Lsi06G005760 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi06G005760
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Protein LATERAL ROOT PRIMORDIUM 1
Location	chr06: 7568095 .. 7572403 (+)
RNA-Seq Expression	Lsi06G005760
Synteny	Lsi06G005760

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTAACAGAGAATTACAATTTTTGTAAAAAAAAAGTCCAATTATGTAGGAACTAAAATTCTATTTCAAATATATATATATATATATATATATATATATAATACCAGGGCGTATATAATAGTACAATTGTGTACAAGTGAGATTGAGACAATATTTTTAGAGAGAAAAAGAAAAAGGTAAAAAAGGAATAGAAAAAAGAAAAAGTTGGCGATGACATTAATGGCTGCAGATACTGTGAAAACTACAAAAGCACTTTTTAGTGTTTCTTCAATCCATTGACAACCAATACATCCTTCTCTCAATTCTCAATTCTCAATTCTCAATCCCAATTCTCCTTCTCTTCACTCTCTCTAAATTATCAAAATCATAGATCCATGTTGCTTCATCACTAATCCTCAGATCCAATTTAGATTTGTTTTCTTTAAAAAAAAAAAAATTTGATTTAGGGTTTTTCTTCTTCTTCGCCGGAGATTCACCAGCTGTGGCTGCCGCACGCCGTCTTCCATCTGATTCCGGTGCCTTCGCCGACTGGGTGGCTCCTCCCTCTGCCATCGTCGCCGATGAACTCTCCCTCGGTTTCAATTCCACCGCCACCGTTCCACCGGCCAGGATGTGGCCCTCGTCCAGACCCCTTGCCGTCGGTTATGGCCACACGGCGGCCCAGGCGCCGGACATGGTGGGTCTCATGGCCTCGGGCTTCGGAGTCGGCGTTAGCGTTTTGCCTCTCCTTACCGGCCTTGCGCCGTCGAGTGTAGAAATTGAGGAGGCTAATTTAATGATCAGCCGCGGCGGCGACGGTGGCGGCGGAGTTCAATTCAATGGGAATAATTTGGATGGGTTTGGGATTTTGGGAGGTGGGTCGAGCTTGAATTCCGGCGCCGGAACTTGCCATGACTGTGGGAACCAAGCGAAGAAAGATTGCAGCCACCGGCGGTGCCGCAGCTGCTGTAAAAGCCGTGGATTTGATTGTTCTACTCACGTGAAGAGCACGTGGGTTCCGGCCGCTCGGCGAAGAGAACGTCAGATGTTGGGCGCAGCGTCAGAAGCGGCCGCCGCATGCGGTGGCGGGACATCATCTGGGTCAACCTCCGGCGGGAAGAAGCCGAGACTGATTGCTTCACAGACAACTACCAATTCCCATACTTCCACTTCCAACACTCCAACACCAAGCTTCGACGCTTCCTCAGGTCAAATCTCATTTTTATTTTAAATTTATTATTTCATTTAAAAAATATATATATATTTTAAGCTGCACCAATCTTCTTATTATTACTCCGACCACATAATTGAAAAAATTTAAAAATATTAAAAAAAAAAAATATTTGTCACATAAATTGTCATTGTACAATAAGATGAGTTACAAATGAACAAAACTCATACTTGTTTTTTTTATATATACATTTTGATTTTGATTATTAATTCGTTATTAATAATATTTGTTGGTTTCTGATTTTTGAAAGTTATGAGAATTTTTATTTTCATTTTTCGTAAATTGTCTAAAAAAAAGTATTTTTTTAGTTGTTAGATCTTTGTTACAATTTTTGATAAAGTGAATAAGAAAATAAAGAAATTCTTATGTTAAATAGAGTTTATAAACTTATTTTTTTTTAAAAAAAAGTACTAAATTGTTCTAAGTTTAAATAATTATCAAATGAAGTCTAAATTTCAAATGGTTGATTTGTATTCGAGTTTAATCCAAGTGTTTACTTATTTGAACTTAAAAAAAAGATAAAAGAGAGAAAGAAAGATACACATATTTTTGGTACTTTATCTTTTATCTTTTTTTTCAACAAATGAATGTCATATTTTGAGTGTTTCAAGATTTATCAAGTGAAGCATGGACAAGTATTAAGAAGCAAAATAATAATAACAAAATGAACCCAATTAGTTATTATTATTGTTATCATCATTTAAAATTTAAAATATTTAAAATATTTAAAATATACTTTTTGTTATTGGACTGTTTTCAAATATAGAAAAATGAGTCAAATTAGGGAAATTACATTAAACAGAAAAAATGTCAAACTATTTACAAATATAGAAATTTTTTACTGTCTATCAGTGATAGACTGCGATAGAATTCTATCACTCAAGCAAATAAATTCTATCGCAGTCTATCATTGATAGACAGTAAATTTTTTCTATATTTGTAAATAGTTTGACTCATTTTTCTATATTTAAAAAGAGTCCGTCAAACTATTTACAAATATAGAAAAATTTAGTGATAGACAGCGATAGAATTCTATCGTTTGAGCAATAGACTTCTATCACGGTCTATTGCTGATAGACAGTGAAATTTTTCTATATTTGTAAATAGTTTGATATTTTTTTTGTTTGTTGATTGTAATTTTCTGTTGTTTTTTAAAATAAATAAGCGATTTGAAATTTGAAACTATATATCTTTTTTAAATAACTATAAAATTTTGGATGGTGAAACGGGTGAGGAGTAAGTAGAATCTTGTACTAATTAAGAGAGAAAAATGTAGAAAGGAAGGGAATTTTTTTTCATCCACCCAATTGTAGGTACAAATTATTCTTTTTTAAATGTTTTTTCCTAAAAATTGTTTTTTAATTGTTCTAACTATATATATAGTGGAATAATATTGCTTGAATTAGATCTATAAACTTTAAAAACTTCATGTAATAAGTCTCTCCACTTTTAAAATGTCTAATAAATTTTTAGATTTTATATTTAATAAATTTCTAAAATTTTAAAATACAGTCAAAATAAAATGGAAAAAAAAAAAAAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAAAAAAAAAAAAAACTAAACATTCAAAAAATTTGGTGACTTTATCACACAAAATAATAAAGAACATTTTAAACAACCAAACTAATAATCAAATCTTTATTCTTTCAATTTATTCCAAAGAATGTGATGGAATATTATTGGGTTGTTTTGTGTTAACTTTAAGCAACAATGCAGCCGCCGATATGAGTTGTAAAAAGGCAAAGAAGCTGCCGGAACAAATCCGAGCGCCGGCAGTGTTCAAGTGCGTCCGGGTGACGGCGGTGGAGGGTGGCAGCGGAGGGAATGAATATGCATATCAAGCCGTCGTGAAGATCGGCGGCCATATTTTTAAAGGCTATTTATACGACCATGGAGTGGAAGCTGCTAGAGATGGGTTTCCAACGTTGTCCAATTTGCATCTCGGAGATGGCGGTTTGGCATCATCACCGGTCATTAATCCTGCTGACGTTTATGGCAGCTCCACCGCTCGCGGCGGGGGAATGGCTGGGGGTTCTGGCTATGGTAATCCCATAAATTGATCCATATTATTATTTAAACATTTTCAATGTTGGGTTATAGCTTTTGAATTTATTTAGTGGAAAAATAAGAGATAGGAGCCTCTATTTATGGTTTATTTTTATTTGTATATTTATATTGCTTACAAATATAAATATATTCTATTAATATTTAA

mRNA sequence

ATGTTAACAGAGAATTACAATTTTTGGTTTTTCTTCTTCTTCGCCGGAGATTCACCAGCTGTGGCTGCCGCACGCCGTCTTCCATCTGATTCCGGTGCCTTCGCCGACTGGGTGGCTCCTCCCTCTGCCATCGTCGCCGATGAACTCTCCCTCGGTTTCAATTCCACCGCCACCGTTCCACCGGCCAGGATGTGGCCCTCGTCCAGACCCCTTGCCGTCGGTTATGGCCACACGGCGGCCCAGGCGCCGGACATGGTGGGTCTCATGGCCTCGGGCTTCGGAGTCGGCGTTAGCGTTTTGCCTCTCCTTACCGGCCTTGCGCCGTCGAGTGTAGAAATTGAGGAGGCTAATTTAATGATCAGCCGCGGCGGCGACGGTGGCGGCGGAGTTCAATTCAATGGGAATAATTTGGATGGGTTTGGGATTTTGGGAGGTGGGTCGAGCTTGAATTCCGGCGCCGGAACTTGCCATGACTGTGGGAACCAAGCGAAGAAAGATTGCAGCCACCGGCGGTGCCGCAGCTGCTGTAAAAGCCGTGGATTTGATTGTTCTACTCACGTGAAGAGCACGTGGGTTCCGGCCGCTCGGCGAAGAGAACGTCAGATGTTGGGCGCAGCGTCAGAAGCGGCCGCCGCATGCGGTGGCGGGACATCATCTGGGTCAACCTCCGGCGGGAAGAAGCCGAGACTGATTGCTTCACAGACAACTACCAATTCCCATACTTCCACTTCCAACACTCCAACACCAAGCTTCGACGCTTCCTCAGCCGCCGATATGAGTTGTAAAAAGGCAAAGAAGCTGCCGGAACAAATCCGAGCGCCGGCAGTGTTCAAGTGCGTCCGGGTGACGGCGGTGGAGGGTGGCAGCGGAGGGAATGAATATGCATATCAAGCCGTCGTGAAGATCGGCGGCCATATTTTTAAAGGCTATTTATACGACCATGGAGTGGAAGCTGCTAGAGATGGGTTTCCAACGTTGTCCAATTTGCATCTCGGAGATGGCGGTTTGGCATCATCACCGGTCATTAATCCTGCTGACGTTTATGGCAGCTCCACCGCTCGCGGCGGGGGAATGGCTGGGGGTTCTGGCTATGGTAATCCCATAAATTGATCCATATTATTATTTAAACATTTTCAATGTTGGGTTATAGCTTTTGAATTTATTTAGTGGAAAAATAAGAGATAGGAGCCTCTATTTATGGTTTATTTTTATTTGTATATTTATATTGCTTACAAATATAAATATATTCTATTAATATTTAA

Coding sequence (CDS)

ATGTTAACAGAGAATTACAATTTTTGGTTTTTCTTCTTCTTCGCCGGAGATTCACCAGCTGTGGCTGCCGCACGCCGTCTTCCATCTGATTCCGGTGCCTTCGCCGACTGGGTGGCTCCTCCCTCTGCCATCGTCGCCGATGAACTCTCCCTCGGTTTCAATTCCACCGCCACCGTTCCACCGGCCAGGATGTGGCCCTCGTCCAGACCCCTTGCCGTCGGTTATGGCCACACGGCGGCCCAGGCGCCGGACATGGTGGGTCTCATGGCCTCGGGCTTCGGAGTCGGCGTTAGCGTTTTGCCTCTCCTTACCGGCCTTGCGCCGTCGAGTGTAGAAATTGAGGAGGCTAATTTAATGATCAGCCGCGGCGGCGACGGTGGCGGCGGAGTTCAATTCAATGGGAATAATTTGGATGGGTTTGGGATTTTGGGAGGTGGGTCGAGCTTGAATTCCGGCGCCGGAACTTGCCATGACTGTGGGAACCAAGCGAAGAAAGATTGCAGCCACCGGCGGTGCCGCAGCTGCTGTAAAAGCCGTGGATTTGATTGTTCTACTCACGTGAAGAGCACGTGGGTTCCGGCCGCTCGGCGAAGAGAACGTCAGATGTTGGGCGCAGCGTCAGAAGCGGCCGCCGCATGCGGTGGCGGGACATCATCTGGGTCAACCTCCGGCGGGAAGAAGCCGAGACTGATTGCTTCACAGACAACTACCAATTCCCATACTTCCACTTCCAACACTCCAACACCAAGCTTCGACGCTTCCTCAGCCGCCGATATGAGTTGTAAAAAGGCAAAGAAGCTGCCGGAACAAATCCGAGCGCCGGCAGTGTTCAAGTGCGTCCGGGTGACGGCGGTGGAGGGTGGCAGCGGAGGGAATGAATATGCATATCAAGCCGTCGTGAAGATCGGCGGCCATATTTTTAAAGGCTATTTATACGACCATGGAGTGGAAGCTGCTAGAGATGGGTTTCCAACGTTGTCCAATTTGCATCTCGGAGATGGCGGTTTGGCATCATCACCGGTCATTAATCCTGCTGACGTTTATGGCAGCTCCACCGCTCGCGGCGGGGGAATGGCTGGGGGTTCTGGCTATGGTAATCCCATAAATTGA

Protein sequence

MLTENYNFWFFFFFAGDSPAVAAARRLPSDSGAFADWVAPPSAIVADELSLGFNSTATVPPARMWPSSRPLAVGYGHTAAQAPDMVGLMASGFGVGVSVLPLLTGLAPSSVEIEEANLMISRGGDGGGGVQFNGNNLDGFGILGGGSSLNSGAGTCHDCGNQAKKDCSHRRCRSCCKSRGFDCSTHVKSTWVPAARRRERQMLGAASEAAAACGGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTPSFDASSAADMSCKKAKKLPEQIRAPAVFKCVRVTAVEGGSGGNEYAYQAVVKIGGHIFKGYLYDHGVEAARDGFPTLSNLHLGDGGLASSPVINPADVYGSSTARGGGMAGGSGYGNPIN

Homology

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BLAST of Lsi06G005760 vs. ExPASy Swiss-Prot
Match: Q94CK9 (Protein LATERAL ROOT PRIMORDIUM 1 OS=Arabidopsis thaliana OX=3702 GN=LRP1 PE=1 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 5.7e-54
Identity = 144/297 (48.48%), Postives = 182/297 (61.28%), Query Frame = 0


Query: 90  ASGFGVGVSVLPLLT-GLAPSSVEIEEANLM-------ISRGGDGGGGVQFNGNNLDGFG 149
           A+   +GV V+PLLT G    +VE  + N +        +        + F   N    G
Sbjct: 35  AAAAALGVGVIPLLTAGTPQQNVEDSDINFLGNNRRWQNNNNNHETQYLHFKSTNQTTVG 94

Query: 150 ILGGGSSLNSGA---GTCHDCGNQAKKDCSHRRCRSCCKSRGFDCSTHVKSTWVPAARRR 209
                S   SGA    TC DCGNQAKK+C  RRCR+CCKSRGFDCSTHVKSTWV AARRR
Sbjct: 95  TSSNNSGSGSGASGTATCQDCGNQAKKECKQRRCRTCCKSRGFDCSTHVKSTWVSAARRR 154

Query: 210 ERQMLGAASEAAAACGGGTSSGSTSGGKKPRLIAS----QTTTNSHTSTSNTPTPSFDAS 269
           ERQ++   +   A    G+S  ++SG KKPR++ S    Q    SHTSTSNTP  SF+ S
Sbjct: 155 ERQVMPTGANPTA----GSSLSTSSGTKKPRIVGSQQQQQQQATSHTSTSNTPPQSFETS 214

Query: 270 SAADMSCKKAKKLPEQIRAPAVFKCVRVTAVEGGSGGNEYAYQAVVKIGGHIFKGYLYDH 329
           S+        +  P Q+RA AVFKCVRVTAVE   G +EYAYQAVVKIGGH+FKG+LYD 
Sbjct: 215 SSRQDGGGSREAWPGQVRAAAVFKCVRVTAVE--DGDDEYAYQAVVKIGGHVFKGFLYDQ 274

Query: 330 GVEAARDGFPTLSNLHLG------DGGLASSPVINPAD-VYGSSTARGGGMAGGSGY 365
           G+E  ++GFP++S+LHLG      +G  AS+P+++P + VYG     GGG +GG  Y
Sbjct: 275 GLE-PKEGFPSMSDLHLGGSANNHNGVSASAPILDPPNVVYG-----GGGGSGGGFY 319

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BLAST of Lsi06G005760 vs. ExPASy Swiss-Prot
Match: O65517 (Protein SHI RELATED SEQUENCE 2 OS=Arabidopsis thaliana OX=3702 GN=SRS2 PE=1 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 1.5e-30
Identity = 94/215 (43.72%), Postives = 120/215 (55.81%), Query Frame = 0


Query: 155 TCHDCGNQAKKDCSHRRCRSCCKSRGFDCSTHVKSTWVPAARRRERQMLGAASEAAAACG 214
           +C DCGNQAKKDC+H RCR+CCKSRGFDCSTHV+STW+P ARRRERQ     S +    G
Sbjct: 93  SCRDCGNQAKKDCTHMRCRTCCKSRGFDCSTHVRSTWIPVARRRERQQQLHMSTSGG--G 152

Query: 215 GGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTPSFDASSAADMSCKKAKKLPEQIRAP 274
           GG+ SG   GG        +  T   TS+S+   PS   S+  +M        P ++ + 
Sbjct: 153 GGSGSGGAGGGGSSIPKRHRDPTLPGTSSSSR-LPSH--SAGLEMG---EASFPGEVSSD 212

Query: 275 AVFKCVRVTAVEGGSGGNEYAYQAVVKIGGHIFKGYLYDHGVEAARDGFPTLSNLHLGDG 334
           A+F+CV+++ V+ G G  +YAYQ  V IGGH+FKG LYD G        P  S +  G G
Sbjct: 213 ALFRCVKMSGVDDG-GDGQYAYQTTVNIGGHLFKGILYDQG--------PESSYMSGGSG 272

Query: 335 GLASSPVINPADVYGSSTARGGGMAGGSGYGNPIN 370
           G         +D   SS       AGG G G+P N
Sbjct: 273 G---------SDHQSSS-------AGGGGGGHPFN 274

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BLAST of Lsi06G005760 vs. ExPASy Swiss-Prot
Match: Q9SD40 (Protein SHI RELATED SEQUENCE 1 OS=Arabidopsis thaliana OX=3702 GN=SRS1 PE=1 SV=2)

HSP 1 Score: 131.3 bits (329), Expect = 2.2e-29
Identity = 106/319 (33.23%), Postives = 142/319 (44.51%), Query Frame = 0


Query: 54  NSTATVPPARMWPSSRPLAVGYGHTAAQAPDMVGLMASGFGVGVS---VLPLLTGLAPSS 113
           +S A +    +W +     + + H   Q    +   A+G GVG S      +    + + 
Sbjct: 61  SSNAALGTLELWQNHNQQEIMFQHQQHQQRLDLYSSAAGLGVGPSNHNQFDISGETSTAG 120

Query: 114 VEIEEANLMISRGGDGGGGVQFNGNNLDGFGILGGGSSLNSGAGTCHDCGNQAKKDCSHR 173
                A +MI  GG GGG                      SG  +C DCGNQAKKDCSH 
Sbjct: 121 AGRAAAMMMIRSGGSGGG----------------------SGGVSCQDCGNQAKKDCSHM 180

Query: 174 RCRSCCKSRGFDCSTHVKSTWVPAARRRERQMLGAASEAAAACGGGTSSGSTSGGKKPRL 233
           RCR+CCKSRGF+CSTHV+STWVPAA+RRERQ   A  +                  + +L
Sbjct: 181 RCRTCCKSRGFECSTHVRSTWVPAAKRRERQQQLATVQ-----------------PQTQL 240

Query: 234 IASQTTTNSHTSTSNTPTPSFDASSAADMSCKKAKKLPEQIRAPAVFKCVRVTAVEGGSG 293
              ++    H       + S   +     S  +    P ++ + AVF+CVRV++VE G  
Sbjct: 241 PRGESVPKRHRENLPATSSSLVCTRIPSHSGLEVGNFPAEVSSSAVFRCVRVSSVEDGE- 300

Query: 294 GNEYAYQAVVKIGGHIFKGYLYDHGVEAARDG---FPTLSNLHLGDGGLASSPVINPADV 353
             E+AYQ  V IGGHIFKG LYD G  ++  G            G GG     +I    V
Sbjct: 301 -EEFAYQTAVSIGGHIFKGILYDLGPGSSGGGGYNVVAAGESSSGGGGAQQLNLITAGSV 338

Query: 354 ----YGSSTARGGGMAGGS 363
                 SST   GG+   S
Sbjct: 361 TVATASSSTPNLGGIGSSS 338

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BLAST of Lsi06G005760 vs. ExPASy Swiss-Prot
Match: Q9LQZ5 (Protein SHI RELATED SEQUENCE 5 OS=Arabidopsis thaliana OX=3702 GN=SRS5 PE=1 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 2.9e-29
Identity = 79/181 (43.65%), Postives = 106/181 (58.56%), Query Frame = 0


Query: 144 GGGSSLNSGAGTCHDCGNQAKKDCSHRRCRSCCKSRGFDCSTHVKSTWVPAARRRERQML 203
           GG +    G   C DCGNQAKKDC H RCR+CCKSRGF C THVKSTWVPAA+RRER   
Sbjct: 113 GGFTVTRQGGMNCQDCGNQAKKDCPHMRCRTCCKSRGFHCQTHVKSTWVPAAKRRER--- 172

Query: 204 GAASEAAAACGGGTSSGSTSGGKKPRLIASQTTTNSH-------TSTSNTPTPSFDASSA 263
              ++ A+      SS  T   K+ R  +     +         ++ +NT   + +++S 
Sbjct: 173 --LAQLASLQHHSASSRETQNAKRLREASGGDNNDDKDHSGGGGSALANTRVVNANSNSG 232

Query: 264 ADMSCKKAKKLPEQIRAPAVFKCVRVTAVEGGSGGNEYAYQAVVKIGGHIFKGYLYDHGV 318
            ++S    + LP ++ +PA+F+CVRV+++E       YAYQ  V IGGHIFKG LYD G 
Sbjct: 233 LEVS----QHLPPEVNSPAIFRCVRVSSIEEDEDDQAYAYQTAVNIGGHIFKGILYDQGP 284

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BLAST of Lsi06G005760 vs. ExPASy Swiss-Prot
Match: Q9XGX0 (Protein SHORT INTERNODES OS=Arabidopsis thaliana OX=3702 GN=SHI PE=1 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 5.9e-27
Identity = 91/259 (35.14%), Postives = 131/259 (50.58%), Query Frame = 0


Query: 114 EEANLMISRGGDGGGGVQFNGNNLDGFGILGGGSSLNSGAGTCHDCGNQAKKDCSHRRCR 173
           +  +L  S  G G G    +     G  ++   S   SG  +C DCGNQ+KKDCSH RCR
Sbjct: 78  QRLDLYTSAAGLGVGPSNRSLIETSGGALMMMRSGSGSGGPSCQDCGNQSKKDCSHMRCR 137

Query: 174 SCCKSRGFDCSTHVKSTWVPAARRRERQMLGAASEAAAACGGGTSSGSTSGGKKPRLIAS 233
           +CCKSRG DC THVKSTWVPAA+RRERQ   +  +     GG          ++   I +
Sbjct: 138 TCCKSRGLDCPTHVKSTWVPAAKRRERQQQLSTGQQPQQLGGSVPK------RQRERIPA 197

Query: 234 QTTTNSHTSTSNTPTPSFDASSAADMSCKKAKKLPEQIRAPAVFKCVRVTAVEGGSGGNE 293
           ++T+ ++T   +  T   +  +            P ++ + AVF+CVRV++V+      E
Sbjct: 198 RSTSMAYTRIPSNNTSGLEVGN-----------FPPEVSSSAVFRCVRVSSVDDEE--EE 257

Query: 294 YAYQAVVKIGGHIFKGYLYDHGV---EAARDGFPTLSNLHLGDGGLASSPVINPADVYGS 353
           YAY+  V IGGH+FKG LYD G     ++  G   L+ +  G    +SSP ++  +    
Sbjct: 258 YAYKTAVSIGGHVFKGVLYDQGPAERSSSGGGSQPLNLITAGPSASSSSPNVSCNNGVVG 317

Query: 354 STARGGGMAGGSGYGNPIN 370
           ST+          Y  PIN
Sbjct: 318 STSDHYIDPASLNYPTPIN 317

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BLAST of Lsi06G005760 vs. ExPASy TrEMBL
Match: A0A5A7UJ85 (Protein LATERAL ROOT PRIMORDIUM 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold225G00230 PE=3 SV=1)

HSP 1 Score: 611.3 bits (1575), Expect = 2.7e-171
Identity = 323/365 (88.49%), Postives = 336/365 (92.05%), Query Frame = 0


Query: 10  FFFFFAGDSPAVAAARRLPSDSGAFADWVAPPSAIVADELSLGFNSTATVPPARMWPSSR 69
           F F  A DSPAVAAARRLPSDSGAFADWVAPPSAIVADELSLGFNS +++P  RMWPSSR
Sbjct: 8   FLFLSARDSPAVAAARRLPSDSGAFADWVAPPSAIVADELSLGFNSASSIPSPRMWPSSR 67

Query: 70  PLAVGYGHTAAQAPDMVGLMASGFGVGVSVLPLLTGLAPSSVEIEEANLMISRGG---DG 129
           PL +GY HT A  PDMVGLMASGFGVGVSVLPLLTGLAPSSV IEEANLMISRGG   +G
Sbjct: 68  PLTIGYNHTPAPTPDMVGLMASGFGVGVSVLPLLTGLAPSSVGIEEANLMISRGGGGDEG 127

Query: 130 GGGVQFNGNNLDGFGILGGGSSLNSGAGTCHDCGNQAKKDCSHRRCRSCCKSRGFDCSTH 189
           GGG+QFNGNNLDGFGILGGGSSLNSG GTCHDCGNQAKKDCSHRRCRSCCKSRGFDCSTH
Sbjct: 128 GGGIQFNGNNLDGFGILGGGSSLNSGVGTCHDCGNQAKKDCSHRRCRSCCKSRGFDCSTH 187

Query: 190 VKSTWVPAARRRERQMLGAASEAAAACGGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNT 249
           VKSTWVPAARRRERQM+GAAS+AAA   GGTSSGSTSGGKKPRLIASQTTTNSHTSTSNT
Sbjct: 188 VKSTWVPAARRRERQMMGAASDAAA---GGTSSGSTSGGKKPRLIASQTTTNSHTSTSNT 247

Query: 250 PTPSFDASSAADMSCKKAKKLPEQIRAPAVFKCVRVTAVEGGS--GGNEYAYQAVVKIGG 309
           PTPSFDASSAADMS KKAKKLPEQIRAPAVFKCVRVTAVEGGS  GGNEYAYQAVVKIGG
Sbjct: 248 PTPSFDASSAADMSSKKAKKLPEQIRAPAVFKCVRVTAVEGGSSGGGNEYAYQAVVKIGG 307

Query: 310 HIFKGYLYDHGVEAARDGFPTLSNLHLGDGGLASSPVINPADVYGSSTARGGGMAGGSGY 369
           H+FKGYLYDHGVE ARDGFPT+SNLHLGDGG  SSPVI+P+DVYGSS  RGGG+AGGSGY
Sbjct: 308 HVFKGYLYDHGVE-ARDGFPTMSNLHLGDGGSTSSPVIDPSDVYGSSATRGGGLAGGSGY 367

[Close]

BLAST of Lsi06G005760 vs. ExPASy TrEMBL
Match: A0A1S3BQ17 (protein LATERAL ROOT PRIMORDIUM 1 OS=Cucumis melo OX=3656 GN=LOC103491981 PE=3 SV=1)

HSP 1 Score: 528.1 bits (1359), Expect = 3.0e-146
Identity = 279/311 (89.71%), Postives = 289/311 (92.93%), Query Frame = 0


Query: 64  MWPSSRPLAVGYGHTAAQAPDMVGLMASGFGVGVSVLPLLTGLAPSSVEIEEANLMISRG 123
           MWPSSRPL +GY HT A  PDMVGLMASGFGVGVSVLPLLTGLAPSSV IEEANLMISRG
Sbjct: 1   MWPSSRPLTIGYNHTPAPTPDMVGLMASGFGVGVSVLPLLTGLAPSSVGIEEANLMISRG 60

Query: 124 G---DGGGGVQFNGNNLDGFGILGGGSSLNSGAGTCHDCGNQAKKDCSHRRCRSCCKSRG 183
           G   +GGGG+QFNGNNLDGFGILGGGSSLNSG GTCHDCGNQAKKDCSHRRCRSCCKSRG
Sbjct: 61  GGGDEGGGGIQFNGNNLDGFGILGGGSSLNSGVGTCHDCGNQAKKDCSHRRCRSCCKSRG 120

Query: 184 FDCSTHVKSTWVPAARRRERQMLGAASEAAAACGGGTSSGSTSGGKKPRLIASQTTTNSH 243
           FDCSTHVKSTWVPAARRRERQM+GAAS+AAA   GGTSSGSTSGGKKPRLIASQTTTNSH
Sbjct: 121 FDCSTHVKSTWVPAARRRERQMMGAASDAAA---GGTSSGSTSGGKKPRLIASQTTTNSH 180

Query: 244 TSTSNTPTPSFDASSAADMSCKKAKKLPEQIRAPAVFKCVRVTAVEGGS--GGNEYAYQA 303
           TSTSNTPTPSFDASSAADMS KKAKKLPEQIRAPAVFKCVRVTAVEGGS  GGNEYAYQA
Sbjct: 181 TSTSNTPTPSFDASSAADMSSKKAKKLPEQIRAPAVFKCVRVTAVEGGSSGGGNEYAYQA 240

Query: 304 VVKIGGHIFKGYLYDHGVEAARDGFPTLSNLHLGDGGLASSPVINPADVYGSSTARGGGM 363
           VVKIGGH+FKGYLYDHGVE ARDGFPT+SNLHLGDGG  SSPVI+P+DVYGSS  RGGG+
Sbjct: 241 VVKIGGHVFKGYLYDHGVE-ARDGFPTMSNLHLGDGGSTSSPVIDPSDVYGSSATRGGGL 300

Query: 364 AGGSGYGNPIN 370
           AGGSGYGN IN
Sbjct: 301 AGGSGYGNSIN 307

[Close]

BLAST of Lsi06G005760 vs. ExPASy TrEMBL
Match: A0A0A0M099 (Transcription factor OS=Cucumis sativus OX=3659 GN=Csa_1G628000 PE=3 SV=1)

HSP 1 Score: 527.7 bits (1358), Expect = 3.9e-146
Identity = 279/311 (89.71%), Postives = 289/311 (92.93%), Query Frame = 0


Query: 64  MWPSSRPLAVGYGHTAAQAPDMVGLMASGFGVGVSVLPLLTGLAPSSVEIEEANLMISRG 123
           MWPSSRPL +GY HT A  PDMVGLMASGFGVGVSVLPLL+GLAPSSV IEEANLMISRG
Sbjct: 1   MWPSSRPLTIGYNHTPAPTPDMVGLMASGFGVGVSVLPLLSGLAPSSVGIEEANLMISRG 60

Query: 124 G---DGGGGVQFNGNNLDGFGILGGGSSLNSGAGTCHDCGNQAKKDCSHRRCRSCCKSRG 183
           G   DGGGG+QFNGNNLDGFGILGGGSSLNSG GTCHDCGNQAKKDCSHRRCRSCCKSRG
Sbjct: 61  GGGDDGGGGIQFNGNNLDGFGILGGGSSLNSGVGTCHDCGNQAKKDCSHRRCRSCCKSRG 120

Query: 184 FDCSTHVKSTWVPAARRRERQMLGAASEAAAACGGGTSSGSTSGGKKPRLIASQTTTNSH 243
           FDCSTHVKSTWVPAARRRERQM+GAAS+AAA   GGTSSGSTSGGKKPRLIASQTTTNSH
Sbjct: 121 FDCSTHVKSTWVPAARRRERQMMGAASDAAA---GGTSSGSTSGGKKPRLIASQTTTNSH 180

Query: 244 TSTSNTPTPSFDASSAADMSCKKAKKLPEQIRAPAVFKCVRVTAVEGGS--GGNEYAYQA 303
           TSTSNTPTPSFDASSAADMS KKAKKLPEQIRAPAVFKCVRVTAVEGG+  GGNEYAYQA
Sbjct: 181 TSTSNTPTPSFDASSAADMSSKKAKKLPEQIRAPAVFKCVRVTAVEGGTSGGGNEYAYQA 240

Query: 304 VVKIGGHIFKGYLYDHGVEAARDGFPTLSNLHLGDGGLASSPVINPADVYGSSTARGGGM 363
           VVKIGGH+FKGYLYDHGVE ARDGFP +SNLHLGDGG  SSPVI+PADVYGSST RGGG+
Sbjct: 241 VVKIGGHVFKGYLYDHGVE-ARDGFPMMSNLHLGDGGSTSSPVIDPADVYGSSTTRGGGL 300

Query: 364 AGGSGYGNPIN 370
           AGGSGYGN IN
Sbjct: 301 AGGSGYGNSIN 307

[Close]

BLAST of Lsi06G005760 vs. ExPASy TrEMBL
Match: A0A6J1ID91 (protein LATERAL ROOT PRIMORDIUM 1-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111472747 PE=3 SV=1)

HSP 1 Score: 483.0 bits (1242), Expect = 1.1e-132
Identity = 262/318 (82.39%), Postives = 279/318 (87.74%), Query Frame = 0


Query: 64  MWP---SSRPLAVGYGHTAAQAPDMVGLMASGFGVGVSVLPLLTGLAPSSVEIEEANLMI 123
           MWP   SSRP+A  YGHTA    DMVGLMASG+GVG+SVLPLLTG+APSSV IEE NLMI
Sbjct: 1   MWPSSSSSRPIAGAYGHTAPPPTDMVGLMASGYGVGLSVLPLLTGIAPSSVGIEETNLMI 60

Query: 124 SR-----GGDGGGGVQFNGNNLDGFGILGGGSSLNSGAGTCHDCGNQAKKDCSHRRCRSC 183
           SR     GG GGGGVQF+GNN DGFG LGGGSSLNSG GTCHDCGNQAKKDC+HRRCRSC
Sbjct: 61  SRGGGGDGGGGGGGVQFHGNNFDGFGFLGGGSSLNSGVGTCHDCGNQAKKDCNHRRCRSC 120

Query: 184 CKSRGFDCSTHVKSTWVPAARRRERQMLGAASEAAAACGGGTSSGSTSGGKKPRLIASQT 243
           CKSRGFDC+THVKSTWVPAARRRERQ+L AA  AAAA  GGTSSGSTSGGKKPRLIASQT
Sbjct: 121 CKSRGFDCATHVKSTWVPAARRRERQVLSAA--AAAAATGGTSSGSTSGGKKPRLIASQT 180

Query: 244 TTNSHTSTSNTPTPSFDASSAADMSCKKAKKLPEQIRAPAVFKCVRVTAVE-GGSGGNEY 303
           TTNSHTSTSNTPT SFD  SAADMS K+AKKLPEQ+RAPAVFKCVRVTAVE GGSGGNEY
Sbjct: 181 TTNSHTSTSNTPTRSFDTCSAADMSYKRAKKLPEQVRAPAVFKCVRVTAVEGGGSGGNEY 240

Query: 304 AYQAVVKIGGHIFKGYLYDHGVEAARDGFPTLSNLHL---GDGGLASSPVINPADVYGSS 363
           AYQAVVKIGGH+FKGYLYDHGVE AR+GFP LS+LHL   GDGG  SSP+I+P+DVYGSS
Sbjct: 241 AYQAVVKIGGHVFKGYLYDHGVE-AREGFPMLSDLHLGGGGDGGSTSSPIIDPSDVYGSS 300

Query: 364 TARGGGMAGGSGYGNPIN 370
             RGGG+AGGSGYGNPIN
Sbjct: 301 AGRGGGLAGGSGYGNPIN 315

[Close]

BLAST of Lsi06G005760 vs. ExPASy TrEMBL
Match: A0A6J1F4X3 (protein LATERAL ROOT PRIMORDIUM 1-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111440862 PE=3 SV=1)

HSP 1 Score: 482.6 bits (1241), Expect = 1.4e-132
Identity = 261/316 (82.59%), Postives = 279/316 (88.29%), Query Frame = 0


Query: 64  MWP---SSRPLAVGYGHTAAQAPDMVGLMASGFGVGVSVLPLLTGLAPSSVEIEEANLMI 123
           MWP   S+RP+A  YGHTA    DMVGLMASG+GVG+SVLPLLTGLAPSSV IEE NLMI
Sbjct: 1   MWPSTSSTRPIAGAYGHTAPPPTDMVGLMASGYGVGLSVLPLLTGLAPSSVGIEETNLMI 60

Query: 124 SRGGD---GGGGVQFNGNNLDGFGILGGGSSLNSGAGTCHDCGNQAKKDCSHRRCRSCCK 183
           SRGGD   GGGGVQF+GNN DGFG LGGGSSLNSG GTCHDCGNQAKKDC+HRRCRSCCK
Sbjct: 61  SRGGDGGGGGGGVQFHGNNFDGFGFLGGGSSLNSGVGTCHDCGNQAKKDCNHRRCRSCCK 120

Query: 184 SRGFDCSTHVKSTWVPAARRRERQMLGAASEAAAACGGGTSSGSTSGGKKPRLIASQTTT 243
           SRGFDC+THVKSTWVPAARRRERQ+L AA  AAAA  GGTSSGSTSGGKKPRLIASQTTT
Sbjct: 121 SRGFDCATHVKSTWVPAARRRERQVLSAA--AAAAATGGTSSGSTSGGKKPRLIASQTTT 180

Query: 244 NSHTSTSNTPTPSFDASSAADMSCKKAKKLPEQIRAPAVFKCVRVTAVE-GGSGGNEYAY 303
           NSHTSTSNTPT SFD  SAADMS K+AKKLPEQ+RAPAVFKCVRVTAVE GG+GGNEYAY
Sbjct: 181 NSHTSTSNTPTRSFDTCSAADMSYKRAKKLPEQVRAPAVFKCVRVTAVEGGGTGGNEYAY 240

Query: 304 QAVVKIGGHIFKGYLYDHGVEAARDGFPTLSNLHL---GDGGLASSPVINPADVYGSSTA 363
           QAVVKIGGH+FKGYLYDHGVE AR+GFP LS+LHL   GDGG  SSP+I+P+DVYGSS  
Sbjct: 241 QAVVKIGGHVFKGYLYDHGVE-AREGFPMLSDLHLGGGGDGGSTSSPIIDPSDVYGSSAG 300

Query: 364 RGGGMAGGSGYGNPIN 370
           RGGG+AG SGYGNPIN
Sbjct: 301 RGGGLAGSSGYGNPIN 313

[Close]

BLAST of Lsi06G005760 vs. NCBI nr
Match: KAA0056003.1 (protein LATERAL ROOT PRIMORDIUM 1 [Cucumis melo var. makuwa] >TYK27692.1 protein LATERAL ROOT PRIMORDIUM 1 [Cucumis melo var. makuwa])

HSP 1 Score: 611.3 bits (1575), Expect = 5.5e-171
Identity = 323/365 (88.49%), Postives = 336/365 (92.05%), Query Frame = 0


Query: 10  FFFFFAGDSPAVAAARRLPSDSGAFADWVAPPSAIVADELSLGFNSTATVPPARMWPSSR 69
           F F  A DSPAVAAARRLPSDSGAFADWVAPPSAIVADELSLGFNS +++P  RMWPSSR
Sbjct: 8   FLFLSARDSPAVAAARRLPSDSGAFADWVAPPSAIVADELSLGFNSASSIPSPRMWPSSR 67

Query: 70  PLAVGYGHTAAQAPDMVGLMASGFGVGVSVLPLLTGLAPSSVEIEEANLMISRGG---DG 129
           PL +GY HT A  PDMVGLMASGFGVGVSVLPLLTGLAPSSV IEEANLMISRGG   +G
Sbjct: 68  PLTIGYNHTPAPTPDMVGLMASGFGVGVSVLPLLTGLAPSSVGIEEANLMISRGGGGDEG 127

Query: 130 GGGVQFNGNNLDGFGILGGGSSLNSGAGTCHDCGNQAKKDCSHRRCRSCCKSRGFDCSTH 189
           GGG+QFNGNNLDGFGILGGGSSLNSG GTCHDCGNQAKKDCSHRRCRSCCKSRGFDCSTH
Sbjct: 128 GGGIQFNGNNLDGFGILGGGSSLNSGVGTCHDCGNQAKKDCSHRRCRSCCKSRGFDCSTH 187

Query: 190 VKSTWVPAARRRERQMLGAASEAAAACGGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNT 249
           VKSTWVPAARRRERQM+GAAS+AAA   GGTSSGSTSGGKKPRLIASQTTTNSHTSTSNT
Sbjct: 188 VKSTWVPAARRRERQMMGAASDAAA---GGTSSGSTSGGKKPRLIASQTTTNSHTSTSNT 247

Query: 250 PTPSFDASSAADMSCKKAKKLPEQIRAPAVFKCVRVTAVEGGS--GGNEYAYQAVVKIGG 309
           PTPSFDASSAADMS KKAKKLPEQIRAPAVFKCVRVTAVEGGS  GGNEYAYQAVVKIGG
Sbjct: 248 PTPSFDASSAADMSSKKAKKLPEQIRAPAVFKCVRVTAVEGGSSGGGNEYAYQAVVKIGG 307

Query: 310 HIFKGYLYDHGVEAARDGFPTLSNLHLGDGGLASSPVINPADVYGSSTARGGGMAGGSGY 369
           H+FKGYLYDHGVE ARDGFPT+SNLHLGDGG  SSPVI+P+DVYGSS  RGGG+AGGSGY
Sbjct: 308 HVFKGYLYDHGVE-ARDGFPTMSNLHLGDGGSTSSPVIDPSDVYGSSATRGGGLAGGSGY 367

[Close]

BLAST of Lsi06G005760 vs. NCBI nr
Match: KAG6588219.1 (Protein LATERAL ROOT PRIMORDIUM 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 547.7 bits (1410), Expect = 7.5e-152
Identity = 299/363 (82.37%), Postives = 318/363 (87.60%), Query Frame = 0


Query: 20  AVAAARRLPSDSGAFADWVAPPSAIVADELSLGFNSTATVPPARMWPSS---RPLAVGYG 79
           +VAAARRLPSDSGAFADWVAPP+A   DELSLGFNS A VP ARMWPSS   RP+A  YG
Sbjct: 12  SVAAARRLPSDSGAFADWVAPPTA--DDELSLGFNSAAAVPVARMWPSSSSTRPIAGAYG 71

Query: 80  HTAAQAPDMVGLMASGFGVGVSVLPLLTGLAPSSVEIEEANLMISR------GGDGGGGV 139
           HTA    DMVGLMASG+GVG+SVLPLLTGLAPSSV IEE NLMISR      GG GGGGV
Sbjct: 72  HTAPPPTDMVGLMASGYGVGLSVLPLLTGLAPSSVGIEETNLMISRGGGGGDGGGGGGGV 131

Query: 140 QFNGNNLDGFGILGGGSSLNSGAGTCHDCGNQAKKDCSHRRCRSCCKSRGFDCSTHVKST 199
           QF+GNN DGFG LGGGSSLNSG GTCHDCGNQAKKDC+HRRCRSCCKSRGFDC+THVKST
Sbjct: 132 QFHGNNFDGFGFLGGGSSLNSGVGTCHDCGNQAKKDCNHRRCRSCCKSRGFDCATHVKST 191

Query: 200 WVPAARRRERQMLGAASEAAAACGGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTPS 259
           WVPAARRRERQ+L AA+ AAAA  GGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPT S
Sbjct: 192 WVPAARRRERQVLSAAA-AAAAATGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTRS 251

Query: 260 FDASSAADMSCKKAKKLPEQIRAPAVFKCVRVTAVE-GGSGGNEYAYQAVVKIGGHIFKG 319
           FD  SAADMS K+AKKLPEQ+RAPAVFKCVRVTAVE GGSGGNEYAYQAVVKIGGH+FKG
Sbjct: 252 FDTCSAADMSYKRAKKLPEQVRAPAVFKCVRVTAVEGGGSGGNEYAYQAVVKIGGHVFKG 311

Query: 320 YLYDHGVEAARDGFPTLSNLHL---GDGGLASSPVINPADVYGSSTARGGGMAGGSGYGN 370
           YLYDHGVE AR+GFP LS+LHL   GDGG  SSP+I+P+DVYGSS  RGGG+AGGSGYGN
Sbjct: 312 YLYDHGVE-AREGFPMLSDLHLGGGGDGGSTSSPIIDPSDVYGSSAGRGGGLAGGSGYGN 370

[Close]

BLAST of Lsi06G005760 vs. NCBI nr
Match: XP_038878596.1 (protein LATERAL ROOT PRIMORDIUM 1 [Benincasa hispida])

HSP 1 Score: 535.8 bits (1379), Expect = 2.9e-148
Identity = 286/312 (91.67%), Postives = 291/312 (93.27%), Query Frame = 0


Query: 64  MWPSSRPLAVGYGHTAAQAPDMVGLMASGFGVGVSVLPLLTGLAPSSVEIEEANLMISR- 123
           MWPSSRPLA+GYGHTAA   DMVGLMASGFGVGVSVLPLLTGLAPSSV IEEANLMISR 
Sbjct: 1   MWPSSRPLAIGYGHTAAPPTDMVGLMASGFGVGVSVLPLLTGLAPSSVGIEEANLMISRG 60

Query: 124 ---GGDGGGGVQFNGNNLDGFGILGGGSSLNSGAGTCHDCGNQAKKDCSHRRCRSCCKSR 183
              GG GGGGVQFNGNNLDGFGILGGGSSLNSGAGTCHDCGNQAKKDCSHRRCRSCCKSR
Sbjct: 61  GGDGGGGGGGVQFNGNNLDGFGILGGGSSLNSGAGTCHDCGNQAKKDCSHRRCRSCCKSR 120

Query: 184 GFDCSTHVKSTWVPAARRRERQMLGAASEAAAACGGGTSSGSTSGGKKPRLIASQTTTNS 243
           GFDCSTHVKSTWVPAARRRERQML AAS+ AA   GGTSSGSTSGGKKPRLIASQTTTNS
Sbjct: 121 GFDCSTHVKSTWVPAARRRERQMLSAASDVAA---GGTSSGSTSGGKKPRLIASQTTTNS 180

Query: 244 HTSTSNTPTPSFDASSAADMSCKKAKKLPEQIRAPAVFKCVRVTAVEGGS--GGNEYAYQ 303
           HTSTSNTPTPSFDASSAADMSCKKAKKLPEQIRAPAVFKCVRVTAVEGGS  GGNEYAYQ
Sbjct: 181 HTSTSNTPTPSFDASSAADMSCKKAKKLPEQIRAPAVFKCVRVTAVEGGSSGGGNEYAYQ 240

Query: 304 AVVKIGGHIFKGYLYDHGVEAARDGFPTLSNLHLGDGGLASSPVINPADVYGSSTARGGG 363
           A+VKIGGHIFKGYLYDHGVE ARDGFPTLSNLHLGDGG  SSPVI+PADVYGSS ARGG 
Sbjct: 241 AIVKIGGHIFKGYLYDHGVE-ARDGFPTLSNLHLGDGGSTSSPVIDPADVYGSSAARGGA 300

Query: 364 MAGGSGYGNPIN 370
           +AGGSGYGNPIN
Sbjct: 301 LAGGSGYGNPIN 308

[Close]

BLAST of Lsi06G005760 vs. NCBI nr
Match: XP_008450344.1 (PREDICTED: protein LATERAL ROOT PRIMORDIUM 1 [Cucumis melo])

HSP 1 Score: 528.1 bits (1359), Expect = 6.1e-146
Identity = 279/311 (89.71%), Postives = 289/311 (92.93%), Query Frame = 0


Query: 64  MWPSSRPLAVGYGHTAAQAPDMVGLMASGFGVGVSVLPLLTGLAPSSVEIEEANLMISRG 123
           MWPSSRPL +GY HT A  PDMVGLMASGFGVGVSVLPLLTGLAPSSV IEEANLMISRG
Sbjct: 1   MWPSSRPLTIGYNHTPAPTPDMVGLMASGFGVGVSVLPLLTGLAPSSVGIEEANLMISRG 60

Query: 124 G---DGGGGVQFNGNNLDGFGILGGGSSLNSGAGTCHDCGNQAKKDCSHRRCRSCCKSRG 183
           G   +GGGG+QFNGNNLDGFGILGGGSSLNSG GTCHDCGNQAKKDCSHRRCRSCCKSRG
Sbjct: 61  GGGDEGGGGIQFNGNNLDGFGILGGGSSLNSGVGTCHDCGNQAKKDCSHRRCRSCCKSRG 120

Query: 184 FDCSTHVKSTWVPAARRRERQMLGAASEAAAACGGGTSSGSTSGGKKPRLIASQTTTNSH 243
           FDCSTHVKSTWVPAARRRERQM+GAAS+AAA   GGTSSGSTSGGKKPRLIASQTTTNSH
Sbjct: 121 FDCSTHVKSTWVPAARRRERQMMGAASDAAA---GGTSSGSTSGGKKPRLIASQTTTNSH 180

Query: 244 TSTSNTPTPSFDASSAADMSCKKAKKLPEQIRAPAVFKCVRVTAVEGGS--GGNEYAYQA 303
           TSTSNTPTPSFDASSAADMS KKAKKLPEQIRAPAVFKCVRVTAVEGGS  GGNEYAYQA
Sbjct: 181 TSTSNTPTPSFDASSAADMSSKKAKKLPEQIRAPAVFKCVRVTAVEGGSSGGGNEYAYQA 240

Query: 304 VVKIGGHIFKGYLYDHGVEAARDGFPTLSNLHLGDGGLASSPVINPADVYGSSTARGGGM 363
           VVKIGGH+FKGYLYDHGVE ARDGFPT+SNLHLGDGG  SSPVI+P+DVYGSS  RGGG+
Sbjct: 241 VVKIGGHVFKGYLYDHGVE-ARDGFPTMSNLHLGDGGSTSSPVIDPSDVYGSSATRGGGL 300

Query: 364 AGGSGYGNPIN 370
           AGGSGYGN IN
Sbjct: 301 AGGSGYGNSIN 307

[Close]

BLAST of Lsi06G005760 vs. NCBI nr
Match: XP_011660164.1 (protein LATERAL ROOT PRIMORDIUM 1 [Cucumis sativus] >KGN66542.1 hypothetical protein Csa_007512 [Cucumis sativus])

HSP 1 Score: 527.7 bits (1358), Expect = 8.0e-146
Identity = 279/311 (89.71%), Postives = 289/311 (92.93%), Query Frame = 0


Query: 64  MWPSSRPLAVGYGHTAAQAPDMVGLMASGFGVGVSVLPLLTGLAPSSVEIEEANLMISRG 123
           MWPSSRPL +GY HT A  PDMVGLMASGFGVGVSVLPLL+GLAPSSV IEEANLMISRG
Sbjct: 1   MWPSSRPLTIGYNHTPAPTPDMVGLMASGFGVGVSVLPLLSGLAPSSVGIEEANLMISRG 60

Query: 124 G---DGGGGVQFNGNNLDGFGILGGGSSLNSGAGTCHDCGNQAKKDCSHRRCRSCCKSRG 183
           G   DGGGG+QFNGNNLDGFGILGGGSSLNSG GTCHDCGNQAKKDCSHRRCRSCCKSRG
Sbjct: 61  GGGDDGGGGIQFNGNNLDGFGILGGGSSLNSGVGTCHDCGNQAKKDCSHRRCRSCCKSRG 120

Query: 184 FDCSTHVKSTWVPAARRRERQMLGAASEAAAACGGGTSSGSTSGGKKPRLIASQTTTNSH 243
           FDCSTHVKSTWVPAARRRERQM+GAAS+AAA   GGTSSGSTSGGKKPRLIASQTTTNSH
Sbjct: 121 FDCSTHVKSTWVPAARRRERQMMGAASDAAA---GGTSSGSTSGGKKPRLIASQTTTNSH 180

Query: 244 TSTSNTPTPSFDASSAADMSCKKAKKLPEQIRAPAVFKCVRVTAVEGGS--GGNEYAYQA 303
           TSTSNTPTPSFDASSAADMS KKAKKLPEQIRAPAVFKCVRVTAVEGG+  GGNEYAYQA
Sbjct: 181 TSTSNTPTPSFDASSAADMSSKKAKKLPEQIRAPAVFKCVRVTAVEGGTSGGGNEYAYQA 240

Query: 304 VVKIGGHIFKGYLYDHGVEAARDGFPTLSNLHLGDGGLASSPVINPADVYGSSTARGGGM 363
           VVKIGGH+FKGYLYDHGVE ARDGFP +SNLHLGDGG  SSPVI+PADVYGSST RGGG+
Sbjct: 241 VVKIGGHVFKGYLYDHGVE-ARDGFPMMSNLHLGDGGSTSSPVIDPADVYGSSTTRGGGL 300

Query: 364 AGGSGYGNPIN 370
           AGGSGYGN IN
Sbjct: 301 AGGSGYGNSIN 307

[Close]

BLAST of Lsi06G005760 vs. TAIR 10
Match: AT5G12330.4 (Lateral root primordium (LRP) protein-related )

HSP 1 Score: 227.6 bits (579), Expect = 1.6e-59
Identity = 176/417 (42.21%), Postives = 226/417 (54.20%), Query Frame = 0


Query: 14  FAGDSPAVAAARR--LP-SDSGAFADWVAPPS--AIVADELSLGFNSTATVPPARM---- 73
           + G   +VA  RR  LP SDSGAF DW A  +  +   ++LSLGFN+ ++V    +    
Sbjct: 2   YIGALCSVATTRRHNLPTSDSGAFTDWAATTTTPSRATEDLSLGFNAGSSVIHGGLGSAS 61

Query: 74  -------WPSSRPLAVGYGHTAAQAP-DMVGL---------------------------M 133
                  WP    +  G   +AA     MVGL                            
Sbjct: 62  VAAGVPSWPPGSSVRYGLPSSAAATEMGMVGLRDVFLVAPAYHHQNAGVISGSDHMNSNA 121

Query: 134 ASGFGVGVSVLPLLT-GLAPSSVEIEEANLM-------ISRGGDGGGGVQFNGNNLDGFG 193
           A+   +GV V+PLLT G    +VE  + N +        +        + F   N    G
Sbjct: 122 AAAAALGVGVIPLLTAGTPQQNVEDSDINFLGNNRRWQNNNNNHETQYLHFKSTNQTTVG 181

Query: 194 ILGGGSSLNSGA---GTCHDCGNQAKKDCSHRRCRSCCKSRGFDCSTHVKSTWVPAARRR 253
                S   SGA    TC DCGNQAKK+C  RRCR+CCKSRGFDCSTHVKSTWV AARRR
Sbjct: 182 TSSNNSGSGSGASGTATCQDCGNQAKKECKQRRCRTCCKSRGFDCSTHVKSTWVSAARRR 241

Query: 254 ERQMLGAASEAAAACGGGTSSGSTSGGKKPRLIAS----QTTTNSHTSTSNTPTPSFDAS 313
           ERQ++   +   A    G+S  ++SG KKPR++ S    Q    SHTSTSNTP  SF+ S
Sbjct: 242 ERQVMPTGANPTA----GSSLSTSSGTKKPRIVGSQQQQQQQATSHTSTSNTPPQSFETS 301

Query: 314 SAADMSCKKAKKLPEQIRAPAVFKCVRVTAVEGGSGGNEYAYQAVVKIGGHIFKGYLYDH 365
           S+        +  P Q+RA AVFKCVRVTAVE   G +EYAYQAVVKIGGH+FKG+LYD 
Sbjct: 302 SSRQDGGGSREAWPGQVRAAAVFKCVRVTAVE--DGDDEYAYQAVVKIGGHVFKGFLYDQ 361

[Close]

BLAST of Lsi06G005760 vs. TAIR 10
Match: AT5G12330.2 (Lateral root primordium (LRP) protein-related )

HSP 1 Score: 213.0 bits (541), Expect = 4.1e-55
Identity = 144/297 (48.48%), Postives = 182/297 (61.28%), Query Frame = 0


Query: 90  ASGFGVGVSVLPLLT-GLAPSSVEIEEANLM-------ISRGGDGGGGVQFNGNNLDGFG 149
           A+   +GV V+PLLT G    +VE  + N +        +        + F   N    G
Sbjct: 35  AAAAALGVGVIPLLTAGTPQQNVEDSDINFLGNNRRWQNNNNNHETQYLHFKSTNQTTVG 94

Query: 150 ILGGGSSLNSGA---GTCHDCGNQAKKDCSHRRCRSCCKSRGFDCSTHVKSTWVPAARRR 209
                S   SGA    TC DCGNQAKK+C  RRCR+CCKSRGFDCSTHVKSTWV AARRR
Sbjct: 95  TSSNNSGSGSGASGTATCQDCGNQAKKECKQRRCRTCCKSRGFDCSTHVKSTWVSAARRR 154

Query: 210 ERQMLGAASEAAAACGGGTSSGSTSGGKKPRLIAS----QTTTNSHTSTSNTPTPSFDAS 269
           ERQ++   +   A    G+S  ++SG KKPR++ S    Q    SHTSTSNTP  SF+ S
Sbjct: 155 ERQVMPTGANPTA----GSSLSTSSGTKKPRIVGSQQQQQQQATSHTSTSNTPPQSFETS 214

Query: 270 SAADMSCKKAKKLPEQIRAPAVFKCVRVTAVEGGSGGNEYAYQAVVKIGGHIFKGYLYDH 329
           S+        +  P Q+RA AVFKCVRVTAVE   G +EYAYQAVVKIGGH+FKG+LYD 
Sbjct: 215 SSRQDGGGSREAWPGQVRAAAVFKCVRVTAVE--DGDDEYAYQAVVKIGGHVFKGFLYDQ 274

Query: 330 GVEAARDGFPTLSNLHLG------DGGLASSPVINPAD-VYGSSTARGGGMAGGSGY 365
           G+E  ++GFP++S+LHLG      +G  AS+P+++P + VYG     GGG +GG  Y
Sbjct: 275 GLE-PKEGFPSMSDLHLGGSANNHNGVSASAPILDPPNVVYG-----GGGGSGGGFY 319

[Close]

BLAST of Lsi06G005760 vs. TAIR 10
Match: AT5G12330.1 (Lateral root primordium (LRP) protein-related )

HSP 1 Score: 213.0 bits (541), Expect = 4.1e-55
Identity = 144/297 (48.48%), Postives = 182/297 (61.28%), Query Frame = 0


Query: 90  ASGFGVGVSVLPLLT-GLAPSSVEIEEANLM-------ISRGGDGGGGVQFNGNNLDGFG 149
           A+   +GV V+PLLT G    +VE  + N +        +        + F   N    G
Sbjct: 35  AAAAALGVGVIPLLTAGTPQQNVEDSDINFLGNNRRWQNNNNNHETQYLHFKSTNQTTVG 94

Query: 150 ILGGGSSLNSGA---GTCHDCGNQAKKDCSHRRCRSCCKSRGFDCSTHVKSTWVPAARRR 209
                S   SGA    TC DCGNQAKK+C  RRCR+CCKSRGFDCSTHVKSTWV AARRR
Sbjct: 95  TSSNNSGSGSGASGTATCQDCGNQAKKECKQRRCRTCCKSRGFDCSTHVKSTWVSAARRR 154

Query: 210 ERQMLGAASEAAAACGGGTSSGSTSGGKKPRLIAS----QTTTNSHTSTSNTPTPSFDAS 269
           ERQ++   +   A    G+S  ++SG KKPR++ S    Q    SHTSTSNTP  SF+ S
Sbjct: 155 ERQVMPTGANPTA----GSSLSTSSGTKKPRIVGSQQQQQQQATSHTSTSNTPPQSFETS 214

Query: 270 SAADMSCKKAKKLPEQIRAPAVFKCVRVTAVEGGSGGNEYAYQAVVKIGGHIFKGYLYDH 329
           S+        +  P Q+RA AVFKCVRVTAVE   G +EYAYQAVVKIGGH+FKG+LYD 
Sbjct: 215 SSRQDGGGSREAWPGQVRAAAVFKCVRVTAVE--DGDDEYAYQAVVKIGGHVFKGFLYDQ 274

Query: 330 GVEAARDGFPTLSNLHLG------DGGLASSPVINPAD-VYGSSTARGGGMAGGSGY 365
           G+E  ++GFP++S+LHLG      +G  AS+P+++P + VYG     GGG +GG  Y
Sbjct: 275 GLE-PKEGFPSMSDLHLGGSANNHNGVSASAPILDPPNVVYG-----GGGGSGGGFY 319

[Close]

BLAST of Lsi06G005760 vs. TAIR 10
Match: AT4G36260.1 (Lateral root primordium (LRP) protein-related )

HSP 1 Score: 135.2 bits (339), Expect = 1.1e-31
Identity = 94/215 (43.72%), Postives = 120/215 (55.81%), Query Frame = 0


Query: 155 TCHDCGNQAKKDCSHRRCRSCCKSRGFDCSTHVKSTWVPAARRRERQMLGAASEAAAACG 214
           +C DCGNQAKKDC+H RCR+CCKSRGFDCSTHV+STW+P ARRRERQ     S +    G
Sbjct: 93  SCRDCGNQAKKDCTHMRCRTCCKSRGFDCSTHVRSTWIPVARRRERQQQLHMSTSGG--G 152

Query: 215 GGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTPSFDASSAADMSCKKAKKLPEQIRAP 274
           GG+ SG   GG        +  T   TS+S+   PS   S+  +M        P ++ + 
Sbjct: 153 GGSGSGGAGGGGSSIPKRHRDPTLPGTSSSSR-LPSH--SAGLEMG---EASFPGEVSSD 212

Query: 275 AVFKCVRVTAVEGGSGGNEYAYQAVVKIGGHIFKGYLYDHGVEAARDGFPTLSNLHLGDG 334
           A+F+CV+++ V+ G G  +YAYQ  V IGGH+FKG LYD G        P  S +  G G
Sbjct: 213 ALFRCVKMSGVDDG-GDGQYAYQTTVNIGGHLFKGILYDQG--------PESSYMSGGSG 272

Query: 335 GLASSPVINPADVYGSSTARGGGMAGGSGYGNPIN 370
           G         +D   SS       AGG G G+P N
Sbjct: 273 G---------SDHQSSS-------AGGGGGGHPFN 274

[Close]

BLAST of Lsi06G005760 vs. TAIR 10
Match: AT3G51060.1 (Lateral root primordium (LRP) protein-related )

HSP 1 Score: 131.3 bits (329), Expect = 1.6e-30
Identity = 106/319 (33.23%), Postives = 142/319 (44.51%), Query Frame = 0


Query: 54  NSTATVPPARMWPSSRPLAVGYGHTAAQAPDMVGLMASGFGVGVS---VLPLLTGLAPSS 113
           +S A +    +W +     + + H   Q    +   A+G GVG S      +    + + 
Sbjct: 61  SSNAALGTLELWQNHNQQEIMFQHQQHQQRLDLYSSAAGLGVGPSNHNQFDISGETSTAG 120

Query: 114 VEIEEANLMISRGGDGGGGVQFNGNNLDGFGILGGGSSLNSGAGTCHDCGNQAKKDCSHR 173
                A +MI  GG GGG                      SG  +C DCGNQAKKDCSH 
Sbjct: 121 AGRAAAMMMIRSGGSGGG----------------------SGGVSCQDCGNQAKKDCSHM 180

Query: 174 RCRSCCKSRGFDCSTHVKSTWVPAARRRERQMLGAASEAAAACGGGTSSGSTSGGKKPRL 233
           RCR+CCKSRGF+CSTHV+STWVPAA+RRERQ   A  +                  + +L
Sbjct: 181 RCRTCCKSRGFECSTHVRSTWVPAAKRRERQQQLATVQ-----------------PQTQL 240

Query: 234 IASQTTTNSHTSTSNTPTPSFDASSAADMSCKKAKKLPEQIRAPAVFKCVRVTAVEGGSG 293
              ++    H       + S   +     S  +    P ++ + AVF+CVRV++VE G  
Sbjct: 241 PRGESVPKRHRENLPATSSSLVCTRIPSHSGLEVGNFPAEVSSSAVFRCVRVSSVEDGE- 300

Query: 294 GNEYAYQAVVKIGGHIFKGYLYDHGVEAARDG---FPTLSNLHLGDGGLASSPVINPADV 353
             E+AYQ  V IGGHIFKG LYD G  ++  G            G GG     +I    V
Sbjct: 301 -EEFAYQTAVSIGGHIFKGILYDLGPGSSGGGGYNVVAAGESSSGGGGAQQLNLITAGSV 338

Query: 354 ----YGSSTARGGGMAGGS 363
                 SST   GG+   S
Sbjct: 361 TVATASSSTPNLGGIGSSS 338

The following BLAST results are available for this feature:

BLAST of Lsi06G005760 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94CK9	5.7e-54	48.48	Protein LATERAL ROOT PRIMORDIUM 1 OS=Arabidopsis thaliana OX=3702 GN=LRP1 PE=1 S...	[more]
O65517	1.5e-30	43.72	Protein SHI RELATED SEQUENCE 2 OS=Arabidopsis thaliana OX=3702 GN=SRS2 PE=1 SV=1	[more]
Q9SD40	2.2e-29	33.23	Protein SHI RELATED SEQUENCE 1 OS=Arabidopsis thaliana OX=3702 GN=SRS1 PE=1 SV=2	[more]
Q9LQZ5	2.9e-29	43.65	Protein SHI RELATED SEQUENCE 5 OS=Arabidopsis thaliana OX=3702 GN=SRS5 PE=1 SV=1	[more]
Q9XGX0	5.9e-27	35.14	Protein SHORT INTERNODES OS=Arabidopsis thaliana OX=3702 GN=SHI PE=1 SV=1	[more]

BLAST of Lsi06G005760 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UJ85	2.7e-171	88.49	Protein LATERAL ROOT PRIMORDIUM 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A1S3BQ17	3.0e-146	89.71	protein LATERAL ROOT PRIMORDIUM 1 OS=Cucumis melo OX=3656 GN=LOC103491981 PE=3 S...	[more]
A0A0A0M099	3.9e-146	89.71	Transcription factor OS=Cucumis sativus OX=3659 GN=Csa_1G628000 PE=3 SV=1	[more]
A0A6J1ID91	1.1e-132	82.39	protein LATERAL ROOT PRIMORDIUM 1-like isoform X1 OS=Cucurbita maxima OX=3661 GN...	[more]
A0A6J1F4X3	1.4e-132	82.59	protein LATERAL ROOT PRIMORDIUM 1-like isoform X1 OS=Cucurbita moschata OX=3662 ...	[more]

BLAST of Lsi06G005760 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0056003.1	5.5e-171	88.49	protein LATERAL ROOT PRIMORDIUM 1 [Cucumis melo var. makuwa] >TYK27692.1 protein...	[more]
KAG6588219.1	7.5e-152	82.37	Protein LATERAL ROOT PRIMORDIUM 1, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_038878596.1	2.9e-148	91.67	protein LATERAL ROOT PRIMORDIUM 1 [Benincasa hispida]	[more]
XP_008450344.1	6.1e-146	89.71	PREDICTED: protein LATERAL ROOT PRIMORDIUM 1 [Cucumis melo]	[more]
XP_011660164.1	8.0e-146	89.71	protein LATERAL ROOT PRIMORDIUM 1 [Cucumis sativus] >KGN66542.1 hypothetical pro...	[more]

BLAST of Lsi06G005760 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G12330.4	1.6e-59	42.21	Lateral root primordium (LRP) protein-related	[more]
AT5G12330.2	4.1e-55	48.48	Lateral root primordium (LRP) protein-related	[more]
AT5G12330.1	4.1e-55	48.48	Lateral root primordium (LRP) protein-related	[more]
AT4G36260.1	1.1e-31	43.72	Lateral root primordium (LRP) protein-related	[more]
AT3G51060.1	1.6e-30	33.23	Lateral root primordium (LRP) protein-related	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF05142	DUF702	coord: 155..317 e-value: 5.8E-57 score: 192.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 211..255
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 214..255
None	No IPR available	PANTHER	PTHR31604:SF30	PROTEIN LATERAL ROOT PRIMORDIUM 1	coord: 136..369
IPR006510	Zinc finger, lateral root primordium type 1	TIGRFAM	TIGR01623	TIGR01623	coord: 155..197 e-value: 2.4E-25 score: 86.2
IPR006511	SHORT INTERNODES, C-terminal	TIGRFAM	TIGR01624	TIGR01624	coord: 267..316 e-value: 1.3E-24 score: 83.8
IPR007818	SHI protein family	PANTHER	PTHR31604	PROTEIN LATERAL ROOT PRIMORDIUM 1	coord: 136..369

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi06G005760.1	Lsi06G005760.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009734	auxin-activated signaling pathway
biological_process	GO:0009851	auxin biosynthetic process
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding