Lsi06G007940 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi06G007940
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionPentatricopeptide repeat-containing protein
Locationchr06: 16576448 .. 16589885 (-)
RNA-Seq ExpressionLsi06G007940
SyntenyLsi06G007940
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTATCTTTTGGTCATTCGTTTTGATCAACTGCGACACTCGAGGGTCAGTATTCTTGACGATTGAATCAATGTAATTTCAAACATGTAAGGATTTGAAACTAGAACCTCAGTATGCAGTGACCGTGAAAAAATTGTTGAAAGGGTTCAATGTGTGCCTTCTCATATATGTTGATGGATAAACATATAACAAAAGAAATTTCTTCCAACGTATGAAAATTTTCAAGTTTTCTTTTGTCTTTACTCTTATGCTTCCAAATTAATATAATAATATGTATTTGAGAGCTATGTGTAGCTAAACTTTTAGTTTTAGGGTGTTTGATGTTTTAATTATGAATTTAAGTTAATGGTTTAGTGTTTTTCATGGATGTATTGAATGATATGTTTTTCAATACTATTGTGCTTTATTTTTCCTTGATTGATCATCAATGAATGTTAGGTTAGATGTGTGATTGAAGGGTTGTATGTATAATTGGATCTATAGTATTGAACATTTAATCGATTTTTCATGAAAATAGCTAGATTATTAAAGGAAGTTGTTGACGATTGTTCTTAATGCTATGTTTCTTCACTTGATTTCATGAAAATAGTAATCAATTAGGTTACATAAGAAAGGGTTGTCTTTGTGGGAAGATAATTCGGATAATAGTTTCTAGACTTAAACATATCGTTTACTTATAATTCCTTGGAAACCCTAAAACTTAACTTAATGAAGTAATTAATGATATCTACACCCTAGAACACTTTGATCTCTTAATTTTCACTTGCTTTTACTTTCTTAATGTGCTTTTCTCAAAACAAAACTCGAAGTTGATTCCTTAACTAAAGTCGACTCAATTCTTGAATAGCTTAGTATTTGAATCGTAACAAGGTCCTTAGTGGATCGATACTCAGACTTAACCGTTTTATATTATAACTTGACTCGTGCAGTTGCGAAAATCGCGCATCAAGTTTTTGACGCCGTTGTCGAGGACTAAGAAACGACTTATTTTGCTAAATATTTAAAGAATTGATAGATTTTAATTTAAGGTGTATTTTTACTTTTTTTTCTTTTCTTTAGATTGGTTGTAATTGCTTCCGGTGTATGCCTTGCTACAATACTAATCTTCTTTCTTTTGATCTCAAGATTGATAGAACTTACAGGAGAAATCTAAGAACTCAAGAAAATCCCACCAAAGAGATGGCGAAGGAAGCACCAAAGGCGATCCGAGATTACTTCCAACCAACGCTACCGGCGAATCAACTCGGACTTGCAAACGCCCCCATAAATGTCAACAACTTTGAACTCAAACCGAGGTTGATCCACATGCCTAGAGACCTTTTCTTTAGAGGACGTTCGACTGAGGACTCTTACAAGCATTTACGCTCTTTCTTAGAGATATGCGGAATGGTAAAGATTAACGGTGTTATTAGCGATGCTATTAAACTAACACTTTTTCCATTTTCTTTACAAGATCGAGCAAAGGAATGGTTAGAATCCATACCGCCGGAGAGCATAACTACTGGGATGCATTGGCCCAAGCATTTTTTAACAAATATTTTCCACCTGCTAAATCACAAAGATTGAGGACGGAGATTGGCACATTCCGTCAGCACGAAGATGAGCTCCTTTATGAGGCGTGGGAGAGGTACAAGAACCCCTTGAGAAGATGCCCTCAACATGGGTATTCAGATTGGTTGCAAATCCAATTATTCTACATCGGCCTATCAAGCAACACCAAATCTATTTTGGATTCTACTGCCGGAGGGTCTATATTCTCGAAAAACCGTCAATGAAGCATACACAATATTAGAGGACTTGGCCAATATATCATACAATTAGCCATGTGAAGGATCATCTTCAACCAAAATTGTCGGCATTCATGAGGTGGATGAGGTAAGCTCTTTAAAAGCTCAATTGGCTTATCTTACTAATGCTTTGTCTAAATTATCTCAAGGAGGCCAATCGCAAGCTAATCCACCATCCATAGCCTCTTTAGTAGCTATGGCCAATCAAACCGGATAAGGTGAGATGGAGATGGCCAACTATGTAGATCGAGGACAATTTAGAAGCCAACAACAATACCTCACTCACTACCATCCCAACTTGAAGAATCATGAAAAATTCTCATATGCAAACAACAAGAATGCGTTGCAAGCTCCTCAAGGTACAAAAACATCATCTCTAGAGGACGTAATGATTGATTTTGTCAAGGAATCAAGATCAAGCAGGACTACATTAGAGAATTCGGCGCAAACCATAGCAAGCATGGTGCAAGCTTAAGAGAAGGCACTTAAAAGCTTGGAGGTGCAAGTGAGTCAAGTTGCTACCTCCCTTCATACATTGTAGAAAGGTAAATTCCCAAGTTGCCCCGAGAAGAACCCTAAAAAGGAATGCAATGCAATTACTCTAAGAAGTGTTAAAGAATTGAACAAGCACATGGTGATCGAGGATGATGAACAACCTCAAGAGGAAGATGAGCATACACTTGCCAATGAGCCCATCAACGAGCAAGTAGCACCAAAAGAAAAGGAGGAAAGGGAAAAACAGGGAGTACTTCTAATTCTCTACTTTTTATTCCTAATACTCTTCCTTATCCTCCAAGGTTTCAAAAGAAAAAGATTGATGCTTTATTTTTTAAATTCTTAGACATTTTCAACAAGTTATAAATTAACATCCCTTTTGTAGAGGCATTAGAACAAATGCCTAAGTATGGAAAGTTTATGAAGGATGTCTTGTCTAAGAAACATAAATATGGAGATTATGAGATGGTGGTACTAACGGAGGAATGTAGTGCGGTGCTACAAAGAAAATTGCCTCAAAAGTTAAAGGATCTAGGGAGTTTTTCTATTCCTTGTCACTTAGGCAATAATTCGGTTACAAAAGTACTATGTGATTTAGGAGCTTCCATTAATTTCATGCCTTTGTCTATTTTCAGGAAGCTTGACGGAGGAGAGGTGCAACCAACCACTATATCTTTGCAAATGGCCGATAGATCGATTGTTCATCCATACGACATTGTGGAGGATGTGTTGGTTAAGGTAAACAAGTTCATCTTCCCGGCGACTTTGTAGTGCTTGATATGGAGGAAGATGCCAACATTTGCATAATGCTTGGGAGACCATTCTTGGCCACCGGATGAGCCCTCATCGATGTGCAAGATGAAAAACTAACTATTAGGCTAATGATGAGAAGGCAACATTTGACATTTACAAAACCCTTAAACATGCCGATGTGGTAAGTCTTGACTCATCTACACCAAGTAAGTCGGTAAATTCTTCTCCTCCTCCTAGCAATGTTTCTTCACATGTTGCCTCGTCTTTTGAACCTAATTATAAGATTAATAGCATGCCCAATTCTCTTGATAGTAATAGGAAGCATATTACTAGTTTTGATAATTTTCCTAACACTTGCATGCCCTTCAAACCTATGAATGAACAAGAGAAATTAATGGAGAAGTATGTTAAGGATTTTATGGAAAATCCGGTAATATCTCCTAAGGATGATTCTTTAAGATTGTTGGATTATGTTAGAAAAGGTGATGTTGAGATACTTGAAAATGACTTGATAACGGTCAAGATTTCTATGAATGATTATTGTTGTGAATGTCCTATGGGCGAAAACTTCAGGTTTCAGGGTGCTCGTTGAATGGAGTAACAAAACTACCTTGGGATCCAACATGATTTGTGAGCCCGGTCTAGCTAGACCTTAAATATATCGCTTCTTTGGAGGCAACCCAAGTTTATTGCTTTCTTTATTTTTAGCATTTTTTTCATTTGTTTGAATTTTGTGGGAGCCACTCATATGCCTTCAAAGTTTTTCAGGAATTTTTGTTGTGAAAAGTACTTAATTCGCCAATCCTGTTTGGTGGACTCCTGCTCATTCTCAGGCTTGTGTTTTCTTTTCTATCATGCATTGAGAACAATGCATAATTTTAAGTTTGGGGTGGGAGGCGTCTTTAGTACTTTTATTTGATTTTATCCTGCTATGCATGCTAAGTTGGTTTTAATGAATTCTTTATGCATGATAATGTGAATTGAAATTTTGAAAAAAAAATTTCAATTTCGATCTTTAAATAATGATGGGAATAGTTCATGTTTGTGTGTTTTGATGTTGATTGGCTATGATGAGATTCGAATATGCATGATGGACATTTATTGTGGAAATAGGATAGCATTATCTTGAGCTATGATCTATTTAAGTCCCTCTTTGAATTTCCCATATTTTGAGCATGTAGCTACTTTGATTTAGAAACTTTAACTTAGAAAATGATTAAGTTGAGTGTATTTGGTTGTCAGCTCGAAAGGCCCCACCAGTTAAAGAGTTGAAGTGCATGATAGTTTGTAATGTTAGACTAAGAGGAAAGAAAAGATTATTTTGCCTTTGAAAAGAAAAAAGTGTACACTTAAAGCATGAGTTTACTTGAATATCTCTTTACAAAAAATTTTTGATTAAACTTGTAACGTTTATGCATAGATGGGGGTGAAAAGAGTTGTCTTTGTTGTGATTAGTTAGGAAGACTGGGAATTAACTAGGTACGAGTCCCTACAGTGAATATGTGAAAGCTAGTGCCCCTAGGTAAAAGAATGCAAGTTTAAAAGAGCGCGTTGAAATTGATACTTAAGGCACCTCAGTGGACATATTACTTTCTTGAATTGTATGAATTCTTGATGATTGGTGCATGAGCTAGAGTAGGGGGAAAACTAGAGAAGCTCTCTTAAGTCCTACTTTGAGTTCTTGTTTTTTATTTAAGGGAGGCTTGCACGCACACACATGGGAGATGATTAGATTTGACCTTGAATGTTCACAATAATATAAAAATGTTTGAATATTTCTCCTTAAGTTCCAAATATGTTATTCTCTGAGGCATTAGTCAACAACATACTTATTTTGAATTCCCTATGGTTTAGTTTTATGTTTTCTCGGGACTAGCAAATCTCTAAGTTTGGGGTGGTGGAACACACCTAAATTGTGCGTTAATTACTCTTTATTTAGAAGTATTTTTGGTAGATTTGATATGTTTGCTAGTGGATTTCAGGTTGTAATAAAGAAAAATGGGTTTTGGAAGCAAAGGAATCAAACCGAGTTAAAACCGGAGAATAGAAGCTCAAAAACCTTAGAAAAACAGGTAACATAGAGCAAGAGCATCGCTACACTGCCTCTTTACGCTCAAGACTCGAGAGCCCTTATTTTTGCACACTCGAGAGCGTTGCGACGCTGGGGCAGCGTAGCGCTATGATGTGATAAAATTAGACCAGTGTCACGACGCTTTTCCGTAGCGTAGCGACGCTGGCTTTCCCTTTTCAATTAGGAGATTTTTTAGGAAATCTTTTCCTATATATTGGGGAGGTCTTTGGAAACCCTAAGGACGAAATAGCAGAGCCTCAAAGTGAGATTTTGACATTATAAAAGAGGAAATTGATCAGAGAAGAGTTGGAAGCCATTCGAGATCTCGAGGTGCCGACCGAGCGAAAATCGAAGGAGTTCAACGACAGGGAGCGATTTGAGAGATCTTCTTCCTAAGTTTTCTTTTCTCTTTACTCTTATGCTTCCAAATTCATATGATAATATGTATCTGAGTGTGACTAAACTCTTAGTTTTAGGGTGTTGGATGACTTAATTATGAATTTAAGTTATTGGTTTAGTGTTTTTCACGGATGTATTGAATGATATGTTTTTCAATACTATTGTGCTTTATTCTTCCTTGATTGATCCTCAACGAATGTTACGTTAGATGTGTGATTGAATGGTTGTATGTATAATTGGATCTATAATATTGAACCTTTAATCGATCTTTCATGATCACATTTATTGAGGCATTTTACAAACATTATTTGATTACGATTGAGGCTCCTTACTTTGCAATGTTTACTTTGCATTATCTTATTATCGTTACCTCTACCTTTACTATTTAGGATCAATCGATAAAGGTAAAGGTAACAGTAAGAGTGACTGATTCATAATTCTCCTACTGTAACACTAACAGTAAGTAACAGTAATGATAAAGGTAGTGGGTCCCACGTAATATTCAAACACAATCAGATTGAGCACCCTCTGTTCCTCAACCAGATTGGGCGTTTTAATTATAGATTAGGAGGCAAACCCCACAGTTCACTATGATTACGTAACATAGGTAAACAACAACAAACGTAATTAAATGAGACCCATTTTTCAGATTACTATTGATGGATTACGTTCCACCTAAGATAAACGTGATGTTAATCCAAAAAACAAGTAATAAAAAGCAGCAAGGTGGGTTTCAAACCTAGAATGTCCAAGGGGTAGACACTTTCAACCATTATTTTTCGTCTTCATAAGTATTATTATATGAATAAAGGAATTAAGAGGGGCTCAAGCCTTTGAGCCTTAATTAAATTGACTATGAACTCAATTGACATAAAATATCTATTAATAATCAAGAAATTTATGGTTCAAATCTTTATTCCTTATTTTACTAATATATAAAATTAAATTTTTTTTAAAAAATTGTCATAATCCTGAATCCTTAATGCACCGTTATTATTATTGTTAAATGAGAAATTTTGGACCAATCACAAATTGTCACATTATTTCTCATATTAACGGCAAAATAAGAAACAATTAAATTTGGGACTAATTAAAAGTTACATGTGTCCTAAATTCAAATTGAAGACGTAAATTGGCAAATCTCAATGGTGCCACACGTTTTCGTCTTCACTGTTGGATCAAATTAATTATTTTTGGTTCAATTAATTATTAACGTTTGAGCTAAAGTTCAATTAAGTCCAAAAATAAATTCAATTTGGCCTAAAGGCCAACAAATGCCCAAATCCAATTAGCTGGGCCCAAGGGTTAGGTCCATGGACCAGCCCAGCCCATACTCACCTGAGAACTCTATAAATAGAGGAGTTTTCCTTCATTTGAAAGGTTCAGAAAATTTACACTCCGTTTGTTTACTTTCTTGTGTAGCGAGGTGACTTCGGACAGCGTGGCGACTTCCGTTTGTTTACTTTCTTGTGAAAAAAAATTGTTTTGGTTTTCTTATTTTTTGTTGGTGAGAAAATTTGGTTTGAGTAACTAAGAAAAGTTATACTTCTTTTACAAATAAATGTTTATTGATTTTTGCTAGTTTTTAGAGTATTATTTATTATTTATTGAATTTTGTTGTTCTTTTTTGTTTTTTTCTTCTTCGGGAGATATTCGCTATAAGTTGGTTATTATCTTAGTTTTTAGATCTTTGATGTTTCTGATTTTGGTAGGGATTTTTAGGTAATTTTGGTGGGTTTAGACATGTTTTAGATAGTTTTTTTTTATCAACATTTCGCAATATCTCGCAATAACTTTCCAACTTCTAAACTTGAAATGCTCAACCCCAAGTCATTTTTATATGTGTTTTAGGTGATTTAGGGTGAGTTTGGATATCTTTTAGATAATTTTTTAGCTACCGTTTTTATATTTTTTTTATCTTGCAACGTCTCACAATATCTCGCAACAACTTTCCAACTTTCAAACTTGAAACACCCAAAACTAAATAATTTTTATATGTGTTTTAGGTGATTTAGGGTGGGTTTTTGCTATGTTTTAAATAGTTCTTTAGCTACTGTTTTTTATCTCGCAACAACTTTCCAACTTCCAAACTTACAACGCCCAAATTCAAATCATTTTTATATGTGTTTTAGGTAATTTAGGTAGATTTGGACATGTTTTAGATAGTTTTTTTAGCTACTGTTTTTTTATCTCACAATATCTAGCAATCATTTGAAAGTTGTTGCAAGATGTTGCGAGCTAAAAAATAGTAGCTAAAAAACTAGCAAAAAAATGTCCATACCCATTGTAATATTGCCTAAAACATCTATAAAAAGGAGCTCTAATTAAGTATTTCAAGTTTGAAAGTTGTTGCGAGATAAAAAATAGTAGCTAAAAAATTAGGAAAAAAATTTCACACTCACCCTAAATCACCTAAAACACCTATAAAAATGAGTTCAAATTGAGAGTTTTAAGTTTGGAGAATACCCGATGTATTGAAACTAATTCTGCAAGTGTCTTGAAATTATCTTACAAGAAATGAATTCTGAAAACATCTTACAAAAAGTATAAAATTGGTTTGGGGATAAGCATTTCAAGTTTGGAGGTTGCGAGATAGTTACGAGATGTTCACATGGTAAAAAACCGCACCTAAAAACATGTTAAAAAGATGTGTAAAACCACCCTAAATCACCTAAAAAACTATAAAATTGATTTGGGGTTAAACATTTCAAGTTTGGAAGTTGCGAGATAGTTGCAAGATGTTTGCGAGATGGTTGCAAGATAAAAAAACATTGCCTAAAAACATGCTAAAACATATCTAAAATCATTTTAAATCACCAAAAACACATATAAAATTGATTCGGGATGAGACATTTCAAGTTTGGAAGTAGCGAGATGGTTGCAAGATAAAAAACAGTAACTCGCAACAATTTTTAAACTTGTTTTTTAGTGAGATAAAAAACAGCGAGATTGTTGCAATATGTACATTTTTAGCTAGTTTTTTAGGTACTATGTTTTATCTTGCAACATCTCGCAACATCTTGTAACAATTTCCAAACTTGAAAGACTCAACTCTAACTCATTTTTATAGTTGTATTAGGTGATTTAGGGTAGGTATGAACATTTTGAGCTATTAAATATTAAATTAATGTGTTGGAATTAAGGTGGGTATAATATTAAATATTAAATTAATTTTGAGTGATTATCATTGATTTCTTCAAACAATATATAAATGAAACTGCGAGAAAAAATGAGCTAAATTTTTTCTGCGTTTTTTAGCCTTTCTTTAAAAGTGAGTTAGAGTTGAGCGTTTCAAGTTTGGAAGTTGTTGCGAGATGTTGCAAGATAAAAAAAAAAAAAAAAAAAAATATCAAGAAAATTAGCTAAAAAATGTTCATACTCATCATAAATCACCTAAAATACATATAAAAGTGAGGTAGAATTGAGTGTTTCGAGTTTGAAAATTGTTGCGAGATGTTGCAAGAAAAAAAAAAAAAAAAAAACTATCAAGAAAATTAGCTAAAAAATGTTCATACTCATCATAAATCACCTAAAATACATATAAAAGTGAGGTAGAATTGAGTGTTTCGAGTTTGAAAATTGTTGCGAGATGTTGCAAGAAAAAAAAAAAAAAAAAAACTATCAAGAAAATTAGCTAAAAAATGTTCATACTCATCATAAATCACCTAAAATACATATAAAAGTGAGGTAGAATTGAGTGTTTCGAGTTTGAAAATTGTTGCGAGATGTTGCAAGAAAAAAAAAAAAAAAAAAACTATCAAGAAAATTAGCTAAAAAATGTTCATACTCATCATAAATCACCTAAAATACATATAAAAGTGAGGTAGAATTGAGTGTTTCGAGTTTGAAAATTGTTGCGAGATGTTGCAAGAAAAAAAAAAAAAAAAAAACTATCAAGAAAATTAGCTAAAAAATGTTCATACTCATCATAAATCACCTAAAATACATATAAAAGTGAGGTAGAATTGAGTGTTTCGAGTTTGAAAATTGTTGCGAGATGTTGCAAGAAAAAAAAAAAAAAAAAAAACTATCAAGAAAATTAGCTAAAAAATGTTGTCATCCTAAATCACCTAAAATACATATAAAAGTGAGTTAAAATTGAGCGTATCAAGTTTGGAAGTTGTTGCGCGAGATGTTACGAGATGCTGCGAGATAAAAATAGTACCTAAAAAACTAGCTAAAAGATGTCCATATCTATCCTAAATCACCTAGAATACATATAAAAGTAAGTTAGAATTGAGTGTTTCCAGTTTCAAAGTTGTTGCGAGATGTTGTGAGAAAAAAGAGTACCTGAAAAATTAGCTAAAAAATATTCATATTCATCCTAAATCACCTAAAATACATATAAAAGTGATTTAGAATTGAGTGTTTCAAGTTTGGAAGTTGTTGCGAGATGCTGCAAGATGTTGCGAGATAAAAAAAAAAGTACCTAGAAAATTAGCTAAAAAATGTTCATACTCATCATAAATCACCTAAAATACATATAAAAGTGAGGTAGAATTGAGTGTTTCAAGTTTGAAAATTGTTGCGAGATGTTGCAAGATAAAAAATAATACCTAAAAAAGTAGCTAAAAAATGTTCATATCCATCCTAAATCACTTAGAATACATATAAAAGTGAGTTAGAATTGAGTGTTTTCAGTTTGGAAGTTGTTGCGAGATGCTACGAGATGTTGCTAGATAAAAAAAAATACCTAAAAAATTATCTAAAGAATATTCATACTCATCCTAAATCAATGTTGACACATATAAAAATGAGTTAGAGTTGAGCGTTTCAAGTTTGGAAGTTACGAGATGTTGCGAGATACAAAAAAATACCTAGAAATTAGCTAAGAAATATTCATACTCATACTAAATCACCTAAAATACATATAAAAGTGAGTTAGAATTGAACATTTCAAGTTTGAAAGTTGTTGCGAGATGTTGCAAGATAAAATACAGTACCTAGAAAATTAGCTAAAAAATGTTCATACTCATTCTACATCACATAAAACACATAAAAGTGAGTTAGAATTGAGTGTTTCAAGTTTGGAAGTTGTTGGGAGATGCTGCTAGATGTTGTGAGAGATAAAAAAAAATAAAAATAAAAAATAAAAAATAAAAAAAAATAAAAAACTAGTTAAAGAAATGTCTACACCCATCCTAAAACACCTAAAAGATCTATAAAGAGAGAAAAACTAAATTGTACAAATAAGAAAAAAAAATTAAACTAACTCAACTCATAAAAAAATCTATAACAATAAAAATAATCATAAAAAAAAATATACTACAAAGAAAATGAGATTGAGAGAATGTTGAAGTTGTTAATAATGTTGGAGCATGAAAAGAGAGTTTGGGAGAATAGAAATTAGAAAGAAGTTATAGAGAAATTAGAGAAAATAGGAGAGAGAATGAAGAAAGTCACTAAATGTGTGTTATTTAATAACAAAAAGTTCTTTCCTCACTCAAAGATATAGGGGACATTTCACATCTCATTTGTCCCATAACTCTTTCTTTTTAAAACGTAATCCCAAAACTCTTTAAACCCCTTAAAAATGTACTACAATTTCACCATAATTATTTTATCTTATTTCGTTCATTCAATCAATAGAGATATTTTAGTGAGGAGGTGAGATGTAAAGCCAAGGGCCGTAAATGAATCAACTAATTCTCTCATCCCCTTCTTTCTCAGGCTCCGGCCATTCCCATTTGAATCTCCAACACACCCAACAAATCCATGCCCATTTCATCAAAACACAATTCCATAAACCTCACCCTTTCTTCTCTCAATCCCACTTCACCCCGGAAGCCAATTACAATCTCCTCATTTCATCTTACACCAACAACCAACTCCCACAAGCTTCTTTCAGATTGTACCTCCATATGCGAACGACTGATCCTGCTGCTGCACTTGACAACTTCATTTTGCCTTCACTTCTCAAAGCCTGTGCTCAGGCTTCCTGTGGGGTTTGGGGCAGGGAACTCCATGGTTTCGCCGTTAAGAACGGGTTTGCCACAGATGTTTTTGTGTGCAACGCTTTGATGAACATGTATGAGAAATGTGGGAGCTTGGTTTCTGCTCGCTTGGTGTTTGACAAAATGCCCGAGAGAGATGTTGTCTCTTGGAGTACTATGCTCGGGTGCTATGTGCGAAGCAAATCTTTCGGTGAAGCGCTTCGACTCGTAGGAGAGATGCATTTTGTGGGAGTGAAGCTTAGTGGTGTTGCTTTGATTAGCGTGATTGGTGTATTTGGAGAACTCTTGGATATGAAGTCGGGGAGGGCGGTTCATGGTTACATTGTGAGAAATGTTGGTGATGTGAAGATGGAAGTTCCTTTGACAACTGCGTTGATCAATATGTATTGCAAGGGTGAGTGTTTGGAATCAGCACAGAGGCTTTTTGACAGTTTATCTCAGAGAAGTGTTGTTTCTTGGACGTCAATGATAGCAGGTTGTATTCACAATTGCAGATTAGTTGAAGGGGCAAAGAACTTTAATAGAATGCTTGAAGAAAAAATATTTCCTAATGAGATTACATTGCTCAGTTTGATTACAGCATGTGGTTTTGTGAGAACCTTGGATTTGGGCAAATGTTTGCATGCGTATCTGTTAAGAAATGGGTTTGGTATGTCTCTGGCTTTGGCCACTGCTCTCATAGACATGTATGGAAAATGTGGGCAAGTTGGATATGCCAGAGCTCTTTTCAATGGTGTTGAGGAAAAAGATGTCAAGATTTGGAGTGCTATGATATCCACTTATGCATACGTGAGTTGCATCGATCAAGCTTTTGGCCTCTTCCTTGAGATGTTAGACAATGAAGTGAAACCAAACAAGGTGACAATGGTTAGCCTTCTTTCTTCATGTGCAGAAGTTGGAGCCCTTGACCTTGGCAAGTGGACTCATGCTTACATACGTCGTCACGACCTTGAAGTAGACGTCATTCTAGAAACAGCTCTCATCAACATGTATGCCAAATGTGGAGATCTAACAATTGCTCGTAGCCTGTTCGATGAAGCCACACGACGGGATATTCACATGTGGAATGCAATGATGGCTGGATTCTCGATGCATGGTTGTGGAACAGAAGCTTTGGAACTCTTTTCAGAGATGGAGAGCCATGGTGTTAAACCTAATGATATCACATTCATTTCTATTTTTCACGCTTGCAGTCATTCGGGATTGGTAGCAGATGGGAAAAAGCATTTCAACAGAATGGTTCACGACTTTGGAATTGTTCCAAAGATTGAGCACTATGGATGCTTGGTGGATCTTCTCGGTCGAGCTGGACGTCTTGACGAAGCTCACGACATCATTGAAAACATGCCCATGAGGCCTAACACAATTACATGGGGTGCTCTGCTTGCTGCATGTAAACTACACAAGAATCTGGCCTTGGGGGAGGTGGCTGCAAGAAAGATTCTTGAATTGGACCCACAAAATTGTGGGTATAGTGTTCTTAAGTCAAACATCTATGCATCAGCAAAGCGATGGAATGATGTAACAAGCGTTAGAGAAACAATGAACCATTTAGGGATGAAGAAAGAACCAGGACTCAGCTGGATAGAAGTAAATGGTTCAATCCACCACTTCAAATCTGGGGATAAAACATGCACACAAACAACAGAAGTATATGAAATGGTGACTGAAATGTGCATCAAGTTGAGAGAGGCAGGATACACTCCAAACACATCAGCAGTTTTGTTAAATGTAGAAGAGGAAGAGAAGGAATTTGCACTCAGTTACCATAGTGAGAAACTGGCCATGGCATTTGGACTCATAAGCATGGCCCCTGGTACACCCATCCGAATCGTTAAGAATCTGAGGATTTGCGATGATTGTCATGCTGCAACAAAGCTATTATCAAAGATCTATGGACGGACAATAATAGTTAGAGATCGAAACCGATTTCACCACTTCAGTGAAGGATATTGTTCTTGTCTGGGTTATTGGTAA

mRNA sequence

ATGGGCTCCGGCCATTCCCATTTGAATCTCCAACACACCCAACAAATCCATGCCCATTTCATCAAAACACAATTCCATAAACCTCACCCTTTCTTCTCTCAATCCCACTTCACCCCGGAAGCCAATTACAATCTCCTCATTTCATCTTACACCAACAACCAACTCCCACAAGCTTCTTTCAGATTGTACCTCCATATGCGAACGACTGATCCTGCTGCTGCACTTGACAACTTCATTTTGCCTTCACTTCTCAAAGCCTGTGCTCAGGCTTCCTGTGGGGTTTGGGGCAGGGAACTCCATGGTTTCGCCGTTAAGAACGGGTTTGCCACAGATGTTTTTGTGTGCAACGCTTTGATGAACATGTATGAGAAATGTGGGAGCTTGGTTTCTGCTCGCTTGGTGTTTGACAAAATGCCCGAGAGAGATGTTGTCTCTTGGAGTACTATGCTCGGGTGCTATGTGCGAAGCAAATCTTTCGGTGAAGCGCTTCGACTCGTAGGAGAGATGCATTTTGTGGGAGTGAAGCTTAGTGGTGTTGCTTTGATTAGCGTGATTGGTGTATTTGGAGAACTCTTGGATATGAAGTCGGGGAGGGCGGTTCATGGTTACATTGTGAGAAATGTTGGTGATGTGAAGATGGAAGTTCCTTTGACAACTGCGTTGATCAATATGTATTGCAAGGGTGAGTGTTTGGAATCAGCACAGAGGCTTTTTGACAGTTTATCTCAGAGAAGTGTTGTTTCTTGGACGTCAATGATAGCAGGTTGTATTCACAATTGCAGATTAGTTGAAGGGGCAAAGAACTTTAATAGAATGCTTGAAGAAAAAATATTTCCTAATGAGATTACATTGCTCAGTTTGATTACAGCATGTGGTTTTGTGAGAACCTTGGATTTGGGCAAATGTTTGCATGCGTATCTGTTAAGAAATGGGTTTGGTATGTCTCTGGCTTTGGCCACTGCTCTCATAGACATGTATGGAAAATGTGGGCAAGTTGGATATGCCAGAGCTCTTTTCAATGGTGTTGAGGAAAAAGATGTCAAGATTTGGAGTGCTATGATATCCACTTATGCATACGTGAGTTGCATCGATCAAGCTTTTGGCCTCTTCCTTGAGATGTTAGACAATGAAGTGAAACCAAACAAGGTGACAATGGTTAGCCTTCTTTCTTCATGTGCAGAAGTTGGAGCCCTTGACCTTGGCAAGTGGACTCATGCTTACATACGTCGTCACGACCTTGAAGTAGACGTCATTCTAGAAACAGCTCTCATCAACATGTATGCCAAATGTGGAGATCTAACAATTGCTCGTAGCCTGTTCGATGAAGCCACACGACGGGATATTCACATGTGGAATGCAATGATGGCTGGATTCTCGATGCATGGTTGTGGAACAGAAGCTTTGGAACTCTTTTCAGAGATGGAGAGCCATGGTGTTAAACCTAATGATATCACATTCATTTCTATTTTTCACGCTTGCAGTCATTCGGGATTGGTAGCAGATGGGAAAAAGCATTTCAACAGAATGGTTCACGACTTTGGAATTGTTCCAAAGATTGAGCACTATGGATGCTTGGTGGATCTTCTCGGTCGAGCTGGACGTCTTGACGAAGCTCACGACATCATTGAAAACATGCCCATGAGGCCTAACACAATTACATGGGGTGCTCTGCTTGCTGCATGTAAACTACACAAGAATCTGGCCTTGGGGGAGGTGGCTGCAAGAAAGATTCTTGAATTGGACCCACAAAATTGTGGGTATAGTGTTCTTAAGTCAAACATCTATGCATCAGCAAAGCGATGGAATGATGTAACAAGCGTTAGAGAAACAATGAACCATTTAGGGATGAAGAAAGAACCAGGACTCAGCTGGATAGAAGTAAATGGTTCAATCCACCACTTCAAATCTGGGGATAAAACATGCACACAAACAACAGAAGTATATGAAATGGTGACTGAAATGTGCATCAAGTTGAGAGAGGCAGGATACACTCCAAACACATCAGCAGTTTTGTTAAATGTAGAAGAGGAAGAGAAGGAATTTGCACTCAGTTACCATAGTGAGAAACTGGCCATGGCATTTGGACTCATAAGCATGGCCCCTGGTACACCCATCCGAATCGTTAAGAATCTGAGGATTTGCGATGATTGTCATGCTGCAACAAAGCTATTATCAAAGATCTATGGACGGACAATAATAGTTAGAGATCGAAACCGATTTCACCACTTCAGTGAAGGATATTGTTCTTGTCTGGGTTATTGGTAA

Coding sequence (CDS)

ATGGGCTCCGGCCATTCCCATTTGAATCTCCAACACACCCAACAAATCCATGCCCATTTCATCAAAACACAATTCCATAAACCTCACCCTTTCTTCTCTCAATCCCACTTCACCCCGGAAGCCAATTACAATCTCCTCATTTCATCTTACACCAACAACCAACTCCCACAAGCTTCTTTCAGATTGTACCTCCATATGCGAACGACTGATCCTGCTGCTGCACTTGACAACTTCATTTTGCCTTCACTTCTCAAAGCCTGTGCTCAGGCTTCCTGTGGGGTTTGGGGCAGGGAACTCCATGGTTTCGCCGTTAAGAACGGGTTTGCCACAGATGTTTTTGTGTGCAACGCTTTGATGAACATGTATGAGAAATGTGGGAGCTTGGTTTCTGCTCGCTTGGTGTTTGACAAAATGCCCGAGAGAGATGTTGTCTCTTGGAGTACTATGCTCGGGTGCTATGTGCGAAGCAAATCTTTCGGTGAAGCGCTTCGACTCGTAGGAGAGATGCATTTTGTGGGAGTGAAGCTTAGTGGTGTTGCTTTGATTAGCGTGATTGGTGTATTTGGAGAACTCTTGGATATGAAGTCGGGGAGGGCGGTTCATGGTTACATTGTGAGAAATGTTGGTGATGTGAAGATGGAAGTTCCTTTGACAACTGCGTTGATCAATATGTATTGCAAGGGTGAGTGTTTGGAATCAGCACAGAGGCTTTTTGACAGTTTATCTCAGAGAAGTGTTGTTTCTTGGACGTCAATGATAGCAGGTTGTATTCACAATTGCAGATTAGTTGAAGGGGCAAAGAACTTTAATAGAATGCTTGAAGAAAAAATATTTCCTAATGAGATTACATTGCTCAGTTTGATTACAGCATGTGGTTTTGTGAGAACCTTGGATTTGGGCAAATGTTTGCATGCGTATCTGTTAAGAAATGGGTTTGGTATGTCTCTGGCTTTGGCCACTGCTCTCATAGACATGTATGGAAAATGTGGGCAAGTTGGATATGCCAGAGCTCTTTTCAATGGTGTTGAGGAAAAAGATGTCAAGATTTGGAGTGCTATGATATCCACTTATGCATACGTGAGTTGCATCGATCAAGCTTTTGGCCTCTTCCTTGAGATGTTAGACAATGAAGTGAAACCAAACAAGGTGACAATGGTTAGCCTTCTTTCTTCATGTGCAGAAGTTGGAGCCCTTGACCTTGGCAAGTGGACTCATGCTTACATACGTCGTCACGACCTTGAAGTAGACGTCATTCTAGAAACAGCTCTCATCAACATGTATGCCAAATGTGGAGATCTAACAATTGCTCGTAGCCTGTTCGATGAAGCCACACGACGGGATATTCACATGTGGAATGCAATGATGGCTGGATTCTCGATGCATGGTTGTGGAACAGAAGCTTTGGAACTCTTTTCAGAGATGGAGAGCCATGGTGTTAAACCTAATGATATCACATTCATTTCTATTTTTCACGCTTGCAGTCATTCGGGATTGGTAGCAGATGGGAAAAAGCATTTCAACAGAATGGTTCACGACTTTGGAATTGTTCCAAAGATTGAGCACTATGGATGCTTGGTGGATCTTCTCGGTCGAGCTGGACGTCTTGACGAAGCTCACGACATCATTGAAAACATGCCCATGAGGCCTAACACAATTACATGGGGTGCTCTGCTTGCTGCATGTAAACTACACAAGAATCTGGCCTTGGGGGAGGTGGCTGCAAGAAAGATTCTTGAATTGGACCCACAAAATTGTGGGTATAGTGTTCTTAAGTCAAACATCTATGCATCAGCAAAGCGATGGAATGATGTAACAAGCGTTAGAGAAACAATGAACCATTTAGGGATGAAGAAAGAACCAGGACTCAGCTGGATAGAAGTAAATGGTTCAATCCACCACTTCAAATCTGGGGATAAAACATGCACACAAACAACAGAAGTATATGAAATGGTGACTGAAATGTGCATCAAGTTGAGAGAGGCAGGATACACTCCAAACACATCAGCAGTTTTGTTAAATGTAGAAGAGGAAGAGAAGGAATTTGCACTCAGTTACCATAGTGAGAAACTGGCCATGGCATTTGGACTCATAAGCATGGCCCCTGGTACACCCATCCGAATCGTTAAGAATCTGAGGATTTGCGATGATTGTCATGCTGCAACAAAGCTATTATCAAAGATCTATGGACGGACAATAATAGTTAGAGATCGAAACCGATTTCACCACTTCAGTGAAGGATATTGTTCTTGTCTGGGTTATTGGTAA

Protein sequence

MGSGHSHLNLQHTQQIHAHFIKTQFHKPHPFFSQSHFTPEANYNLLISSYTNNQLPQASFRLYLHMRTTDPAAALDNFILPSLLKACAQASCGVWGRELHGFAVKNGFATDVFVCNALMNMYEKCGSLVSARLVFDKMPERDVVSWSTMLGCYVRSKSFGEALRLVGEMHFVGVKLSGVALISVIGVFGELLDMKSGRAVHGYIVRNVGDVKMEVPLTTALINMYCKGECLESAQRLFDSLSQRSVVSWTSMIAGCIHNCRLVEGAKNFNRMLEEKIFPNEITLLSLITACGFVRTLDLGKCLHAYLLRNGFGMSLALATALIDMYGKCGQVGYARALFNGVEEKDVKIWSAMISTYAYVSCIDQAFGLFLEMLDNEVKPNKVTMVSLLSSCAEVGALDLGKWTHAYIRRHDLEVDVILETALINMYAKCGDLTIARSLFDEATRRDIHMWNAMMAGFSMHGCGTEALELFSEMESHGVKPNDITFISIFHACSHSGLVADGKKHFNRMVHDFGIVPKIEHYGCLVDLLGRAGRLDEAHDIIENMPMRPNTITWGALLAACKLHKNLALGEVAARKILELDPQNCGYSVLKSNIYASAKRWNDVTSVRETMNHLGMKKEPGLSWIEVNGSIHHFKSGDKTCTQTTEVYEMVTEMCIKLREAGYTPNTSAVLLNVEEEEKEFALSYHSEKLAMAFGLISMAPGTPIRIVKNLRICDDCHAATKLLSKIYGRTIIVRDRNRFHHFSEGYCSCLGYW
Homology
[Close]
BLAST of Lsi06G007940 vs. ExPASy Swiss-Prot
Match: Q3E6Q1 (Pentatricopeptide repeat-containing protein At1g11290, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-H40 PE=2 SV=1)

HSP 1 Score: 557.8 bits (1436), Expect = 1.9e-157
Identity = 283/712 (39.75%), Postives = 425/712 (59.69%), Query Frame = 0 

Query: 43  YNLLISSYTNNQLPQASFRLYLHMRTTDPAAALDNFILPSLLKACAQASCGVWGRELHGF 102
           Y+ ++  +        + + ++ MR  D    + NF    LLK C   +    G+E+HG 
Sbjct: 103 YHTMLKGFAKVSDLDKALQFFVRMRYDDVEPVVYNFTY--LLKVCGDEAELRVGKEIHGL 162

Query: 103 AVKNGFATDVFVCNALMNMYEKCGSLVSARLVFDKMPERDVVSWSTMLGCYVRSKSFGEA 162
            VK+GF+ D+F    L NMY KC  +  AR VFD+MPERD+VSW+T++  Y ++     A
Sbjct: 163 LVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQNGMARMA 222

Query: 163 LRLVGEMHFVGVKLSGVALISVIGVFGELLDMKSGRAVHGYIVRNVGDVKMEVPLTTALI 222
           L +V  M    +K S + ++SV+     L  +  G+ +HGY +R+  D    V ++TAL+
Sbjct: 223 LEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFD--SLVNISTALV 282

Query: 223 NMYCKGECLESAQRLFDSLSQRSVVSWTSMIAGCIHNCRLVEGAKNFNRMLEEKIFPNEI 282
           +MY K   LE+A++LFD + +R+VVSW SMI   + N    E    F +ML+E + P ++
Sbjct: 283 DMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDV 342

Query: 283 TLLSLITACGFVRTLDLGKCLHAYLLRNGFGMSLALATALIDMYGKCGQVGYARALFNGV 342
           +++  + AC  +  L+ G+ +H   +  G   ++++  +LI MY KC +V  A ++F  +
Sbjct: 343 SVMGALHACADLGDLERGRFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAASMFGKL 402

Query: 343 EEKDVKIWSAMISTYAYVSCIDQAFGLFLEMLDNEVKPNKVTMVSLLSSCAEVGALDLGK 402
           + + +  W+AMI  +A       A   F +M    VKP+  T VS++++ AE+      K
Sbjct: 403 QSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITAIAELSITHHAK 462

Query: 403 WTHAYIRRHDLEVDVILETALINMYAKCGDLTIARSLFDEATRRDIHMWNAMMAGFSMHG 462
           W H  + R  L+ +V + TAL++MYAKCG + IAR +FD  + R +  WNAM+ G+  HG
Sbjct: 463 WIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHG 522

Query: 463 CGTEALELFSEMESHGVKPNDITFISIFHACSHSGLVADGKKHFNRMVHDFGIVPKIEHY 522
            G  ALELF EM+   +KPN +TF+S+  ACSHSGLV  G K F  M  ++ I   ++HY
Sbjct: 523 FGKAALELFEEMQKGTIKPNGVTFLSVISACSHSGLVEAGLKCFYMMKENYSIELSMDHY 582

Query: 523 GCLVDLLGRAGRLDEAHDIIENMPMRPNTITWGALLAACKLHKNLALGEVAARKILELDP 582
           G +VDLLGRAGRL+EA D I  MP++P    +GA+L AC++HKN+   E AA ++ EL+P
Sbjct: 583 GAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGACQIHKNVNFAEKAAERLFELNP 642

Query: 583 QNCGYSVLKSNIYASAKRWNDVTSVRETMNHLGMKKEPGLSWIEVNGSIHHFKSGDKTCT 642
            + GY VL +NIY +A  W  V  VR +M   G++K PG S +E+   +H F SG     
Sbjct: 643 DDGGYHVLLANIYRAASMWEKVGQVRVSMLRQGLRKTPGCSMVEIKNEVHSFFSGSTAHP 702

Query: 643 QTTEVYEMVTEMCIKLREAGYTPNTSAVLLNVEEEEKEFALSYHSEKLAMAFGLISMAPG 702
            + ++Y  + ++   ++EAGY P+T+ V L VE + KE  LS HSEKLA++FGL++   G
Sbjct: 703 DSKKIYAFLEKLICHIKEAGYVPDTNLV-LGVENDVKEQLLSTHSEKLAISFGLLNTTAG 762

Query: 703 TPIRIVKNLRICDDCHAATKLLSKIYGRTIIVRDRNRFHHFSEGYCSCLGYW 755
           T I + KNLR+C DCH ATK +S + GR I+VRD  RFHHF  G CSC  YW
Sbjct: 763 TTIHVRKNLRVCADCHNATKYISLVTGREIVVRDMQRFHHFKNGACSCGDYW 809

[Close]
BLAST of Lsi06G007940 vs. ExPASy Swiss-Prot
Match: Q9LUJ2 (Pentatricopeptide repeat-containing protein At3g22690 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H56 PE=3 SV=1)

HSP 1 Score: 546.2 bits (1406), Expect = 5.8e-154
Identity = 293/745 (39.33%), Postives = 432/745 (57.99%), Query Frame = 0 

Query: 43  YNLLISSYTNNQLPQASFRLYLHMRTTDPAAALDNFILPSLLKACAQASCGVWGRELHGF 102
           YN LI  Y ++ L   +  L+L M  +    + D +  P  L ACA++     G ++HG 
Sbjct: 102 YNSLIRGYASSGLCNEAILLFLRMMNS--GISPDKYTFPFGLSACAKSRAKGNGIQIHGL 161

Query: 103 AVKNGFATDVFVCNALMNMYEKCGSLVSARLVFDKMPERDVVSWSTMLGCYVRSKSFGEA 162
            VK G+A D+FV N+L++ Y +CG L SAR VFD+M ER+VVSW++M+  Y R     +A
Sbjct: 162 IVKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDA 221

Query: 163 LRLVGEM-HFVGVKLSGVALISVIGVFGELLDMKSGRAVHGYIVRNVGDVKMEVPLTTAL 222
           + L   M     V  + V ++ VI    +L D+++G  V+ +I RN G +++   + +AL
Sbjct: 222 VDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFI-RNSG-IEVNDLMVSAL 281

Query: 223 INMYCKGECLESAQRLFDSLSQRSVVSWTSMIAGCIHNCRLVEGAKNFNRMLEEKIFPNE 282
           ++MY K   ++ A+RLFD     ++    +M +  +      E    FN M++  + P+ 
Sbjct: 282 VDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPDR 341

Query: 283 ITLLSLITACGFVRTLDLGKCLHAYLLRNGFGMSLALATALIDMYGKC------------ 342
           I++LS I++C  +R +  GK  H Y+LRNGF     +  ALIDMY KC            
Sbjct: 342 ISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDR 401

Query: 343 -------------------GQVGYARALFNGVEEKDVKIWSAMISTYAYVSCIDQAFGLF 402
                              G+V  A   F  + EK++  W+ +IS     S  ++A  +F
Sbjct: 402 MSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVF 461

Query: 403 LEMLDNE-VKPNKVTMVSLLSSCAEVGALDLGKWTHAYIRRHDLEVDVILETALINMYAK 462
             M   E V  + VTM+S+ S+C  +GALDL KW + YI ++ +++DV L T L++M+++
Sbjct: 462 CSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYYYIEKNGIQLDVRLGTTLVDMFSR 521

Query: 463 CGDLTIARSLFDEATRRDIHMWNAMMAGFSMHGCGTEALELFSEMESHGVKPNDITFISI 522
           CGD   A S+F+  T RD+  W A +   +M G    A+ELF +M   G+KP+ + F+  
Sbjct: 522 CGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNAERAIELFDDMIEQGLKPDGVAFVGA 581

Query: 523 FHACSHSGLVADGKKHFNRMVHDFGIVPKIEHYGCLVDLLGRAGRLDEAHDIIENMPMRP 582
             ACSH GLV  GK+ F  M+   G+ P+  HYGC+VDLLGRAG L+EA  +IE+MPM P
Sbjct: 582 LTACSHGGLVQQGKEIFYSMLKLHGVSPEDVHYGCMVDLLGRAGLLEEAVQLIEDMPMEP 641

Query: 583 NTITWGALLAACKLHKNLALGEVAARKILELDPQNCGYSVLKSNIYASAKRWNDVTSVRE 642
           N + W +LLAAC++  N+ +   AA KI  L P+  G  VL SN+YASA RWND+  VR 
Sbjct: 642 NDVIWNSLLAACRVQGNVEMAAYAAEKIQVLAPERTGSYVLLSNVYASAGRWNDMAKVRL 701

Query: 643 TMNHLGMKKEPGLSWIEVNGSIHHFKSGDKTCTQTTEVYEMVTEMCIKLREAGYTPNTSA 702
           +M   G++K PG S I++ G  H F SGD++  +   +  M+ E+  +    G+ P+ S 
Sbjct: 702 SMKEKGLRKPPGTSSIQIRGKTHEFTSGDESHPEMPNIEAMLDEVSQRASHLGHVPDLSN 761

Query: 703 VLLNVEEEEKEFALSYHSEKLAMAFGLISMAPGTPIRIVKNLRICDDCHAATKLLSKIYG 755
           VL++V+E+EK F LS HSEKLAMA+GLIS   GT IRIVKNLR+C DCH+  K  SK+Y 
Sbjct: 762 VLMDVDEKEKIFMLSRHSEKLAMAYGLISSNKGTTIRIVKNLRVCSDCHSFAKFASKVYN 821

[Close]
BLAST of Lsi06G007940 vs. ExPASy Swiss-Prot
Match: Q9LN01 (Pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-H12 PE=2 SV=1)

HSP 1 Score: 540.4 bits (1391), Expect = 3.2e-152
Identity = 294/775 (37.94%), Postives = 430/775 (55.48%), Query Frame = 0 

Query: 5   HSHLNLQHTQQIHAHFIKTQFHKPHPFFSQ--------SHF------------TPEAN-- 64
           H+   LQ  + IHA  IK   H  +   S+         HF              E N  
Sbjct: 41  HNCKTLQSLRIIHAQMIKIGLHNTNYALSKLIEFCILSPHFEGLPYAISVFKTIQEPNLL 100

Query: 65  -YNLLISSYTNNQLPQASFRLYLHMRTTDPAAALDNFILPSLLKACAQASCGVWGRELHG 124
            +N +   +  +  P ++ +LY+ M +       +++  P +LK+CA++     G+++HG
Sbjct: 101 IWNTMFRGHALSSDPVSALKLYVCMISL--GLLPNSYTFPFVLKSCAKSKAFKEGQQIHG 160

Query: 125 FAVKNGFATDVFVCNALMNMYEKCGSLVSARLVFDKMPERDVVSWSTMLGCYVRSKSFGE 184
             +K G   D++V  +L++MY + G L  A  VFDK P RDVVS+               
Sbjct: 161 HVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSY--------------- 220

Query: 185 ALRLVGEMHFVGVKLSGVALISVIGVFGELLDMKSGRAVHGYIVRNVGDVKMEVPLTTAL 244
                                                                    TAL
Sbjct: 221 ---------------------------------------------------------TAL 280

Query: 245 INMYCKGECLESAQRLFDSLSQRSVVSWTSMIAGCIHNCRLVEGAKNFNRMLEEKIFPNE 304
           I  Y     +E+AQ+LFD +  + VVSW +MI+G        E  + F  M++  + P+E
Sbjct: 281 IKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDE 340

Query: 305 ITLLSLITACGFVRTLDLGKCLHAYLLRNGFGMSLALATALIDMYGKCGQVGYARALFNG 364
            T++++++AC    +++LG+ +H ++  +GFG +L +  ALID+Y KCG++  A  LF  
Sbjct: 341 STMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFER 400

Query: 365 VEEKDVKIWSAMISTYAYVSCIDQAFGLFLEMLDNEVKPNKVTMVSLLSSCAEVGALDLG 424
           +  KDV  W+ +I  Y +++   +A  LF EML +   PN VTM+S+L +CA +GA+D+G
Sbjct: 401 LPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIG 460

Query: 425 KWTHAYI--RRHDLEVDVILETALINMYAKCGDLTIARSLFDEATRRDIHMWNAMMAGFS 484
           +W H YI  R   +     L T+LI+MYAKCGD+  A  +F+    + +  WNAM+ GF+
Sbjct: 461 RWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFA 520

Query: 485 MHGCGTEALELFSEMESHGVKPNDITFISIFHACSHSGLVADGKKHFNRMVHDFGIVPKI 544
           MHG    + +LFS M   G++P+DITF+ +  ACSHSG++  G+  F  M  D+ + PK+
Sbjct: 521 MHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMTQDYKMTPKL 580

Query: 545 EHYGCLVDLLGRAGRLDEAHDIIENMPMRPNTITWGALLAACKLHKNLALGEVAARKILE 604
           EHYGC++DLLG +G   EA ++I  M M P+ + W +LL ACK+H N+ LGE  A  +++
Sbjct: 581 EHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGVIWCSLLKACKMHGNVELGESFAENLIK 640

Query: 605 LDPQNCGYSVLKSNIYASAKRWNDVTSVRETMNHLGMKKEPGLSWIEVNGSIHHFKSGDK 664
           ++P+N G  VL SNIYASA RWN+V   R  +N  GMKK PG S IE++  +H F  GDK
Sbjct: 641 IEPENPGSYVLLSNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDK 700

Query: 665 TCTQTTEVYEMVTEMCIKLREAGYTPNTSAVLLNVEEEEKEFALSYHSEKLAMAFGLISM 724
              +  E+Y M+ EM + L +AG+ P+TS VL  +EEE KE AL +HSEKLA+AFGLIS 
Sbjct: 701 FHPRNREIYGMLEEMEVLLEKAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLIST 741

Query: 725 APGTPIRIVKNLRICDDCHAATKLLSKIYGRTIIVRDRNRFHHFSEGYCSCLGYW 755
            PGT + IVKNLR+C +CH ATKL+SKIY R II RDR RFHHF +G CSC  YW
Sbjct: 761 KPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCNDYW 741

[Close]
BLAST of Lsi06G007940 vs. ExPASy Swiss-Prot
Match: O82380 (Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-H33 PE=2 SV=1)

HSP 1 Score: 535.4 bits (1378), Expect = 1.0e-150
Identity = 292/771 (37.87%), Postives = 442/771 (57.33%), Query Frame = 0 

Query: 8   LNLQHTQQIHAHFIKT-QFHKPH---PFFSQSHFT---------------PEAN---YNL 67
           ++L+  +Q H H I+T  F  P+     F+ +  +               P+ N   +N 
Sbjct: 41  VSLRQLKQTHGHMIRTGTFSDPYSASKLFAMAALSSFASLEYARKVFDEIPKPNSFAWNT 100

Query: 68  LISSYTNNQLPQASFRLYLHMRTTDPAAALDNFILPSLLKACAQASCGVWGRELHGFAVK 127
           LI +Y +   P  S   +L M  ++     + +  P L+KA A+ S    G+ LHG AVK
Sbjct: 101 LIRAYASGPDPVLSIWAFLDM-VSESQCYPNKYTFPFLIKAAAEVSSLSLGQSLHGMAVK 160

Query: 128 NGFATDVFVCNALMNMYEKCGSLVSARLVFDKMPERDVVSWSTMLGCYVRSKSFGEALRL 187
           +   +DVFV N+L++ Y  CG L SA  VF  + E+DVVSW++M+  +V+  S  +AL L
Sbjct: 161 SAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALEL 220

Query: 188 VGEMHFVGVKLSGVALISVIGVFGELLDMKSGRAVHGYIVRNVGDVKMEVPLTTALINMY 247
             +M    VK S V ++ V+    ++ +++ GR V  YI  N   V + + L  A+++MY
Sbjct: 221 FKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEEN--RVNVNLTLANAMLDMY 280

Query: 248 CKGECLESAQRLFDSLSQRSVVSWTSMIAGCIHNCRLVEGAKNFNRMLEEKIFPNEITLL 307
            K   +E A+RLFD++ ++  V+WT+M+ G                              
Sbjct: 281 TKCGSIEDAKRLFDAMEEKDNVTWTTMLDG------------------------------ 340

Query: 308 SLITACGFVRTLDLGKCLHAYLLRNGFGMSLALATALIDMYGKCGQVGYARALFNGVEEK 367
                                                   Y        AR + N + +K
Sbjct: 341 ----------------------------------------YAISEDYEAAREVLNSMPQK 400

Query: 368 DVKIWSAMISTYAYVSCIDQAFGLFLEM-LDNEVKPNKVTMVSLLSSCAEVGALDLGKWT 427
           D+  W+A+IS Y      ++A  +F E+ L   +K N++T+VS LS+CA+VGAL+LG+W 
Sbjct: 401 DIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGRWI 460

Query: 428 HAYIRRHDLEVDVILETALINMYAKCGDLTIARSLFDEATRRDIHMWNAMMAGFSMHGCG 487
           H+YI++H + ++  + +ALI+MY+KCGDL  +R +F+   +RD+ +W+AM+ G +MHGCG
Sbjct: 461 HSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAMHGCG 520

Query: 488 TEALELFSEMESHGVKPNDITFISIFHACSHSGLVADGKKHFNRMVHDFGIVPKIEHYGC 547
            EA+++F +M+   VKPN +TF ++F ACSH+GLV + +  F++M  ++GIVP+ +HY C
Sbjct: 521 NEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFHQMESNYGIVPEEKHYAC 580

Query: 548 LVDLLGRAGRLDEAHDIIENMPMRPNTITWGALLAACKLHKNLALGEVAARKILELDPQN 607
           +VD+LGR+G L++A   IE MP+ P+T  WGALL ACK+H NL L E+A  ++LEL+P+N
Sbjct: 581 IVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLNLAEMACTRLLELEPRN 640

Query: 608 CGYSVLKSNIYASAKRWNDVTSVRETMNHLGMKKEPGLSWIEVNGSIHHFKSGDKTCTQT 667
            G  VL SNIYA   +W +V+ +R+ M   G+KKEPG S IE++G IH F SGD     +
Sbjct: 641 DGAHVLLSNIYAKLGKWENVSELRKHMRVTGLKKEPGCSSIEIDGMIHEFLSGDNAHPMS 700

Query: 668 TEVYEMVTEMCIKLREAGYTPNTSAVLLNVEEEE-KEFALSYHSEKLAMAFGLISMAPGT 727
            +VY  + E+  KL+  GY P  S VL  +EEEE KE +L+ HSEKLA+ +GLIS     
Sbjct: 701 EKVYGKLHEVMEKLKSNGYEPEISQVLQIIEEEEMKEQSLNLHSEKLAICYGLISTEAPK 738

Query: 728 PIRIVKNLRICDDCHAATKLLSKIYGRTIIVRDRNRFHHFSEGYCSCLGYW 755
            IR++KNLR+C DCH+  KL+S++Y R IIVRDR RFHHF  G CSC  +W
Sbjct: 761 VIRVIKNLRVCGDCHSVAKLISQLYDREIIVRDRYRFHHFRNGQCSCNDFW 738

[Close]
BLAST of Lsi06G007940 vs. ExPASy Swiss-Prot
Match: Q9SN39 (Pentatricopeptide repeat-containing protein DOT4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=DOT4 PE=2 SV=1)

HSP 1 Score: 533.9 bits (1374), Expect = 3.0e-150
Identity = 272/713 (38.15%), Postives = 421/713 (59.05%), Query Frame = 0 

Query: 43  YNLLISSYTNNQLPQASFRLYLHMRTTDPAAALDNFILPSLLKACAQASCGVWGRELHGF 102
           +N+L++    +     S  L+  M ++     +D++    + K+ +       G +LHGF
Sbjct: 163 WNILMNELAKSGDFSGSIGLFKKMMSS--GVEMDSYTFSCVSKSFSSLRSVHGGEQLHGF 222

Query: 103 AVKNGFATDVFVCNALMNMYEKCGSLVSARLVFDKMPERDVVSWSTMLGCYVRSKSFGEA 162
            +K+GF     V N+L+  Y K   + SAR VFD+M ERDV+SW++++  YV +    + 
Sbjct: 223 ILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKG 282

Query: 163 LRLVGEMHFVGVKLSGVALISVIGVFGELLDMKSGRAVHGYIVRNVGDVKMEVPLTTALI 222
           L +  +M   G+++    ++SV     +   +  GRAVH   V+       E      L+
Sbjct: 283 LSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVK--ACFSREDRFCNTLL 342

Query: 223 NMYCKGECLESAQRLFDSLSQRSVVSWTSMIAGCIHNCRLVEGAKNFNRMLEEKIFPNEI 282
           +MY K   L+SA+ +F  +S RSVVS+TSMIAG        E  K F  M EE I P+  
Sbjct: 343 DMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVY 402

Query: 283 TLLSLITACGFVRTLDLGKCLHAYLLRNGFGMSLALATALIDMYGKCGQVGYARALFNGV 342
           T+ +++  C   R LD GK +H ++  N  G  + ++ AL+DMY KCG +  A  +F+ +
Sbjct: 403 TVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEM 462

Query: 343 EEKDVKIWSAMISTYAYVSCIDQAFGLFLEMLDNE-VKPNKVTMVSLLSSCAEVGALDLG 402
             KD+  W+ +I  Y+     ++A  LF  +L+ +   P++ T+  +L +CA + A D G
Sbjct: 463 RVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKG 522

Query: 403 KWTHAYIRRHDLEVDVILETALINMYAKCGDLTIARSLFDEATRRDIHMWNAMMAGFSMH 462
           +  H YI R+    D  +  +L++MYAKCG L +A  LFD+   +D+  W  M+AG+ MH
Sbjct: 523 REIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMH 582

Query: 463 GCGTEALELFSEMESHGVKPNDITFISIFHACSHSGLVADGKKHFNRMVHDFGIVPKIEH 522
           G G EA+ LF++M   G++ ++I+F+S+ +ACSHSGLV +G + FN M H+  I P +EH
Sbjct: 583 GFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEH 642

Query: 523 YGCLVDLLGRAGRLDEAHDIIENMPMRPNTITWGALLAACKLHKNLALGEVAARKILELD 582
           Y C+VD+L R G L +A+  IENMP+ P+   WGALL  C++H ++ L E  A K+ EL+
Sbjct: 643 YACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEKVAEKVFELE 702

Query: 583 PQNCGYSVLKSNIYASAKRWNDVTSVRETMNHLGMKKEPGLSWIEVNGSIHHFKSGDKTC 642
           P+N GY VL +NIYA A++W  V  +R+ +   G++K PG SWIE+ G ++ F +GD + 
Sbjct: 703 PENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIFVAGDSSN 762

Query: 643 TQTTEVYEMVTEMCIKLREAGYTPNTSAVLLNVEEEEKEFALSYHSEKLAMAFGLISMAP 702
            +T  +   + ++  ++ E GY+P T   L++ EE EKE AL  HSEKLAMA G+IS   
Sbjct: 763 PETENIEAFLRKVRARMIEEGYSPLTKYALIDAEEMEKEEALCGHSEKLAMALGIISSGH 822

Query: 703 GTPIRIVKNLRICDDCHAATKLLSKIYGRTIIVRDRNRFHHFSEGYCSCLGYW 755
           G  IR+ KNLR+C DCH   K +SK+  R I++RD NRFH F +G+CSC G+W
Sbjct: 823 GKIIRVTKNLRVCGDCHEMAKFMSKLTRREIVLRDSNRFHQFKDGHCSCRGFW 871

[Close]
BLAST of Lsi06G007940 vs. ExPASy TrEMBL
Match: A0A5A7V2V9 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold403G001350 PE=3 SV=1)

HSP 1 Score: 1386.7 bits (3588), Expect = 0.0e+00
Identity = 673/752 (89.49%), Postives = 701/752 (93.22%), Query Frame = 0 

Query: 3   SGHSHLNLQHTQQIHAHFIKTQFHKPHPFFSQSHFTPEANYNLLISSYTNNQLPQASFRL 62
           SG+SHLNLQ T Q+HAHFIKTQFH PHPFFSQSHFTPEANYNLLISSYTNN LPQAS   
Sbjct: 15  SGYSHLNLQQTHQLHAHFIKTQFHNPHPFFSQSHFTPEANYNLLISSYTNNHLPQASLNC 74

Query: 63  YLHMRTTDPAAALDNFILPSLLKACAQASCGVWGRELHGFAVKNGFATDVFVCNALMNMY 122
           YLHMRT D AAALDNFILPSLLKACAQAS    GRELHGFA KNGFA+DVFVCNALMNMY
Sbjct: 75  YLHMRTNDAAAALDNFILPSLLKACAQASSADLGRELHGFAQKNGFASDVFVCNALMNMY 134

Query: 123 EKCGSLVSARLVFDKMPERDVVSWSTMLGCYVRSKSFGEALRLVGEMHFVGVKLSGVALI 182
           EKCG LVSA LVFDKMPERDVVSWSTMLGCYVRSK+FGEALRLV EM FVGVKLSGVALI
Sbjct: 135 EKCGCLVSASLVFDKMPERDVVSWSTMLGCYVRSKAFGEALRLVREMQFVGVKLSGVALI 194

Query: 183 SVIGVFGELLDMKSGRAVHGYIVRNVGDVKMEVPLTTALINMYCKGECLESAQRLFDSLS 242
           S+IGVFG LLDMKSGRAVHGYIVRNVGD KMEV LTTALI+MYCK ECL SAQRLFD LS
Sbjct: 195 SLIGVFGNLLDMKSGRAVHGYIVRNVGDEKMEVSLTTALIDMYCKCECLASAQRLFDRLS 254

Query: 243 QRSVVSWTSMIAGCIHNCRLVEGAKNFNRMLEEKIFPNEITLLSLITACGFVRTLDLGKC 302
           +RSVVSWT MI GCI +CRLVEGAKNFNRMLEEK+FPNEITLLSLIT CGFV+TLDLGK 
Sbjct: 255 KRSVVSWTVMIKGCIRSCRLVEGAKNFNRMLEEKLFPNEITLLSLITECGFVKTLDLGKW 314

Query: 303 LHAYLLRNGFGMSLALATALIDMYGKCGQVGYARALFNGVEEKDVKIWSAMISTYAYVSC 362
            HAYLLRNGFGMSLAL TALIDMYGKCGQVGYARALFNGVE+KDVKIWSA+IS YA+VSC
Sbjct: 315 FHAYLLRNGFGMSLALVTALIDMYGKCGQVGYARALFNGVEKKDVKIWSALISAYAHVSC 374

Query: 363 IDQAFGLFLEMLDNEVKPNKVTMVSLLSSCAEVGALDLGKWTHAYIRRHDLEVDVILETA 422
           +DQ F LFLEMLDNEVKPNKVTMVSLLS CAE G LDLGKWTHAYI RH LEVDVILETA
Sbjct: 375 MDQVFNLFLEMLDNEVKPNKVTMVSLLSLCAEAGTLDLGKWTHAYINRHGLEVDVILETA 434

Query: 423 LINMYAKCGDLTIARSLFDEATRRDIHMWNAMMAGFSMHGCGTEALELFSEMESHGVKPN 482
           LINMY KCGD+TIARSLFDEAT+RDIHMWNAMMAGFSMHGCG EALELFSEMESHGV+PN
Sbjct: 435 LINMYVKCGDVTIARSLFDEATQRDIHMWNAMMAGFSMHGCGKEALELFSEMESHGVEPN 494

Query: 483 DITFISIFHACSHSGLVADGKKHFNRMVHDFGIVPKIEHYGCLVDLLGRAGRLDEAHDII 542
           DITFISIFHACSHSGLV +GKKHFNRMVH FGIVPK+EHYGCLVDLLGRAG L+EAH+II
Sbjct: 495 DITFISIFHACSHSGLVVEGKKHFNRMVHSFGIVPKMEHYGCLVDLLGRAGHLEEAHNII 554

Query: 543 ENMPMRPNTITWGALLAACKLHKNLALGEVAARKILELDPQNCGYSVLKSNIYASAKRWN 602
           ENMPMRPNTI WGALLAACKLHKNLALGEVAARKILELDPQNCGYSVLKSNIYASAKRWN
Sbjct: 555 ENMPMRPNTIIWGALLAACKLHKNLALGEVAARKILELDPQNCGYSVLKSNIYASAKRWN 614

Query: 603 DVTSVRETMNHLGMKKEPGLSWIEVNGSIHHFKSGDKTCTQTTEVYEMVTEMCIKLREAG 662
           DVTSVRETM+HLGMKKEPGLSWIEVNGS+HHFKSGDKTCTQTT+VYEMV EMCIKLREAG
Sbjct: 615 DVTSVRETMSHLGMKKEPGLSWIEVNGSVHHFKSGDKTCTQTTKVYEMVAEMCIKLREAG 674

Query: 663 YTPNTSAVLLNVEEEEKEFALSYHSEKLAMAFGLISMAPGTPIRIVKNLRICDDCHAATK 722
           YTPNT+ VLLN++EEEKE ALSYHSEKLAMAFGLIS APGTPIRI+KNLRICDDCHAA K
Sbjct: 675 YTPNTAEVLLNIDEEEKESALSYHSEKLAMAFGLISTAPGTPIRIIKNLRICDDCHAAMK 734

Query: 723 LLSKIYGRTIIVRDRNRFHHFSEGYCSCLGYW 755
           LLSKIY RTIIVRDRNRFHHFSEGYCSCLGYW
Sbjct: 735 LLSKIYARTIIVRDRNRFHHFSEGYCSCLGYW 766

[Close]
BLAST of Lsi06G007940 vs. ExPASy TrEMBL
Match: A0A1S3CJ58 (pentatricopeptide repeat-containing protein At3g26782, mitochondrial-like OS=Cucumis melo OX=3656 GN=LOC103501009 PE=3 SV=1)

HSP 1 Score: 1385.9 bits (3586), Expect = 0.0e+00
Identity = 672/752 (89.36%), Postives = 702/752 (93.35%), Query Frame = 0 

Query: 3   SGHSHLNLQHTQQIHAHFIKTQFHKPHPFFSQSHFTPEANYNLLISSYTNNQLPQASFRL 62
           SG+SHLNLQ T Q+HAHFIKTQFH PHPFFSQSHFTPEANYNLLISSYTNN LPQAS   
Sbjct: 15  SGYSHLNLQQTHQLHAHFIKTQFHNPHPFFSQSHFTPEANYNLLISSYTNNHLPQASLNC 74

Query: 63  YLHMRTTDPAAALDNFILPSLLKACAQASCGVWGRELHGFAVKNGFATDVFVCNALMNMY 122
           YLHMRT D AAALDNFILPSLLKACAQAS    GRELHGFA KNGFA+DVFVCNALMNMY
Sbjct: 75  YLHMRTNDAAAALDNFILPSLLKACAQASSADLGRELHGFAQKNGFASDVFVCNALMNMY 134

Query: 123 EKCGSLVSARLVFDKMPERDVVSWSTMLGCYVRSKSFGEALRLVGEMHFVGVKLSGVALI 182
           EKCG LVSA LVFDKMPERDVVSWSTMLGCYVRSK+FGEALRLV EM FVGVKLSGVALI
Sbjct: 135 EKCGCLVSASLVFDKMPERDVVSWSTMLGCYVRSKAFGEALRLVREMQFVGVKLSGVALI 194

Query: 183 SVIGVFGELLDMKSGRAVHGYIVRNVGDVKMEVPLTTALINMYCKGECLESAQRLFDSLS 242
           S+IGVFG LLDMKSGRAVHGYI+RNVGD KMEV LTTALI+MYCK ECL SAQRLFD LS
Sbjct: 195 SLIGVFGNLLDMKSGRAVHGYIMRNVGDEKMEVSLTTALIDMYCKCECLASAQRLFDRLS 254

Query: 243 QRSVVSWTSMIAGCIHNCRLVEGAKNFNRMLEEKIFPNEITLLSLITACGFVRTLDLGKC 302
           +RSVVSWT MI GCI +CRLVEGAKNFNRMLEEK+FPNEITLLSLIT CGFV+TLDLGK 
Sbjct: 255 KRSVVSWTVMIKGCIRSCRLVEGAKNFNRMLEEKLFPNEITLLSLITECGFVKTLDLGKW 314

Query: 303 LHAYLLRNGFGMSLALATALIDMYGKCGQVGYARALFNGVEEKDVKIWSAMISTYAYVSC 362
            HAYLLRNGFGMSLAL TALIDMYGKCGQVGYARALFNGVE+KDVKIWSA+IS YA+VSC
Sbjct: 315 FHAYLLRNGFGMSLALVTALIDMYGKCGQVGYARALFNGVEKKDVKIWSALISAYAHVSC 374

Query: 363 IDQAFGLFLEMLDNEVKPNKVTMVSLLSSCAEVGALDLGKWTHAYIRRHDLEVDVILETA 422
           +DQ F LFLEMLDNEVKPNKVTMVSLLS CAE G LDLGKWTHAYI RH LEVDVILETA
Sbjct: 375 MDQVFNLFLEMLDNEVKPNKVTMVSLLSLCAEAGTLDLGKWTHAYINRHGLEVDVILETA 434

Query: 423 LINMYAKCGDLTIARSLFDEATRRDIHMWNAMMAGFSMHGCGTEALELFSEMESHGVKPN 482
           LINMY KCGD+TIARSLFDEAT+RDIHMWNAMMAGFSMHGCG EALELFSEMESHGV+PN
Sbjct: 435 LINMYVKCGDVTIARSLFDEATQRDIHMWNAMMAGFSMHGCGKEALELFSEMESHGVEPN 494

Query: 483 DITFISIFHACSHSGLVADGKKHFNRMVHDFGIVPKIEHYGCLVDLLGRAGRLDEAHDII 542
           DITFISIFHACSHSGLV +GKKHFNRMVH+FGIVPK+EHYGCLVDLLGRAG L+EAH+II
Sbjct: 495 DITFISIFHACSHSGLVVEGKKHFNRMVHNFGIVPKMEHYGCLVDLLGRAGHLEEAHNII 554

Query: 543 ENMPMRPNTITWGALLAACKLHKNLALGEVAARKILELDPQNCGYSVLKSNIYASAKRWN 602
           ENMPMRPNTI WGALLAACKLHKNLALGEVAARKILELDPQNCGYSVLKSNIYASAKRWN
Sbjct: 555 ENMPMRPNTIIWGALLAACKLHKNLALGEVAARKILELDPQNCGYSVLKSNIYASAKRWN 614

Query: 603 DVTSVRETMNHLGMKKEPGLSWIEVNGSIHHFKSGDKTCTQTTEVYEMVTEMCIKLREAG 662
           DVTSVRETM+HLGMKKEPGLSWIEVNGS+HHFKSGDKTCTQTT+VYEMV EMCIKLREAG
Sbjct: 615 DVTSVRETMSHLGMKKEPGLSWIEVNGSVHHFKSGDKTCTQTTKVYEMVAEMCIKLREAG 674

Query: 663 YTPNTSAVLLNVEEEEKEFALSYHSEKLAMAFGLISMAPGTPIRIVKNLRICDDCHAATK 722
           YTPNT+ VLLN++EEEKE ALSYHSEKLAMAFGLIS APGTPIRI+KNLRICDDCHAA K
Sbjct: 675 YTPNTAEVLLNIDEEEKESALSYHSEKLAMAFGLISTAPGTPIRIIKNLRICDDCHAAMK 734

Query: 723 LLSKIYGRTIIVRDRNRFHHFSEGYCSCLGYW 755
           LLSKIY RTIIVRDRNRFHHFSEGYCSCLGYW
Sbjct: 735 LLSKIYARTIIVRDRNRFHHFSEGYCSCLGYW 766

[Close]
BLAST of Lsi06G007940 vs. ExPASy TrEMBL
Match: A0A0A0LYC2 (DYW_deaminase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G690260 PE=3 SV=1)

HSP 1 Score: 1364.4 bits (3530), Expect = 0.0e+00
Identity = 661/752 (87.90%), Postives = 700/752 (93.09%), Query Frame = 0 

Query: 3   SGHSHLNLQHTQQIHAHFIKTQFHKPHPFFSQSHFTPEANYNLLISSYTNNQLPQASFRL 62
           SGHSHLNLQ T Q+HAHFIKTQFH PHPFFSQSHFTPEANYNLLISSYTNN LPQASF  
Sbjct: 15  SGHSHLNLQQTHQLHAHFIKTQFHNPHPFFSQSHFTPEANYNLLISSYTNNHLPQASFNC 74

Query: 63  YLHMRTTDPAAALDNFILPSLLKACAQASCGVWGRELHGFAVKNGFATDVFVCNALMNMY 122
           YLHMR+ D AAALDNFILPSLLKACAQAS G  GRELHGFA KNGFA+DVFVCNALMNMY
Sbjct: 75  YLHMRSND-AAALDNFILPSLLKACAQASSGDLGRELHGFAQKNGFASDVFVCNALMNMY 134

Query: 123 EKCGSLVSARLVFDKMPERDVVSWSTMLGCYVRSKSFGEALRLVGEMHFVGVKLSGVALI 182
           EKCG LVSARLVFD+MPERDVVSW+TMLGCYVRSK+FGEALRLV EM FVGVKLSGVALI
Sbjct: 135 EKCGCLVSARLVFDQMPERDVVSWTTMLGCYVRSKAFGEALRLVREMQFVGVKLSGVALI 194

Query: 183 SVIGVFGELLDMKSGRAVHGYIVRNVGDVKMEVPLTTALINMYCKGECLESAQRLFDSLS 242
           S+I VFG LLDMKSGRAVHGYIVRNVGD KMEV +TTALI+MYCKG CL SAQRLFD LS
Sbjct: 195 SLIAVFGNLLDMKSGRAVHGYIVRNVGDEKMEVSMTTALIDMYCKGGCLASAQRLFDRLS 254

Query: 243 QRSVVSWTSMIAGCIHNCRLVEGAKNFNRMLEEKIFPNEITLLSLITACGFVRTLDLGKC 302
           +RSVVSWT MIAGCI +CRL EGAKNFNRMLEEK+FPNEITLLSLIT CGFV TLDLGK 
Sbjct: 255 KRSVVSWTVMIAGCIRSCRLDEGAKNFNRMLEEKLFPNEITLLSLITECGFVGTLDLGKW 314

Query: 303 LHAYLLRNGFGMSLALATALIDMYGKCGQVGYARALFNGVEEKDVKIWSAMISTYAYVSC 362
            HAYLLRNGFGMSLAL TALIDMYGKCGQVGYARALFNGV++KDVKIWS +IS YA+VSC
Sbjct: 315 FHAYLLRNGFGMSLALVTALIDMYGKCGQVGYARALFNGVKKKDVKIWSVLISAYAHVSC 374

Query: 363 IDQAFGLFLEMLDNEVKPNKVTMVSLLSSCAEVGALDLGKWTHAYIRRHDLEVDVILETA 422
           +DQ F LF+EML+N+VKPN VTMVSLLS CAE GALDLGKWTHAYI RH LEVDVILETA
Sbjct: 375 MDQVFNLFVEMLNNDVKPNNVTMVSLLSLCAEAGALDLGKWTHAYINRHGLEVDVILETA 434

Query: 423 LINMYAKCGDLTIARSLFDEATRRDIHMWNAMMAGFSMHGCGTEALELFSEMESHGVKPN 482
           LINMYAKCGD+TIARSLF+EA +RDI MWN MMAGFSMHGCG EALELFSEMESHGV+PN
Sbjct: 435 LINMYAKCGDVTIARSLFNEAMQRDIRMWNTMMAGFSMHGCGKEALELFSEMESHGVEPN 494

Query: 483 DITFISIFHACSHSGLVADGKKHFNRMVHDFGIVPKIEHYGCLVDLLGRAGRLDEAHDII 542
           DITF+SIFHACSHSGLV +GKK+FN+MVHDFGIVPK+EHYGCLVDLLGRAG LDEAH+II
Sbjct: 495 DITFVSIFHACSHSGLVVEGKKYFNKMVHDFGIVPKMEHYGCLVDLLGRAGHLDEAHNII 554

Query: 543 ENMPMRPNTITWGALLAACKLHKNLALGEVAARKILELDPQNCGYSVLKSNIYASAKRWN 602
           ENMPMRPNTI WGALLAACKLHKNLALGEVAARKILELDPQNCGYSVLKSNIYASAKRWN
Sbjct: 555 ENMPMRPNTIIWGALLAACKLHKNLALGEVAARKILELDPQNCGYSVLKSNIYASAKRWN 614

Query: 603 DVTSVRETMNHLGMKKEPGLSWIEVNGSIHHFKSGDKTCTQTTEVYEMVTEMCIKLREAG 662
           DVTSVRE M+H GMKKEPGLSWIEV+GS+HHFKSGDK CTQTT+VYEMVTEMCIKLRE+G
Sbjct: 615 DVTSVREAMSHSGMKKEPGLSWIEVSGSVHHFKSGDKACTQTTKVYEMVTEMCIKLRESG 674

Query: 663 YTPNTSAVLLNVEEEEKEFALSYHSEKLAMAFGLISMAPGTPIRIVKNLRICDDCHAATK 722
           YTPNT+AVLLN++EEEKE ALSYHSEKLA AFGLIS APGTPIRIVKNLRICDDCHAATK
Sbjct: 675 YTPNTAAVLLNIDEEEKESALSYHSEKLATAFGLISTAPGTPIRIVKNLRICDDCHAATK 734

Query: 723 LLSKIYGRTIIVRDRNRFHHFSEGYCSCLGYW 755
           LLSKIYGRTIIVRDRNRFHHFSEGYCSC+GYW
Sbjct: 735 LLSKIYGRTIIVRDRNRFHHFSEGYCSCMGYW 765

[Close]
BLAST of Lsi06G007940 vs. ExPASy TrEMBL
Match: A0A6J1HA74 (pentatricopeptide repeat-containing protein At3g26782, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111461539 PE=3 SV=1)

HSP 1 Score: 1337.8 bits (3461), Expect = 0.0e+00
Identity = 649/753 (86.19%), Postives = 695/753 (92.30%), Query Frame = 0 

Query: 2   GSGHSHLNLQHTQQIHAHFIKTQFHKPHPFFSQSHFTPEANYNLLISSYTNNQLPQASFR 61
           GSGHSHLNLQ T QIHAH IKTQF  PH FFS+SHFTPEAN+NLLISSYT+N LPQA+F 
Sbjct: 13  GSGHSHLNLQQTHQIHAHCIKTQFRNPHSFFSRSHFTPEANFNLLISSYTDNHLPQAAFI 72

Query: 62  LYLHMRTTDPAAALDNFILPSLLKACAQASCGVWGRELHGFAVKNGFATDVFVCNALMNM 121
           LY HMRTTD AAA+DNFI+PSLLKACAQAS   +GRE+HGFAVKNGF +DVFVCNALMNM
Sbjct: 73  LYHHMRTTD-AAAVDNFIVPSLLKACAQASSTNFGREVHGFAVKNGFVSDVFVCNALMNM 132

Query: 122 YEKCGSLVSARLVFDKMPERDVVSWSTMLGCYVRSKSFGEALRLVGEMHFVGVKLSGVAL 181
           YEKCGSLVSA LVFDKMP+RDVVSWSTMLGCYVRSKSFGEA RLV EMHFVGVKLS VAL
Sbjct: 133 YEKCGSLVSACLVFDKMPDRDVVSWSTMLGCYVRSKSFGEAYRLVREMHFVGVKLSDVAL 192

Query: 182 ISVIGVFGELLDMKSGRAVHGYIVRNVGDVKMEVPLTTALINMYCKGECLESAQRLFDSL 241
           IS+IGVFGEL DMKSGRA+HGY+VRNVG+ ++E+PLTTALI+MYCKG+ L SA RLFD L
Sbjct: 193 ISMIGVFGELSDMKSGRAIHGYVVRNVGNERIELPLTTALIDMYCKGDKLASAMRLFDGL 252

Query: 242 SQRSVVSWTSMIAGCIHNCRLVEGAKNFNRMLEEKIFPNEITLLSLITACGFVRTLDLGK 301
           SQR+VVSWT++IAGCI +CR VEGAKNF+RMLEE I PNEITLLSLIT CGFV  LDLGK
Sbjct: 253 SQRNVVSWTALIAGCIRSCRFVEGAKNFSRMLEENIAPNEITLLSLITECGFVGALDLGK 312

Query: 302 CLHAYLLRNGFGMSLALATALIDMYGKCGQVGYARALFNGVEEKDVKIWSAMISTYAYVS 361
            LHAYLLRNGFGMSLALATALIDMYGKCGQV YARALFNGVEEKDVKIWSA+IS YA+ S
Sbjct: 313 WLHAYLLRNGFGMSLALATALIDMYGKCGQVAYARALFNGVEEKDVKIWSALISAYAHAS 372

Query: 362 CIDQAFGLFLEMLDNEVKPNKVTMVSLLSSCAEVGALDLGKWTHAYIRRHDLEVDVILET 421
           CIDQAF LFL+MLD+EVKPNKVTMVSLLS CAEVGALDLG+WTHAYI RH +EVDV+LET
Sbjct: 373 CIDQAFSLFLKMLDSEVKPNKVTMVSLLSLCAEVGALDLGRWTHAYINRHGVEVDVVLET 432

Query: 422 ALINMYAKCGDLTIARSLFDEATRRDIHMWNAMMAGFSMHGCGTEALELFSEMESHGVKP 481
           ALINMYAKCGDL  AR LFDEATRRDIHMWNAMMAGFS+HGCG EALELFS+M  HGV+P
Sbjct: 433 ALINMYAKCGDLKTARCLFDEATRRDIHMWNAMMAGFSIHGCGKEALELFSDMVCHGVEP 492

Query: 482 NDITFISIFHACSHSGLVADGKKHFNRMVHDFGIVPKIEHYGCLVDLLGRAGRLDEAHDI 541
           NDITFIS+FHACSHSGLV +G KHF+RMVH+FGIVPKIEHYGCLVDLLGRA RLD AH I
Sbjct: 493 NDITFISVFHACSHSGLVGEGMKHFDRMVHEFGIVPKIEHYGCLVDLLGRAKRLDAAHSI 552

Query: 542 IENMPMRPNTITWGALLAACKLHKNLALGEVAARKILELDPQNCGYSVLKSNIYASAKRW 601
           IENMPMRPNTI WGALLAACKLHKNLALGEVAARKILELDP+NCGY VLKSNIYAS KRW
Sbjct: 553 IENMPMRPNTIVWGALLAACKLHKNLALGEVAARKILELDPENCGYRVLKSNIYASEKRW 612

Query: 602 NDVTSVRETMNHLGMKKEPGLSWIEVNGSIHHFKSGDKTCTQTTEVYEMVTEMCIKLREA 661
            DVTSVRETM+HLGMKKEPGLSWIEVNGS+HHF+SGDKTCTQT +V+EMVTEMCIKLREA
Sbjct: 613 TDVTSVRETMSHLGMKKEPGLSWIEVNGSVHHFRSGDKTCTQTRKVHEMVTEMCIKLREA 672

Query: 662 GYTPNTSAVLLNVEEEEKEFALSYHSEKLAMAFGLISMAPGTPIRIVKNLRICDDCHAAT 721
           GY PNTSAVLLNVE+EEKE ALSYHSEKLAMAFGLIS APGTPIRI+KNLRICDDCHAAT
Sbjct: 673 GYAPNTSAVLLNVEDEEKESALSYHSEKLAMAFGLISTAPGTPIRIIKNLRICDDCHAAT 732

Query: 722 KLLSKIYGRTIIVRDRNRFHHFSEGYCSCLGYW 755
           KLLSKIYGRTIIVRDRNRFHHFSEGYCSCLGYW
Sbjct: 733 KLLSKIYGRTIIVRDRNRFHHFSEGYCSCLGYW 764

[Close]
BLAST of Lsi06G007940 vs. ExPASy TrEMBL
Match: A0A6J1JKG9 (pentatricopeptide repeat-containing protein At4g21065-like OS=Cucurbita maxima OX=3661 GN=LOC111485395 PE=3 SV=1)

HSP 1 Score: 1312.4 bits (3395), Expect = 0.0e+00
Identity = 634/753 (84.20%), Postives = 688/753 (91.37%), Query Frame = 0 

Query: 2   GSGHSHLNLQHTQQIHAHFIKTQFHKPHPFFSQSHFTPEANYNLLISSYTNNQLPQASFR 61
           GSGHSHLNLQ T QIHAHFIKTQF  PH FFS+S+FTPEAN+NLLISSYT+N  PQA+F 
Sbjct: 13  GSGHSHLNLQQTHQIHAHFIKTQFRNPHNFFSRSNFTPEANFNLLISSYTDNHRPQAAFN 72

Query: 62  LYLHMRTTDPAAALDNFILPSLLKACAQASCGVWGRELHGFAVKNGFATDVFVCNALMNM 121
           LY HMRTTD AAA+DNFI+PSLLKACAQAS    GRE+HGFAVKNGF +DVFVCNALMNM
Sbjct: 73  LYHHMRTTD-AAAVDNFIVPSLLKACAQASSTNLGREVHGFAVKNGFVSDVFVCNALMNM 132

Query: 122 YEKCGSLVSARLVFDKMPERDVVSWSTMLGCYVRSKSFGEALRLVGEMHFVGVKLSGVAL 181
           YEKCGSLVSA LVFDKMP+RDVVSWSTMLGCYVRSKSFGEA RLV EMHFVGVKLS VAL
Sbjct: 133 YEKCGSLVSACLVFDKMPDRDVVSWSTMLGCYVRSKSFGEAYRLVREMHFVGVKLSDVAL 192

Query: 182 ISVIGVFGELLDMKSGRAVHGYIVRNVGDVKMEVPLTTALINMYCKGECLESAQRLFDSL 241
           IS+IGVFGEL DMKSGRA+HGY+VRNVG  ++E+PLTTALI+MYCKG+ L SA RLF+ L
Sbjct: 193 ISMIGVFGELSDMKSGRAIHGYVVRNVGKERIELPLTTALIDMYCKGDNLASAMRLFNGL 252

Query: 242 SQRSVVSWTSMIAGCIHNCRLVEGAKNFNRMLEEKIFPNEITLLSLITACGFVRTLDLGK 301
           SQR+VVSWT++IAGCI +CR VEGAKNF+RMLEE I PNEITLLSLIT CGFV  LDLGK
Sbjct: 253 SQRNVVSWTALIAGCIRSCRFVEGAKNFSRMLEENIVPNEITLLSLITECGFVGALDLGK 312

Query: 302 CLHAYLLRNGFGMSLALATALIDMYGKCGQVGYARALFNGVEEKDVKIWSAMISTYAYVS 361
            LH+YLLRNGFGMSL L TALIDMYGKCGQV YARALFN V+EKDVKIWSA+IS YA+ S
Sbjct: 313 WLHSYLLRNGFGMSLTLTTALIDMYGKCGQVAYARALFNVVDEKDVKIWSALISAYAHTS 372

Query: 362 CIDQAFGLFLEMLDNEVKPNKVTMVSLLSSCAEVGALDLGKWTHAYIRRHDLEVDVILET 421
           CIDQAF LFL+MLD+EVKPNKVTMVSLLS CAEVGALDLG+WTHAYI  H +EVD++LET
Sbjct: 373 CIDQAFSLFLKMLDSEVKPNKVTMVSLLSLCAEVGALDLGRWTHAYIIHHGVEVDIVLET 432

Query: 422 ALINMYAKCGDLTIARSLFDEATRRDIHMWNAMMAGFSMHGCGTEALELFSEMESHGVKP 481
           ALINMYAKCGDL  ARSLFDEAT+RDIHMWNAMMAGFS+HGCG EALELFS+ME HGV+P
Sbjct: 433 ALINMYAKCGDLKTARSLFDEATQRDIHMWNAMMAGFSIHGCGKEALELFSDMECHGVEP 492

Query: 482 NDITFISIFHACSHSGLVADGKKHFNRMVHDFGIVPKIEHYGCLVDLLGRAGRLDEAHDI 541
           NDITFIS+FHACSHSGLV +G KHF+RMVH+FGIVPKIEHYGCLVDLLGRA RLD AH I
Sbjct: 493 NDITFISVFHACSHSGLVGEGMKHFDRMVHEFGIVPKIEHYGCLVDLLGRAKRLDAAHSI 552

Query: 542 IENMPMRPNTITWGALLAACKLHKNLALGEVAARKILELDPQNCGYSVLKSNIYASAKRW 601
           IENMPMRPNTI WGALLAACKLHKNL LG+VAARKILELDP+NCGY VLKSNIYAS KRW
Sbjct: 553 IENMPMRPNTIIWGALLAACKLHKNLPLGKVAARKILELDPENCGYRVLKSNIYASEKRW 612

Query: 602 NDVTSVRETMNHLGMKKEPGLSWIEVNGSIHHFKSGDKTCTQTTEVYEMVTEMCIKLREA 661
            +VTS+RE+M+HLGMKKEPGLSW EVNGS+HHF+SGDKTCTQ  +V+EMVTEMCIKLREA
Sbjct: 613 TNVTSIRESMSHLGMKKEPGLSWTEVNGSVHHFRSGDKTCTQARKVHEMVTEMCIKLREA 672

Query: 662 GYTPNTSAVLLNVEEEEKEFALSYHSEKLAMAFGLISMAPGTPIRIVKNLRICDDCHAAT 721
           GY PNTSAVLLNVE+EEKE ALSYHSEKLAMAFGLIS APGTPIRI+KNLRICDDCHAAT
Sbjct: 673 GYAPNTSAVLLNVEDEEKESALSYHSEKLAMAFGLISTAPGTPIRIIKNLRICDDCHAAT 732

Query: 722 KLLSKIYGRTIIVRDRNRFHHFSEGYCSCLGYW 755
           KLLSKIYGRTIIVRDRNRFHHFSEGYCSCLGYW
Sbjct: 733 KLLSKIYGRTIIVRDRNRFHHFSEGYCSCLGYW 764

[Close]
BLAST of Lsi06G007940 vs. NCBI nr
Match: XP_038879151.1 (pentatricopeptide repeat-containing protein At3g26782, mitochondrial-like [Benincasa hispida])

HSP 1 Score: 1403.3 bits (3631), Expect = 0.0e+00
Identity = 679/753 (90.17%), Postives = 708/753 (94.02%), Query Frame = 0 

Query: 2   GSGHSHLNLQHTQQIHAHFIKTQFHKPHPFFSQSHFTPEANYNLLISSYTNNQLPQASFR 61
           G GHSHL+LQ TQQIHAHFIKTQFH+PHPFFSQ+HF+PEANYNLLISSYTNN LPQASF+
Sbjct: 15  GHGHSHLSLQQTQQIHAHFIKTQFHRPHPFFSQTHFSPEANYNLLISSYTNNHLPQASFK 74

Query: 62  LYLHMRTTDPAAALDNFILPSLLKACAQASCGVWGRELHGFAVKNGFATDVFVCNALMNM 121
           LYLHMRTTD AAALDNFILPSLLKACAQASCGV GRELHGFA+KNGFA DVFVCNALMNM
Sbjct: 75  LYLHMRTTDAAAALDNFILPSLLKACAQASCGVLGRELHGFAIKNGFAPDVFVCNALMNM 134

Query: 122 YEKCGSLVSARLVFDKMPERDVVSWSTMLGCYVRSKSFGEALRLVGEMHFVGVKLSGVAL 181
           YEKCGSLV ARLVFDKMP+RDVVSWSTMLGCYVRSKS+ EAL LV EMHFVGVKLSGVAL
Sbjct: 135 YEKCGSLVFARLVFDKMPDRDVVSWSTMLGCYVRSKSYDEALVLVREMHFVGVKLSGVAL 194

Query: 182 ISVIGVFGELLDMKSGRAVHGYIVRNVGDVKMEVPLTTALINMYCKGECLESAQRLFDSL 241
           IS+IG FGELLDMKSGRAVHGYIVRNV D KMEVPLTTALINMYCKGE LESAQRLFD L
Sbjct: 195 ISMIGAFGELLDMKSGRAVHGYIVRNVVDEKMEVPLTTALINMYCKGERLESAQRLFDVL 254

Query: 242 SQRSVVSWTSMIAGCIHNCRLVEGAKNFNRMLEEKIFPNEITLLSLITACGFVRTLDLGK 301
            Q+SVVSWT MIAGCI NCRLVEGA NFNRMLEE++FPNEITLL+LIT CGFV TLDLGK
Sbjct: 255 PQKSVVSWTVMIAGCIRNCRLVEGANNFNRMLEEEVFPNEITLLNLITECGFVGTLDLGK 314

Query: 302 CLHAYLLRNGFGMSLALATALIDMYGKCGQVGYARALFNGVEEKDVKIWSAMISTYAYVS 361
             HAYLLRN FGMSLAL TALIDMYGKCGQVGYARALFNG+EEKDVKIWSA++  YA+ S
Sbjct: 315 WFHAYLLRNEFGMSLALVTALIDMYGKCGQVGYARALFNGIEEKDVKIWSALLLAYAHAS 374

Query: 362 CIDQAFGLFLEMLDNEVKPNKVTMVSLLSSCAEVGALDLGKWTHAYIRRHDLEVDVILET 421
           CIDQAF LFLEMLD+EVKPNKVTMV LLS CAE GAL+LGKWTH YI RH LEVDV+LET
Sbjct: 375 CIDQAFNLFLEMLDSEVKPNKVTMVGLLSLCAEAGALNLGKWTHTYINRHGLEVDVVLET 434

Query: 422 ALINMYAKCGDLTIARSLFDEATRRDIHMWNAMMAGFSMHGCGTEALELFSEMESHGVKP 481
           ALINMYAKCGDLTIARSLFDEAT+RDIHMWNAMMAGFSMHGCG EALELFSEME +GV+P
Sbjct: 435 ALINMYAKCGDLTIARSLFDEATQRDIHMWNAMMAGFSMHGCGKEALELFSEMEGYGVEP 494

Query: 482 NDITFISIFHACSHSGLVADGKKHFNRMVHDFGIVPKIEHYGCLVDLLGRAGRLDEAHDI 541
           NDITFIS+FHACSHSGLV DGKKHFNRMVHDFGIVPKIEHYGCLVDLLGRAG LDEAH+I
Sbjct: 495 NDITFISVFHACSHSGLVVDGKKHFNRMVHDFGIVPKIEHYGCLVDLLGRAGHLDEAHNI 554

Query: 542 IENMPMRPNTITWGALLAACKLHKNLALGEVAARKILELDPQNCGYSVLKSNIYASAKRW 601
           IENMPM+PNTI WGALLAACKLHKNLALGEVAARKILELDPQNCGYSVLKSNIYASAKRW
Sbjct: 555 IENMPMKPNTIIWGALLAACKLHKNLALGEVAARKILELDPQNCGYSVLKSNIYASAKRW 614

Query: 602 NDVTSVRETMNHLGMKKEPGLSWIEVNGSIHHFKSGDKTCTQTTEVYEMVTEMCIKLREA 661
            DVTSVRETM+HLGMKKEPGLSWIEVNGS+HHFKSGDKTCTQTTEVYEMVTEMCIKLRE 
Sbjct: 615 TDVTSVRETMSHLGMKKEPGLSWIEVNGSVHHFKSGDKTCTQTTEVYEMVTEMCIKLRET 674

Query: 662 GYTPNTSAVLLNVEEEEKEFALSYHSEKLAMAFGLISMAPGTPIRIVKNLRICDDCHAAT 721
           GYTPNTSAVLLNVEEEEKE  LSYHSEKLAMAFGLIS APGTPIRIVKNLRICDDCHAAT
Sbjct: 675 GYTPNTSAVLLNVEEEEKESTLSYHSEKLAMAFGLISTAPGTPIRIVKNLRICDDCHAAT 734

Query: 722 KLLSKIYGRTIIVRDRNRFHHFSEGYCSCLGYW 755
           KLLSKIYGRTIIVRDRNRFHHFSEG+CSCLGYW
Sbjct: 735 KLLSKIYGRTIIVRDRNRFHHFSEGFCSCLGYW 767

[Close]
BLAST of Lsi06G007940 vs. NCBI nr
Match: KAA0062552.1 (pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYK28774.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 1386.7 bits (3588), Expect = 0.0e+00
Identity = 673/752 (89.49%), Postives = 701/752 (93.22%), Query Frame = 0 

Query: 3   SGHSHLNLQHTQQIHAHFIKTQFHKPHPFFSQSHFTPEANYNLLISSYTNNQLPQASFRL 62
           SG+SHLNLQ T Q+HAHFIKTQFH PHPFFSQSHFTPEANYNLLISSYTNN LPQAS   
Sbjct: 15  SGYSHLNLQQTHQLHAHFIKTQFHNPHPFFSQSHFTPEANYNLLISSYTNNHLPQASLNC 74

Query: 63  YLHMRTTDPAAALDNFILPSLLKACAQASCGVWGRELHGFAVKNGFATDVFVCNALMNMY 122
           YLHMRT D AAALDNFILPSLLKACAQAS    GRELHGFA KNGFA+DVFVCNALMNMY
Sbjct: 75  YLHMRTNDAAAALDNFILPSLLKACAQASSADLGRELHGFAQKNGFASDVFVCNALMNMY 134

Query: 123 EKCGSLVSARLVFDKMPERDVVSWSTMLGCYVRSKSFGEALRLVGEMHFVGVKLSGVALI 182
           EKCG LVSA LVFDKMPERDVVSWSTMLGCYVRSK+FGEALRLV EM FVGVKLSGVALI
Sbjct: 135 EKCGCLVSASLVFDKMPERDVVSWSTMLGCYVRSKAFGEALRLVREMQFVGVKLSGVALI 194

Query: 183 SVIGVFGELLDMKSGRAVHGYIVRNVGDVKMEVPLTTALINMYCKGECLESAQRLFDSLS 242
           S+IGVFG LLDMKSGRAVHGYIVRNVGD KMEV LTTALI+MYCK ECL SAQRLFD LS
Sbjct: 195 SLIGVFGNLLDMKSGRAVHGYIVRNVGDEKMEVSLTTALIDMYCKCECLASAQRLFDRLS 254

Query: 243 QRSVVSWTSMIAGCIHNCRLVEGAKNFNRMLEEKIFPNEITLLSLITACGFVRTLDLGKC 302
           +RSVVSWT MI GCI +CRLVEGAKNFNRMLEEK+FPNEITLLSLIT CGFV+TLDLGK 
Sbjct: 255 KRSVVSWTVMIKGCIRSCRLVEGAKNFNRMLEEKLFPNEITLLSLITECGFVKTLDLGKW 314

Query: 303 LHAYLLRNGFGMSLALATALIDMYGKCGQVGYARALFNGVEEKDVKIWSAMISTYAYVSC 362
            HAYLLRNGFGMSLAL TALIDMYGKCGQVGYARALFNGVE+KDVKIWSA+IS YA+VSC
Sbjct: 315 FHAYLLRNGFGMSLALVTALIDMYGKCGQVGYARALFNGVEKKDVKIWSALISAYAHVSC 374

Query: 363 IDQAFGLFLEMLDNEVKPNKVTMVSLLSSCAEVGALDLGKWTHAYIRRHDLEVDVILETA 422
           +DQ F LFLEMLDNEVKPNKVTMVSLLS CAE G LDLGKWTHAYI RH LEVDVILETA
Sbjct: 375 MDQVFNLFLEMLDNEVKPNKVTMVSLLSLCAEAGTLDLGKWTHAYINRHGLEVDVILETA 434

Query: 423 LINMYAKCGDLTIARSLFDEATRRDIHMWNAMMAGFSMHGCGTEALELFSEMESHGVKPN 482
           LINMY KCGD+TIARSLFDEAT+RDIHMWNAMMAGFSMHGCG EALELFSEMESHGV+PN
Sbjct: 435 LINMYVKCGDVTIARSLFDEATQRDIHMWNAMMAGFSMHGCGKEALELFSEMESHGVEPN 494

Query: 483 DITFISIFHACSHSGLVADGKKHFNRMVHDFGIVPKIEHYGCLVDLLGRAGRLDEAHDII 542
           DITFISIFHACSHSGLV +GKKHFNRMVH FGIVPK+EHYGCLVDLLGRAG L+EAH+II
Sbjct: 495 DITFISIFHACSHSGLVVEGKKHFNRMVHSFGIVPKMEHYGCLVDLLGRAGHLEEAHNII 554

Query: 543 ENMPMRPNTITWGALLAACKLHKNLALGEVAARKILELDPQNCGYSVLKSNIYASAKRWN 602
           ENMPMRPNTI WGALLAACKLHKNLALGEVAARKILELDPQNCGYSVLKSNIYASAKRWN
Sbjct: 555 ENMPMRPNTIIWGALLAACKLHKNLALGEVAARKILELDPQNCGYSVLKSNIYASAKRWN 614

Query: 603 DVTSVRETMNHLGMKKEPGLSWIEVNGSIHHFKSGDKTCTQTTEVYEMVTEMCIKLREAG 662
           DVTSVRETM+HLGMKKEPGLSWIEVNGS+HHFKSGDKTCTQTT+VYEMV EMCIKLREAG
Sbjct: 615 DVTSVRETMSHLGMKKEPGLSWIEVNGSVHHFKSGDKTCTQTTKVYEMVAEMCIKLREAG 674

Query: 663 YTPNTSAVLLNVEEEEKEFALSYHSEKLAMAFGLISMAPGTPIRIVKNLRICDDCHAATK 722
           YTPNT+ VLLN++EEEKE ALSYHSEKLAMAFGLIS APGTPIRI+KNLRICDDCHAA K
Sbjct: 675 YTPNTAEVLLNIDEEEKESALSYHSEKLAMAFGLISTAPGTPIRIIKNLRICDDCHAAMK 734

Query: 723 LLSKIYGRTIIVRDRNRFHHFSEGYCSCLGYW 755
           LLSKIY RTIIVRDRNRFHHFSEGYCSCLGYW
Sbjct: 735 LLSKIYARTIIVRDRNRFHHFSEGYCSCLGYW 766

[Close]
BLAST of Lsi06G007940 vs. NCBI nr
Match: XP_008462708.1 (PREDICTED: pentatricopeptide repeat-containing protein At3g26782, mitochondrial-like [Cucumis melo])

HSP 1 Score: 1385.9 bits (3586), Expect = 0.0e+00
Identity = 672/752 (89.36%), Postives = 702/752 (93.35%), Query Frame = 0 

Query: 3   SGHSHLNLQHTQQIHAHFIKTQFHKPHPFFSQSHFTPEANYNLLISSYTNNQLPQASFRL 62
           SG+SHLNLQ T Q+HAHFIKTQFH PHPFFSQSHFTPEANYNLLISSYTNN LPQAS   
Sbjct: 15  SGYSHLNLQQTHQLHAHFIKTQFHNPHPFFSQSHFTPEANYNLLISSYTNNHLPQASLNC 74

Query: 63  YLHMRTTDPAAALDNFILPSLLKACAQASCGVWGRELHGFAVKNGFATDVFVCNALMNMY 122
           YLHMRT D AAALDNFILPSLLKACAQAS    GRELHGFA KNGFA+DVFVCNALMNMY
Sbjct: 75  YLHMRTNDAAAALDNFILPSLLKACAQASSADLGRELHGFAQKNGFASDVFVCNALMNMY 134

Query: 123 EKCGSLVSARLVFDKMPERDVVSWSTMLGCYVRSKSFGEALRLVGEMHFVGVKLSGVALI 182
           EKCG LVSA LVFDKMPERDVVSWSTMLGCYVRSK+FGEALRLV EM FVGVKLSGVALI
Sbjct: 135 EKCGCLVSASLVFDKMPERDVVSWSTMLGCYVRSKAFGEALRLVREMQFVGVKLSGVALI 194

Query: 183 SVIGVFGELLDMKSGRAVHGYIVRNVGDVKMEVPLTTALINMYCKGECLESAQRLFDSLS 242
           S+IGVFG LLDMKSGRAVHGYI+RNVGD KMEV LTTALI+MYCK ECL SAQRLFD LS
Sbjct: 195 SLIGVFGNLLDMKSGRAVHGYIMRNVGDEKMEVSLTTALIDMYCKCECLASAQRLFDRLS 254

Query: 243 QRSVVSWTSMIAGCIHNCRLVEGAKNFNRMLEEKIFPNEITLLSLITACGFVRTLDLGKC 302
           +RSVVSWT MI GCI +CRLVEGAKNFNRMLEEK+FPNEITLLSLIT CGFV+TLDLGK 
Sbjct: 255 KRSVVSWTVMIKGCIRSCRLVEGAKNFNRMLEEKLFPNEITLLSLITECGFVKTLDLGKW 314

Query: 303 LHAYLLRNGFGMSLALATALIDMYGKCGQVGYARALFNGVEEKDVKIWSAMISTYAYVSC 362
            HAYLLRNGFGMSLAL TALIDMYGKCGQVGYARALFNGVE+KDVKIWSA+IS YA+VSC
Sbjct: 315 FHAYLLRNGFGMSLALVTALIDMYGKCGQVGYARALFNGVEKKDVKIWSALISAYAHVSC 374

Query: 363 IDQAFGLFLEMLDNEVKPNKVTMVSLLSSCAEVGALDLGKWTHAYIRRHDLEVDVILETA 422
           +DQ F LFLEMLDNEVKPNKVTMVSLLS CAE G LDLGKWTHAYI RH LEVDVILETA
Sbjct: 375 MDQVFNLFLEMLDNEVKPNKVTMVSLLSLCAEAGTLDLGKWTHAYINRHGLEVDVILETA 434

Query: 423 LINMYAKCGDLTIARSLFDEATRRDIHMWNAMMAGFSMHGCGTEALELFSEMESHGVKPN 482
           LINMY KCGD+TIARSLFDEAT+RDIHMWNAMMAGFSMHGCG EALELFSEMESHGV+PN
Sbjct: 435 LINMYVKCGDVTIARSLFDEATQRDIHMWNAMMAGFSMHGCGKEALELFSEMESHGVEPN 494

Query: 483 DITFISIFHACSHSGLVADGKKHFNRMVHDFGIVPKIEHYGCLVDLLGRAGRLDEAHDII 542
           DITFISIFHACSHSGLV +GKKHFNRMVH+FGIVPK+EHYGCLVDLLGRAG L+EAH+II
Sbjct: 495 DITFISIFHACSHSGLVVEGKKHFNRMVHNFGIVPKMEHYGCLVDLLGRAGHLEEAHNII 554

Query: 543 ENMPMRPNTITWGALLAACKLHKNLALGEVAARKILELDPQNCGYSVLKSNIYASAKRWN 602
           ENMPMRPNTI WGALLAACKLHKNLALGEVAARKILELDPQNCGYSVLKSNIYASAKRWN
Sbjct: 555 ENMPMRPNTIIWGALLAACKLHKNLALGEVAARKILELDPQNCGYSVLKSNIYASAKRWN 614

Query: 603 DVTSVRETMNHLGMKKEPGLSWIEVNGSIHHFKSGDKTCTQTTEVYEMVTEMCIKLREAG 662
           DVTSVRETM+HLGMKKEPGLSWIEVNGS+HHFKSGDKTCTQTT+VYEMV EMCIKLREAG
Sbjct: 615 DVTSVRETMSHLGMKKEPGLSWIEVNGSVHHFKSGDKTCTQTTKVYEMVAEMCIKLREAG 674

Query: 663 YTPNTSAVLLNVEEEEKEFALSYHSEKLAMAFGLISMAPGTPIRIVKNLRICDDCHAATK 722
           YTPNT+ VLLN++EEEKE ALSYHSEKLAMAFGLIS APGTPIRI+KNLRICDDCHAA K
Sbjct: 675 YTPNTAEVLLNIDEEEKESALSYHSEKLAMAFGLISTAPGTPIRIIKNLRICDDCHAAMK 734

Query: 723 LLSKIYGRTIIVRDRNRFHHFSEGYCSCLGYW 755
           LLSKIY RTIIVRDRNRFHHFSEGYCSCLGYW
Sbjct: 735 LLSKIYARTIIVRDRNRFHHFSEGYCSCLGYW 766

[Close]
BLAST of Lsi06G007940 vs. NCBI nr
Match: XP_011660280.1 (pentatricopeptide repeat-containing protein At3g26782, mitochondrial [Cucumis sativus])

HSP 1 Score: 1364.4 bits (3530), Expect = 0.0e+00
Identity = 661/752 (87.90%), Postives = 700/752 (93.09%), Query Frame = 0 

Query: 3   SGHSHLNLQHTQQIHAHFIKTQFHKPHPFFSQSHFTPEANYNLLISSYTNNQLPQASFRL 62
           SGHSHLNLQ T Q+HAHFIKTQFH PHPFFSQSHFTPEANYNLLISSYTNN LPQASF  
Sbjct: 15  SGHSHLNLQQTHQLHAHFIKTQFHNPHPFFSQSHFTPEANYNLLISSYTNNHLPQASFNC 74

Query: 63  YLHMRTTDPAAALDNFILPSLLKACAQASCGVWGRELHGFAVKNGFATDVFVCNALMNMY 122
           YLHMR+ D AAALDNFILPSLLKACAQAS G  GRELHGFA KNGFA+DVFVCNALMNMY
Sbjct: 75  YLHMRSND-AAALDNFILPSLLKACAQASSGDLGRELHGFAQKNGFASDVFVCNALMNMY 134

Query: 123 EKCGSLVSARLVFDKMPERDVVSWSTMLGCYVRSKSFGEALRLVGEMHFVGVKLSGVALI 182
           EKCG LVSARLVFD+MPERDVVSW+TMLGCYVRSK+FGEALRLV EM FVGVKLSGVALI
Sbjct: 135 EKCGCLVSARLVFDQMPERDVVSWTTMLGCYVRSKAFGEALRLVREMQFVGVKLSGVALI 194

Query: 183 SVIGVFGELLDMKSGRAVHGYIVRNVGDVKMEVPLTTALINMYCKGECLESAQRLFDSLS 242
           S+I VFG LLDMKSGRAVHGYIVRNVGD KMEV +TTALI+MYCKG CL SAQRLFD LS
Sbjct: 195 SLIAVFGNLLDMKSGRAVHGYIVRNVGDEKMEVSMTTALIDMYCKGGCLASAQRLFDRLS 254

Query: 243 QRSVVSWTSMIAGCIHNCRLVEGAKNFNRMLEEKIFPNEITLLSLITACGFVRTLDLGKC 302
           +RSVVSWT MIAGCI +CRL EGAKNFNRMLEEK+FPNEITLLSLIT CGFV TLDLGK 
Sbjct: 255 KRSVVSWTVMIAGCIRSCRLDEGAKNFNRMLEEKLFPNEITLLSLITECGFVGTLDLGKW 314

Query: 303 LHAYLLRNGFGMSLALATALIDMYGKCGQVGYARALFNGVEEKDVKIWSAMISTYAYVSC 362
            HAYLLRNGFGMSLAL TALIDMYGKCGQVGYARALFNGV++KDVKIWS +IS YA+VSC
Sbjct: 315 FHAYLLRNGFGMSLALVTALIDMYGKCGQVGYARALFNGVKKKDVKIWSVLISAYAHVSC 374

Query: 363 IDQAFGLFLEMLDNEVKPNKVTMVSLLSSCAEVGALDLGKWTHAYIRRHDLEVDVILETA 422
           +DQ F LF+EML+N+VKPN VTMVSLLS CAE GALDLGKWTHAYI RH LEVDVILETA
Sbjct: 375 MDQVFNLFVEMLNNDVKPNNVTMVSLLSLCAEAGALDLGKWTHAYINRHGLEVDVILETA 434

Query: 423 LINMYAKCGDLTIARSLFDEATRRDIHMWNAMMAGFSMHGCGTEALELFSEMESHGVKPN 482
           LINMYAKCGD+TIARSLF+EA +RDI MWN MMAGFSMHGCG EALELFSEMESHGV+PN
Sbjct: 435 LINMYAKCGDVTIARSLFNEAMQRDIRMWNTMMAGFSMHGCGKEALELFSEMESHGVEPN 494

Query: 483 DITFISIFHACSHSGLVADGKKHFNRMVHDFGIVPKIEHYGCLVDLLGRAGRLDEAHDII 542
           DITF+SIFHACSHSGLV +GKK+FN+MVHDFGIVPK+EHYGCLVDLLGRAG LDEAH+II
Sbjct: 495 DITFVSIFHACSHSGLVVEGKKYFNKMVHDFGIVPKMEHYGCLVDLLGRAGHLDEAHNII 554

Query: 543 ENMPMRPNTITWGALLAACKLHKNLALGEVAARKILELDPQNCGYSVLKSNIYASAKRWN 602
           ENMPMRPNTI WGALLAACKLHKNLALGEVAARKILELDPQNCGYSVLKSNIYASAKRWN
Sbjct: 555 ENMPMRPNTIIWGALLAACKLHKNLALGEVAARKILELDPQNCGYSVLKSNIYASAKRWN 614

Query: 603 DVTSVRETMNHLGMKKEPGLSWIEVNGSIHHFKSGDKTCTQTTEVYEMVTEMCIKLREAG 662
           DVTSVRE M+H GMKKEPGLSWIEV+GS+HHFKSGDK CTQTT+VYEMVTEMCIKLRE+G
Sbjct: 615 DVTSVREAMSHSGMKKEPGLSWIEVSGSVHHFKSGDKACTQTTKVYEMVTEMCIKLRESG 674

Query: 663 YTPNTSAVLLNVEEEEKEFALSYHSEKLAMAFGLISMAPGTPIRIVKNLRICDDCHAATK 722
           YTPNT+AVLLN++EEEKE ALSYHSEKLA AFGLIS APGTPIRIVKNLRICDDCHAATK
Sbjct: 675 YTPNTAAVLLNIDEEEKESALSYHSEKLATAFGLISTAPGTPIRIVKNLRICDDCHAATK 734

Query: 723 LLSKIYGRTIIVRDRNRFHHFSEGYCSCLGYW 755
           LLSKIYGRTIIVRDRNRFHHFSEGYCSC+GYW
Sbjct: 735 LLSKIYGRTIIVRDRNRFHHFSEGYCSCMGYW 765

[Close]
BLAST of Lsi06G007940 vs. NCBI nr
Match: XP_023533718.1 (pentatricopeptide repeat-containing protein At4g21065-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 1337.8 bits (3461), Expect = 0.0e+00
Identity = 649/752 (86.30%), Postives = 694/752 (92.29%), Query Frame = 0 

Query: 3   SGHSHLNLQHTQQIHAHFIKTQFHKPHPFFSQSHFTPEANYNLLISSYTNNQLPQASFRL 62
           SGHSHLNLQ T QIHAHFIKTQF  PH FFS+S+FTPEAN+NLLISSYT+N LPQA+F L
Sbjct: 14  SGHSHLNLQQTHQIHAHFIKTQFRNPHSFFSRSNFTPEANFNLLISSYTDNHLPQAAFNL 73

Query: 63  YLHMRTTDPAAALDNFILPSLLKACAQASCGVWGRELHGFAVKNGFATDVFVCNALMNMY 122
           Y HMRTTD AAA+DNFI+PSLLKACAQAS   +GRE+HGFAVKNGF +DVFVCNALMNMY
Sbjct: 74  YHHMRTTD-AAAVDNFIVPSLLKACAQASSTNFGREVHGFAVKNGFVSDVFVCNALMNMY 133

Query: 123 EKCGSLVSARLVFDKMPERDVVSWSTMLGCYVRSKSFGEALRLVGEMHFVGVKLSGVALI 182
           EKCGSLVSA LVFDKMP+RDVVSWSTMLGCYVRSKSFGEA RLV EMHFVGV+LS VALI
Sbjct: 134 EKCGSLVSACLVFDKMPDRDVVSWSTMLGCYVRSKSFGEAYRLVREMHFVGVRLSDVALI 193

Query: 183 SVIGVFGELLDMKSGRAVHGYIVRNVGDVKMEVPLTTALINMYCKGECLESAQRLFDSLS 242
           S+IGVFGEL DMKSGRA+HGY+VRNVG+ +MEVPLTTALI+MYCKG+ L SA RLFD LS
Sbjct: 194 SMIGVFGELSDMKSGRAIHGYVVRNVGNERMEVPLTTALIDMYCKGDNLASAMRLFDGLS 253

Query: 243 QRSVVSWTSMIAGCIHNCRLVEGAKNFNRMLEEKIFPNEITLLSLITACGFVRTLDLGKC 302
           QR+VVSWT++IAGCI +CR  EGAKNF+RMLEE I PNEITLLSLIT CGFV  LDLGK 
Sbjct: 254 QRNVVSWTALIAGCIRSCRFDEGAKNFSRMLEENIVPNEITLLSLITECGFVGALDLGKW 313

Query: 303 LHAYLLRNGFGMSLALATALIDMYGKCGQVGYARALFNGVEEKDVKIWSAMISTYAYVSC 362
           LHAYLLRNGFGMSLALATALIDMYGKCGQV YARALFNGVEEKDVKIWSA+IS YA+ SC
Sbjct: 314 LHAYLLRNGFGMSLALATALIDMYGKCGQVAYARALFNGVEEKDVKIWSALISAYAHASC 373

Query: 363 IDQAFGLFLEMLDNEVKPNKVTMVSLLSSCAEVGALDLGKWTHAYIRRHDLEVDVILETA 422
           IDQAFGLFL+MLD+EVKPNKVTMVSLLS CAEVGALDLG+WTHAYI RH LEVDV+LETA
Sbjct: 374 IDQAFGLFLKMLDSEVKPNKVTMVSLLSLCAEVGALDLGRWTHAYINRHGLEVDVVLETA 433

Query: 423 LINMYAKCGDLTIARSLFDEATRRDIHMWNAMMAGFSMHGCGTEALELFSEMESHGVKPN 482
           LINMYAKCGDL  ARSLFDEATRRDIHMWNAMMAGFS+HGCG EALELF +ME HGV+PN
Sbjct: 434 LINMYAKCGDLKTARSLFDEATRRDIHMWNAMMAGFSIHGCGKEALELFLDMECHGVEPN 493

Query: 483 DITFISIFHACSHSGLVADGKKHFNRMVHDFGIVPKIEHYGCLVDLLGRAGRLDEAHDII 542
           DITFIS+FHACSHSGLV +G KHF+RMVH+FGIVPKIEHYGCLVDLLGRA RLD AH II
Sbjct: 494 DITFISLFHACSHSGLVGEGMKHFDRMVHEFGIVPKIEHYGCLVDLLGRAKRLDAAHSII 553

Query: 543 ENMPMRPNTITWGALLAACKLHKNLALGEVAARKILELDPQNCGYSVLKSNIYASAKRWN 602
           ENMPMRPNTI WGALLAACKLHKNL LGEVAARKILELDP+NCGY VLKSNIYAS KRW 
Sbjct: 554 ENMPMRPNTIVWGALLAACKLHKNLTLGEVAARKILELDPENCGYRVLKSNIYASEKRWT 613

Query: 603 DVTSVRETMNHLGMKKEPGLSWIEVNGSIHHFKSGDKTCTQTTEVYEMVTEMCIKLREAG 662
           DVTSVRETM+HLGMKKEPGLSWIEVNGS+HHF+SGDKTCTQT +V+EMVTEMCIKLREAG
Sbjct: 614 DVTSVRETMSHLGMKKEPGLSWIEVNGSVHHFRSGDKTCTQTRKVHEMVTEMCIKLREAG 673

Query: 663 YTPNTSAVLLNVEEEEKEFALSYHSEKLAMAFGLISMAPGTPIRIVKNLRICDDCHAATK 722
           Y PNTSAVLLNVE+EEKE ALSYHSEKLAMAFGLIS APGTPIRI+KNLRICDDCHAATK
Sbjct: 674 YAPNTSAVLLNVEDEEKESALSYHSEKLAMAFGLISTAPGTPIRIIKNLRICDDCHAATK 733

Query: 723 LLSKIYGRTIIVRDRNRFHHFSEGYCSCLGYW 755
           LLSKIYGRTIIVRDRNRFHHF EGYCSCLGYW
Sbjct: 734 LLSKIYGRTIIVRDRNRFHHFREGYCSCLGYW 764

[Close]
BLAST of Lsi06G007940 vs. TAIR 10
Match: AT1G11290.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 557.8 bits (1436), Expect = 1.4e-158
Identity = 283/712 (39.75%), Postives = 425/712 (59.69%), Query Frame = 0 

Query: 43  YNLLISSYTNNQLPQASFRLYLHMRTTDPAAALDNFILPSLLKACAQASCGVWGRELHGF 102
           Y+ ++  +        + + ++ MR  D    + NF    LLK C   +    G+E+HG 
Sbjct: 103 YHTMLKGFAKVSDLDKALQFFVRMRYDDVEPVVYNFTY--LLKVCGDEAELRVGKEIHGL 162

Query: 103 AVKNGFATDVFVCNALMNMYEKCGSLVSARLVFDKMPERDVVSWSTMLGCYVRSKSFGEA 162
            VK+GF+ D+F    L NMY KC  +  AR VFD+MPERD+VSW+T++  Y ++     A
Sbjct: 163 LVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQNGMARMA 222

Query: 163 LRLVGEMHFVGVKLSGVALISVIGVFGELLDMKSGRAVHGYIVRNVGDVKMEVPLTTALI 222
           L +V  M    +K S + ++SV+     L  +  G+ +HGY +R+  D    V ++TAL+
Sbjct: 223 LEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFD--SLVNISTALV 282

Query: 223 NMYCKGECLESAQRLFDSLSQRSVVSWTSMIAGCIHNCRLVEGAKNFNRMLEEKIFPNEI 282
           +MY K   LE+A++LFD + +R+VVSW SMI   + N    E    F +ML+E + P ++
Sbjct: 283 DMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDV 342

Query: 283 TLLSLITACGFVRTLDLGKCLHAYLLRNGFGMSLALATALIDMYGKCGQVGYARALFNGV 342
           +++  + AC  +  L+ G+ +H   +  G   ++++  +LI MY KC +V  A ++F  +
Sbjct: 343 SVMGALHACADLGDLERGRFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAASMFGKL 402

Query: 343 EEKDVKIWSAMISTYAYVSCIDQAFGLFLEMLDNEVKPNKVTMVSLLSSCAEVGALDLGK 402
           + + +  W+AMI  +A       A   F +M    VKP+  T VS++++ AE+      K
Sbjct: 403 QSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITAIAELSITHHAK 462

Query: 403 WTHAYIRRHDLEVDVILETALINMYAKCGDLTIARSLFDEATRRDIHMWNAMMAGFSMHG 462
           W H  + R  L+ +V + TAL++MYAKCG + IAR +FD  + R +  WNAM+ G+  HG
Sbjct: 463 WIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHG 522

Query: 463 CGTEALELFSEMESHGVKPNDITFISIFHACSHSGLVADGKKHFNRMVHDFGIVPKIEHY 522
            G  ALELF EM+   +KPN +TF+S+  ACSHSGLV  G K F  M  ++ I   ++HY
Sbjct: 523 FGKAALELFEEMQKGTIKPNGVTFLSVISACSHSGLVEAGLKCFYMMKENYSIELSMDHY 582

Query: 523 GCLVDLLGRAGRLDEAHDIIENMPMRPNTITWGALLAACKLHKNLALGEVAARKILELDP 582
           G +VDLLGRAGRL+EA D I  MP++P    +GA+L AC++HKN+   E AA ++ EL+P
Sbjct: 583 GAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGACQIHKNVNFAEKAAERLFELNP 642

Query: 583 QNCGYSVLKSNIYASAKRWNDVTSVRETMNHLGMKKEPGLSWIEVNGSIHHFKSGDKTCT 642
            + GY VL +NIY +A  W  V  VR +M   G++K PG S +E+   +H F SG     
Sbjct: 643 DDGGYHVLLANIYRAASMWEKVGQVRVSMLRQGLRKTPGCSMVEIKNEVHSFFSGSTAHP 702

Query: 643 QTTEVYEMVTEMCIKLREAGYTPNTSAVLLNVEEEEKEFALSYHSEKLAMAFGLISMAPG 702
            + ++Y  + ++   ++EAGY P+T+ V L VE + KE  LS HSEKLA++FGL++   G
Sbjct: 703 DSKKIYAFLEKLICHIKEAGYVPDTNLV-LGVENDVKEQLLSTHSEKLAISFGLLNTTAG 762

Query: 703 TPIRIVKNLRICDDCHAATKLLSKIYGRTIIVRDRNRFHHFSEGYCSCLGYW 755
           T I + KNLR+C DCH ATK +S + GR I+VRD  RFHHF  G CSC  YW
Sbjct: 763 TTIHVRKNLRVCADCHNATKYISLVTGREIVVRDMQRFHHFKNGACSCGDYW 809

[Close]
BLAST of Lsi06G007940 vs. TAIR 10
Match: AT3G22690.2 (INVOLVED IN: photosystem II assembly, regulation of chlorophyll biosynthetic process, photosystem I assembly, thylakoid membrane organization, RNA modification; LOCATED IN: chloroplast; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G29760.1). )

HSP 1 Score: 546.2 bits (1406), Expect = 4.1e-155
Identity = 293/745 (39.33%), Postives = 432/745 (57.99%), Query Frame = 0 

Query: 43  YNLLISSYTNNQLPQASFRLYLHMRTTDPAAALDNFILPSLLKACAQASCGVWGRELHGF 102
           YN LI  Y ++ L   +  L+L M  +    + D +  P  L ACA++     G ++HG 
Sbjct: 102 YNSLIRGYASSGLCNEAILLFLRMMNS--GISPDKYTFPFGLSACAKSRAKGNGIQIHGL 161

Query: 103 AVKNGFATDVFVCNALMNMYEKCGSLVSARLVFDKMPERDVVSWSTMLGCYVRSKSFGEA 162
            VK G+A D+FV N+L++ Y +CG L SAR VFD+M ER+VVSW++M+  Y R     +A
Sbjct: 162 IVKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDA 221

Query: 163 LRLVGEM-HFVGVKLSGVALISVIGVFGELLDMKSGRAVHGYIVRNVGDVKMEVPLTTAL 222
           + L   M     V  + V ++ VI    +L D+++G  V+ +I RN G +++   + +AL
Sbjct: 222 VDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFI-RNSG-IEVNDLMVSAL 281

Query: 223 INMYCKGECLESAQRLFDSLSQRSVVSWTSMIAGCIHNCRLVEGAKNFNRMLEEKIFPNE 282
           ++MY K   ++ A+RLFD     ++    +M +  +      E    FN M++  + P+ 
Sbjct: 282 VDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPDR 341

Query: 283 ITLLSLITACGFVRTLDLGKCLHAYLLRNGFGMSLALATALIDMYGKC------------ 342
           I++LS I++C  +R +  GK  H Y+LRNGF     +  ALIDMY KC            
Sbjct: 342 ISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDR 401

Query: 343 -------------------GQVGYARALFNGVEEKDVKIWSAMISTYAYVSCIDQAFGLF 402
                              G+V  A   F  + EK++  W+ +IS     S  ++A  +F
Sbjct: 402 MSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVF 461

Query: 403 LEMLDNE-VKPNKVTMVSLLSSCAEVGALDLGKWTHAYIRRHDLEVDVILETALINMYAK 462
             M   E V  + VTM+S+ S+C  +GALDL KW + YI ++ +++DV L T L++M+++
Sbjct: 462 CSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYYYIEKNGIQLDVRLGTTLVDMFSR 521

Query: 463 CGDLTIARSLFDEATRRDIHMWNAMMAGFSMHGCGTEALELFSEMESHGVKPNDITFISI 522
           CGD   A S+F+  T RD+  W A +   +M G    A+ELF +M   G+KP+ + F+  
Sbjct: 522 CGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNAERAIELFDDMIEQGLKPDGVAFVGA 581

Query: 523 FHACSHSGLVADGKKHFNRMVHDFGIVPKIEHYGCLVDLLGRAGRLDEAHDIIENMPMRP 582
             ACSH GLV  GK+ F  M+   G+ P+  HYGC+VDLLGRAG L+EA  +IE+MPM P
Sbjct: 582 LTACSHGGLVQQGKEIFYSMLKLHGVSPEDVHYGCMVDLLGRAGLLEEAVQLIEDMPMEP 641

Query: 583 NTITWGALLAACKLHKNLALGEVAARKILELDPQNCGYSVLKSNIYASAKRWNDVTSVRE 642
           N + W +LLAAC++  N+ +   AA KI  L P+  G  VL SN+YASA RWND+  VR 
Sbjct: 642 NDVIWNSLLAACRVQGNVEMAAYAAEKIQVLAPERTGSYVLLSNVYASAGRWNDMAKVRL 701

Query: 643 TMNHLGMKKEPGLSWIEVNGSIHHFKSGDKTCTQTTEVYEMVTEMCIKLREAGYTPNTSA 702
           +M   G++K PG S I++ G  H F SGD++  +   +  M+ E+  +    G+ P+ S 
Sbjct: 702 SMKEKGLRKPPGTSSIQIRGKTHEFTSGDESHPEMPNIEAMLDEVSQRASHLGHVPDLSN 761

Query: 703 VLLNVEEEEKEFALSYHSEKLAMAFGLISMAPGTPIRIVKNLRICDDCHAATKLLSKIYG 755
           VL++V+E+EK F LS HSEKLAMA+GLIS   GT IRIVKNLR+C DCH+  K  SK+Y 
Sbjct: 762 VLMDVDEKEKIFMLSRHSEKLAMAYGLISSNKGTTIRIVKNLRVCSDCHSFAKFASKVYN 821

[Close]
BLAST of Lsi06G007940 vs. TAIR 10
Match: AT3G22690.1 (CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1685 (InterPro:IPR012881), Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G29760.1); Has 49784 Blast hits to 14716 proteins in 280 species: Archae - 2; Bacteria - 10; Metazoa - 107; Fungi - 167; Plants - 48594; Viruses - 0; Other Eukaryotes - 904 (source: NCBI BLink). )

HSP 1 Score: 542.7 bits (1397), Expect = 4.6e-154
Identity = 292/741 (39.41%), Postives = 430/741 (58.03%), Query Frame = 0 

Query: 43  YNLLISSYTNNQLPQASFRLYLHMRTTDPAAALDNFILPSLLKACAQASCGVWGRELHGF 102
           YN LI  Y ++ L   +  L+L M  +    + D +  P  L ACA++     G ++HG 
Sbjct: 102 YNSLIRGYASSGLCNEAILLFLRMMNS--GISPDKYTFPFGLSACAKSRAKGNGIQIHGL 161

Query: 103 AVKNGFATDVFVCNALMNMYEKCGSLVSARLVFDKMPERDVVSWSTMLGCYVRSKSFGEA 162
            VK G+A D+FV N+L++ Y +CG L SAR VFD+M ER+VVSW++M+  Y R     +A
Sbjct: 162 IVKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDA 221

Query: 163 LRLVGEM-HFVGVKLSGVALISVIGVFGELLDMKSGRAVHGYIVRNVGDVKMEVPLTTAL 222
           + L   M     V  + V ++ VI    +L D+++G  V+ +I RN G +++   + +AL
Sbjct: 222 VDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFI-RNSG-IEVNDLMVSAL 281

Query: 223 INMYCKGECLESAQRLFDSLSQRSVVSWTSMIAGCIHNCRLVEGAKNFNRMLEEKIFPNE 282
           ++MY K   ++ A+RLFD     ++    +M +  +      E    FN M++  + P+ 
Sbjct: 282 VDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPDR 341

Query: 283 ITLLSLITACGFVRTLDLGKCLHAYLLRNGFGMSLALATALIDMYGKC------------ 342
           I++LS I++C  +R +  GK  H Y+LRNGF     +  ALIDMY KC            
Sbjct: 342 ISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDR 401

Query: 343 -------------------GQVGYARALFNGVEEKDVKIWSAMISTYAYVSCIDQAFGLF 402
                              G+V  A   F  + EK++  W+ +IS     S  ++A  +F
Sbjct: 402 MSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVF 461

Query: 403 LEMLDNE-VKPNKVTMVSLLSSCAEVGALDLGKWTHAYIRRHDLEVDVILETALINMYAK 462
             M   E V  + VTM+S+ S+C  +GALDL KW + YI ++ +++DV L T L++M+++
Sbjct: 462 CSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYYYIEKNGIQLDVRLGTTLVDMFSR 521

Query: 463 CGDLTIARSLFDEATRRDIHMWNAMMAGFSMHGCGTEALELFSEMESHGVKPNDITFISI 522
           CGD   A S+F+  T RD+  W A +   +M G    A+ELF +M   G+KP+ + F+  
Sbjct: 522 CGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNAERAIELFDDMIEQGLKPDGVAFVGA 581

Query: 523 FHACSHSGLVADGKKHFNRMVHDFGIVPKIEHYGCLVDLLGRAGRLDEAHDIIENMPMRP 582
             ACSH GLV  GK+ F  M+   G+ P+  HYGC+VDLLGRAG L+EA  +IE+MPM P
Sbjct: 582 LTACSHGGLVQQGKEIFYSMLKLHGVSPEDVHYGCMVDLLGRAGLLEEAVQLIEDMPMEP 641

Query: 583 NTITWGALLAACKLHKNLALGEVAARKILELDPQNCGYSVLKSNIYASAKRWNDVTSVRE 642
           N + W +LLAAC++  N+ +   AA KI  L P+  G  VL SN+YASA RWND+  VR 
Sbjct: 642 NDVIWNSLLAACRVQGNVEMAAYAAEKIQVLAPERTGSYVLLSNVYASAGRWNDMAKVRL 701

Query: 643 TMNHLGMKKEPGLSWIEVNGSIHHFKSGDKTCTQTTEVYEMVTEMCIKLREAGYTPNTSA 702
           +M   G++K PG S I++ G  H F SGD++  +   +  M+ E+  +    G+ P+ S 
Sbjct: 702 SMKEKGLRKPPGTSSIQIRGKTHEFTSGDESHPEMPNIEAMLDEVSQRASHLGHVPDLSN 761

Query: 703 VLLNVEEEEKEFALSYHSEKLAMAFGLISMAPGTPIRIVKNLRICDDCHAATKLLSKIYG 751
           VL++V+E+EK F LS HSEKLAMA+GLIS   GT IRIVKNLR+C DCH+  K  SK+Y 
Sbjct: 762 VLMDVDEKEKIFMLSRHSEKLAMAYGLISSNKGTTIRIVKNLRVCSDCHSFAKFASKVYN 821

[Close]
BLAST of Lsi06G007940 vs. TAIR 10
Match: AT1G08070.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 540.4 bits (1391), Expect = 2.3e-153
Identity = 294/775 (37.94%), Postives = 430/775 (55.48%), Query Frame = 0 

Query: 5   HSHLNLQHTQQIHAHFIKTQFHKPHPFFSQ--------SHF------------TPEAN-- 64
           H+   LQ  + IHA  IK   H  +   S+         HF              E N  
Sbjct: 41  HNCKTLQSLRIIHAQMIKIGLHNTNYALSKLIEFCILSPHFEGLPYAISVFKTIQEPNLL 100

Query: 65  -YNLLISSYTNNQLPQASFRLYLHMRTTDPAAALDNFILPSLLKACAQASCGVWGRELHG 124
            +N +   +  +  P ++ +LY+ M +       +++  P +LK+CA++     G+++HG
Sbjct: 101 IWNTMFRGHALSSDPVSALKLYVCMISL--GLLPNSYTFPFVLKSCAKSKAFKEGQQIHG 160

Query: 125 FAVKNGFATDVFVCNALMNMYEKCGSLVSARLVFDKMPERDVVSWSTMLGCYVRSKSFGE 184
             +K G   D++V  +L++MY + G L  A  VFDK P RDVVS+               
Sbjct: 161 HVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSY--------------- 220

Query: 185 ALRLVGEMHFVGVKLSGVALISVIGVFGELLDMKSGRAVHGYIVRNVGDVKMEVPLTTAL 244
                                                                    TAL
Sbjct: 221 ---------------------------------------------------------TAL 280

Query: 245 INMYCKGECLESAQRLFDSLSQRSVVSWTSMIAGCIHNCRLVEGAKNFNRMLEEKIFPNE 304
           I  Y     +E+AQ+LFD +  + VVSW +MI+G        E  + F  M++  + P+E
Sbjct: 281 IKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDE 340

Query: 305 ITLLSLITACGFVRTLDLGKCLHAYLLRNGFGMSLALATALIDMYGKCGQVGYARALFNG 364
            T++++++AC    +++LG+ +H ++  +GFG +L +  ALID+Y KCG++  A  LF  
Sbjct: 341 STMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFER 400

Query: 365 VEEKDVKIWSAMISTYAYVSCIDQAFGLFLEMLDNEVKPNKVTMVSLLSSCAEVGALDLG 424
           +  KDV  W+ +I  Y +++   +A  LF EML +   PN VTM+S+L +CA +GA+D+G
Sbjct: 401 LPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIG 460

Query: 425 KWTHAYI--RRHDLEVDVILETALINMYAKCGDLTIARSLFDEATRRDIHMWNAMMAGFS 484
           +W H YI  R   +     L T+LI+MYAKCGD+  A  +F+    + +  WNAM+ GF+
Sbjct: 461 RWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFA 520

Query: 485 MHGCGTEALELFSEMESHGVKPNDITFISIFHACSHSGLVADGKKHFNRMVHDFGIVPKI 544
           MHG    + +LFS M   G++P+DITF+ +  ACSHSG++  G+  F  M  D+ + PK+
Sbjct: 521 MHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMTQDYKMTPKL 580

Query: 545 EHYGCLVDLLGRAGRLDEAHDIIENMPMRPNTITWGALLAACKLHKNLALGEVAARKILE 604
           EHYGC++DLLG +G   EA ++I  M M P+ + W +LL ACK+H N+ LGE  A  +++
Sbjct: 581 EHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGVIWCSLLKACKMHGNVELGESFAENLIK 640

Query: 605 LDPQNCGYSVLKSNIYASAKRWNDVTSVRETMNHLGMKKEPGLSWIEVNGSIHHFKSGDK 664
           ++P+N G  VL SNIYASA RWN+V   R  +N  GMKK PG S IE++  +H F  GDK
Sbjct: 641 IEPENPGSYVLLSNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDK 700

Query: 665 TCTQTTEVYEMVTEMCIKLREAGYTPNTSAVLLNVEEEEKEFALSYHSEKLAMAFGLISM 724
              +  E+Y M+ EM + L +AG+ P+TS VL  +EEE KE AL +HSEKLA+AFGLIS 
Sbjct: 701 FHPRNREIYGMLEEMEVLLEKAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLIST 741

Query: 725 APGTPIRIVKNLRICDDCHAATKLLSKIYGRTIIVRDRNRFHHFSEGYCSCLGYW 755
            PGT + IVKNLR+C +CH ATKL+SKIY R II RDR RFHHF +G CSC  YW
Sbjct: 761 KPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCNDYW 741

[Close]
BLAST of Lsi06G007940 vs. TAIR 10
Match: AT2G29760.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 535.4 bits (1378), Expect = 7.3e-152
Identity = 292/771 (37.87%), Postives = 442/771 (57.33%), Query Frame = 0 

Query: 8   LNLQHTQQIHAHFIKT-QFHKPH---PFFSQSHFT---------------PEAN---YNL 67
           ++L+  +Q H H I+T  F  P+     F+ +  +               P+ N   +N 
Sbjct: 41  VSLRQLKQTHGHMIRTGTFSDPYSASKLFAMAALSSFASLEYARKVFDEIPKPNSFAWNT 100

Query: 68  LISSYTNNQLPQASFRLYLHMRTTDPAAALDNFILPSLLKACAQASCGVWGRELHGFAVK 127
           LI +Y +   P  S   +L M  ++     + +  P L+KA A+ S    G+ LHG AVK
Sbjct: 101 LIRAYASGPDPVLSIWAFLDM-VSESQCYPNKYTFPFLIKAAAEVSSLSLGQSLHGMAVK 160

Query: 128 NGFATDVFVCNALMNMYEKCGSLVSARLVFDKMPERDVVSWSTMLGCYVRSKSFGEALRL 187
           +   +DVFV N+L++ Y  CG L SA  VF  + E+DVVSW++M+  +V+  S  +AL L
Sbjct: 161 SAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALEL 220

Query: 188 VGEMHFVGVKLSGVALISVIGVFGELLDMKSGRAVHGYIVRNVGDVKMEVPLTTALINMY 247
             +M    VK S V ++ V+    ++ +++ GR V  YI  N   V + + L  A+++MY
Sbjct: 221 FKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEEN--RVNVNLTLANAMLDMY 280

Query: 248 CKGECLESAQRLFDSLSQRSVVSWTSMIAGCIHNCRLVEGAKNFNRMLEEKIFPNEITLL 307
            K   +E A+RLFD++ ++  V+WT+M+ G                              
Sbjct: 281 TKCGSIEDAKRLFDAMEEKDNVTWTTMLDG------------------------------ 340

Query: 308 SLITACGFVRTLDLGKCLHAYLLRNGFGMSLALATALIDMYGKCGQVGYARALFNGVEEK 367
                                                   Y        AR + N + +K
Sbjct: 341 ----------------------------------------YAISEDYEAAREVLNSMPQK 400

Query: 368 DVKIWSAMISTYAYVSCIDQAFGLFLEM-LDNEVKPNKVTMVSLLSSCAEVGALDLGKWT 427
           D+  W+A+IS Y      ++A  +F E+ L   +K N++T+VS LS+CA+VGAL+LG+W 
Sbjct: 401 DIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGRWI 460

Query: 428 HAYIRRHDLEVDVILETALINMYAKCGDLTIARSLFDEATRRDIHMWNAMMAGFSMHGCG 487
           H+YI++H + ++  + +ALI+MY+KCGDL  +R +F+   +RD+ +W+AM+ G +MHGCG
Sbjct: 461 HSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAMHGCG 520

Query: 488 TEALELFSEMESHGVKPNDITFISIFHACSHSGLVADGKKHFNRMVHDFGIVPKIEHYGC 547
            EA+++F +M+   VKPN +TF ++F ACSH+GLV + +  F++M  ++GIVP+ +HY C
Sbjct: 521 NEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFHQMESNYGIVPEEKHYAC 580

Query: 548 LVDLLGRAGRLDEAHDIIENMPMRPNTITWGALLAACKLHKNLALGEVAARKILELDPQN 607
           +VD+LGR+G L++A   IE MP+ P+T  WGALL ACK+H NL L E+A  ++LEL+P+N
Sbjct: 581 IVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLNLAEMACTRLLELEPRN 640

Query: 608 CGYSVLKSNIYASAKRWNDVTSVRETMNHLGMKKEPGLSWIEVNGSIHHFKSGDKTCTQT 667
            G  VL SNIYA   +W +V+ +R+ M   G+KKEPG S IE++G IH F SGD     +
Sbjct: 641 DGAHVLLSNIYAKLGKWENVSELRKHMRVTGLKKEPGCSSIEIDGMIHEFLSGDNAHPMS 700

Query: 668 TEVYEMVTEMCIKLREAGYTPNTSAVLLNVEEEE-KEFALSYHSEKLAMAFGLISMAPGT 727
            +VY  + E+  KL+  GY P  S VL  +EEEE KE +L+ HSEKLA+ +GLIS     
Sbjct: 701 EKVYGKLHEVMEKLKSNGYEPEISQVLQIIEEEEMKEQSLNLHSEKLAICYGLISTEAPK 738

Query: 728 PIRIVKNLRICDDCHAATKLLSKIYGRTIIVRDRNRFHHFSEGYCSCLGYW 755
            IR++KNLR+C DCH+  KL+S++Y R IIVRDR RFHHF  G CSC  +W
Sbjct: 761 VIRVIKNLRVCGDCHSVAKLISQLYDREIIVRDRYRFHHFRNGQCSCNDFW 738

The following BLAST results are available for this feature:
BLAST of Lsi06G007940 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q3E6Q11.9e-15739.75Pentatricopeptide repeat-containing protein At1g11290, chloroplastic OS=Arabidop... [more]
Q9LUJ25.8e-15439.33Pentatricopeptide repeat-containing protein At3g22690 OS=Arabidopsis thaliana OX... [more]
Q9LN013.2e-15237.94Pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Arabidop... [more]
O823801.0e-15037.87Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidop... [more]
Q9SN393.0e-15038.15Pentatricopeptide repeat-containing protein DOT4, chloroplastic OS=Arabidopsis t... [more]
BLAST of Lsi06G007940 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7V2V90.0e+0089.49Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946... [more]
A0A1S3CJ580.0e+0089.36pentatricopeptide repeat-containing protein At3g26782, mitochondrial-like OS=Cuc... [more]
A0A0A0LYC20.0e+0087.90DYW_deaminase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G6902... [more]
A0A6J1HA740.0e+0086.19pentatricopeptide repeat-containing protein At3g26782, mitochondrial-like OS=Cuc... [more]
A0A6J1JKG90.0e+0084.20pentatricopeptide repeat-containing protein At4g21065-like OS=Cucurbita maxima O... [more]
BLAST of Lsi06G007940 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038879151.10.0e+0090.17pentatricopeptide repeat-containing protein At3g26782, mitochondrial-like [Benin... [more]
KAA0062552.10.0e+0089.49pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYK28774... [more]
XP_008462708.10.0e+0089.36PREDICTED: pentatricopeptide repeat-containing protein At3g26782, mitochondrial-... [more]
XP_011660280.10.0e+0087.90pentatricopeptide repeat-containing protein At3g26782, mitochondrial [Cucumis sa... [more]
XP_023533718.10.0e+0086.30pentatricopeptide repeat-containing protein At4g21065-like [Cucurbita pepo subsp... [more]
BLAST of Lsi06G007940 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G11290.11.4e-15839.75Pentatricopeptide repeat (PPR) superfamily protein [more]
AT3G22690.24.1e-15539.33INVOLVED IN: photosystem II assembly, regulation of chlorophyll biosynthetic pro... [more]
AT3G22690.14.6e-15439.41CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1685 (InterPro:IPR012... [more]
AT1G08070.12.3e-15337.94Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT2G29760.17.3e-15237.87Tetratricopeptide repeat (TPR)-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 219..244
e-value: 0.062
score: 13.6
coord: 521..546
e-value: 0.041
score: 14.1
coord: 114..142
e-value: 0.0064
score: 16.7
coord: 144..170
e-value: 6.7E-4
score: 19.7
coord: 247..276
e-value: 0.11
score: 12.8
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 447..494
e-value: 6.4E-12
score: 45.5
coord: 345..393
e-value: 4.3E-7
score: 30.0
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 349..381
e-value: 6.7E-4
score: 17.7
coord: 144..176
e-value: 1.1E-5
score: 23.3
coord: 450..482
e-value: 4.5E-8
score: 30.8
coord: 247..281
e-value: 2.2E-4
score: 19.2
coord: 114..144
e-value: 0.0017
score: 16.4
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 346..380
score: 9.689847
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 111..141
score: 8.70333
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 245..279
score: 9.032168
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 447..481
score: 12.254791
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 142..176
score: 10.259834
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 297..420
e-value: 5.6E-20
score: 73.9
coord: 421..662
e-value: 1.5E-42
score: 148.1
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 195..296
e-value: 6.3E-16
score: 60.2
coord: 96..194
e-value: 4.4E-18
score: 67.3
IPR032867DYW domainPFAMPF14432DYW_deaminasecoord: 620..743
e-value: 2.0E-38
score: 131.1
NoneNo IPR availablePANTHERPTHR47924PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEINcoord: 23..389
NoneNo IPR availablePANTHERPTHR47924:SF46PENTATRICOPEPTIDE REPEAT PROTEIN-RELATEDcoord: 23..389
NoneNo IPR availablePANTHERPTHR47924:SF46PENTATRICOPEPTIDE REPEAT PROTEIN-RELATEDcoord: 230..667
NoneNo IPR availablePANTHERPTHR47924PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEINcoord: 230..667

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi06G007940.1Lsi06G007940.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding