Lsi06G006380 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi06G006380
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptiondnaJ homolog subfamily C member 8-like
Locationchr06: 9310704 .. 9311463 (+)
RNA-Seq ExpressionLsi06G006380
SyntenyLsi06G006380
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CAAAACTCAACAACTAAAAATATATTTTTCCCCCGTAAAAAATGATTACAAAGAAAGGGGGAAGTTCGATCCCAAAGGCTTAACCTTGTAGTAAAGTCTTAAGACAACCTAAATCGCCCGAATTGGATTGATTGTGTATTCGAATTTCGGGTATCGGATTTTCCGAGTTTCTTACAGTCCATCCCTTCCCCTTTCTTCAACCATACAACTTCTTCTCAGGTACTCCAACTGAGTTTGATCCGATAACTTCATAATTCGGCAAAAAGAGGATTAATTTCGACTCTCCAATTCAAGTGGAGGCTGAAACAGGACGCTGCTTTTTATGGGTGAGGCCAATAAATCCACCTCCACCGCTGAGGAGGACTTGTTGCTCAAGAGCTTCTTCGCAGAAGTTAGCGAAGTTGAAAGAGATAACGAAGTTCTCAGGTCTCTCTCGCTCTCTTTCTCTCTTTCTCCCAATTGTTTATCCCCAAGCATCGTTTTCTTGTCATGTATTGGAGGTGTATGACATTAATTCTAGTCAAAGAGCCATTAGGGTTTGTTGGGGTTTTTAGTTCTTTACCTAGGAATGTGAATTTGTTTTATGTAATTTTTCTGTTATAGTTTCTTGATCGTGTTTTTGGTTTTCTTGTGCCTCCTGGGAAACGAGAACCTGTAGTGGTATGTCTATGGGATGCTTTGTAAACCACTTAGATACGTTAGATTGGATTCTTTTTTCCCTGAAAAGTCTGCACCTCTTGCCCAAGGCCCAAGATTTTGA

mRNA sequence

CAAAACTCAACAACTAAAAATATATTTTTCCCCCGTAAAAAATGATTACAAAGAAAGGGGGAAGTTCGATCCCAAAGGCTTAACCTTGTAGTAAAGTCTTAAGACAACCTAAATCGCCCGAATTGGATTGATTGTGTATTCGAATTTCGGGTATCGGATTTTCCGAGTTTCTTACAGTCCATCCCTTCCCCTTTCTTCAACCATACAACTTCTTCTCAGGTACTCCAACTGAGTTTGATCCGATAACTTCATAATTCGGCAAAAAGAGGATTAATTTCGACTCTCCAATTCAAGTGGAGGCTGAAACAGGACGCTGCTTTTTATGGGTGAGGCCAATAAATCCACCTCCACCGCTGAGGAGGACTTGTTGCTCAAGAGCTTCTTCGCAGAAGTTAGCGAAGTTGAAAGAGATAACGAAGTTCTCAGGAATGTGAATTTGTTTTATTGGTATGTCTATGGGATGCTTTGTAAACCACTTAGATACGTTAGATTGGATTCTTTTTTCCCTGAAAAGTCTGCACCTCTTGCCCAAGGCCCAAGATTTTGA

Coding sequence (CDS)

ATGGGTGAGGCCAATAAATCCACCTCCACCGCTGAGGAGGACTTGTTGCTCAAGAGCTTCTTCGCAGAAGTTAGCGAAGTTGAAAGAGATAACGAAGTTCTCAGGAATGTGAATTTGTTTTATTGGTATGTCTATGGGATGCTTTGTAAACCACTTAGATACGTTAGATTGGATTCTTTTTTCCCTGAAAAGTCTGCACCTCTTGCCCAAGGCCCAAGATTTTGA

Protein sequence

MGEANKSTSTAEEDLLLKSFFAEVSEVERDNEVLRNVNLFYWYVYGMLCKPLRYVRLDSFFPEKSAPLAQGPRF
Homology
[Close]
BLAST of Lsi06G006380 vs. ExPASy TrEMBL
Match: A0A6J1HLK2 (dnaJ homolog subfamily C member 8-like OS=Cucurbita maxima OX=3661 GN=LOC111465312 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 7.5e-09
Identity = 35/40 (87.50%), Postives = 38/40 (95.00%), Query Frame = 0 

Query: 1  MGEANKSTSTAEEDLLLKSFFAEVSEVERDNEVLRNVNLF 41
          MGEANKSTSTAEEDLLLKSFFAEVSEVERDNEV+R ++ F
Sbjct: 1  MGEANKSTSTAEEDLLLKSFFAEVSEVERDNEVIRILSCF 40

[Close]
BLAST of Lsi06G006380 vs. ExPASy TrEMBL
Match: A0A6J1F5K2 (dnaJ homolog subfamily C member 8-like OS=Cucurbita moschata OX=3662 GN=LOC111441036 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 7.5e-09
Identity = 35/40 (87.50%), Postives = 38/40 (95.00%), Query Frame = 0 

Query: 1  MGEANKSTSTAEEDLLLKSFFAEVSEVERDNEVLRNVNLF 41
          MGEANKSTSTAEEDLLLKSFFAEVSEVERDNEV+R ++ F
Sbjct: 1  MGEANKSTSTAEEDLLLKSFFAEVSEVERDNEVIRILSCF 40

[Close]
BLAST of Lsi06G006380 vs. ExPASy TrEMBL
Match: A0A0A0LXW6 (J domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G637960 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.7e-08
Identity = 34/40 (85.00%), Postives = 38/40 (95.00%), Query Frame = 0 

Query: 1  MGEANKSTSTAEEDLLLKSFFAEVSEVERDNEVLRNVNLF 41
          MGEANKSTSTAEEDLLLK+FFAEVSEVERDNEV+R ++ F
Sbjct: 1  MGEANKSTSTAEEDLLLKTFFAEVSEVERDNEVIRILSCF 40

[Close]
BLAST of Lsi06G006380 vs. ExPASy TrEMBL
Match: A0A1S3BPJ1 (LOW QUALITY PROTEIN: dnaJ homolog subfamily C member 8 OS=Cucumis melo OX=3656 GN=LOC103491930 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.7e-08
Identity = 34/40 (85.00%), Postives = 38/40 (95.00%), Query Frame = 0 

Query: 1  MGEANKSTSTAEEDLLLKSFFAEVSEVERDNEVLRNVNLF 41
          MGEANKSTSTAEEDLLLK+FFAEVSEVERDNEV+R ++ F
Sbjct: 1  MGEANKSTSTAEEDLLLKTFFAEVSEVERDNEVIRILSCF 40

[Close]
BLAST of Lsi06G006380 vs. ExPASy TrEMBL
Match: A0A6J1JGS2 (dnaJ homolog subfamily C member 8-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111485575 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 6.4e-08
Identity = 33/40 (82.50%), Postives = 37/40 (92.50%), Query Frame = 0 

Query: 1  MGEANKSTSTAEEDLLLKSFFAEVSEVERDNEVLRNVNLF 41
          MGE NKSTSTAEEDLLLK+FFAEVSEVERDNEV+R ++ F
Sbjct: 1  MGEPNKSTSTAEEDLLLKTFFAEVSEVERDNEVIRILSCF 40

[Close]
BLAST of Lsi06G006380 vs. NCBI nr
Match: XP_038879140.1 (dnaJ homolog subfamily C member 8 [Benincasa hispida])

HSP 1 Score: 69.7 bits (169), Expect = 1.2e-08
Identity = 38/51 (74.51%), Postives = 41/51 (80.39%), Query Frame = 0 

Query: 1  MGEANKSTSTAEEDLLLKSFFAEVSEVERDNEVLRNVNLFYWYVYGMLCKP 52
          MGEANKSTSTAEEDLLLKSFFAEVSEVERDNEV+R ++ F    Y  L  P
Sbjct: 1  MGEANKSTSTAEEDLLLKSFFAEVSEVERDNEVIRILSCFKLNPYEYLKLP 51

[Close]
BLAST of Lsi06G006380 vs. NCBI nr
Match: KAG7022165.1 (DnaJ-like subfamily C member 8, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 69.3 bits (168), Expect = 1.6e-08
Identity = 35/40 (87.50%), Postives = 38/40 (95.00%), Query Frame = 0 

Query: 1  MGEANKSTSTAEEDLLLKSFFAEVSEVERDNEVLRNVNLF 41
          MGEANKSTSTAEEDLLLKSFFAEVSEVERDNEV+R ++ F
Sbjct: 1  MGEANKSTSTAEEDLLLKSFFAEVSEVERDNEVIRILSCF 40

[Close]
BLAST of Lsi06G006380 vs. NCBI nr
Match: XP_022965396.1 (dnaJ homolog subfamily C member 8-like [Cucurbita maxima])

HSP 1 Score: 69.3 bits (168), Expect = 1.6e-08
Identity = 35/40 (87.50%), Postives = 38/40 (95.00%), Query Frame = 0 

Query: 1  MGEANKSTSTAEEDLLLKSFFAEVSEVERDNEVLRNVNLF 41
          MGEANKSTSTAEEDLLLKSFFAEVSEVERDNEV+R ++ F
Sbjct: 1  MGEANKSTSTAEEDLLLKSFFAEVSEVERDNEVIRILSCF 40

[Close]
BLAST of Lsi06G006380 vs. NCBI nr
Match: XP_022933700.1 (dnaJ homolog subfamily C member 8-like [Cucurbita moschata] >XP_023520681.1 dnaJ homolog subfamily C member 8-like [Cucurbita pepo subsp. pepo] >KAG6588248.1 DnaJ-like subfamily C member 8, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 69.3 bits (168), Expect = 1.6e-08
Identity = 35/40 (87.50%), Postives = 38/40 (95.00%), Query Frame = 0 

Query: 1  MGEANKSTSTAEEDLLLKSFFAEVSEVERDNEVLRNVNLF 41
          MGEANKSTSTAEEDLLLKSFFAEVSEVERDNEV+R ++ F
Sbjct: 1  MGEANKSTSTAEEDLLLKSFFAEVSEVERDNEVIRILSCF 40

[Close]
BLAST of Lsi06G006380 vs. NCBI nr
Match: XP_008450275.1 (PREDICTED: LOW QUALITY PROTEIN: dnaJ homolog subfamily C member 8 [Cucumis melo])

HSP 1 Score: 68.2 bits (165), Expect = 3.5e-08
Identity = 34/40 (85.00%), Postives = 38/40 (95.00%), Query Frame = 0 

Query: 1  MGEANKSTSTAEEDLLLKSFFAEVSEVERDNEVLRNVNLF 41
          MGEANKSTSTAEEDLLLK+FFAEVSEVERDNEV+R ++ F
Sbjct: 1  MGEANKSTSTAEEDLLLKTFFAEVSEVERDNEVIRILSCF 40

The following BLAST results are available for this feature:
BLAST of Lsi06G006380 vs.
Match NameE-valueIdentityDescription
BLAST of Lsi06G006380 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1HLK27.5e-0987.50dnaJ homolog subfamily C member 8-like OS=Cucurbita maxima OX=3661 GN=LOC1114653... [more]
A0A6J1F5K27.5e-0987.50dnaJ homolog subfamily C member 8-like OS=Cucurbita moschata OX=3662 GN=LOC11144... [more]
A0A0A0LXW61.7e-0885.00J domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G637960 PE=4 SV=1[more]
A0A1S3BPJ11.7e-0885.00LOW QUALITY PROTEIN: dnaJ homolog subfamily C member 8 OS=Cucumis melo OX=3656 G... [more]
A0A6J1JGS26.4e-0882.50dnaJ homolog subfamily C member 8-like isoform X2 OS=Cucurbita maxima OX=3661 GN... [more]
BLAST of Lsi06G006380 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038879140.11.2e-0874.51dnaJ homolog subfamily C member 8 [Benincasa hispida][more]
KAG7022165.11.6e-0887.50DnaJ-like subfamily C member 8, partial [Cucurbita argyrosperma subsp. argyrospe... [more]
XP_022965396.11.6e-0887.50dnaJ homolog subfamily C member 8-like [Cucurbita maxima][more]
XP_022933700.11.6e-0887.50dnaJ homolog subfamily C member 8-like [Cucurbita moschata] >XP_023520681.1 dnaJ... [more]
XP_008450275.13.5e-0885.00PREDICTED: LOW QUALITY PROTEIN: dnaJ homolog subfamily C member 8 [Cucumis melo][more]
BLAST of Lsi06G006380 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi06G006380.1Lsi06G006380.1mRNA