Lsi06G006730 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi06G006730
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionAcetohydroxy-acid synthase small subunit
Locationchr06: 10432135 .. 10432362 (-)
RNA-Seq ExpressionLsi06G006730
SyntenyLsi06G006730
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGCCGCCGTAGCGCTTTGCCCAGCTCCCGTAAAAGCTCACAAACCTGGCTATTCTGCACTTGCCTCTAGAAATGTCTTCTCTACAAGTTTGATCGCTGAGTACCAGAAAGTGCAGAAATGGAACCGTTTCGAGCTCCGGAGGCTGCAGGTCTCTTCTGCTGCTGTTAATGATAATGCAGTGACTGTAACCGACTCTTCTCGTCCCCCCATTCGTTCTACGTAA

mRNA sequence

ATGGCGGCCGCCGTAGCGCTTTGCCCAGCTCCCGTAAAAGCTCACAAACCTGGCTATTCTGCACTTGCCTCTAGAAATGTCTTCTCTACAAGTTTGATCGCTGAGTACCAGAAAGTGCAGAAATGGAACCGTTTCGAGCTCCGGAGGCTGCAGGTCTCTTCTGCTGCTGTTAATGATAATGCAGTGACTGTAACCGACTCTTCTCGTCCCCCCATTCGTTCTACGTAA

Coding sequence (CDS)

ATGGCGGCCGCCGTAGCGCTTTGCCCAGCTCCCGTAAAAGCTCACAAACCTGGCTATTCTGCACTTGCCTCTAGAAATGTCTTCTCTACAAGTTTGATCGCTGAGTACCAGAAAGTGCAGAAATGGAACCGTTTCGAGCTCCGGAGGCTGCAGGTCTCTTCTGCTGCTGTTAATGATAATGCAGTGACTGTAACCGACTCTTCTCGTCCCCCCATTCGTTCTACGTAA

Protein sequence

MAAAVALCPAPVKAHKPGYSALASRNVFSTSLIAEYQKVQKWNRFELRRLQVSSAAVNDNAVTVTDSSRPPIRST
Homology
[Close]
BLAST of Lsi06G006730 vs. ExPASy TrEMBL
Match: A0A5A7T3Z5 (Acetohydroxy-acid synthase small subunit OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold84664G00010 PE=3 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 1.1e-26
Identity = 67/75 (89.33%), Postives = 70/75 (93.33%), Query Frame = 0 

Query: 1  MAAAVALCPAPVKAHKPGYSALASRNVFSTSLIAEYQKVQKWNRFELRRLQVSSAAVNDN 60
          MAAAVALCPAPVKAHKP YSALASR+ FSTSLI +YQKVQKWNRFE +RLQVSSAAVNDN
Sbjct: 1  MAAAVALCPAPVKAHKPPYSALASRHFFSTSLIVKYQKVQKWNRFEFQRLQVSSAAVNDN 60

Query: 61 AVTVTDSSRPPIRST 76
          AVTVTDSSRP IRST
Sbjct: 61 AVTVTDSSRPSIRST 75

[Close]
BLAST of Lsi06G006730 vs. ExPASy TrEMBL
Match: A0A1S3B8L7 (Acetohydroxy-acid synthase small subunit OS=Cucumis melo OX=3656 GN=LOC103487207 PE=3 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 1.1e-26
Identity = 67/75 (89.33%), Postives = 70/75 (93.33%), Query Frame = 0 

Query: 1  MAAAVALCPAPVKAHKPGYSALASRNVFSTSLIAEYQKVQKWNRFELRRLQVSSAAVNDN 60
          MAAAVALCPAPVKAHKP YSALASR+ FSTSLI +YQKVQKWNRFE +RLQVSSAAVNDN
Sbjct: 1  MAAAVALCPAPVKAHKPPYSALASRHFFSTSLIVKYQKVQKWNRFEFQRLQVSSAAVNDN 60

Query: 61 AVTVTDSSRPPIRST 76
          AVTVTDSSRP IRST
Sbjct: 61 AVTVTDSSRPSIRST 75

[Close]
BLAST of Lsi06G006730 vs. ExPASy TrEMBL
Match: A0A0A0M346 (Acetohydroxy-acid synthase small subunit OS=Cucumis sativus OX=3659 GN=Csa_1G652240 PE=3 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 3.1e-26
Identity = 66/75 (88.00%), Postives = 70/75 (93.33%), Query Frame = 0 

Query: 1  MAAAVALCPAPVKAHKPGYSALASRNVFSTSLIAEYQKVQKWNRFELRRLQVSSAAVNDN 60
          MAAAVALCPAPVKAHKP YSALASR+ FSTSLI +YQ+VQKWNRFE +RLQVSSAAVNDN
Sbjct: 1  MAAAVALCPAPVKAHKPPYSALASRHFFSTSLIVKYQEVQKWNRFEFQRLQVSSAAVNDN 60

Query: 61 AVTVTDSSRPPIRST 76
          AVTVTDSSRP IRST
Sbjct: 61 AVTVTDSSRPSIRST 75

[Close]
BLAST of Lsi06G006730 vs. ExPASy TrEMBL
Match: A0A6J1HBD4 (Acetohydroxy-acid synthase small subunit OS=Cucurbita moschata OX=3662 GN=LOC111461304 PE=3 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 1.5e-17
Identity = 54/75 (72.00%), Postives = 61/75 (81.33%), Query Frame = 0 

Query: 1  MAAAVALCPAPVKAHKPGYSALASRNVFSTSLIAEYQKVQKWNRFELRRLQVSSAAVNDN 60
          MAAAV L PA V A KP Y A+ASRNVFS +LI EY+KVQKWNRFEL+R QVSSAA N +
Sbjct: 1  MAAAVPLFPASVNAFKPRYPAVASRNVFSETLIGEYRKVQKWNRFELQRSQVSSAAANGD 60

Query: 61 AVTVTDSSRPPIRST 76
          AVTV+DSSR  IRS+
Sbjct: 61 AVTVSDSSRSAIRSS 75

[Close]
BLAST of Lsi06G006730 vs. ExPASy TrEMBL
Match: A0A6J1JLL8 (Acetohydroxy-acid synthase small subunit OS=Cucurbita maxima OX=3661 GN=LOC111485703 PE=3 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 2.0e-17
Identity = 53/75 (70.67%), Postives = 59/75 (78.67%), Query Frame = 0 

Query: 1  MAAAVALCPAPVKAHKPGYSALASRNVFSTSLIAEYQKVQKWNRFELRRLQVSSAAVNDN 60
          MAAAV LCPA V A KP Y A+ SRN  S SLI EY+KVQKWNRFEL+R QVSSAA N +
Sbjct: 1  MAAAVPLCPASVNAFKPRYPAVGSRNAVSESLIGEYRKVQKWNRFELQRSQVSSAAANGD 60

Query: 61 AVTVTDSSRPPIRST 76
          AVTV+DSSR  IRS+
Sbjct: 61 AVTVSDSSRSAIRSS 75

[Close]
BLAST of Lsi06G006730 vs. NCBI nr
Match: XP_038880022.1 (acetolactate synthase small subunit 2, chloroplastic-like isoform X1 [Benincasa hispida])

HSP 1 Score: 136.0 bits (341), Expect = 1.4e-28
Identity = 69/75 (92.00%), Postives = 71/75 (94.67%), Query Frame = 0 

Query: 1  MAAAVALCPAPVKAHKPGYSALASRNVFSTSLIAEYQKVQKWNRFELRRLQVSSAAVNDN 60
          MAAAVALCP PVKAHKPGYSA+ SRN FSTSLI EYQKVQKWNRFELRRLQVSSAAVNDN
Sbjct: 1  MAAAVALCPVPVKAHKPGYSAVGSRNAFSTSLIGEYQKVQKWNRFELRRLQVSSAAVNDN 60

Query: 61 AVTVTDSSRPPIRST 76
          AVTV+DSSRPPIRST
Sbjct: 61 AVTVSDSSRPPIRST 75

[Close]
BLAST of Lsi06G006730 vs. NCBI nr
Match: XP_038880023.1 (acetolactate synthase small subunit 2, chloroplastic-like isoform X2 [Benincasa hispida])

HSP 1 Score: 136.0 bits (341), Expect = 1.4e-28
Identity = 69/75 (92.00%), Postives = 71/75 (94.67%), Query Frame = 0 

Query: 1  MAAAVALCPAPVKAHKPGYSALASRNVFSTSLIAEYQKVQKWNRFELRRLQVSSAAVNDN 60
          MAAAVALCP PVKAHKPGYSA+ SRN FSTSLI EYQKVQKWNRFELRRLQVSSAAVNDN
Sbjct: 1  MAAAVALCPVPVKAHKPGYSAVGSRNAFSTSLIGEYQKVQKWNRFELRRLQVSSAAVNDN 60

Query: 61 AVTVTDSSRPPIRST 76
          AVTV+DSSRPPIRST
Sbjct: 61 AVTVSDSSRPPIRST 75

[Close]
BLAST of Lsi06G006730 vs. NCBI nr
Match: KAA0038202.1 (acetolactate synthase small subunit 1 [Cucumis melo var. makuwa] >TYK30596.1 acetolactate synthase small subunit 1 [Cucumis melo var. makuwa])

HSP 1 Score: 128.6 bits (322), Expect = 2.2e-26
Identity = 67/75 (89.33%), Postives = 70/75 (93.33%), Query Frame = 0 

Query: 1  MAAAVALCPAPVKAHKPGYSALASRNVFSTSLIAEYQKVQKWNRFELRRLQVSSAAVNDN 60
          MAAAVALCPAPVKAHKP YSALASR+ FSTSLI +YQKVQKWNRFE +RLQVSSAAVNDN
Sbjct: 1  MAAAVALCPAPVKAHKPPYSALASRHFFSTSLIVKYQKVQKWNRFEFQRLQVSSAAVNDN 60

Query: 61 AVTVTDSSRPPIRST 76
          AVTVTDSSRP IRST
Sbjct: 61 AVTVTDSSRPSIRST 75

[Close]
BLAST of Lsi06G006730 vs. NCBI nr
Match: XP_008443657.1 (PREDICTED: acetolactate synthase small subunit 1, chloroplastic-like [Cucumis melo])

HSP 1 Score: 128.6 bits (322), Expect = 2.2e-26
Identity = 67/75 (89.33%), Postives = 70/75 (93.33%), Query Frame = 0 

Query: 1  MAAAVALCPAPVKAHKPGYSALASRNVFSTSLIAEYQKVQKWNRFELRRLQVSSAAVNDN 60
          MAAAVALCPAPVKAHKP YSALASR+ FSTSLI +YQKVQKWNRFE +RLQVSSAAVNDN
Sbjct: 1  MAAAVALCPAPVKAHKPPYSALASRHFFSTSLIVKYQKVQKWNRFEFQRLQVSSAAVNDN 60

Query: 61 AVTVTDSSRPPIRST 76
          AVTVTDSSRP IRST
Sbjct: 61 AVTVTDSSRPSIRST 75

[Close]
BLAST of Lsi06G006730 vs. NCBI nr
Match: XP_004139096.1 (acetolactate synthase small subunit 1, chloroplastic [Cucumis sativus] >KAE8653563.1 hypothetical protein Csa_007131 [Cucumis sativus])

HSP 1 Score: 127.1 bits (318), Expect = 6.4e-26
Identity = 66/75 (88.00%), Postives = 70/75 (93.33%), Query Frame = 0 

Query: 1  MAAAVALCPAPVKAHKPGYSALASRNVFSTSLIAEYQKVQKWNRFELRRLQVSSAAVNDN 60
          MAAAVALCPAPVKAHKP YSALASR+ FSTSLI +YQ+VQKWNRFE +RLQVSSAAVNDN
Sbjct: 1  MAAAVALCPAPVKAHKPPYSALASRHFFSTSLIVKYQEVQKWNRFEFQRLQVSSAAVNDN 60

Query: 61 AVTVTDSSRPPIRST 76
          AVTVTDSSRP IRST
Sbjct: 61 AVTVTDSSRPSIRST 75

The following BLAST results are available for this feature:
BLAST of Lsi06G006730 vs.
Match NameE-valueIdentityDescription
BLAST of Lsi06G006730 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7T3Z51.1e-2689.33Acetohydroxy-acid synthase small subunit OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A1S3B8L71.1e-2689.33Acetohydroxy-acid synthase small subunit OS=Cucumis melo OX=3656 GN=LOC103487207... [more]
A0A0A0M3463.1e-2688.00Acetohydroxy-acid synthase small subunit OS=Cucumis sativus OX=3659 GN=Csa_1G652... [more]
A0A6J1HBD41.5e-1772.00Acetohydroxy-acid synthase small subunit OS=Cucurbita moschata OX=3662 GN=LOC111... [more]
A0A6J1JLL82.0e-1770.67Acetohydroxy-acid synthase small subunit OS=Cucurbita maxima OX=3661 GN=LOC11148... [more]
BLAST of Lsi06G006730 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038880022.11.4e-2892.00acetolactate synthase small subunit 2, chloroplastic-like isoform X1 [Benincasa ... [more]
XP_038880023.11.4e-2892.00acetolactate synthase small subunit 2, chloroplastic-like isoform X2 [Benincasa ... [more]
KAA0038202.12.2e-2689.33acetolactate synthase small subunit 1 [Cucumis melo var. makuwa] >TYK30596.1 ace... [more]
XP_008443657.12.2e-2689.33PREDICTED: acetolactate synthase small subunit 1, chloroplastic-like [Cucumis me... [more]
XP_004139096.16.4e-2688.00acetolactate synthase small subunit 1, chloroplastic [Cucumis sativus] >KAE86535... [more]
BLAST of Lsi06G006730 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi06G006730.1Lsi06G006730.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009097 isoleucine biosynthetic process
biological_process GO:0050790 regulation of catalytic activity
biological_process GO:0009099 valine biosynthetic process
cellular_component GO:0005737 cytoplasm
molecular_function GO:1990610 acetolactate synthase regulator activity