Lsi06G008440 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi06G008440
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	protein SPEAR1-like
Location	chr06: 17792351 .. 17795072 (-)
RNA-Seq Expression	Lsi06G008440
Synteny	Lsi06G008440

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAAACTGCTTTAAAGGCTTCAAGTTTTCAGATCCCCTCTTGATTCCTTAGCATATCTTTTCTTTTTTCATTGTTCTTCATTTTGGTAGAAGATTTTTGGAAATTGATCAAGTGATTTTGTGTTAATTAAATTAGTTGTGTTATTAATGGGGAGTGGTTATTTTGGGGAGCCAAGTTTAGGGAATGAAAGAGGGAGTGGATCGTCTTCGTCGTCGTCACCGTCGTTGTCGTCAAGAAGAGGGAAGAAGGGTAGTAATTCTGATAAGCAGCCAAGGCAACCACAAAGAGGACTTGGAGTTGCTCAGCTTGAGAAGATCAGATTGCATGGTGAAATTGCTTCTGCTGGTTTTCATCCCACTTCCTACACTTTCGCTAATGTAATCACTCTATCTCGTTTCAGTTTTTGTTGAGCTATGTTTATGTTGACTTATTTTAGACAAATTTTTATTGGTTTAACATGTTGTTTCAGGACCAAGAGGTAGCGAGAGTGCAGACGGGTTATGCGTCGGTACCATCGTCGACTAATTCTTCCTCGCCGTCTTATGGCTTCCGACCCTCCAATATTATGGTAAAGTACTCAACCTAATAGAGAATTTTTATAAGGGTTCTTGTTTAAGAGAGATTATTTCTGGCCTTTTTTTTTTTAAAAAAAAATGTACTTTTTTGAATTGGGTTGAAATTGGAGTTAAATTGGAGTTTAAGAAGTATATAATGTGGATTTATTTGATTTTGAGAGAGTGATTTTATGTACTAATTACTAATTAGGTAGTACTGTTAGGGCTAACCCTAGATCGAAATGCCTTCAGAATTTGATAACTAATTCGAAATCAATTCAGCAAAATCTTCATGGACTTTTCAGCAGCTTCAAAAATTAAGGAGAAATTACATTTTATTGGGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCATGTCTTATATGATGGATGTCATTGCTTACTGTTTAGAACTGATTTTAATATTGTTAAAAATCACTTTTGTGCTTTTCATATAATCATTTTAAAACATATTTTTCATCTTCACAATCAATTTTGATAGAAGAAAATCTTGTTTTGTAGGTATAAAATTAATTAAATTGAGTTTGAATGATTAACATATATTTCTTAGTAATTTTATGACTAACCATTTCAAAACAGTTTTCTAACCTGATTAATTTAAATCAATCTAAAGTGCAAATAGAAAAAATGTCATTTATATATATACTATTAGCAATTTTGTAGACCACTTATTAAGAACTTCATTCAAAATAATTTTAAATAAAAATTCTAAAATCTAAAACCTAACTCAATTAGTTTAGACATATACACTTCGACTTATAAGTGAAAAGTTTGAGTCTCTCTACCGACACATGAACTATATAAAAAAAAAAAGTTTTGAAACGTTAAAAACAATCTCGCTATCGCGAGACCGCATTAAGACCCCTTTATCGACGGGTATTATATCACTCTAGAGATAGAAATACTTTAAATTATTGTGTGTAGATTGAAATTGTTTGAGTTTCTTTGCGTGTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATTTTATGAATGTGAGCTTAATTTTAATTAATGATAATTAAGAATTAAGAATAATGTTGATTAAAATGGTGCAGTGGACAGAGAGTAGAAGGAGGAAAAGGCAAGAGAGGAGTGGAAATATGGGTCAAAATTCAGAAGCATGTGAGAGTCAAGAATTAGACTTGGAGCTTAGACTCTCAATAATC

mRNA sequence

AAAAAAACTGCTTTAAAGGCTTCAAGTTTTCAGATCCCCTCTTGATTCCTTAGCATATCTTTTCTTTTTTCATTGTTCTTCATTTTGGTAGAAGATTTTTGGAAATTGATCAAGTGATTTTGTGTTAATTAAATTAGTTGTGTTATTAATGGGGAGTGGTTATTTTGGGGAGCCAAGTTTAGGGAATGAAAGAGGGAGTGGATCGTCTTCGTCGTCGTCACCGTCGTTGTCGTCAAGAAGAGGGAAGAAGGGTAGTAATTCTGATAAGCAGCCAAGGCAACCACAAAGAGGACTTGGAGTTGCTCAGCTTGAGAAGATCAGATTGCATGGTGAAATTGCTTCTGCTGGTTTTCATCCCACTTCCTACACTTTCGCTAATGACCAAGAGGTAGCGAGAGTGCAGACGGGTTATGCGTCGGTACCATCGTCGACTAATTCTTCCTCGCCGTCTTATGGCTTCCGACCCTCCAATATTATGTGGACAGAGAGTAGAAGGAGGAAAAGGCAAGAGAGGAGTGGAAATATGGGTCAAAATTCAGAAGCATGTGAGAGTCAAGAATTAGACTTGGAGCTTAGACTCTCAATAATC

Coding sequence (CDS)

ATGGGGAGTGGTTATTTTGGGGAGCCAAGTTTAGGGAATGAAAGAGGGAGTGGATCGTCTTCGTCGTCGTCACCGTCGTTGTCGTCAAGAAGAGGGAAGAAGGGTAGTAATTCTGATAAGCAGCCAAGGCAACCACAAAGAGGACTTGGAGTTGCTCAGCTTGAGAAGATCAGATTGCATGGTGAAATTGCTTCTGCTGGTTTTCATCCCACTTCCTACACTTTCGCTAATGACCAAGAGGTAGCGAGAGTGCAGACGGGTTATGCGTCGGTACCATCGTCGACTAATTCTTCCTCGCCGTCTTATGGCTTCCGACCCTCCAATATTATGTGGACAGAGAGTAGAAGGAGGAAAAGGCAAGAGAGGAGTGGAAATATGGGTCAAAATTCAGAAGCATGTGAGAGTCAAGAATTAGACTTGGAGCTTAGACTCTCAATAATC

Protein sequence

MGSGYFGEPSLGNERGSGSSSSSSPSLSSRRGKKGSNSDKQPRQPQRGLGVAQLEKIRLHGEIASAGFHPTSYTFANDQEVARVQTGYASVPSSTNSSSPSYGFRPSNIMWTESRRRKRQERSGNMGQNSEACESQELDLELRLSII

Homology

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BLAST of Lsi06G008440 vs. ExPASy Swiss-Prot
Match: Q84X40 (Protein SPEAR1 OS=Arabidopsis thaliana OX=3702 GN=SPEAR1 PE=1 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 9.3e-16
Identity = 74/187 (39.57%), Postives = 101/187 (54.01%), Query Frame = 0


Query: 1   MGSGYFGEPS-LGNERGSGSSSSSSPSLSSRRGKKGSNSDKQPRQPQRGLGVAQLEKIRL 60
           MGS +FG P+ +G+   S S +SSS S ++RRGKK  N  ++P+QPQRGLGVAQLEKIRL
Sbjct: 1   MGSTFFGRPNVVGSSPPSSSPTSSSSSPATRRGKK--NGSEKPKQPQRGLGVAQLEKIRL 60

Query: 61  HGEIASAGF---HPTSYTFANDQEVARVQTGYASVPSSTNSSSPSYGFRPSNIM------ 120
           HGE++   F   +P+ Y     QE  R+Q GY+S+PS    SS  YGF P+ +M      
Sbjct: 61  HGEMSCNSFNSYNPSLY----PQEDVRMQGGYSSIPS---QSSAPYGFYPNMMMGVHRDQ 120

Query: 121 -------WT------------------------ESRRRKRQERSGNMGQNSEACESQELD 147
                  W                          S   +R +  G+  Q+S + E+QE+D
Sbjct: 121 YDRATMSWNPSYGILESQHSLEPNITRHFLNEDPSSTTRRSKSLGSGIQHSGSSENQEVD 178

[Close]

BLAST of Lsi06G008440 vs. ExPASy Swiss-Prot
Match: Q6IDB0 (Protein SPEAR3 OS=Arabidopsis thaliana OX=3702 GN=SPEAR3 PE=1 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 2.7e-15
Identity = 62/124 (50.00%), Postives = 76/124 (61.29%), Query Frame = 0


Query: 1   MGSGYFGEPSLGNERGSGSSSSSSPSLSSRRGKKGSNSDKQPRQPQRGLGVAQLEKIRLH 60
           MGS +FG P +G    S SS +SS S  ++RGK  + SDK P+QPQRGLGVAQLEKIRLH
Sbjct: 1   MGSSFFGRPKMGG--SSSSSPTSSSSSPAKRGKNKNGSDK-PKQPQRGLGVAQLEKIRLH 60

Query: 61  GEIASAGF------HPTSYTFANDQEVARVQTGYASVPSST-----NSSSP---SYGFRP 111
           GE     F      HP++Y     QE  R+Q GY S+PSS+      SSSP    YGF P
Sbjct: 61  GEYNCNSFNTYPSYHPSTY-----QEDVRIQGGYPSIPSSSPSFSYASSSPPPAPYGFHP 116

[Close]

BLAST of Lsi06G008440 vs. ExPASy TrEMBL
Match: A0A5A7VAB9 (Protein SPEAR1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold79G001280 PE=4 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 9.3e-51
Identity = 135/201 (67.16%), Postives = 138/201 (68.66%), Query Frame = 0


Query: 1   MGSGYFGEPSLG--NERGSGSSSSSSPSLSSRRGKKGSNSDKQPRQPQRGLGVAQLEKIR 60
           MGSGYFGEPSLG  NERGSGSSSSSSPS SSRRGKKG  SDKQPRQPQRGLGVAQLEKIR
Sbjct: 1   MGSGYFGEPSLGNNNERGSGSSSSSSPS-SSRRGKKG-GSDKQPRQPQRGLGVAQLEKIR 60

Query: 61  LHGEIASAGFHPTSYTFANDQEVARVQTGYASVPSSTNSSSPSYGFRPSNIM-------- 120
           LHGEIASAGFHPTSY F NDQE+ARVQTGYASVPSST SSSPSYGF PSN+M        
Sbjct: 61  LHGEIASAGFHPTSYAFTNDQEIARVQTGYASVPSST-SSSPSYGF-PSNVMMGFGEYER 120

Query: 121 --------------------------------------------WTESRRRKRQERSGNM 148
                                                       WT+SRR KRQERSGNM
Sbjct: 121 RSLRDGDSQYSTRWDPSNNGGILESQHFAQPNMTCYLQNPQADQWTQSRRSKRQERSGNM 180

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BLAST of Lsi06G008440 vs. ExPASy TrEMBL
Match: A0A1S3CHQ6 (protein SPEAR1-like OS=Cucumis melo OX=3656 GN=LOC103501036 PE=4 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 9.3e-51
Identity = 135/201 (67.16%), Postives = 138/201 (68.66%), Query Frame = 0


Query: 1   MGSGYFGEPSLG--NERGSGSSSSSSPSLSSRRGKKGSNSDKQPRQPQRGLGVAQLEKIR 60
           MGSGYFGEPSLG  NERGSGSSSSSSPS SSRRGKKG  SDKQPRQPQRGLGVAQLEKIR
Sbjct: 1   MGSGYFGEPSLGNNNERGSGSSSSSSPS-SSRRGKKG-GSDKQPRQPQRGLGVAQLEKIR 60

Query: 61  LHGEIASAGFHPTSYTFANDQEVARVQTGYASVPSSTNSSSPSYGFRPSNIM-------- 120
           LHGEIASAGFHPTSY F NDQE+ARVQTGYASVPSST SSSPSYGF PSN+M        
Sbjct: 61  LHGEIASAGFHPTSYAFTNDQEIARVQTGYASVPSST-SSSPSYGF-PSNVMMGFGEYER 120

Query: 121 --------------------------------------------WTESRRRKRQERSGNM 148
                                                       WT+SRR KRQERSGNM
Sbjct: 121 RSLRDGDSQYSTRWDPSNNGGILESQHFAQPNMTCYLQNPQADQWTQSRRSKRQERSGNM 180

[Close]

BLAST of Lsi06G008440 vs. ExPASy TrEMBL
Match: A0A0A0LW93 (SPOROCYTELESS-like EAR-containing protein 3 OS=Cucumis sativus OX=3659 GN=SPEAR3 PE=2 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 1.3e-49
Identity = 133/201 (66.17%), Postives = 136/201 (67.66%), Query Frame = 0


Query: 1   MGSGYFGEPSLG--NERGSGSSSSSSPSLSSRRGKKGSNSDKQPRQPQRGLGVAQLEKIR 60
           MGSGYFGEPSLG  N+RGSGSSSSSSP  SSRRGKKG  SDKQPRQPQRGLGVAQLEKIR
Sbjct: 1   MGSGYFGEPSLGNNNDRGSGSSSSSSP--SSRRGKKG-GSDKQPRQPQRGLGVAQLEKIR 60

Query: 61  LHGEIASAGFHPTSYTFANDQEVARVQTGYASVPSSTNSSSPSYGFRPSNIM-------- 120
           LHGEIASAGFHPTSYTF NDQE+ARVQTGY SVPSST SSSPSYGF PSNIM        
Sbjct: 61  LHGEIASAGFHPTSYTFTNDQEIARVQTGYGSVPSST-SSSPSYGF-PSNIMMGFGEYER 120

Query: 121 --------------------------------------------WTESRRRKRQERSGNM 148
                                                       WT+SRR KRQERSGNM
Sbjct: 121 RNLRDGDSQYSTRWDPSNNGGILESQHFAQPNMTCYLQNPQADQWTQSRRSKRQERSGNM 180

[Close]

BLAST of Lsi06G008440 vs. ExPASy TrEMBL
Match: A0A6J1L4V3 (protein SPEAR1-like OS=Cucurbita maxima OX=3661 GN=LOC111499911 PE=4 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 5.8e-45
Identity = 123/199 (61.81%), Postives = 130/199 (65.33%), Query Frame = 0


Query: 1   MGSGYFGEPSLGNERGSGSSSSSSPSLSSRRGKKGSNSDKQPRQPQRGLGVAQLEKIRLH 60
           MGSGYFGEP  GNERGSG  SSSS S  SRRG+KG  SDKQPRQPQRGLGVAQLEKIRLH
Sbjct: 1   MGSGYFGEPGFGNERGSGLLSSSSSSSPSRRGRKG-GSDKQPRQPQRGLGVAQLEKIRLH 60

Query: 61  GEIASAGFHPTSYTFANDQEVARVQTGYASVPSSTNSSSPSYGFRPSNIM---------- 120
           GEIA+  FHPTSYTF NDQEV+RVQTGY+SVPSST SSSPSYGF PSN+M          
Sbjct: 61  GEIAA--FHPTSYTFNNDQEVSRVQTGYSSVPSST-SSSPSYGF-PSNVMMGFGEYERRN 120

Query: 121 ------------------------------------------WTESRRRKRQERSGNMGQ 148
                                                     WT++RR KRQERSG M Q
Sbjct: 121 LRDGDSQYSTAARWDPSNGGILEAQHFAQPNMPCYLQNPQEEWTQTRRSKRQERSGRMSQ 180

[Close]

BLAST of Lsi06G008440 vs. ExPASy TrEMBL
Match: A0A6J1EZZ7 (protein SPEAR1-like OS=Cucurbita moschata OX=3662 GN=LOC111440921 PE=4 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 5.8e-45
Identity = 127/202 (62.87%), Postives = 134/202 (66.34%), Query Frame = 0


Query: 1   MGSGYFGEPSLGNERGSG--SSSSSSP-SLSSRRGKKGSNSDKQPRQPQRGLGVAQLEKI 60
           MGSGYFGEP  GNERGSG  SSSSSSP S SSRRG+KG  SDKQPRQPQRGLGVAQLEKI
Sbjct: 1   MGSGYFGEPGFGNERGSGLLSSSSSSPSSSSSRRGRKG-GSDKQPRQPQRGLGVAQLEKI 60

Query: 61  RLHGEIASAGFHPTSYTFANDQEVARVQTGYASVPSSTNSSSPSYGFRPSNIM------- 120
           RLHGEIA+  FHPTSYTF NDQEV+RVQTGY+SVPSST SSSPSYGF PSN+M       
Sbjct: 61  RLHGEIAA--FHPTSYTFNNDQEVSRVQTGYSSVPSST-SSSPSYGF-PSNVMMGFGEYE 120

Query: 121 ---------------------------------------------WTESRRRKRQERSGN 148
                                                        WT++RR KRQERSG 
Sbjct: 121 RRNLRDGDSQYSTAARWDPSNGGILEAQHFAQPNMPCYLQNPQAEWTQTRRSKRQERSGR 180

[Close]

BLAST of Lsi06G008440 vs. NCBI nr
Match: XP_008462751.1 (PREDICTED: protein SPEAR1-like [Cucumis melo] >KAA0062619.1 protein SPEAR1-like [Cucumis melo var. makuwa])

HSP 1 Score: 209.5 bits (532), Expect = 1.9e-50
Identity = 135/201 (67.16%), Postives = 138/201 (68.66%), Query Frame = 0


Query: 1   MGSGYFGEPSLG--NERGSGSSSSSSPSLSSRRGKKGSNSDKQPRQPQRGLGVAQLEKIR 60
           MGSGYFGEPSLG  NERGSGSSSSSSPS SSRRGKKG  SDKQPRQPQRGLGVAQLEKIR
Sbjct: 1   MGSGYFGEPSLGNNNERGSGSSSSSSPS-SSRRGKKG-GSDKQPRQPQRGLGVAQLEKIR 60

Query: 61  LHGEIASAGFHPTSYTFANDQEVARVQTGYASVPSSTNSSSPSYGFRPSNIM-------- 120
           LHGEIASAGFHPTSY F NDQE+ARVQTGYASVPSST SSSPSYGF PSN+M        
Sbjct: 61  LHGEIASAGFHPTSYAFTNDQEIARVQTGYASVPSST-SSSPSYGF-PSNVMMGFGEYER 120

Query: 121 --------------------------------------------WTESRRRKRQERSGNM 148
                                                       WT+SRR KRQERSGNM
Sbjct: 121 RSLRDGDSQYSTRWDPSNNGGILESQHFAQPNMTCYLQNPQADQWTQSRRSKRQERSGNM 180

[Close]

BLAST of Lsi06G008440 vs. NCBI nr
Match: XP_011655267.1 (protein SPEAR1 [Cucumis sativus] >KGN65092.1 hypothetical protein Csa_021514 [Cucumis sativus] >QBL95716.1 SPOROCYTELESS-like EAR-containing protein 3 [Cucumis sativus])

HSP 1 Score: 205.7 bits (522), Expect = 2.8e-49
Identity = 133/201 (66.17%), Postives = 136/201 (67.66%), Query Frame = 0


Query: 1   MGSGYFGEPSLG--NERGSGSSSSSSPSLSSRRGKKGSNSDKQPRQPQRGLGVAQLEKIR 60
           MGSGYFGEPSLG  N+RGSGSSSSSSP  SSRRGKKG  SDKQPRQPQRGLGVAQLEKIR
Sbjct: 1   MGSGYFGEPSLGNNNDRGSGSSSSSSP--SSRRGKKG-GSDKQPRQPQRGLGVAQLEKIR 60

Query: 61  LHGEIASAGFHPTSYTFANDQEVARVQTGYASVPSSTNSSSPSYGFRPSNIM-------- 120
           LHGEIASAGFHPTSYTF NDQE+ARVQTGY SVPSST SSSPSYGF PSNIM        
Sbjct: 61  LHGEIASAGFHPTSYTFTNDQEIARVQTGYGSVPSST-SSSPSYGF-PSNIMMGFGEYER 120

Query: 121 --------------------------------------------WTESRRRKRQERSGNM 148
                                                       WT+SRR KRQERSGNM
Sbjct: 121 RNLRDGDSQYSTRWDPSNNGGILESQHFAQPNMTCYLQNPQADQWTQSRRSKRQERSGNM 180

[Close]

BLAST of Lsi06G008440 vs. NCBI nr
Match: XP_038878298.1 (protein SPEAR3-like [Benincasa hispida])

HSP 1 Score: 205.3 bits (521), Expect = 3.6e-49
Identity = 132/200 (66.00%), Postives = 135/200 (67.50%), Query Frame = 0


Query: 1   MGSGYFGEPSLGNERGSGSSSSSSPSLSSRRGKKGSNSDKQPRQPQRGLGVAQLEKIRLH 60
           MGSGYFGEPSLGN    G+SSSSSP LSSRRGKKG  SDKQPRQPQRGLGVAQLEKIRLH
Sbjct: 1   MGSGYFGEPSLGNNERGGASSSSSP-LSSRRGKKG-GSDKQPRQPQRGLGVAQLEKIRLH 60

Query: 61  GEIASAGFHPTSYTFANDQEVARVQTGYASVPSSTNSSSPSYGFRPSNIM---------- 120
           GEIASAGFH TSYTF NDQEVARVQTGYASVPSST SSSPSYGF PSNIM          
Sbjct: 61  GEIASAGFHHTSYTFTNDQEVARVQTGYASVPSST-SSSPSYGF-PSNIMMGFGEYERRN 120

Query: 121 -------------------------------------------WTESRRRKRQERSGNMG 148
                                                      WT+SRR KRQERSGNMG
Sbjct: 121 LRDGDSQYSTAARWDPNNNGGILESQHYAQPNMTCYLENPQAEWTQSRRSKRQERSGNMG 180

[Close]

BLAST of Lsi06G008440 vs. NCBI nr
Match: XP_023007409.1 (protein SPEAR1-like [Cucurbita maxima])

HSP 1 Score: 190.3 bits (482), Expect = 1.2e-44
Identity = 123/199 (61.81%), Postives = 130/199 (65.33%), Query Frame = 0


Query: 1   MGSGYFGEPSLGNERGSGSSSSSSPSLSSRRGKKGSNSDKQPRQPQRGLGVAQLEKIRLH 60
           MGSGYFGEP  GNERGSG  SSSS S  SRRG+KG  SDKQPRQPQRGLGVAQLEKIRLH
Sbjct: 1   MGSGYFGEPGFGNERGSGLLSSSSSSSPSRRGRKG-GSDKQPRQPQRGLGVAQLEKIRLH 60

Query: 61  GEIASAGFHPTSYTFANDQEVARVQTGYASVPSSTNSSSPSYGFRPSNIM---------- 120
           GEIA+  FHPTSYTF NDQEV+RVQTGY+SVPSST SSSPSYGF PSN+M          
Sbjct: 61  GEIAA--FHPTSYTFNNDQEVSRVQTGYSSVPSST-SSSPSYGF-PSNVMMGFGEYERRN 120

Query: 121 ------------------------------------------WTESRRRKRQERSGNMGQ 148
                                                     WT++RR KRQERSG M Q
Sbjct: 121 LRDGDSQYSTAARWDPSNGGILEAQHFAQPNMPCYLQNPQEEWTQTRRSKRQERSGRMSQ 180

[Close]

BLAST of Lsi06G008440 vs. NCBI nr
Match: KAG6587980.1 (Protein SPEAR1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7021872.1 Protein SPEAR1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 190.3 bits (482), Expect = 1.2e-44
Identity = 127/202 (62.87%), Postives = 134/202 (66.34%), Query Frame = 0


Query: 1   MGSGYFGEPSLGNERGSG--SSSSSSP-SLSSRRGKKGSNSDKQPRQPQRGLGVAQLEKI 60
           MGSGYFGEP  GNERGSG  SSSSSSP S SSRRG+KG  SDKQPRQPQRGLGVAQLEKI
Sbjct: 1   MGSGYFGEPGFGNERGSGLLSSSSSSPSSSSSRRGRKG-GSDKQPRQPQRGLGVAQLEKI 60

Query: 61  RLHGEIASAGFHPTSYTFANDQEVARVQTGYASVPSSTNSSSPSYGFRPSNIM------- 120
           RLHGEIA+  FHPTSYTF NDQEV+RVQTGY+SVPSST SSSPSYGF PSN+M       
Sbjct: 61  RLHGEIAA--FHPTSYTFNNDQEVSRVQTGYSSVPSST-SSSPSYGF-PSNVMMGFGEYE 120

Query: 121 ---------------------------------------------WTESRRRKRQERSGN 148
                                                        WT++RR KRQERSG 
Sbjct: 121 RRNLRDGDSQYSTAARWDPSNGGILEAQHFAQPNMPSYLQNPQAEWTQTRRSKRQERSGR 180

[Close]

BLAST of Lsi06G008440 vs. TAIR 10
Match: AT2G20080.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G28840.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 84.7 bits (208), Expect = 6.6e-17
Identity = 74/187 (39.57%), Postives = 101/187 (54.01%), Query Frame = 0


Query: 1   MGSGYFGEPS-LGNERGSGSSSSSSPSLSSRRGKKGSNSDKQPRQPQRGLGVAQLEKIRL 60
           MGS +FG P+ +G+   S S +SSS S ++RRGKK  N  ++P+QPQRGLGVAQLEKIRL
Sbjct: 1   MGSTFFGRPNVVGSSPPSSSPTSSSSSPATRRGKK--NGSEKPKQPQRGLGVAQLEKIRL 60

Query: 61  HGEIASAGF---HPTSYTFANDQEVARVQTGYASVPSSTNSSSPSYGFRPSNIM------ 120
           HGE++   F   +P+ Y     QE  R+Q GY+S+PS    SS  YGF P+ +M      
Sbjct: 61  HGEMSCNSFNSYNPSLY----PQEDVRMQGGYSSIPS---QSSAPYGFYPNMMMGVHRDQ 120

Query: 121 -------WT------------------------ESRRRKRQERSGNMGQNSEACESQELD 147
                  W                          S   +R +  G+  Q+S + E+QE+D
Sbjct: 121 YDRATMSWNPSYGILESQHSLEPNITRHFLNEDPSSTTRRSKSLGSGIQHSGSSENQEVD 178

[Close]

BLAST of Lsi06G008440 vs. TAIR 10
Match: AT4G28840.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G20080.1); Has 71 Blast hits to 69 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). )

HSP 1 Score: 83.2 bits (204), Expect = 1.9e-16
Identity = 62/124 (50.00%), Postives = 76/124 (61.29%), Query Frame = 0


Query: 1   MGSGYFGEPSLGNERGSGSSSSSSPSLSSRRGKKGSNSDKQPRQPQRGLGVAQLEKIRLH 60
           MGS +FG P +G    S SS +SS S  ++RGK  + SDK P+QPQRGLGVAQLEKIRLH
Sbjct: 1   MGSSFFGRPKMGG--SSSSSPTSSSSSPAKRGKNKNGSDK-PKQPQRGLGVAQLEKIRLH 60

Query: 61  GEIASAGF------HPTSYTFANDQEVARVQTGYASVPSST-----NSSSP---SYGFRP 111
           GE     F      HP++Y     QE  R+Q GY S+PSS+      SSSP    YGF P
Sbjct: 61  GEYNCNSFNTYPSYHPSTY-----QEDVRIQGGYPSIPSSSPSFSYASSSPPPAPYGFHP 116

[Close]

BLAST of Lsi06G008440 vs. TAIR 10
Match: AT2G20080.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G28840.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 77.8 bits (190), Expect = 8.1e-15
Identity = 66/158 (41.77%), Postives = 91/158 (57.59%), Query Frame = 0


Query: 1   MGSGYFGEPS-LGNERGSGSSSSSSPSLSSRRGKKGSNSDKQPRQPQRGLGVAQLEKIRL 60
           MGS +FG P+ +G+   S S +SSS S ++RRGKK  N  ++P+QPQRGLGVAQLEKIRL
Sbjct: 1   MGSTFFGRPNVVGSSPPSSSPTSSSSSPATRRGKK--NGSEKPKQPQRGLGVAQLEKIRL 60

Query: 61  HGEIASAGFHPTSYTFANDQEVARVQTGYASVPSSTNSSSPSYGFRPSN----------- 120
           HGE++   F+  + +      V R Q   A     T S +PSYG   S            
Sbjct: 61  HGEMSCNSFNSYNPSLYPQMGVHRDQYDRA-----TMSWNPSYGILESQHSLEPNITRHF 120

Query: 121 IMWTESRRRKRQERSGNMGQNSEACESQELDLELRLSI 147
           +    S   +R +  G+  Q+S + E+QE+DLELRLS+
Sbjct: 121 LNEDPSSTTRRSKSLGSGIQHSGSSENQEVDLELRLSL 151

The following BLAST results are available for this feature:

BLAST of Lsi06G008440 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q84X40	9.3e-16	39.57	Protein SPEAR1 OS=Arabidopsis thaliana OX=3702 GN=SPEAR1 PE=1 SV=1	[more]
Q6IDB0	2.7e-15	50.00	Protein SPEAR3 OS=Arabidopsis thaliana OX=3702 GN=SPEAR3 PE=1 SV=1	[more]

BLAST of Lsi06G008440 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VAB9	9.3e-51	67.16	Protein SPEAR1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold79G0...	[more]
A0A1S3CHQ6	9.3e-51	67.16	protein SPEAR1-like OS=Cucumis melo OX=3656 GN=LOC103501036 PE=4 SV=1	[more]
A0A0A0LW93	1.3e-49	66.17	SPOROCYTELESS-like EAR-containing protein 3 OS=Cucumis sativus OX=3659 GN=SPEAR3...	[more]
A0A6J1L4V3	5.8e-45	61.81	protein SPEAR1-like OS=Cucurbita maxima OX=3661 GN=LOC111499911 PE=4 SV=1	[more]
A0A6J1EZZ7	5.8e-45	62.87	protein SPEAR1-like OS=Cucurbita moschata OX=3662 GN=LOC111440921 PE=4 SV=1	[more]

BLAST of Lsi06G008440 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008462751.1	1.9e-50	67.16	PREDICTED: protein SPEAR1-like [Cucumis melo] >KAA0062619.1 protein SPEAR1-like ...	[more]
XP_011655267.1	2.8e-49	66.17	protein SPEAR1 [Cucumis sativus] >KGN65092.1 hypothetical protein Csa_021514 [Cu...	[more]
XP_038878298.1	3.6e-49	66.00	protein SPEAR3-like [Benincasa hispida]	[more]
XP_023007409.1	1.2e-44	61.81	protein SPEAR1-like [Cucurbita maxima]	[more]
KAG6587980.1	1.2e-44	62.87	Protein SPEAR1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7021872.1 Pr...	[more]

BLAST of Lsi06G008440 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G20080.1	6.6e-17	39.57	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT4G28840.1	1.9e-16	50.00	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT2G20080.2	8.1e-15	41.77	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..54
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 87..134
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 13..32
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 87..108
None	No IPR available	PANTHER	PTHR33388:SF18	PROTEIN SPEAR1	coord: 1..120
IPR040356	SPEAR family	PANTHER	PTHR33388	OS01G0212500 PROTEIN	coord: 1..120

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi06G008440.1	Lsi06G008440.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0003700	DNA-binding transcription factor activity