Lsi06G005960 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi06G005960
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	heat stress transcription factor B-4b-like
Location	chr06: 8176535 .. 8177457 (-)
RNA-Seq Expression	Lsi06G005960
Synteny	Lsi06G005960

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTAGGTGGGATTGTTTAAATTAAACCTAGTTGCCTATGAAAAAAGACACTAGCTAGCGTGCTTAAGCACCACTTATGCCTACATGTTAATCATGTTTATCTTTCTGTGAGATTCAAGTTCTACTACCTTTATGAAAAAAATATACTAAAATCTAACCAGTTTTAAGCTATACTCAACTTGGTTAACTTTCTCTCGTTTAATTTGAAGAATAATTCAATTTAACCATTCATGAGTAAAAAGCATTAAATTACCAATATTGTAATATATGACTAATCTTAATTAGTTTTATACATTACAAAGTGTATAAAAACATTCGTTTAAATAACTACTAATTGAGCTATGGTCACATTTTTTTTTCTCTCTTGTAGGGATTTAAGAAAATAGTGGCAGAGAGATGGGAATTTGGGAATGAAAACTTCAAGAAAGGCTAGAAGCAATTACTATTAGAGGTTCAAAGAAGAAAATCTCATAATCCCAACAACAGTCATCAACAAATCCCATTCCATATCTTCCATCTACACAAACACCAAAAACAACCCAGCCTCTGTTACACCACCACTTCCTCCTCTGATCCCGACATCTTGGCAGCGCTAACGCAAGGCAACCGTCGTCTACGACGAAGAAACTTCAAGCTACTATCAGAGCTTCCTCAGATGAAGAATCTCTACTCCGACATCATCTACTTCATCCAAACACAACGTTAAACCACTTGATCACAAAATATGGCAGCAGATTGGTTCCAAAGTTGGTGGAGTTGGATCCTCCATCGCCACTGCCAGCGTCGCTCGAGATCCGAGTAGAAGAGGGAAATGAGATGGTGAAGCTTTTTGGGGTTCCAATTAGAGGGAAGAAGAGAGTGCATCCAGAAGAGAGTGAGGTTCAAATGATGAGCAACCATGGTGGGTATGATATACACTAA

mRNA sequence

ATGCTTAGCGCTAACGCAAGGCAACCGTCGTCTACGACGAAGAAACTTCAAGCTACTATCAGAGCTTCCTCAGATGAAGAATCTCTACTCCGACATCATCTACTTCATCCAAACACAACGTTAAACCACTTGATCACAAAATATGGCAGCAGATTGGTTCCAAAGTTGGTGGAGTTGGATCCTCCATCGCCACTGCCAGCGTCGCTCGAGATCCGAGTAGAAGAGGGAAATGAGATGGTGAAGCTTTTTGGGGTTCCAATTAGAGGGAAGAAGAGAGTGCATCCAGAAGAGAGTGAGGTTCAAATGATGAGCAACCATGGTGGGTATGATATACACTAA

Coding sequence (CDS)

ATGCTTAGCGCTAACGCAAGGCAACCGTCGTCTACGACGAAGAAACTTCAAGCTACTATCAGAGCTTCCTCAGATGAAGAATCTCTACTCCGACATCATCTACTTCATCCAAACACAACGTTAAACCACTTGATCACAAAATATGGCAGCAGATTGGTTCCAAAGTTGGTGGAGTTGGATCCTCCATCGCCACTGCCAGCGTCGCTCGAGATCCGAGTAGAAGAGGGAAATGAGATGGTGAAGCTTTTTGGGGTTCCAATTAGAGGGAAGAAGAGAGTGCATCCAGAAGAGAGTGAGGTTCAAATGATGAGCAACCATGGTGGGTATGATATACACTAA

Protein sequence

MLSANARQPSSTTKKLQATIRASSDEESLLRHHLLHPNTTLNHLITKYGSRLVPKLVELDPPSPLPASLEIRVEEGNEMVKLFGVPIRGKKRVHPEESEVQMMSNHGGYDIH

Homology

[Close]

BLAST of Lsi06G005960 vs. ExPASy TrEMBL
Match: A0A0A0M2Y7 (HSF_DOMAIN domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G629180 PE=3 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.5e-13
Identity = 46/58 (79.31%), Postives = 48/58 (82.76%), Query Frame = 0


Query: 44  LITKYGSRLVPKLVELDPP-SPLPASLEIRVEEGNEMVKLFGVPIRGKKRVHPEESEV 101
           L  KY +R VPKLVELDPP SP P S EIR+EEGN MVKLFGVPIRGKKRV PEESEV
Sbjct: 200 LDNKYCNRSVPKLVELDPPSSPTPMSPEIRLEEGNGMVKLFGVPIRGKKRVLPEESEV 257

[Close]

BLAST of Lsi06G005960 vs. ExPASy TrEMBL
Match: A0A5D3DXU1 (Heat stress transcription factor B-4b-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold289G00970 PE=3 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 2.2e-12
Identity = 44/58 (75.86%), Postives = 48/58 (82.76%), Query Frame = 0


Query: 44  LITKYGSRLVPKLVELD-PPSPLPASLEIRVEEGNEMVKLFGVPIRGKKRVHPEESEV 101
           L  KY +R VPKLVELD P SP+P S EIR+EEG+ MVKLFGVPIRGKKRV PEESEV
Sbjct: 200 LDNKYCNRSVPKLVELDSPSSPMPMSPEIRLEEGSGMVKLFGVPIRGKKRVLPEESEV 257

[Close]

BLAST of Lsi06G005960 vs. ExPASy TrEMBL
Match: A0A5A7ULL5 (Heat stress transcription factor B-4b-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold319G001010 PE=3 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 2.2e-12
Identity = 44/58 (75.86%), Postives = 48/58 (82.76%), Query Frame = 0


Query: 44  LITKYGSRLVPKLVELD-PPSPLPASLEIRVEEGNEMVKLFGVPIRGKKRVHPEESEV 101
           L  KY +R VPKLVELD P SP+P S EIR+EEG+ MVKLFGVPIRGKKRV PEESEV
Sbjct: 199 LDNKYCNRSVPKLVELDSPSSPMPMSPEIRLEEGSGMVKLFGVPIRGKKRVLPEESEV 256

[Close]

BLAST of Lsi06G005960 vs. ExPASy TrEMBL
Match: A0A1S3BPZ9 (heat stress transcription factor B-4b-like OS=Cucumis melo OX=3656 GN=LOC103491968 PE=3 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 2.2e-12
Identity = 44/58 (75.86%), Postives = 48/58 (82.76%), Query Frame = 0


Query: 44  LITKYGSRLVPKLVELD-PPSPLPASLEIRVEEGNEMVKLFGVPIRGKKRVHPEESEV 101
           L  KY +R VPKLVELD P SP+P S EIR+EEG+ MVKLFGVPIRGKKRV PEESEV
Sbjct: 200 LDNKYCNRSVPKLVELDSPSSPMPMSPEIRLEEGSGMVKLFGVPIRGKKRVLPEESEV 257

[Close]

BLAST of Lsi06G005960 vs. ExPASy TrEMBL
Match: A0A6J1JGJ8 (heat stress transcription factor B-4b-like OS=Cucurbita maxima OX=3661 GN=LOC111485507 PE=3 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 6.1e-10
Identity = 42/63 (66.67%), Postives = 47/63 (74.60%), Query Frame = 0


Query: 47  KYGSRLVPKLVEL-DPPSPLPASLEIRVEEGNEMVKLFGVPIRGKKRVHPEESEVQMMSN 106
           KYG R VPKLV+L  PP P P   E  VEEG+  V+LFGVPIRGKKRVH EE E+Q MS+
Sbjct: 196 KYG-RSVPKLVDLKPPPPPPPPQTEAGVEEGSGSVQLFGVPIRGKKRVHHEEGELQ-MSS 255

Query: 107 HGG 109
           HGG
Sbjct: 256 HGG 256

[Close]

BLAST of Lsi06G005960 vs. NCBI nr
Match: XP_004139066.1 (heat stress transcription factor B-4b [Cucumis sativus] >KGN66561.1 hypothetical protein Csa_007203 [Cucumis sativus])

HSP 1 Score: 85.5 bits (210), Expect = 3.2e-13
Identity = 46/58 (79.31%), Postives = 48/58 (82.76%), Query Frame = 0


Query: 44  LITKYGSRLVPKLVELDPP-SPLPASLEIRVEEGNEMVKLFGVPIRGKKRVHPEESEV 101
           L  KY +R VPKLVELDPP SP P S EIR+EEGN MVKLFGVPIRGKKRV PEESEV
Sbjct: 200 LDNKYCNRSVPKLVELDPPSSPTPMSPEIRLEEGNGMVKLFGVPIRGKKRVLPEESEV 257

[Close]

BLAST of Lsi06G005960 vs. NCBI nr
Match: TYK28179.1 (heat stress transcription factor B-4b-like [Cucumis melo var. makuwa])

HSP 1 Score: 81.6 bits (200), Expect = 4.6e-12
Identity = 44/58 (75.86%), Postives = 48/58 (82.76%), Query Frame = 0


Query: 44  LITKYGSRLVPKLVELD-PPSPLPASLEIRVEEGNEMVKLFGVPIRGKKRVHPEESEV 101
           L  KY +R VPKLVELD P SP+P S EIR+EEG+ MVKLFGVPIRGKKRV PEESEV
Sbjct: 200 LDNKYCNRSVPKLVELDSPSSPMPMSPEIRLEEGSGMVKLFGVPIRGKKRVLPEESEV 257

[Close]

BLAST of Lsi06G005960 vs. NCBI nr
Match: KAA0055968.1 (heat stress transcription factor B-4b-like [Cucumis melo var. makuwa])

HSP 1 Score: 81.6 bits (200), Expect = 4.6e-12
Identity = 44/58 (75.86%), Postives = 48/58 (82.76%), Query Frame = 0


Query: 44  LITKYGSRLVPKLVELD-PPSPLPASLEIRVEEGNEMVKLFGVPIRGKKRVHPEESEV 101
           L  KY +R VPKLVELD P SP+P S EIR+EEG+ MVKLFGVPIRGKKRV PEESEV
Sbjct: 199 LDNKYCNRSVPKLVELDSPSSPMPMSPEIRLEEGSGMVKLFGVPIRGKKRVLPEESEV 256

[Close]

BLAST of Lsi06G005960 vs. NCBI nr
Match: XP_008450326.1 (PREDICTED: heat stress transcription factor B-4b-like [Cucumis melo])

HSP 1 Score: 81.6 bits (200), Expect = 4.6e-12
Identity = 44/58 (75.86%), Postives = 48/58 (82.76%), Query Frame = 0


Query: 44  LITKYGSRLVPKLVELD-PPSPLPASLEIRVEEGNEMVKLFGVPIRGKKRVHPEESEV 101
           L  KY +R VPKLVELD P SP+P S EIR+EEG+ MVKLFGVPIRGKKRV PEESEV
Sbjct: 200 LDNKYCNRSVPKLVELDSPSSPMPMSPEIRLEEGSGMVKLFGVPIRGKKRVLPEESEV 257

[Close]

BLAST of Lsi06G005960 vs. NCBI nr
Match: XP_023516316.1 (heat stress transcription factor B-4b-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 77.0 bits (188), Expect = 1.1e-10
Identity = 44/63 (69.84%), Postives = 47/63 (74.60%), Query Frame = 0


Query: 47  KYGSRLVPKLVEL-DPPSPLPASLEIRVEEGNEMVKLFGVPIRGKKRVHPEESEVQMMSN 106
           KYG R VPKLV+L  PP P P   E  VEEGN  VKLFGVPIRGKKRVH EE E+Q MS+
Sbjct: 200 KYG-RSVPKLVDLKPPPPPPPPQTEAGVEEGNGSVKLFGVPIRGKKRVHHEEGELQ-MSS 259

Query: 107 HGG 109
           HGG
Sbjct: 260 HGG 260

The following BLAST results are available for this feature:

BLAST of Lsi06G005960 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi06G005960 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0M2Y7	1.5e-13	79.31	HSF_DOMAIN domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G629180 ...	[more]
A0A5D3DXU1	2.2e-12	75.86	Heat stress transcription factor B-4b-like OS=Cucumis melo var. makuwa OX=119469...	[more]
A0A5A7ULL5	2.2e-12	75.86	Heat stress transcription factor B-4b-like OS=Cucumis melo var. makuwa OX=119469...	[more]
A0A1S3BPZ9	2.2e-12	75.86	heat stress transcription factor B-4b-like OS=Cucumis melo OX=3656 GN=LOC1034919...	[more]
A0A6J1JGJ8	6.1e-10	66.67	heat stress transcription factor B-4b-like OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]

BLAST of Lsi06G005960 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004139066.1	3.2e-13	79.31	heat stress transcription factor B-4b [Cucumis sativus] >KGN66561.1 hypothetical...	[more]
TYK28179.1	4.6e-12	75.86	heat stress transcription factor B-4b-like [Cucumis melo var. makuwa]	[more]
KAA0055968.1	4.6e-12	75.86	heat stress transcription factor B-4b-like [Cucumis melo var. makuwa]	[more]
XP_008450326.1	4.6e-12	75.86	PREDICTED: heat stress transcription factor B-4b-like [Cucumis melo]	[more]
XP_023516316.1	1.1e-10	69.84	heat stress transcription factor B-4b-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Lsi06G005960 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi06G005960.1	Lsi06G005960.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006357	regulation of transcription by RNA polymerase II
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0008168	methyltransferase activity
molecular_function	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding