Lsi06G005740 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi06G005740
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	DUF4228 domain protein
Location	chr06: 7499996 .. 7500634 (+)
RNA-Seq Expression	Lsi06G005740
Synteny	Lsi06G005740

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCAATGCAGTCTCTCCATGTCTTATATCCATTTCCATCTCCCATCGCCGCCGCCGTCCCTCCGCCGTGAAGGTTGTCTTTTCCGATGGACTGACCAAATTCCTCATCGGAAACGACCACTTCGCCGGCGAGATCATGTTTCAATTCCCAGACATGATGGTCTGCCATGCCGAATCCTTCTTCATCGGTCACCCGATCCCGTCTTTAGCCATCGACGACGAGCTTCTCGTTGGTGAAACCTACTTGGTTCTCCCCATCGATAGGTTTGCCTCCATCGACATTCTCTCGACCTCGTCGCTGGCTATGATTGGGGCAGGTAATGTGTCGGCGGAGAAATTCTCTGGTCCATGTCCGTTCGAGTACGTTCGAGGGACAAATGGGAGAGTTTTGATTAAGGTGATGCCGGAGTTTATTGTTAGGTTAATTTCTCAGGCCGCCGTGGACGGCGGAGAAGGCAGCGGCGGAGGTGGTGGGTTTCTTTGTAGCACGCCGGAGTTGAAGAAACATTACGATCAACTTGTTGGACCTTCGAAAGGGCAAGTTTGGTCGCCGAAATTGGAGACTATTTCGGAGTATAAAATTAGGTATTCGCCTTGTAGATTTGTAGGGTTCAAACTTAAACAAAAAGAAGGCTAA

mRNA sequence

ATGGGCAATGCAGTCTCTCCATGTCTTATATCCATTTCCATCTCCCATCGCCGCCGCCGTCCCTCCGCCGTGAAGGTTGTCTTTTCCGATGGACTGACCAAATTCCTCATCGGAAACGACCACTTCGCCGGCGAGATCATGTTTCAATTCCCAGACATGATGGTCTGCCATGCCGAATCCTTCTTCATCGGTCACCCGATCCCGTCTTTAGCCATCGACGACGAGCTTCTCGTTGGTGAAACCTACTTGGTTCTCCCCATCGATAGGTTTGCCTCCATCGACATTCTCTCGACCTCGTCGCTGGCTATGATTGGGGCAGGTAATGTGTCGGCGGAGAAATTCTCTGGTCCATGTCCGTTCGAGTACGTTCGAGGGACAAATGGGAGAGTTTTGATTAAGGTGATGCCGGAGTTTATTGTTAGGTTAATTTCTCAGGCCGCCGTGGACGGCGGAGAAGGCAGCGGCGGAGGTGGTGGGTTTCTTTGTAGCACGCCGGAGTTGAAGAAACATTACGATCAACTTGTTGGACCTTCGAAAGGGCAAGTTTGGTCGCCGAAATTGGAGACTATTTCGGAGTATAAAATTAGGTATTCGCCTTGTAGATTTGTAGGGTTCAAACTTAAACAAAAAGAAGGCTAA

Coding sequence (CDS)

ATGGGCAATGCAGTCTCTCCATGTCTTATATCCATTTCCATCTCCCATCGCCGCCGCCGTCCCTCCGCCGTGAAGGTTGTCTTTTCCGATGGACTGACCAAATTCCTCATCGGAAACGACCACTTCGCCGGCGAGATCATGTTTCAATTCCCAGACATGATGGTCTGCCATGCCGAATCCTTCTTCATCGGTCACCCGATCCCGTCTTTAGCCATCGACGACGAGCTTCTCGTTGGTGAAACCTACTTGGTTCTCCCCATCGATAGGTTTGCCTCCATCGACATTCTCTCGACCTCGTCGCTGGCTATGATTGGGGCAGGTAATGTGTCGGCGGAGAAATTCTCTGGTCCATGTCCGTTCGAGTACGTTCGAGGGACAAATGGGAGAGTTTTGATTAAGGTGATGCCGGAGTTTATTGTTAGGTTAATTTCTCAGGCCGCCGTGGACGGCGGAGAAGGCAGCGGCGGAGGTGGTGGGTTTCTTTGTAGCACGCCGGAGTTGAAGAAACATTACGATCAACTTGTTGGACCTTCGAAAGGGCAAGTTTGGTCGCCGAAATTGGAGACTATTTCGGAGTATAAAATTAGGTATTCGCCTTGTAGATTTGTAGGGTTCAAACTTAAACAAAAAGAAGGCTAA

Protein sequence

MGNAVSPCLISISISHRRRRPSAVKVVFSDGLTKFLIGNDHFAGEIMFQFPDMMVCHAESFFIGHPIPSLAIDDELLVGETYLVLPIDRFASIDILSTSSLAMIGAGNVSAEKFSGPCPFEYVRGTNGRVLIKVMPEFIVRLISQAAVDGGEGSGGGGGFLCSTPELKKHYDQLVGPSKGQVWSPKLETISEYKIRYSPCRFVGFKLKQKEG

Homology

[Close]

BLAST of Lsi06G005740 vs. ExPASy TrEMBL
Match: A0A1S3BP11 (uncharacterized protein LOC103491983 OS=Cucumis melo OX=3656 GN=LOC103491983 PE=4 SV=1)

HSP 1 Score: 406.4 bits (1043), Expect = 7.5e-110
Identity = 196/212 (92.45%), Postives = 204/212 (96.23%), Query Frame = 0


Query: 1   MGNAVSPCLISISISHRRRRPSAVKVVFSDGLTKFLIGNDHFAGEIMFQFPDMMVCHAES 60
           MGNAVSPCLISISIS RR RPSAVK+VF+DG TKFL+GN HFAGEIMFQFPDMMVCHAES
Sbjct: 1   MGNAVSPCLISISISLRRHRPSAVKLVFTDGPTKFLVGNHHFAGEIMFQFPDMMVCHAES 60

Query: 61  FFIGHPIPSLAIDDELLVGETYLVLPIDRFASIDILSTSSLAMIGAGNVSAEKFSGPCPF 120
           FFIGHPIPSL+IDDELLVGETYLVLPIDRFAS+D+LSTSSLAMIGAGN+SAEKFSGPCPF
Sbjct: 61  FFIGHPIPSLSIDDELLVGETYLVLPIDRFASVDVLSTSSLAMIGAGNMSAEKFSGPCPF 120

Query: 121 EYVRGTNGRVLIKVMPEFIVRLISQAAVDGGEGSGGGGGFLCSTPELKKHYDQLVGPSKG 180
           EYVRGTNGRVLIKVMPEFIVRLIS AAVDGGE  GGGGGFLCSTPELKKHYDQLVG +KG
Sbjct: 121 EYVRGTNGRVLIKVMPEFIVRLISPAAVDGGESGGGGGGFLCSTPELKKHYDQLVGSTKG 180

Query: 181 QVWSPKLETISEYKIRYSPCRFVGFKLKQKEG 213
           QVWSPKLETISEYKIRYSPCRFVGFKLKQKEG
Sbjct: 181 QVWSPKLETISEYKIRYSPCRFVGFKLKQKEG 212

[Close]

BLAST of Lsi06G005740 vs. ExPASy TrEMBL
Match: A0A5A7UN34 (DUF4228 domain protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold225G00360 PE=4 SV=1)

HSP 1 Score: 405.2 bits (1040), Expect = 1.7e-109
Identity = 195/212 (91.98%), Postives = 204/212 (96.23%), Query Frame = 0


Query: 1   MGNAVSPCLISISISHRRRRPSAVKVVFSDGLTKFLIGNDHFAGEIMFQFPDMMVCHAES 60
           MGNAVSPCLISISIS RR RPSAVK+VF+DG TKFL+GN HFAGEIMFQFPDMMVCHAES
Sbjct: 1   MGNAVSPCLISISISLRRHRPSAVKLVFTDGPTKFLVGNHHFAGEIMFQFPDMMVCHAES 60

Query: 61  FFIGHPIPSLAIDDELLVGETYLVLPIDRFASIDILSTSSLAMIGAGNVSAEKFSGPCPF 120
           FFIGHPIPSL+IDDELLVGETYLVLPIDRFAS+D+LSTSSLAMIGAGN+SAEKFSGPCPF
Sbjct: 61  FFIGHPIPSLSIDDELLVGETYLVLPIDRFASVDVLSTSSLAMIGAGNMSAEKFSGPCPF 120

Query: 121 EYVRGTNGRVLIKVMPEFIVRLISQAAVDGGEGSGGGGGFLCSTPELKKHYDQLVGPSKG 180
           EYVRGTNGRVLIKVMPEFIVRLIS AA+DGGE  GGGGGFLCSTPELKKHYDQLVG +KG
Sbjct: 121 EYVRGTNGRVLIKVMPEFIVRLISPAAMDGGESGGGGGGFLCSTPELKKHYDQLVGSTKG 180

Query: 181 QVWSPKLETISEYKIRYSPCRFVGFKLKQKEG 213
           QVWSPKLETISEYKIRYSPCRFVGFKLKQKEG
Sbjct: 181 QVWSPKLETISEYKIRYSPCRFVGFKLKQKEG 212

[Close]

BLAST of Lsi06G005740 vs. ExPASy TrEMBL
Match: A0A0A0LZV5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G627480 PE=4 SV=1)

HSP 1 Score: 389.0 bits (998), Expect = 1.2e-104
Identity = 184/212 (86.79%), Postives = 199/212 (93.87%), Query Frame = 0


Query: 1   MGNAVSPCLISISISHRRRRPSAVKVVFSDGLTKFLIGNDHFAGEIMFQFPDMMVCHAES 60
           MGNAVSPCL+SISIS   RRPS VK+VF++G TKFL G+ HFAGEIMFQFPDMMVCHAES
Sbjct: 1   MGNAVSPCLLSISISRCHRRPSTVKLVFTNGPTKFLAGDHHFAGEIMFQFPDMMVCHAES 60

Query: 61  FFIGHPIPSLAIDDELLVGETYLVLPIDRFASIDILSTSSLAMIGAGNVSAEKFSGPCPF 120
           FFIGHPIPSL+IDD+L+ GETYL+LPIDRFAS+D+LSTSSLA IGAGN+S EKFSGPCPF
Sbjct: 61  FFIGHPIPSLSIDDQLIAGETYLILPIDRFASVDVLSTSSLATIGAGNMSVEKFSGPCPF 120

Query: 121 EYVRGTNGRVLIKVMPEFIVRLISQAAVDGGEGSGGGGGFLCSTPELKKHYDQLVGPSKG 180
           EYVRGTNG+VLIKVMPEFIVRLISQAA+DGGE  GGGGGFLCSTPELKKHYDQLVG +KG
Sbjct: 121 EYVRGTNGKVLIKVMPEFIVRLISQAAMDGGESEGGGGGFLCSTPELKKHYDQLVGSTKG 180

Query: 181 QVWSPKLETISEYKIRYSPCRFVGFKLKQKEG 213
           QVWSPKLETISEYKIRYSPCRFVGFKLKQKEG
Sbjct: 181 QVWSPKLETISEYKIRYSPCRFVGFKLKQKEG 212

[Close]

BLAST of Lsi06G005740 vs. ExPASy TrEMBL
Match: A0A6J1HB88 (uncharacterized protein LOC111461744 OS=Cucurbita moschata OX=3662 GN=LOC111461744 PE=4 SV=1)

HSP 1 Score: 332.4 bits (851), Expect = 1.4e-87
Identity = 164/212 (77.36%), Postives = 181/212 (85.38%), Query Frame = 0


Query: 1   MGNAVSPCLISISISHRRRRPSAVKVVFSDGLTKFLIGNDHFAGEIMFQFPDMMVCHAES 60
           MGNA+SPCLI  SI++ R R SAVK++FS G T+ L G+ HFAGEIMFQFPDM+VCHA+S
Sbjct: 1   MGNAMSPCLIPPSITN-RHRSSAVKLIFSSGPTRILAGSHHFAGEIMFQFPDMIVCHADS 60

Query: 61  FFIGHPIPSLAIDDELLVGETYLVLPIDRFASIDILSTSSLAMIGAGNVSAEKFSGPCPF 120
           FFIGH IPSLAI+D+LL GETYLVLPIDRF+  D+LSTSSLA IGAGN +AEKFS  CPF
Sbjct: 61  FFIGHRIPSLAIEDKLLAGETYLVLPIDRFSLNDVLSTSSLAAIGAGNEAAEKFSSSCPF 120

Query: 121 EYVRGTNGRVLIKVMPEFIVRLISQAAVDGGEGSGGGGGFLCSTPELKKHYDQLVGPSKG 180
           EYVRG NG+ LIKVMPEFIVRL+S     GGE    GGGFLCSTPELKKHYDQLVG SKG
Sbjct: 121 EYVRGRNGKALIKVMPEFIVRLVSPGGAYGGE----GGGFLCSTPELKKHYDQLVGTSKG 180

Query: 181 QVWSPKLETISEYKIRYSPCRFVGFKLKQKEG 213
           QVWSP LETISEYKIRYSPCRFVGFK+KQKEG
Sbjct: 181 QVWSPSLETISEYKIRYSPCRFVGFKVKQKEG 207

[Close]

BLAST of Lsi06G005740 vs. ExPASy TrEMBL
Match: A0A6J1JKY3 (uncharacterized protein LOC111485518 OS=Cucurbita maxima OX=3661 GN=LOC111485518 PE=4 SV=1)

HSP 1 Score: 329.3 bits (843), Expect = 1.2e-86
Identity = 161/212 (75.94%), Postives = 180/212 (84.91%), Query Frame = 0


Query: 1   MGNAVSPCLISISISHRRRRPSAVKVVFSDGLTKFLIGNDHFAGEIMFQFPDMMVCHAES 60
           MGNA+SPC+I  SI++ R R SAVK++FS G T+ L G+ HFAGEIMFQFPDM+VCHA+S
Sbjct: 1   MGNAISPCIIPPSITN-RHRSSAVKLIFSSGPTRILAGSHHFAGEIMFQFPDMIVCHADS 60

Query: 61  FFIGHPIPSLAIDDELLVGETYLVLPIDRFASIDILSTSSLAMIGAGNVSAEKFSGPCPF 120
           FFIGH IPSLAI+D+LL GETYLVLPIDRF+  D+LSTSSLA IGAGN +AEKFS  CPF
Sbjct: 61  FFIGHRIPSLAIEDKLLAGETYLVLPIDRFSLNDVLSTSSLAAIGAGNEAAEKFSSSCPF 120

Query: 121 EYVRGTNGRVLIKVMPEFIVRLISQAAVDGGEGSGGGGGFLCSTPELKKHYDQLVGPSKG 180
           +YVRG NG+ LIKVMPEFIVRL+S     GGE    GGGFLCSTPELKKHYDQLVG  KG
Sbjct: 121 QYVRGRNGKALIKVMPEFIVRLVSPGGAYGGE----GGGFLCSTPELKKHYDQLVGTPKG 180

Query: 181 QVWSPKLETISEYKIRYSPCRFVGFKLKQKEG 213
           QVWSP LETISEYKIRYSPCRFVGFK+KQKEG
Sbjct: 181 QVWSPSLETISEYKIRYSPCRFVGFKVKQKEG 207

[Close]

BLAST of Lsi06G005740 vs. NCBI nr
Match: XP_008450347.1 (PREDICTED: uncharacterized protein LOC103491983 [Cucumis melo])

HSP 1 Score: 406.4 bits (1043), Expect = 1.5e-109
Identity = 196/212 (92.45%), Postives = 204/212 (96.23%), Query Frame = 0


Query: 1   MGNAVSPCLISISISHRRRRPSAVKVVFSDGLTKFLIGNDHFAGEIMFQFPDMMVCHAES 60
           MGNAVSPCLISISIS RR RPSAVK+VF+DG TKFL+GN HFAGEIMFQFPDMMVCHAES
Sbjct: 1   MGNAVSPCLISISISLRRHRPSAVKLVFTDGPTKFLVGNHHFAGEIMFQFPDMMVCHAES 60

Query: 61  FFIGHPIPSLAIDDELLVGETYLVLPIDRFASIDILSTSSLAMIGAGNVSAEKFSGPCPF 120
           FFIGHPIPSL+IDDELLVGETYLVLPIDRFAS+D+LSTSSLAMIGAGN+SAEKFSGPCPF
Sbjct: 61  FFIGHPIPSLSIDDELLVGETYLVLPIDRFASVDVLSTSSLAMIGAGNMSAEKFSGPCPF 120

Query: 121 EYVRGTNGRVLIKVMPEFIVRLISQAAVDGGEGSGGGGGFLCSTPELKKHYDQLVGPSKG 180
           EYVRGTNGRVLIKVMPEFIVRLIS AAVDGGE  GGGGGFLCSTPELKKHYDQLVG +KG
Sbjct: 121 EYVRGTNGRVLIKVMPEFIVRLISPAAVDGGESGGGGGGFLCSTPELKKHYDQLVGSTKG 180

Query: 181 QVWSPKLETISEYKIRYSPCRFVGFKLKQKEG 213
           QVWSPKLETISEYKIRYSPCRFVGFKLKQKEG
Sbjct: 181 QVWSPKLETISEYKIRYSPCRFVGFKLKQKEG 212

[Close]

BLAST of Lsi06G005740 vs. NCBI nr
Match: KAA0056017.1 (DUF4228 domain protein [Cucumis melo var. makuwa] >TYK27704.1 DUF4228 domain protein [Cucumis melo var. makuwa])

HSP 1 Score: 405.2 bits (1040), Expect = 3.4e-109
Identity = 195/212 (91.98%), Postives = 204/212 (96.23%), Query Frame = 0


Query: 1   MGNAVSPCLISISISHRRRRPSAVKVVFSDGLTKFLIGNDHFAGEIMFQFPDMMVCHAES 60
           MGNAVSPCLISISIS RR RPSAVK+VF+DG TKFL+GN HFAGEIMFQFPDMMVCHAES
Sbjct: 1   MGNAVSPCLISISISLRRHRPSAVKLVFTDGPTKFLVGNHHFAGEIMFQFPDMMVCHAES 60

Query: 61  FFIGHPIPSLAIDDELLVGETYLVLPIDRFASIDILSTSSLAMIGAGNVSAEKFSGPCPF 120
           FFIGHPIPSL+IDDELLVGETYLVLPIDRFAS+D+LSTSSLAMIGAGN+SAEKFSGPCPF
Sbjct: 61  FFIGHPIPSLSIDDELLVGETYLVLPIDRFASVDVLSTSSLAMIGAGNMSAEKFSGPCPF 120

Query: 121 EYVRGTNGRVLIKVMPEFIVRLISQAAVDGGEGSGGGGGFLCSTPELKKHYDQLVGPSKG 180
           EYVRGTNGRVLIKVMPEFIVRLIS AA+DGGE  GGGGGFLCSTPELKKHYDQLVG +KG
Sbjct: 121 EYVRGTNGRVLIKVMPEFIVRLISPAAMDGGESGGGGGGFLCSTPELKKHYDQLVGSTKG 180

Query: 181 QVWSPKLETISEYKIRYSPCRFVGFKLKQKEG 213
           QVWSPKLETISEYKIRYSPCRFVGFKLKQKEG
Sbjct: 181 QVWSPKLETISEYKIRYSPCRFVGFKLKQKEG 212

[Close]

BLAST of Lsi06G005740 vs. NCBI nr
Match: XP_038880154.1 (uncharacterized protein LOC120071833 [Benincasa hispida])

HSP 1 Score: 389.4 bits (999), Expect = 2.0e-104
Identity = 189/212 (89.15%), Postives = 199/212 (93.87%), Query Frame = 0


Query: 1   MGNAVSPCLISISISHRRRRPSAVKVVFSDGLTKFLIGNDHFAGEIMFQFPDMMVCHAES 60
           MGNA SPC +SISISH RRR SAVK++FS+G T+FL GN H AGEIMFQFPDMMVCHAES
Sbjct: 1   MGNAASPCFLSISISH-RRRTSAVKLIFSNGPTQFLFGNHHVAGEIMFQFPDMMVCHAES 60

Query: 61  FFIGHPIPSLAIDDELLVGETYLVLPIDRFASIDILSTSSLAMIGAGNVSAEKFSGPCPF 120
           FFIGHPIPSLAI+D+LL+GETYLVLPIDRFASID+LSTSSLAMI AGN SAEKFSGPCPF
Sbjct: 61  FFIGHPIPSLAINDKLLIGETYLVLPIDRFASIDVLSTSSLAMIAAGNASAEKFSGPCPF 120

Query: 121 EYVRGTNGRVLIKVMPEFIVRLISQAAVDGGEGSGGGGGFLCSTPELKKHYDQLVGPSKG 180
           EYVRGTNGRVLIKVMPEFIVRLISQAA+DGG G GGGGGFLCSTPELKKHYDQLVG SKG
Sbjct: 121 EYVRGTNGRVLIKVMPEFIVRLISQAAMDGGGGDGGGGGFLCSTPELKKHYDQLVGTSKG 180

Query: 181 QVWSPKLETISEYKIRYSPCRFVGFKLKQKEG 213
           QVWSPKLETISEYKIRYSPCRFVGFKLKQKEG
Sbjct: 181 QVWSPKLETISEYKIRYSPCRFVGFKLKQKEG 211

[Close]

BLAST of Lsi06G005740 vs. NCBI nr
Match: XP_004139126.1 (uncharacterized protein LOC101216872 [Cucumis sativus] >KGN66539.1 hypothetical protein Csa_007142 [Cucumis sativus])

HSP 1 Score: 389.0 bits (998), Expect = 2.5e-104
Identity = 184/212 (86.79%), Postives = 199/212 (93.87%), Query Frame = 0


Query: 1   MGNAVSPCLISISISHRRRRPSAVKVVFSDGLTKFLIGNDHFAGEIMFQFPDMMVCHAES 60
           MGNAVSPCL+SISIS   RRPS VK+VF++G TKFL G+ HFAGEIMFQFPDMMVCHAES
Sbjct: 1   MGNAVSPCLLSISISRCHRRPSTVKLVFTNGPTKFLAGDHHFAGEIMFQFPDMMVCHAES 60

Query: 61  FFIGHPIPSLAIDDELLVGETYLVLPIDRFASIDILSTSSLAMIGAGNVSAEKFSGPCPF 120
           FFIGHPIPSL+IDD+L+ GETYL+LPIDRFAS+D+LSTSSLA IGAGN+S EKFSGPCPF
Sbjct: 61  FFIGHPIPSLSIDDQLIAGETYLILPIDRFASVDVLSTSSLATIGAGNMSVEKFSGPCPF 120

Query: 121 EYVRGTNGRVLIKVMPEFIVRLISQAAVDGGEGSGGGGGFLCSTPELKKHYDQLVGPSKG 180
           EYVRGTNG+VLIKVMPEFIVRLISQAA+DGGE  GGGGGFLCSTPELKKHYDQLVG +KG
Sbjct: 121 EYVRGTNGKVLIKVMPEFIVRLISQAAMDGGESEGGGGGFLCSTPELKKHYDQLVGSTKG 180

Query: 181 QVWSPKLETISEYKIRYSPCRFVGFKLKQKEG 213
           QVWSPKLETISEYKIRYSPCRFVGFKLKQKEG
Sbjct: 181 QVWSPKLETISEYKIRYSPCRFVGFKLKQKEG 212

[Close]

BLAST of Lsi06G005740 vs. NCBI nr
Match: XP_022961145.1 (uncharacterized protein LOC111461744 [Cucurbita moschata])

HSP 1 Score: 332.4 bits (851), Expect = 2.8e-87
Identity = 164/212 (77.36%), Postives = 181/212 (85.38%), Query Frame = 0


Query: 1   MGNAVSPCLISISISHRRRRPSAVKVVFSDGLTKFLIGNDHFAGEIMFQFPDMMVCHAES 60
           MGNA+SPCLI  SI++ R R SAVK++FS G T+ L G+ HFAGEIMFQFPDM+VCHA+S
Sbjct: 1   MGNAMSPCLIPPSITN-RHRSSAVKLIFSSGPTRILAGSHHFAGEIMFQFPDMIVCHADS 60

Query: 61  FFIGHPIPSLAIDDELLVGETYLVLPIDRFASIDILSTSSLAMIGAGNVSAEKFSGPCPF 120
           FFIGH IPSLAI+D+LL GETYLVLPIDRF+  D+LSTSSLA IGAGN +AEKFS  CPF
Sbjct: 61  FFIGHRIPSLAIEDKLLAGETYLVLPIDRFSLNDVLSTSSLAAIGAGNEAAEKFSSSCPF 120

Query: 121 EYVRGTNGRVLIKVMPEFIVRLISQAAVDGGEGSGGGGGFLCSTPELKKHYDQLVGPSKG 180
           EYVRG NG+ LIKVMPEFIVRL+S     GGE    GGGFLCSTPELKKHYDQLVG SKG
Sbjct: 121 EYVRGRNGKALIKVMPEFIVRLVSPGGAYGGE----GGGFLCSTPELKKHYDQLVGTSKG 180

Query: 181 QVWSPKLETISEYKIRYSPCRFVGFKLKQKEG 213
           QVWSP LETISEYKIRYSPCRFVGFK+KQKEG
Sbjct: 181 QVWSPSLETISEYKIRYSPCRFVGFKVKQKEG 207

[Close]

BLAST of Lsi06G005740 vs. TAIR 10
Match: AT5G12340.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G28190.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 180.6 bits (457), Expect = 1.3e-45
Identity = 105/212 (49.53%), Postives = 134/212 (63.21%), Query Frame = 0


Query: 18  RRRPSAVKVVFSDGL-TKFLIG-NDHFAGEIMFQFPDMMVCHAESFFIGHPIPSLAIDDE 77
           RRR   V +VF + + TK L G   H AGEIMF+FPD +VCHA+SF+IG  IP+LA+DD 
Sbjct: 14  RRRQGIVTLVFFEHVSTKTLCGFKKHVAGEIMFEFPDQIVCHADSFYIGRQIPALAMDDY 73

Query: 78  LLVGETYLVLPIDRFASIDILSTSSLAMIGA------GNVSAEKF---SGPCPFEYVRGT 137
           L+ G+TY VLPI+RF    IL+TS L++  +       N     F   S P PFEY +G 
Sbjct: 74  LIPGQTYFVLPIERF-QYKILTTSCLSIFNSNLENVRSNTPPLNFTAPSSPPPFEYSQGP 133

Query: 138 NGRVLIKVMPEFIVRLI-------SQAAVDGGEGSGGGGGFLCSTPELKKHYDQLVGPSK 197
           NG++LIKV PEFI+ LI        + A   GE S      +C++PELKK YDQLVG ++
Sbjct: 134 NGKILIKVSPEFIISLICKNRNIREEEATSCGENSA-----ICNSPELKKQYDQLVG-TR 193

Query: 198 GQVWSPKLETISEYKIRYSPCRFVGFKLKQKE 212
             +WSP L+TISE+KIR SP RF G   KQ E
Sbjct: 194 EHMWSPNLQTISEHKIRVSPLRFFGLNRKQDE 218

[Close]

BLAST of Lsi06G005740 vs. TAIR 10
Match: AT1G28190.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G12340.1); Has 166 Blast hits to 162 proteins in 36 species: Archae - 0; Bacteria - 2; Metazoa - 15; Fungi - 5; Plants - 124; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink). )

HSP 1 Score: 82.8 bits (203), Expect = 3.6e-16
Identity = 60/181 (33.15%), Postives = 91/181 (50.28%), Query Frame = 0


Query: 24  VKVVFSDGLTKFLIGNDHFAGEIMFQFPDMMVCHAESFFIGHPIPSLAIDDELLVGETYL 83
           +K+V SDG  + +        E+   FP   +C ++  +IG   P L+  + L +G  Y 
Sbjct: 39  IKLVRSDGSLQ-VYDRPVVVSELTKDFPKHKICRSDLLYIGQKTPVLSETETLKLGLNYF 98

Query: 84  VLPIDRFAS-IDILSTSSLAMIGAGNVSAEKF-SGPCPFEYVRGTNG-RVLIKVMPEFIV 143
           +LP D F + +  L+ ++L     G V  +K    P PF   +G  G R+ I+V  EF+ 
Sbjct: 99  LLPSDFFKNDLSFLTIATLKTPQNGGVLVKKTQQQPQPFLIQKGEKGERLRIRVSEEFVS 158

Query: 144 RLISQA-------AVDGGEGSGGGGGFLCSTPELKKHYDQLVGPSKGQVWSPKLETISEY 195
            L+ +          +  EG G G G +C+T +LKK Y QLVG  +   W PKLETI+E 
Sbjct: 159 ELMMEGKKNRVNEEEEEEEGGGEGEGRVCTTVKLKKDYVQLVGLRR---WKPKLETITET 215

The following BLAST results are available for this feature:

BLAST of Lsi06G005740 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi06G005740 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BP11	7.5e-110	92.45	uncharacterized protein LOC103491983 OS=Cucumis melo OX=3656 GN=LOC103491983 PE=...	[more]
A0A5A7UN34	1.7e-109	91.98	DUF4228 domain protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2...	[more]
A0A0A0LZV5	1.2e-104	86.79	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G627480 PE=4 SV=1	[more]
A0A6J1HB88	1.4e-87	77.36	uncharacterized protein LOC111461744 OS=Cucurbita moschata OX=3662 GN=LOC1114617...	[more]
A0A6J1JKY3	1.2e-86	75.94	uncharacterized protein LOC111485518 OS=Cucurbita maxima OX=3661 GN=LOC111485518...	[more]

BLAST of Lsi06G005740 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008450347.1	1.5e-109	92.45	PREDICTED: uncharacterized protein LOC103491983 [Cucumis melo]	[more]
KAA0056017.1	3.4e-109	91.98	DUF4228 domain protein [Cucumis melo var. makuwa] >TYK27704.1 DUF4228 domain pro...	[more]
XP_038880154.1	2.0e-104	89.15	uncharacterized protein LOC120071833 [Benincasa hispida]	[more]
XP_004139126.1	2.5e-104	86.79	uncharacterized protein LOC101216872 [Cucumis sativus] >KGN66539.1 hypothetical ...	[more]
XP_022961145.1	2.8e-87	77.36	uncharacterized protein LOC111461744 [Cucurbita moschata]	[more]

BLAST of Lsi06G005740 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G12340.1	1.3e-45	49.53	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G28190.1	3.6e-16	33.15	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025322	Protein of unknown function DUF4228, plant	PFAM	PF14009	DUF4228	coord: 1..192 e-value: 9.9E-27 score: 94.5
None	No IPR available	PANTHER	PTHR33052:SF4	DUF4228 DOMAIN PROTEIN	coord: 1..198
None	No IPR available	PANTHER	PTHR33052	DUF4228 DOMAIN PROTEIN-RELATED	coord: 1..198

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi06G005740.1	Lsi06G005740.1	mRNA