Lsi06G006660 (gene) Bottle gourd (USVL1VR-Ls) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TAGAATTATAAACCTCCTAGCTTTCTTACGTACATCAAAAACCCAACCCAAAAATCTTAAATTTTGAAACCATGCCAAGAGATCGTGACCCTCTAGTCGTTGGGAGAGTCATCGGTGACGTCATCGACTCGTTCTTGAGGTCCATTTCGATTAGGGTTACTTACTCCACTAAGGAAGTTAACAATGGTTGCGAGCTTAAACCCTCTCAAGTCGTAAACCAGCCAAGAGTTGAGATTGGTGGCACTGACCTTCGCACATTCTTCACTTTGGTAAATTGATTTTTAAAAGATATTTAGGTGCATCTTCATATACTACGCTTATTTTTATATATTTCACCAATTTTTTTAATCTTATTTTATTCCTCAAAGATAGGTGCACTTATACACAAGCATCCCCTTTTCTATACATAGTAGAAAAAAAAGTAAGAATACTTCACTTTTTTAAAAAAAATAATTGTCACATGACAGTATTTTTTAGTATTGTTTAGGTCGCACAATATATGGATGCAACCTAAACTAAACCCAAACTTTTTATTCTTAATCTTTTACTTTCTTTTGTTTCCACATTCCATGCTTTTTTTTTAAAAAAAAATTATTATTTTAGTAATCTTTTTTATTTGTCATTTTCTCATTCATTTCCAGTTTGTTTGCTTTTTCTTTGTTATAGGTTATGGTGGATCCTGATGCTCCTAGCCCTAGTGATCCTAATCTTAGGGAATACTTGCATTGGTACGTCTTTTTTTTTTTTTTTTACTTTTTCAGCCCAAGTTAATAAGTTTTCATTTATTGTTTCTTTTGTTTTTCATTCAACTTGTTTCATTTTTATCTAGGCCAACCTAATGTGAAAATAGGGTATTAAATTTCTATTGTCATATTAACATTTTTATCCTCATTTTCATTTGCCCAAAATTTGAGTATCCAATATTCTAAAAATCGATAAAGTAAAAAAATGTAGCAATAAAATATTATTAATATGGACGTCATATTAAGGATAAAATATTTTTCTATTTTTTGATTTCAAAGTTAATAGTATAAGTATTTTGCCAGTTAAGATATGCTCACTTTTAGTAAAAAAATATTTTTATGTTAACTTTATATTTCTTCTTGTTAATTCTATTATTTTTGTTATTTTTTTCAGAAATATCAAGTAAATTTATATAAAAGCTCTTAATTTCGAAATTGTGGTAAAAAAACAACTTTACGTGTCTTGGAATAAAATTTGAAGTAAAAGAAAATTTTGATACATATTTTATAAAAGGAAAATTCTTTTTTTTCTTCTTCTTTTTGTTAGTATATGTTCTCTCATATAATCAATCTATCTTTTCAAAATAAATGAGGAGTACTTTTTTCCACTTTTTTCCAAAAATTACTAAGTTATGGATGGTAAATTAAATATATACAATATAAATAATCACTATCTTTTCGTCTAAAATATTATGATCTTCTTTTATAATTATCGTCTTCATATGAAAACAACCCCAAGTTTTTTTTTTTTTTTTCTTATATCAAAAAAATGCATTTACTAAAGCATTGTTTTACTTTTGAAGACTTTTTTGAAAAGGAAAGTTGAGGTTTCTCTGTGTAGGTATATTCTCTTCTTCTTTGGTACCCTTTCTTTTTCTTTTTCTTTTTCTTTTTTTCTCTTCTTTCTTTTCTTATTTCTAGTAAAAGGCTAACCTAACTTTTCAAAGAAAATAAATAAATAAATAATAACAATAATAATAATAATAATAAATAATTGTCTCTATATTGTCATAATTCGTATCAAGTGATATGCATATGTGTGTATGTATAGATATACATTTTCACTCATAAGNACGTGTCTTGGAATAAAATTTGAAGTAAAAGAAAATTTTGATACATATTTTATAAAAGGAAAATTCTTTTTTTTCTTCTTCTTTTTGTTAGTATATGTTCTCTCATATAATCAATCTATCTTTTCAAAATAAATGAGGAGTACTTTTTTCCACTTTTTTCCAAAAATTACTAAGTTATGGATGGTAAATTAAATATATACAATATAAATAATCACTATCTTTTCGTCTAAAATATTATGATCTTCTTTTATAATTATCGTCTTCATATGAAAACAACCCCAAGTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTAACCTTAAAACTCAAACAAAATTGGTTAACTTCTCAAATCTAACTTGACTAATCCTTAACGAAAGTTTGAATCTCCGATATTAATATTCTATTTGAAGTGGAAAAAATGACCGATGATAGAGTGTGTAGGATGATATAAGGAATATTTTTTAAAAAATTAACAAAATGTAGAAAAGAAGAGAGACTTTTCACTGTTTGGAAATACAAGGAATAAAGCTGAGACTTGTCTACTTGATGGATCAACTTCAATCCATGAATAAAAGAATTTTTTTTTTATTATTATTATTATTTTTTATAGTCCTTGTTTAAAAAATTAAAATAAAATAAAATAAAATAAAATTATTTTGATGGGGATTGAAGCGGAGGACAATTGGGAATCGGCGATTATCAGCTTTTGAGTAAACAATTTAATCTAGAGATTCCTTGTACAAGTCCTACACGCTGTTTTCCATTTTTTTCTTGTGGCTCAAAAAACATGCCCACGGGGACTTGCTTTTTATTCCCAATAAAGTTTGAATGTCTTCACACGAACTCTTCACAAGAATTATTAGTTTTAAGTTTTTTTTTTTATTAATCGGTAATTTAATATGGTATTAGACTAGGTTGTCTAGGAAGATCTTGTGTTCAAGTCCATGCAATGTTATTTTCTTCCCAATTAATATTCATTTCCATTTCTTAGATTTTTTTTCATATTTCACGCCCACAAGTGAGGGGAGAGTATTAGATGATATGATATTAAATTTGTCTTCACCCATCAATTTAAGTTTTTGAATCAATCGGTGATTTAATAGTAAAAAACACACCACGATGAGTATATAAATAAGAACAACTATCTCCTATTCTCTTATATGATTTGAGACCTTAAAACCATGAAGGCTTATGTCCATAGTGGACAATATCATATATCGTTGTTGTGTTAATATATGTGGAGCGTCGTTGTCTTAACAAGTGGTATTAGAGTCATGCCCTTGATTTAGTTATATTGGTAGAATCCTCGAGTGTCGAATAAAAGAGTGGTGAGTTTTAAAAGATGCAATTATAGTGTGATTCGTCGTTGATTTCTATCGGAAAAGCAATGTGCTCCAATGACGAAGAGTTTGCCTAACTAATAGTTAGAAAGATAGATAAAAAAATTTTAGGGGAGACTCAATCGTTAGATGAAAATAAGATTATGGTATATAACGGAGGATAACTATCTTCAATGGTATGAGACCTTTTGGGTTAAAACAAAAACAAAATCATGTGGTTTTATAACTAAAGTGAACATATGACATATGGAGTGTCGTTCTCCCTTAATTTCATGTTAGTTTCGATTAAATATTTAATTATTGCTTGGTTCAATTTAGTTCTTACTATCTTAAATGTTTTAATTTAGTCTTTACGATGTTGTCACATTCCAGAAAATATTCTCAAGGTTACGAACATGACATGTTTTCGATTTACATGGTAGTAGTAAGTTGGTGTTTTCTATTCAGCTGACTATATAAGAAATTTAATCAACTGTGTAAAAAAAAAAATAGAGAAAATGCATGAATGACATTTTCTAATGAAGGTGTGCAATAAAAAAATTATTATTATTTCTTTTTATGTTTGAGGTAGGAAATCAAATCTATACATTCGAAGTCAACATTATAAGCTTTATGTTCGCTAAACTATGTTCATATAATTGACTTAATTTAATTTACGACTTAAACACCTTTAAACACCTTTTAATTGCTCCTATAATTCTCTTTTATATATATATATATATATATATATATATATATATATATATATATATATATATTTGTTATAATTAAGAATTTCATATTACAAAAAAAATATAAAAATATTTTGGTTCATTTTGCAGGTTGGTGACTGATATTCCAGCTACAACTGGGGCAACCTTTGGTAATGTGTTTTCCTTTTAAAAGAAAAATACCGTTTTTCGTTAATTTTAGAGGATTGAGGGTTGTATGGTTTCTTGTAAGTTCAACAAAACGTAGAAGTAGAGAGTCCAACCTCAGATTTTATTTTATTTTTTATTTTTTTATTTTATTTTTTTAATAAAATGCTCGGCCTGATAGATTTAAGGGATTAGCGATTACATTCAAAATATATTAAAAATTTGAAGATGGAGTAAATAAGGGAGGATTTGGTAATGTTTGTTGAGATTTTATAAATGTTTGGGTATTTGATATTTGAAAATATGAATAAAATTAATTGGATTGTTTTTATAGAAAAGTGAGCTAAAATATTTACAAATATTAAAAATTTTATTATCAATAGATGGTGATAGACTTTTATCATGGGGGATAGACAATAAATTTTTTTTATATTTATAAATAGTTTGATATTTTTTTCTTTTCTACGTAGTTTCTTTATCAGTTTTACCAAAAACAAACAAAAAAAAAAATGGAACATTCTTTCGTATAAATTTGTTGGGTTTGGATTAATTTATGTGATTGTTTATTCATAGTTGTTATTTGAATGTGTAGGGCAAGAGATAGTGTGTTATGAGAGTCCAAGACCAACGGTGGGGATCCATCGTTTTGTGCTGGTTTTGTTTCGACAGCTTGGAAGGCAAACAGTATACGCTCCTGGTTGGCGCCAAAACTTCAATACAAGAGACTTTGCAGAGCTTTACAATCTTGGTTCGCCAGTTGCAGCTGTTTATTTCAATTGCCAAAGGGAAAGTGGTTCTGGTGGAAGGAGAAGAGTCCAAGATGATTATTGACTTAAATTATATTAAACCCACTTCACTTTATTTTCACACATCATTATTAAATATATATATATATAGTAATATATATATAGTTATATATAGTATGTGTTTATGTTTTGATTCCTATGCTTCTAGAGAAATAGTTTATGATCAATGTGGAGGGGTAAATAAGGGCAAATGCATTGTTGTTAATTGCCCTTGTACTATATATATATATTGTAATAAGGTCATTTGATATATTAATAATGAATAGTTTTTGTTCTTTTGGGGTTAAATTACC TAGAATTATAAACCTCCTAGCTTTCTTACGTACATCAAAAACCCAACCCAAAAATCTTAAATTTTGAAACCATGCCAAGAGATCGTGACCCTCTAGTCGTTGGGAGAGTCATCGGTGACGTCATCGACTCGTTCTTGAGGTCCATTTCGATTAGGGTTACTTACTCCACTAAGGAAGTTAACAATGGTTGCGAGCTTAAACCCTCTCAAGTCGTAAACCAGCCAAGAGTTGAGATTGGTGGCACTGACCTTCGCACATTCTTCACTTTGGTTATGGTGGATCCTGATGCTCCTAGCCCTAGTGATCCTAATCTTAGGGAATACTTGCATTGGTTGGTGACTGATATTCCAGCTACAACTGGGGCAACCTTTGGGCAAGAGATAGTGTGTTATGAGAGTCCAAGACCAACGGTGGGGATCCATCGTTTTGTGCTGGTTTTGTTTCGACAGCTTGGAAGGCAAACAGTATACGCTCCTGGTTGGCGCCAAAACTTCAATACAAGAGACTTTGCAGAGCTTTACAATCTTGGTTCGCCAGTTGCAGCTGTTTATTTCAATTGCCAAAGGGAAAGTGGTTCTGGTGGAAGGAGAAGAGTCCAAGATGATTATTGACTTAAATTATATTAAACCCACTTCACTTTATTTTCACACATCATTATTAAATATATATATATATAGTAATATATATATAGTTATATATAGTATGTGTTTATGTTTTGATTCCTATGCTTCTAGAGAAATAGTTTATGATCAATGTGGAGGGGTAAATAAGGGCAAATGCATTGTTGTTAATTGCCCTTGTACTATATATATATATTGTAATAAGGTCATTTGATATATTAATAATGAATAGTTTTTGTTCTTTTGGGGTTAAATTACC ATGCCAAGAGATCGTGACCCTCTAGTCGTTGGGAGAGTCATCGGTGACGTCATCGACTCGTTCTTGAGGTCCATTTCGATTAGGGTTACTTACTCCACTAAGGAAGTTAACAATGGTTGCGAGCTTAAACCCTCTCAAGTCGTAAACCAGCCAAGAGTTGAGATTGGTGGCACTGACCTTCGCACATTCTTCACTTTGGTTATGGTGGATCCTGATGCTCCTAGCCCTAGTGATCCTAATCTTAGGGAATACTTGCATTGGTTGGTGACTGATATTCCAGCTACAACTGGGGCAACCTTTGGGCAAGAGATAGTGTGTTATGAGAGTCCAAGACCAACGGTGGGGATCCATCGTTTTGTGCTGGTTTTGTTTCGACAGCTTGGAAGGCAAACAGTATACGCTCCTGGTTGGCGCCAAAACTTCAATACAAGAGACTTTGCAGAGCTTTACAATCTTGGTTCGCCAGTTGCAGCTGTTTATTTCAATTGCCAAAGGGAAAGTGGTTCTGGTGGAAGGAGAAGAGTCCAAGATGATTATTGA MPRDRDPLVVGRVIGDVIDSFLRSISIRVTYSTKEVNNGCELKPSQVVNQPRVEIGGTDLRTFFTLVMVDPDAPSPSDPNLREYLHWLVTDIPATTGATFGQEIVCYESPRPTVGIHRFVLVLFRQLGRQTVYAPGWRQNFNTRDFAELYNLGSPVAAVYFNCQRESGSGGRRRVQDDY Homology
BLAST of Lsi06G006660 vs. ExPASy Swiss-Prot
Match: Q93WI9 (Protein HEADING DATE 3A OS=Oryza sativa subsp. japonica OX=39947 GN=HD3A PE=1 SV=1) HSP 1 Score: 317.0 bits (811), Expect = 1.4e-85 Identity = 141/171 (82.46%), Postives = 161/171 (94.15%), Query Frame = 0
BLAST of Lsi06G006660 vs. ExPASy Swiss-Prot
Match: Q8VWH2 (Protein RICE FLOWERING LOCUS T 1 OS=Oryza sativa subsp. japonica OX=39947 GN=RFT1 PE=1 SV=1) HSP 1 Score: 296.6 bits (758), Expect = 1.9e-79 Identity = 132/168 (78.57%), Postives = 152/168 (90.48%), Query Frame = 0
BLAST of Lsi06G006660 vs. ExPASy Swiss-Prot
Match: Q9SXZ2 (Protein FLOWERING LOCUS T OS=Arabidopsis thaliana OX=3702 GN=FT PE=1 SV=2) HSP 1 Score: 292.0 bits (746), Expect = 4.7e-78 Identity = 131/169 (77.51%), Postives = 150/169 (88.76%), Query Frame = 0
BLAST of Lsi06G006660 vs. ExPASy Swiss-Prot
Match: Q9S7R5 (Protein TWIN SISTER of FT OS=Arabidopsis thaliana OX=3702 GN=TSF PE=2 SV=1) HSP 1 Score: 282.0 bits (720), Expect = 4.9e-75 Identity = 128/169 (75.74%), Postives = 145/169 (85.80%), Query Frame = 0
BLAST of Lsi06G006660 vs. ExPASy Swiss-Prot
Match: Q9XH43 (CEN-like protein 2 OS=Nicotiana tabacum OX=4097 GN=CET2 PE=2 SV=1) HSP 1 Score: 220.3 bits (560), Expect = 1.7e-56 Identity = 109/171 (63.74%), Postives = 132/171 (77.19%), Query Frame = 0
BLAST of Lsi06G006660 vs. ExPASy TrEMBL
Match: B9ZYL0 (FT-like protein OS=Cucumis sativus OX=3659 GN=CsFT PE=2 SV=1) HSP 1 Score: 369.0 bits (946), Expect = 1.1e-98 Identity = 175/179 (97.77%), Postives = 176/179 (98.32%), Query Frame = 0
BLAST of Lsi06G006660 vs. ExPASy TrEMBL
Match: A0A1S3B9B8 (protein HEADING DATE 3A OS=Cucumis melo OX=3656 GN=LOC103487203 PE=3 SV=1) HSP 1 Score: 369.0 bits (946), Expect = 1.1e-98 Identity = 175/179 (97.77%), Postives = 176/179 (98.32%), Query Frame = 0
BLAST of Lsi06G006660 vs. ExPASy TrEMBL
Match: A0A0A0M0H5 (FT-like protein OS=Cucumis sativus OX=3659 GN=Csa_1G651710 PE=3 SV=1) HSP 1 Score: 366.3 bits (939), Expect = 7.2e-98 Identity = 174/179 (97.21%), Postives = 175/179 (97.77%), Query Frame = 0
BLAST of Lsi06G006660 vs. ExPASy TrEMBL
Match: A0A6J1D9F0 (protein HEADING DATE 3A OS=Momordica charantia OX=3673 GN=LOC111018250 PE=3 SV=1) HSP 1 Score: 366.3 bits (939), Expect = 7.2e-98 Identity = 173/179 (96.65%), Postives = 176/179 (98.32%), Query Frame = 0
BLAST of Lsi06G006660 vs. ExPASy TrEMBL
Match: A6YE10 (FTL2 OS=Cucurbita moschata OX=3662 PE=2 SV=1) HSP 1 Score: 357.1 bits (915), Expect = 4.4e-95 Identity = 167/179 (93.30%), Postives = 173/179 (96.65%), Query Frame = 0
BLAST of Lsi06G006660 vs. NCBI nr
Match: NP_001292686.1 (protein HEADING DATE 3A [Cucumis sativus] >XP_008443654.1 PREDICTED: protein HEADING DATE 3A [Cucumis melo] >BAH28253.1 FT-like protein [Cucumis sativus]) HSP 1 Score: 369.0 bits (946), Expect = 2.3e-98 Identity = 175/179 (97.77%), Postives = 176/179 (98.32%), Query Frame = 0
BLAST of Lsi06G006660 vs. NCBI nr
Match: XP_038877869.1 (LOW QUALITY PROTEIN: protein HEADING DATE 3A-like [Benincasa hispida]) HSP 1 Score: 368.2 bits (944), Expect = 3.9e-98 Identity = 174/179 (97.21%), Postives = 176/179 (98.32%), Query Frame = 0
BLAST of Lsi06G006660 vs. NCBI nr
Match: XP_022149957.1 (protein HEADING DATE 3A [Momordica charantia]) HSP 1 Score: 366.3 bits (939), Expect = 1.5e-97 Identity = 173/179 (96.65%), Postives = 176/179 (98.32%), Query Frame = 0
BLAST of Lsi06G006660 vs. NCBI nr
Match: KGN66637.1 (hypothetical protein Csa_007129 [Cucumis sativus]) HSP 1 Score: 366.3 bits (939), Expect = 1.5e-97 Identity = 174/179 (97.21%), Postives = 175/179 (97.77%), Query Frame = 0
BLAST of Lsi06G006660 vs. NCBI nr
Match: XP_023520641.1 (protein HEADING DATE 3A [Cucurbita pepo subsp. pepo] >KAG6588265.1 Protein HEADING DATE 3A, partial [Cucurbita argyrosperma subsp. sororia] >KAG7022184.1 Protein HEADING DATE 3A, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 357.5 bits (916), Expect = 6.9e-95 Identity = 168/179 (93.85%), Postives = 173/179 (96.65%), Query Frame = 0
BLAST of Lsi06G006660 vs. TAIR 10
Match: AT1G65480.1 (PEBP (phosphatidylethanolamine-binding protein) family protein ) HSP 1 Score: 292.0 bits (746), Expect = 3.3e-79 Identity = 131/169 (77.51%), Postives = 150/169 (88.76%), Query Frame = 0
BLAST of Lsi06G006660 vs. TAIR 10
Match: AT4G20370.1 (PEBP (phosphatidylethanolamine-binding protein) family protein ) HSP 1 Score: 282.0 bits (720), Expect = 3.4e-76 Identity = 128/169 (75.74%), Postives = 145/169 (85.80%), Query Frame = 0
BLAST of Lsi06G006660 vs. TAIR 10
Match: AT5G62040.1 (PEBP (phosphatidylethanolamine-binding protein) family protein ) HSP 1 Score: 216.5 bits (550), Expect = 1.8e-56 Identity = 105/176 (59.66%), Postives = 137/176 (77.84%), Query Frame = 0
BLAST of Lsi06G006660 vs. TAIR 10
Match: AT2G27550.1 (centroradialis ) HSP 1 Score: 212.2 bits (539), Expect = 3.4e-55 Identity = 103/171 (60.23%), Postives = 132/171 (77.19%), Query Frame = 0
BLAST of Lsi06G006660 vs. TAIR 10
Match: AT5G03840.1 (PEBP (phosphatidylethanolamine-binding protein) family protein ) HSP 1 Score: 211.1 bits (536), Expect = 7.5e-55 Identity = 100/169 (59.17%), Postives = 131/169 (77.51%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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