Lsi06G005800 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi06G005800
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUnknown protein
Locationchr06: 7755351 .. 7755623 (+)
RNA-Seq ExpressionLsi06G005800
SyntenyLsi06G005800
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTCGGCCGCGACACCAACGTCAGCTCTCTCAAGTTCTTCCGCCGGACCTGATCTCCGGCGAAGATCCGGCTCAGATCTTGGACTTCGGCAGGGGAGCCGCCGGAGCAGTTTCCGGCCAACCCCATCAGGCATCTGAAGCTTCTGCAAATGCGGCTGCCACCGCCGCCACCGCCGTCGCCGTACTTCAGCGGTCCAAGAATCCCGCCGGTCAGGAAGGCTCCGGCGCCAGCCACTTCCCTCAGCTCCCGAAAACGCCGCCGTCTACTTGA

mRNA sequence

ATGCCTCGGCCGCGACACCAACGTCAGCTCTCTCAAGTTCTTCCGCCGGACCTGATCTCCGGCGAAGATCCGGCTCAGATCTTGGACTTCGGCAGGGGAGCCGCCGGAGCAGTTTCCGGCCAACCCCATCAGGCATCTGAAGCTTCTGCAAATGCGGCTGCCACCGCCGCCACCGCCGTCGCCGTACTTCAGCGGTCCAAGAATCCCGCCGGTCAGGAAGGCTCCGGCGCCAGCCACTTCCCTCAGCTCCCGAAAACGCCGCCGTCTACTTGA

Coding sequence (CDS)

ATGCCTCGGCCGCGACACCAACGTCAGCTCTCTCAAGTTCTTCCGCCGGACCTGATCTCCGGCGAAGATCCGGCTCAGATCTTGGACTTCGGCAGGGGAGCCGCCGGAGCAGTTTCCGGCCAACCCCATCAGGCATCTGAAGCTTCTGCAAATGCGGCTGCCACCGCCGCCACCGCCGTCGCCGTACTTCAGCGGTCCAAGAATCCCGCCGGTCAGGAAGGCTCCGGCGCCAGCCACTTCCCTCAGCTCCCGAAAACGCCGCCGTCTACTTGA

Protein sequence

MPRPRHQRQLSQVLPPDLISGEDPAQILDFGRGAAGAVSGQPHQASEASANAAATAATAVAVLQRSKNPAGQEGSGASHFPQLPKTPPST
Homology
BLAST of Lsi06G005800 vs. ExPASy TrEMBL
Match: A0A0A0M0A1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G629040 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 1.8e-28
Identity = 74/90 (82.22%), Postives = 77/90 (85.56%), Query Frame = 0

Query: 1  MPRPRHQRQLSQVLPPDLISGEDPAQILDFGRGAAGAVSGQPHQASEASANAAATAATAV 60
          MPRPRHQRQLSQVLPPD IS EDP+QILDF  G AGAVSGQPHQ S+A+ANAAA AA A 
Sbjct: 1  MPRPRHQRQLSQVLPPDFISAEDPSQILDFSIGVAGAVSGQPHQPSQATANAAA-AAAAA 60

Query: 61 AVLQRSKNPAGQEGSGASHFPQLPKTPPST 91
           VLQRSKNPAGQEGSGA HF QLPKT PST
Sbjct: 61 TVLQRSKNPAGQEGSGAGHFSQLPKTAPST 89

BLAST of Lsi06G005800 vs. NCBI nr
Match: KGN66547.1 (hypothetical protein Csa_007065 [Cucumis sativus])

HSP 1 Score: 134.8 bits (338), Expect = 3.7e-28
Identity = 74/90 (82.22%), Postives = 77/90 (85.56%), Query Frame = 0

Query: 1  MPRPRHQRQLSQVLPPDLISGEDPAQILDFGRGAAGAVSGQPHQASEASANAAATAATAV 60
          MPRPRHQRQLSQVLPPD IS EDP+QILDF  G AGAVSGQPHQ S+A+ANAAA AA A 
Sbjct: 1  MPRPRHQRQLSQVLPPDFISAEDPSQILDFSIGVAGAVSGQPHQPSQATANAAA-AAAAA 60

Query: 61 AVLQRSKNPAGQEGSGASHFPQLPKTPPST 91
           VLQRSKNPAGQEGSGA HF QLPKT PST
Sbjct: 61 TVLQRSKNPAGQEGSGAGHFSQLPKTAPST 89

BLAST of Lsi06G005800 vs. NCBI nr
Match: KAG6590166.1 (hypothetical protein SDJN03_15589, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 118.2 bits (295), Expect = 3.6e-23
Identity = 66/92 (71.74%), Postives = 73/92 (79.35%), Query Frame = 0

Query: 1  MPRPRHQRQLSQVLPPDLISGEDPAQILDFGRGAAGAVSGQPHQASEASANAAATAATAV 60
          MPRPRHQRQ SQVLPP+LISG DP+QILDFG+  A  VSGQPH+A+EA+ N     ATA 
Sbjct: 1  MPRPRHQRQPSQVLPPELISGVDPSQILDFGQAVARTVSGQPHKATEAATN----VATAA 60

Query: 61 AVLQRSKNPAGQE--GSGASHFPQLPKTPPST 91
          AVLQRSK   GQE  GSG+ HFPQLPKTPPST
Sbjct: 61 AVLQRSKTSGGQEGSGSGSGHFPQLPKTPPST 88

BLAST of Lsi06G005800 vs. NCBI nr
Match: KAG6588222.1 (hypothetical protein SDJN03_16787, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 109.0 bits (271), Expect = 2.2e-20
Identity = 64/91 (70.33%), Postives = 70/91 (76.92%), Query Frame = 0

Query: 1  MPRPRHQRQLSQVLPPDLISGEDPAQILDFGRGAAGAVSGQPHQASEASANAAATAATAV 60
          MPRPRH RQ SQVLPP+LISGEDP+QILDF R  AGA SGQPHQA+  +A AAA AA A 
Sbjct: 1  MPRPRHHRQPSQVLPPELISGEDPSQILDFERPVAGAFSGQPHQAAPEAAAAAAAAANAA 60

Query: 61 A--VLQRSKNPAGQEGSGASHFPQLPKTPPS 90
          A  V+Q+SK  A QE SGA  FPQL KTPPS
Sbjct: 61 ASTVIQQSKIAASQEVSGAEQFPQLTKTPPS 91

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0M0A11.8e-2882.22Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G629040 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
KGN66547.13.7e-2882.22hypothetical protein Csa_007065 [Cucumis sativus][more]
KAG6590166.13.6e-2371.74hypothetical protein SDJN03_15589, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6588222.12.2e-2070.33hypothetical protein SDJN03_16787, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..24
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 64..90

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi06G005800.1Lsi06G005800.1mRNA