDRSPVRDVVLWTAMINGYVQF 303
           ++ AR IFD +  + ++ WT+MISGY  C  L  +R LFD    +DVVLW AMI G VQ 
Sbjct: 309 IHEARRIFDNLEKRTIVSWTTMISGYARCGLLDVSRKLFDDMEEKDVVLWNAMIGGSVQA 368

Query: 304 HQFDEAVALFREMQIRKVKPDKFTVVTLLTGCAQLGALEQGKWIHGYLDENRIAMDVVVG 363
            +  +A+ALF+EMQ    KPD+ T++  L+ C+QLGAL+ G WIH Y+++  ++++V +G
Sbjct: 369 KRGQDALALFQEMQTSNTKPDEITMIHCLSACSQLGALDVGIWIHRYIEKYSLSLNVALG 428

Query: 364 TALIEMYSKCGCVDKSLEIFYKLEDKDTASWTSIICGLAMNGKTGDALRLFSEMELVGAK 423
           T+L++MY+KCG + ++L +F+ ++ +++ ++T+II GLA++G    A+  F+EM   G  
Sbjct: 429 TSLVDMYAKCGNISEALSVFHGIQTRNSLTYTAIIGGLALHGDASTAISYFNEMIDAGIA 488

Query: 424 PDDITFIGVLSACSHGGLVKEGRRFFNLMKKVYRIEPKVEHYGCVIDLLGRAGLLNEAEE 483
           PD+ITFIG+LSAC HGG+++ GR +F+ MK  + + P+++HY  ++DLLGRAGLL EA+ 
Sbjct: 489 PDEITFIGLLSACCHGGMIQTGRDYFSQMKSRFNLNPQLKHYSIMVDLLGRAGLLEEADR 548

Query: 484 LIQGIPNENGETVVPLYGALLSACRIHNNVDIGERVAKKLVNIESCDSSIHTLLANIYAS 543
           L++ +P E    V   +GALL  CR+H NV++GE+ AKKL+ ++  DS I+ LL  +Y  
Sbjct: 549 LMESMPMEADAAV---WGALLFGCRMHGNVELGEKAAKKLLELDPSDSGIYVLLDGMYGE 608

Query: 544 VDRWEDAKEVRRKMKELGVKKMPGCSSIEVDGIVHEFLVGDPSHPEMIEICSML 594
            + WEDAK  RR M E GV+K+PGCSSIEV+GIV EF+V D S PE  +I   L
Sbjct: 609 ANMWEDAKRARRMMNERGVEKIPGCSSIEVNGIVCEFIVRDKSRPESEKIYDRL 658

[Close]
BLAST of Lsi06G009270 vs. TAIR 10
Match: AT3G15930.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 489.6 bits (1259), Expect = 3.8e-138
Identity = 247/600 (41.17%), Postives = 393/600 (65.50%), Query Frame = 0 

Query: 2   DQLKQIQSQIFRIGLEGDQDTINKLMAFCADSSLGNLHYAERIFDYIQDPSLFVYNVMVK 61
           DQ KQ+ SQ    G+  +     KL  F      G++ YA ++F  I +P + V+N M+K
Sbjct: 48  DQFKQLHSQSITRGVAPNPTFQKKLFVFWCSRLGGHVSYAYKLFVKIPEPDVVVWNNMIK 107

Query: 62  MYAKRRIFRKVILLFQQLREDELWPDNFTYPFVLKAIGCLRD---VRQGEKVHGFVVKTG 121
            ++K     + + L+  + ++ + PD+ T+PF+L   G  RD   +  G+K+H  VVK G
Sbjct: 108 GWSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFLLN--GLKRDGGALACGKKLHCHVVKFG 167

Query: 122 MDFDNYVCNSLMDMYSELDNVENAKKLFDEMTTIDSVSWNVMISGYVRCRRFEDAISTFR 181
           +  + YV N+L+ MYS    ++ A+ +FD     D  SWN+MISGY R + +E++I    
Sbjct: 168 LGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVFSWNLMISGYNRMKEYEESIELLV 227

Query: 182 EMQQLSNEKPGEATVVSTLSACTALKNLQLGEEIHNYVRK-ELGFTTIINNALLDMYAKC 241
           EM++ +   P   T++  LSAC+ +K+  L + +H YV + +   +  + NAL++ YA C
Sbjct: 228 EMER-NLVSPTSVTLLLVLSACSKVKDKDLCKRVHEYVSECKTEPSLRLENALVNAYAAC 287

Query: 242 GCLNIARNIFDEMPMKNVICWTSMISGYINCCDLREARDLFDRSPVRDVVLWTAMINGYV 301
           G ++IA  IF  M  ++VI WTS++ GY+   +L+ AR  FD+ PVRD + WT MI+GY+
Sbjct: 288 GEMDIAVRIFRSMKARDVISWTSIVKGYVERGNLKLARTYFDQMPVRDRISWTIMIDGYL 347

Query: 302 QFHQFDEAVALFREMQIRKVKPDKFTVVTLLTGCAQLGALEQGKWIHGYLDENRIAMDVV 361
           +   F+E++ +FREMQ   + PD+FT+V++LT CA LG+LE G+WI  Y+D+N+I  DVV
Sbjct: 348 RAGCFNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGSLEIGEWIKTYIDKNKIKNDVV 407

Query: 362 VGTALIEMYSKCGCVDKSLEIFYKLEDKDTASWTSIICGLAMNGKTGDALRLFSEMELVG 421
           VG ALI+MY KCGC +K+ ++F+ ++ +D  +WT+++ GLA NG+  +A+++F +M+ + 
Sbjct: 408 VGNALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAMVVGLANNGQGQEAIKVFFQMQDMS 467

Query: 422 AKPDDITFIGVLSACSHGGLVKEGRRFFNLMKKVYRIEPKVEHYGCVIDLLGRAGLLNEA 481
            +PDDIT++GVLSAC+H G+V + R+FF  M+  +RIEP + HYGC++D+LGRAGL+ EA
Sbjct: 468 IQPDDITYLGVLSACNHSGMVDQARKFFAKMRSDHRIEPSLVHYGCMVDMLGRAGLVKEA 527

Query: 482 EELIQGIPNENGETVVPLYGALLSACRIHNNVDIGERVAKKLVNIESCDSSIHTLLANIY 541
            E+++ +P  N  ++V  +GALL A R+HN+  + E  AKK++ +E  + +++ LL NIY
Sbjct: 528 YEILRKMP-MNPNSIV--WGALLGASRLHNDEPMAELAAKKILELEPDNGAVYALLCNIY 587

Query: 542 ASVDRWEDAKEVRRKMKELGVKKMPGCSSIEVDGIVHEFLVGDPSHPEMIEICSMLDRVA 598
           A   RW+D +EVRRK+ ++ +KK PG S IEV+G  HEF+ GD SH +  EI   L+ +A
Sbjct: 588 AGCKRWKDLREVRRKIVDVAIKKTPGFSLIEVNGFAHEFVAGDKSHLQSEEIYMKLEELA 641

[Close]
BLAST of Lsi06G009270 vs. TAIR 10
Match: AT2G29760.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 464.2 bits (1193), Expect = 1.7e-130
Identity = 226/601 (37.60%), Postives = 368/601 (61.23%), Query Frame = 0 

Query: 3   QLKQIQSQIFRIGLEGDQDTINKLMAFCADSSLGNLHYAERIFDYIQDPSLFVYNVMVKM 62
           QLKQ    + R G   D  + +KL A  A SS  +L YA ++FD I  P+ F +N +++ 
Sbjct: 45  QLKQTHGHMIRTGTFSDPYSASKLFAMAALSSFASLEYARKVFDEIPKPNSFAWNTLIRA 104

Query: 63  YAK-RRIFRKVILLFQQLREDELWPDNFTYPFVLKAIGCLRDVRQGEKVHGFVVKTGMDF 122
           YA        +      + E + +P+ +T+PF++KA   +  +  G+ +HG  VK+ +  
Sbjct: 105 YASGPDPVLSIWAFLDMVSESQCYPNKYTFPFLIKAAAEVSSLSLGQSLHGMAVKSAVGS 164

Query: 123 DNYVCNSLMDMYSELDNVENAKKLFDEMTTIDSVSWNVMISGYVRCRRFEDAISTFREMQ 182
           D +V NSL+  Y    ++++A K+F  +   D VSWN MI+G+V+    + A+  F++M+
Sbjct: 165 DVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKME 224

Query: 183 QLSNEKPGEATVVSTLSACTALKNLQLGEEIHNYVRK-ELGFTTIINNALLDMYAKCGCL 242
              + K    T+V  LSAC  ++NL+ G ++ +Y+ +  +     + NA+LDMY KCG +
Sbjct: 225 S-EDVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEENRVNVNLTLANAMLDMYTKCGSI 284

Query: 243 NIARNIFDEMPMKNVICWTSMISGYINCCDLREARDLFDRSPVRDVVLWTAMINGYVQFH 302
             A+ +FD M  K+ + WT+M+ GY    D   AR++ +  P +D+V W A+I+ Y Q  
Sbjct: 285 EDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQNG 344

Query: 303 QFDEAVALFREMQIRK-VKPDKFTVVTLLTGCAQLGALEQGKWIHGYLDENRIAMDVVVG 362
           + +EA+ +F E+Q++K +K ++ T+V+ L+ CAQ+GALE G+WIH Y+ ++ I M+  V 
Sbjct: 345 KPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGRWIHSYIKKHGIRMNFHVT 404

Query: 363 TALIEMYSKCGCVDKSLEIFYKLEDKDTASWTSIICGLAMNGKTGDALRLFSEMELVGAK 422
           +ALI MYSKCG ++KS E+F  +E +D   W+++I GLAM+G   +A+ +F +M+    K
Sbjct: 405 SALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVK 464

Query: 423 PDDITFIGVLSACSHGGLVKEGRRFFNLMKKVYRIEPKVEHYGCVIDLLGRAGLLNEAEE 482
           P+ +TF  V  ACSH GLV E    F+ M+  Y I P+ +HY C++D+LGR+G L +A +
Sbjct: 465 PNGVTFTNVFCACSHTGLVDEAESLFHQMESNYGIVPEEKHYACIVDVLGRSGYLEKAVK 524

Query: 483 LIQGIPNENGETVVPLYGALLSACRIHNNVDIGERVAKKLVNIESCDSSIHTLLANIYAS 542
            I+ +P     +V   +GALL AC+IH N+++ E    +L+ +E  +   H LL+NIYA 
Sbjct: 525 FIEAMPIPPSTSV---WGALLGACKIHANLNLAEMACTRLLELEPRNDGAHVLLSNIYAK 584

Query: 543 VDRWEDAKEVRRKMKELGVKKMPGCSSIEVDGIVHEFLVGDPSHPEMIEICSMLDRVAGQ 601
           + +WE+  E+R+ M+  G+KK PGCSSIE+DG++HEFL GD +HP   ++   L  V  +
Sbjct: 585 LGKWENVSELRKHMRVTGLKKEPGCSSIEIDGMIHEFLSGDNAHPMSEKVYGKLHEVMEK 641

[Close]
BLAST of Lsi06G009270 vs. TAIR 10
Match: AT3G22690.1 (CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1685 (InterPro:IPR012881), Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G29760.1); Has 49784 Blast hits to 14716 proteins in 280 species: Archae - 2; Bacteria - 10; Metazoa - 107; Fungi - 167; Plants - 48594; Viruses - 0; Other Eukaryotes - 904 (source: NCBI BLink). )

HSP 1 Score: 435.6 bits (1119), Expect = 6.5e-122
Identity = 223/596 (37.42%), Postives = 363/596 (60.91%), Query Frame = 0 

Query: 6   QIQSQIFRIGLEGDQDTINKLMAFCADSSLGNLHYAERIFDYIQDPSLFVYNVMVKMYAK 65
           QI   I ++G   D    N L+ F A+   G L  A ++FD + + ++  +  M+  YA+
Sbjct: 155 QIHGLIVKMGYAKDLFVQNSLVHFYAE--CGELDSARKVFDEMSERNVVSWTSMICGYAR 214

Query: 66  RRIFRKVI-LLFQQLREDELWPDNFTYPFVLKAIGCLRDVRQGEKVHGFVVKTGMDFDNY 125
           R   +  + L F+ +R++E+ P++ T   V+ A   L D+  GEKV+ F+  +G++ ++ 
Sbjct: 215 RDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDL 274

Query: 126 VCNSLMDMYSELDNVENAKKLFDEMTTIDSVSWNVMISGYVRCRRFEDAISTFREMQQLS 185
           + ++L+DMY + + ++ AK+LFDE    +    N M S YVR     +A+  F  M   S
Sbjct: 275 MVSALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMD-S 334

Query: 186 NEKPGEATVVSTLSACTALKNLQLGEEIHNYVRKELGFTTIIN--NALLDMYAKCGCLNI 245
             +P   +++S +S+C+ L+N+  G+  H YV +  GF +  N  NAL+DMY KC   + 
Sbjct: 335 GVRPDRISMLSAISSCSQLRNILWGKSCHGYVLRN-GFESWDNICNALIDMYMKCHRQDT 394

Query: 246 ARNIFDEMPMKNVICWTSMISGYINCCDLREARDLFDRSPVRDVVLWTAMINGYVQFHQF 305
           A  IFD M  K V+ W S+++GY+   ++  A + F+  P +++V W  +I+G VQ   F
Sbjct: 395 AFRIFDRMSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLF 454

Query: 306 DEAVALFREMQIRK-VKPDKFTVVTLLTGCAQLGALEQGKWIHGYLDENRIAMDVVVGTA 365
           +EA+ +F  MQ ++ V  D  T++++ + C  LGAL+  KWI+ Y+++N I +DV +GT 
Sbjct: 455 EEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYYYIEKNGIQLDVRLGTT 514

Query: 366 LIEMYSKCGCVDKSLEIFYKLEDKDTASWTSIICGLAMNGKTGDALRLFSEMELVGAKPD 425
           L++M+S+CG  + ++ IF  L ++D ++WT+ I  +AM G    A+ LF +M   G KPD
Sbjct: 515 LVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNAERAIELFDDMIEQGLKPD 574

Query: 426 DITFIGVLSACSHGGLVKEGRRFFNLMKKVYRIEPKVEHYGCVIDLLGRAGLLNEAEELI 485
            + F+G L+ACSHGGLV++G+  F  M K++ + P+  HYGC++DLLGRAGLL EA +LI
Sbjct: 575 GVAFVGALTACSHGGLVQQGKEIFYSMLKLHGVSPEDVHYGCMVDLLGRAGLLEEAVQLI 634

Query: 486 QGIPNENGETVVPLYGALLSACRIHNNVDIGERVAKKLVNIESCDSSIHTLLANIYASVD 545
           + +P E  + +   + +LL+ACR+  NV++    A+K+  +    +  + LL+N+YAS  
Sbjct: 635 EDMPMEPNDVI---WNSLLAACRVQGNVEMAAYAAEKIQVLAPERTGSYVLLSNVYASAG 694

Query: 546 RWEDAKEVRRKMKELGVKKMPGCSSIEVDGIVHEFLVGDPSHPEMIEICSMLDRVA 598
           RW D  +VR  MKE G++K PG SSI++ G  HEF  GD SHPEM  I +MLD V+
Sbjct: 695 RWNDMAKVRLSMKEKGLRKPPGTSSIQIRGKTHEFTSGDESHPEMPNIEAMLDEVS 743

The following BLAST results are available for this feature:
BLAST of Lsi06G009270 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9C8669.6e-19558.16Pentatricopeptide repeat-containing protein At1g31430 OS=Arabidopsis thaliana OX... [more]
Q9SJZ31.0e-14041.75Pentatricopeptide repeat-containing protein At2g22410, mitochondrial OS=Arabidop... [more]
Q9LSB85.4e-13741.17Putative pentatricopeptide repeat-containing protein At3g15930 OS=Arabidopsis th... [more]
O823802.4e-12937.60Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidop... [more]
Q9LUJ29.2e-12137.42Pentatricopeptide repeat-containing protein At3g22690 OS=Arabidopsis thaliana OX... [more]
BLAST of Lsi06G009270 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LWP80.0e+0090.40Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G418260 PE=4 SV=1[more]
A0A1S3CPD20.0e+0088.64pentatricopeptide repeat-containing protein At1g31430 OS=Cucumis melo OX=3656 GN... [more]
A0A5A7TXP70.0e+0088.64Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946... [more]
A0A5D3CSK60.0e+0088.64Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946... [more]
A0A6J1CTE50.0e+0086.78pentatricopeptide repeat-containing protein At1g31430 OS=Momordica charantia OX=... [more]
BLAST of Lsi06G009270 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038880251.10.0e+0093.29pentatricopeptide repeat-containing protein At1g31430 [Benincasa hispida] >XP_03... [more]
XP_031736069.10.0e+0090.40pentatricopeptide repeat-containing protein At1g31430 [Cucumis sativus] >XP_0317... [more]
TYK14505.10.0e+0088.64pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa][more]
KAA0046726.10.0e+0088.64pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa][more]
XP_008464984.10.0e+0088.64PREDICTED: pentatricopeptide repeat-containing protein At1g31430 [Cucumis melo] ... [more]
BLAST of Lsi06G009270 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G31430.16.8e-19658.16Pentatricopeptide repeat (PPR-like) superfamily protein [more]
AT2G22410.17.4e-14241.75SLOW GROWTH 1 [more]
AT3G15930.13.8e-13841.17Pentatricopeptide repeat (PPR) superfamily protein [more]
AT2G29760.11.7e-13037.60Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT3G22690.16.5e-12237.42CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1685 (InterPro:IPR012... [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 125..150
e-value: 6.8E-4
score: 19.7
coord: 460..482
e-value: 0.13
score: 12.5
coord: 228..254
e-value: 0.0045
score: 17.1
coord: 55..82
e-value: 0.22
score: 11.8
coord: 257..280
e-value: 8.1E-4
score: 19.5
coord: 531..558
e-value: 0.06
score: 13.6
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 385..433
e-value: 1.4E-8
score: 34.8
coord: 153..200
e-value: 2.6E-8
score: 33.9
coord: 284..332
e-value: 1.7E-13
score: 50.5
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 256..280
e-value: 8.2E-4
score: 17.4
coord: 389..421
e-value: 4.1E-6
score: 24.6
coord: 124..149
e-value: 6.7E-4
score: 17.7
coord: 155..182
e-value: 5.5E-8
score: 30.5
coord: 287..320
e-value: 6.1E-8
score: 30.4
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 153..187
score: 11.520384
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 386..420
score: 11.005202
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 526..560
score: 9.065053
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 285..319
score: 12.145178
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 52..86
score: 9.032168
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 228..347
e-value: 6.0E-30
score: 106.0
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 386..573
e-value: 2.7E-31
score: 111.1
coord: 62..221
e-value: 5.9E-29
score: 103.4
NoneNo IPR availablePANTHERPTHR47928:SF123OS06G0597500 PROTEINcoord: 1..601
NoneNo IPR availablePANTHERPTHR47928REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATEDcoord: 1..601

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi06G009270.1Lsi06G009270.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006338 chromatin remodeling
cellular_component GO:0000228 nuclear chromosome
cellular_component GO:0070603 SWI/SNF superfamily-type complex
molecular_function GO:0005515 protein binding