Lsi06G005260 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi06G005260
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	cyclin-dependent protein kinase inhibitor SMR9-like
Location	chr06: 6440972 .. 6441417 (+)
RNA-Seq Expression	Lsi06G005260
Synteny	Lsi06G005260

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTTCTCCATACCCTTCTATTACTAACAAATCTCACAAAAAGAAAGCACTTTTCAGAAAAGAAGCCTTGTAATATGGCTTCTAAAGGAGGAGAAGCAAGAAGAAGAGCACGAAAAACAACAACAACAACAACAACCCAATTGAAGAAGAAGAAGAAGAACATCAAGAAAATCAAGAACATCAAGTTAGAAGAAGAAGAAGAAGAAATTGAAAAAGGTTCAAGCTCCACAGCCATTTTTGAAGAAGAATCAGTTTCAAGCTCTGATTTTGAACAGTGTTGTACTCCAAAAGCAGAGAGATTCAAGATCCCAGAAATCAAAATTTGCCCACCAGCTCCAAAAAAGCAAAGGCTTTTTACAAATTGTTCTTTACAAAGACCTTCTCCAATTGCCTTCTTTGCTTCACCAGATATAGAGCTTTTCTTCCTCTTCTCATCACAATGA

mRNA sequence

ATGGAAAAGAAGCCTTGTAATATGGCTTCTAAAGGAGGAGAAGCAAGAAGAAGAGCACGAAAAACAACAACAACAACAACAACCCAATTGAAGAAGAAGAAGAAGAACATCAAGAAAATCAAGAACATCAAGTTAGAAGAAGAAGAAGAAGAAATTGAAAAAGGTTCAAGCTCCACAGCCATTTTTGAAGAAGAATCAGTTTCAAGCTCTGATTTTGAACAGTGTTGTACTCCAAAAGCAGAGAGATTCAAGATCCCAGAAATCAAAATTTGCCCACCAGCTCCAAAAAAGCAAAGGCTTTTTACAAATTGTTCTTTACAAAGACCTTCTCCAATTGCCTTCTTTGCTTCACCAGATATAGAGCTTTTCTTCCTCTTCTCATCACAATGA

Coding sequence (CDS)

ATGGAAAAGAAGCCTTGTAATATGGCTTCTAAAGGAGGAGAAGCAAGAAGAAGAGCACGAAAAACAACAACAACAACAACAACCCAATTGAAGAAGAAGAAGAAGAACATCAAGAAAATCAAGAACATCAAGTTAGAAGAAGAAGAAGAAGAAATTGAAAAAGGTTCAAGCTCCACAGCCATTTTTGAAGAAGAATCAGTTTCAAGCTCTGATTTTGAACAGTGTTGTACTCCAAAAGCAGAGAGATTCAAGATCCCAGAAATCAAAATTTGCCCACCAGCTCCAAAAAAGCAAAGGCTTTTTACAAATTGTTCTTTACAAAGACCTTCTCCAATTGCCTTCTTTGCTTCACCAGATATAGAGCTTTTCTTCCTCTTCTCATCACAATGA

Protein sequence

MEKKPCNMASKGGEARRRARKTTTTTTTQLKKKKKNIKKIKNIKLEEEEEEIEKGSSSTAIFEEESVSSSDFEQCCTPKAERFKIPEIKICPPAPKKQRLFTNCSLQRPSPIAFFASPDIELFFLFSSQ

Homology

[Close]

BLAST of Lsi06G005260 vs. ExPASy Swiss-Prot
Match: F4IWB3 (Cyclin-dependent protein kinase inhibitor SMR13 OS=Arabidopsis thaliana OX=3702 GN=SMR13 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 2.7e-11
Identity = 32/51 (62.75%), Postives = 40/51 (78.43%), Query Frame = 0


Query: 75  CCTPKAERFKIPEIKICPPAPKKQRLFTNCSLQRPSPIAFFASPDIELFFL 126
           CCTPKA++ +IPE+  CPPAPKKQR+  NC L+R   I FFA P+IELFF+
Sbjct: 54  CCTPKAKKSRIPEMLTCPPAPKKQRVSKNCVLRR-RQIVFFAPPEIELFFV 103

[Close]

BLAST of Lsi06G005260 vs. ExPASy Swiss-Prot
Match: Q3ECS5 (Cyclin-dependent protein kinase inhibitor SMR9 OS=Arabidopsis thaliana OX=3702 GN=SMR9 PE=3 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 3.7e-08
Identity = 48/121 (39.67%), Postives = 71/121 (58.68%), Query Frame = 0


Query: 8   MASKGGEARRRARKTTTTTTTQLKKKKKNIKKIKNIKLEEEEEEIEKGSSSTAIFEEESV 67
           MASKG   ++  R+TTT      +++K++  K  +       +     S+ST+     + 
Sbjct: 1   MASKG---KKPLRRTTT------RRRKRSHFKNPSPPCSINSDVTSTSSTSTSPTSTATP 60

Query: 68  SSSDFEQ-CCTPKAERFKIPEIKICPPAPKKQRLFTNCSLQRPSPIAFFASPDIELFFLF 127
           S    E  CCTP  E+ +IPE+  CPPAPKKQ++  NC+L+R   IAFFA PD+ELFF+F
Sbjct: 61  SPVSAESGCCTP--EKSRIPEMLTCPPAPKKQKVAQNCALRR-RQIAFFAPPDVELFFVF 109

[Close]

BLAST of Lsi06G005260 vs. ExPASy Swiss-Prot
Match: Q1G3Y4 (Cyclin-dependent protein kinase inhibitor SMR15 OS=Arabidopsis thaliana OX=3702 GN=SMR15 PE=3 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 2.5e-04
Identity = 25/63 (39.68%), Postives = 38/63 (60.32%), Query Frame = 0


Query: 66  SVSSSDFEQCC--TPKAERFKIPEIKICPPAPKKQRLFTNCSLQRPSPIAFFASPDIELF 125
           +VS+++ E  C  TP A+  +IP +  CPPAPKK++L    S     P  FF+ PD+E  
Sbjct: 44  AVSNTEDEDLCPTTPTADSVRIPTVIPCPPAPKKRKLTLKVSY---GPREFFSPPDLETV 103

Query: 126 FLF 127
           F++
Sbjct: 104 FIY 103

[Close]

BLAST of Lsi06G005260 vs. ExPASy TrEMBL
Match: A0A0A0M041 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G613590 PE=4 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 8.5e-32
Identity = 97/135 (71.85%), Postives = 102/135 (75.56%), Query Frame = 0


Query: 8   MASKGGEARRRARKTTTTTTTQLKKKKKNIKKIKNIKLEEEEEEIEKGSSSTAIFEEESV 67
           MASK GEARRRARKTTTT     KK KKNIK   NIKLEEEE E    SS+T  FEE+SV
Sbjct: 1   MASKRGEARRRARKTTTTQLKN-KKIKKNIKN-NNIKLEEEEIEKGTSSSTTINFEEKSV 60

Query: 68  S--SSDFEQ-------CCTPKAERFKIPEIKICPPAPKKQRLF----TNCSLQRPSPIAF 127
           S  S DFE+       C TPKAERFKIPEIKICPPAPKK+RLF    +NCSLQRPSPIAF
Sbjct: 61  SRRSCDFEEEEEEEECCSTPKAERFKIPEIKICPPAPKKRRLFSNSNSNCSLQRPSPIAF 120

Query: 128 FASPDIELFFLFSSQ 130
           FASPDIELFF FSSQ
Sbjct: 121 FASPDIELFFFFSSQ 133

[Close]

BLAST of Lsi06G005260 vs. ExPASy TrEMBL
Match: A0A6J1DK32 (cyclin-dependent protein kinase inhibitor SMR9-like OS=Momordica charantia OX=3673 GN=LOC111021634 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 8.5e-24
Identity = 78/126 (61.90%), Postives = 90/126 (71.43%), Query Frame = 0


Query: 8   MASKGGEARRRAR--KTTTTTTTQLKKKKKNIKKIKNIKLEEEEEE--IEKGSSSTAIFE 67
           MASKGG AR + +  K     + Q  KK+         K +E E E  +E  SSS A+ E
Sbjct: 1   MASKGGIARTKMKMSKKIKKKSPQRMKKRNPPPPSPPPKNQETETETAVELASSSAAMAE 60

Query: 68  EESVSSSDFEQCCTPKAERFKIPEIKICPPAPKKQRLFTNCS-LQRPSPIAFFASPDIEL 127
            ES+ SSD E+CCTPKAERF+IPEIKICPPAPKKQR+F+NCS LQRPSPIAFFASPDIEL
Sbjct: 61  NESM-SSDLEECCTPKAERFRIPEIKICPPAPKKQRIFSNCSNLQRPSPIAFFASPDIEL 120

Query: 128 FFLFSS 129
           FF FSS
Sbjct: 121 FFFFSS 125

[Close]

BLAST of Lsi06G005260 vs. ExPASy TrEMBL
Match: B9GF02 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_001G257700 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 1.4e-13
Identity = 56/120 (46.67%), Postives = 74/120 (61.67%), Query Frame = 0


Query: 20  RKTTTTTTTQLKKKKKNIKKIKNIKLEEEEEEIEKGSSSTAI------------FEEESV 79
           RK T   TT+  + KK + K K+IK     E++   SS+T              FE   +
Sbjct: 6   RKRTRAKTTRRTQYKKRVMKPKSIKEASIIEDLPSNSSTTTTSCNGCSKIDGLDFEGVDI 65

Query: 80  SSSDFEQCCTPKAERFKIPEIKICPPAPKKQRLFTNCSLQRPSPIAFFASPDIELFFLFS 128
           S+S    C TPKAERF+IPEI+ CPPAP+K+R+ +NCSLQR  PIAFFA PD+ELFF ++
Sbjct: 66  SAS---ACSTPKAERFRIPEIQTCPPAPRKERIISNCSLQR-RPIAFFAPPDLELFFFYA 121

[Close]

BLAST of Lsi06G005260 vs. ExPASy TrEMBL
Match: A0A6M2EGF4 (Uncharacterized protein OS=Populus davidiana OX=266767 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.8e-13
Identity = 56/121 (46.28%), Postives = 74/121 (61.16%), Query Frame = 0


Query: 20  RKTTTTTTTQLKKKKKNIKKIKNIKLEEEEEEIEKGSSSTAI-------------FEEES 79
           RK T   TT+  + KK + K K+IK     E++   SS+T               FE   
Sbjct: 6   RKRTRAKTTRRTQYKKRVMKPKSIKEASIIEDLPSNSSTTTTTSCNGCSKIDGLDFEGVD 65

Query: 80  VSSSDFEQCCTPKAERFKIPEIKICPPAPKKQRLFTNCSLQRPSPIAFFASPDIELFFLF 128
           +S+S    C TPKAERF+IPEI+ CPPAP+K+R+ +NCSLQR  PIAFFA PD+ELFF +
Sbjct: 66  ISAS---ACSTPKAERFRIPEIQTCPPAPRKERIISNCSLQR-RPIAFFAPPDLELFFFY 122

[Close]

BLAST of Lsi06G005260 vs. ExPASy TrEMBL
Match: A0A2K1Z353 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_009G053000 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 5.2e-13
Identity = 56/121 (46.28%), Postives = 75/121 (61.98%), Query Frame = 0


Query: 16  RRRARKTTTTTTTQLKKKKKNIKKIKNIKLEEEEEEIEKGSSSTAIFEEESVSSSDFE-- 75
           R+RAR  T T TT+  + K+   K K+IK     ++    +SST+  +   +   D E  
Sbjct: 6   RKRARARTRTRTTRKTQYKRAAVKPKSIKGASTIDQDFPSNSSTSCDDCSRIDGLDVEGV 65

Query: 76  -----QCCTPKAERFKIPEIKICPPAPKKQRLFTNCSLQRPSPIAFFASPDIELFFLFSS 130
                 C TPKAERF+IPEI+ CPPAP+KQR+ + CSLQR  PIAFFA PD+ELFF ++ 
Sbjct: 66  DISTSACSTPKAERFRIPEIQTCPPAPRKQRMISICSLQR-RPIAFFAPPDLELFFFYAL 125

[Close]

BLAST of Lsi06G005260 vs. NCBI nr
Match: KGN66487.1 (hypothetical protein Csa_006949 [Cucumis sativus])

HSP 1 Score: 146.4 bits (368), Expect = 1.7e-31
Identity = 97/135 (71.85%), Postives = 102/135 (75.56%), Query Frame = 0


Query: 8   MASKGGEARRRARKTTTTTTTQLKKKKKNIKKIKNIKLEEEEEEIEKGSSSTAIFEEESV 67
           MASK GEARRRARKTTTT     KK KKNIK   NIKLEEEE E    SS+T  FEE+SV
Sbjct: 1   MASKRGEARRRARKTTTTQLKN-KKIKKNIKN-NNIKLEEEEIEKGTSSSTTINFEEKSV 60

Query: 68  S--SSDFEQ-------CCTPKAERFKIPEIKICPPAPKKQRLF----TNCSLQRPSPIAF 127
           S  S DFE+       C TPKAERFKIPEIKICPPAPKK+RLF    +NCSLQRPSPIAF
Sbjct: 61  SRRSCDFEEEEEEEECCSTPKAERFKIPEIKICPPAPKKRRLFSNSNSNCSLQRPSPIAF 120

Query: 128 FASPDIELFFLFSSQ 130
           FASPDIELFF FSSQ
Sbjct: 121 FASPDIELFFFFSSQ 133

[Close]

BLAST of Lsi06G005260 vs. NCBI nr
Match: KAG6590203.1 (Cyclin-dependent protein kinase inhibitor SMR13, partial [Cucurbita argyrosperma subsp. sororia] >KAG7023854.1 Cyclin-dependent protein kinase inhibitor SMR13, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 125.2 bits (313), Expect = 4.2e-25
Identity = 74/126 (58.73%), Postives = 89/126 (70.63%), Query Frame = 0


Query: 8   MASKGGEARRRARKTTTTTTTQLKKKKKNIKKIKNIKLEEEEEEIEKGSS----STAIFE 67
           MASKGG  R + +KT  T   + +K KK   + K I   +  EEIE  SS    + A  E
Sbjct: 1   MASKGGGRRNKGKKTAKTQLKKNQKIKKMKDQSKRIVSTKRTEEIEVSSSIAMAAMAAME 60

Query: 68  EESVSSSDFEQCCTPKAERFKIPEIKICPPAPKKQRLFTNCSLQRPSPIAFFASPDIELF 127
           E + SSSDFE+C TPKAERF+IPEIKICPPAPKKQR+ +NCS Q+PSPI+FFASPDIE+F
Sbjct: 61  ESASSSSDFEECSTPKAERFRIPEIKICPPAPKKQRITSNCSSQKPSPISFFASPDIEMF 120

Query: 128 FLFSSQ 130
           F  SSQ
Sbjct: 121 FFLSSQ 126

[Close]

BLAST of Lsi06G005260 vs. NCBI nr
Match: KAG7022087.1 (Cyclin-dependent protein kinase inhibitor SMR13, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 120.2 bits (300), Expect = 1.3e-23
Identity = 76/133 (57.14%), Postives = 84/133 (63.16%), Query Frame = 0


Query: 8   MASKGGEARRRARKTTTTTTTQLKKKKKNIKK-------------IKNIKLEEEEEEIEK 67
           MASKGG  RR      T  T  LKK KK +K              I + K+ EE EE   
Sbjct: 1   MASKGGRTRR-----GTNPTPPLKKTKKKLKNSTNNGGRRRRRRIIMSSKIREEIEEAAA 60

Query: 68  GSSSTAIFEEESVSSSDFEQCCTPKAERFKIPEIKICPPAPKKQRLFTNCSLQRPSPIAF 127
            SSS     +E  SSSDFE C TPKA+RFKIPEI+ICPPAPKKQR  +NCSLQ+ SPIAF
Sbjct: 61  SSSSAMAAIDEQASSSDFEHCSTPKADRFKIPEIQICPPAPKKQRPISNCSLQKHSPIAF 120

[Close]

BLAST of Lsi06G005260 vs. NCBI nr
Match: XP_022154348.1 (cyclin-dependent protein kinase inhibitor SMR9-like [Momordica charantia])

HSP 1 Score: 119.8 bits (299), Expect = 1.8e-23
Identity = 78/126 (61.90%), Postives = 90/126 (71.43%), Query Frame = 0


Query: 8   MASKGGEARRRAR--KTTTTTTTQLKKKKKNIKKIKNIKLEEEEEE--IEKGSSSTAIFE 67
           MASKGG AR + +  K     + Q  KK+         K +E E E  +E  SSS A+ E
Sbjct: 1   MASKGGIARTKMKMSKKIKKKSPQRMKKRNPPPPSPPPKNQETETETAVELASSSAAMAE 60

Query: 68  EESVSSSDFEQCCTPKAERFKIPEIKICPPAPKKQRLFTNCS-LQRPSPIAFFASPDIEL 127
            ES+ SSD E+CCTPKAERF+IPEIKICPPAPKKQR+F+NCS LQRPSPIAFFASPDIEL
Sbjct: 61  NESM-SSDLEECCTPKAERFRIPEIKICPPAPKKQRIFSNCSNLQRPSPIAFFASPDIEL 120

Query: 128 FFLFSS 129
           FF FSS
Sbjct: 121 FFFFSS 125

[Close]

BLAST of Lsi06G005260 vs. NCBI nr
Match: XP_023530358.1 (cyclin-dependent protein kinase inhibitor SMR9-like [Cucurbita pepo subsp. pepo] >KAG6588189.1 Cyclin-dependent protein kinase inhibitor SMR13, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 119.8 bits (299), Expect = 1.8e-23
Identity = 76/134 (56.72%), Postives = 84/134 (62.69%), Query Frame = 0


Query: 8   MASKGGEARRRARKTTTTTTTQLKKKKKNIKK--------------IKNIKLEEEEEEIE 67
           MASKGG  RR      T  T  LKK KK +K               I + K+ EE EE  
Sbjct: 1   MASKGGRTRR-----GTNPTPPLKKTKKKLKNSTNNGGRRRRRRRIIMSSKIREEIEEAA 60

Query: 68  KGSSSTAIFEEESVSSSDFEQCCTPKAERFKIPEIKICPPAPKKQRLFTNCSLQRPSPIA 127
             SSS     +E  SSSDFE C TPKA+RFKIPEI+ICPPAPKKQR  +NCSLQ+ SPIA
Sbjct: 61  ASSSSAMAAIDEQASSSDFEHCSTPKADRFKIPEIQICPPAPKKQRPISNCSLQKHSPIA 120

[Close]

BLAST of Lsi06G005260 vs. TAIR 10
Match: AT3G20898.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G51355.1); Has 66 Blast hits to 66 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 66; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 69.7 bits (169), Expect = 1.9e-12
Identity = 32/51 (62.75%), Postives = 40/51 (78.43%), Query Frame = 0


Query: 75  CCTPKAERFKIPEIKICPPAPKKQRLFTNCSLQRPSPIAFFASPDIELFFL 126
           CCTPKA++ +IPE+  CPPAPKKQR+  NC L+R   I FFA P+IELFF+
Sbjct: 54  CCTPKAKKSRIPEMLTCPPAPKKQRVSKNCVLRR-RQIVFFAPPEIELFFV 103

[Close]

BLAST of Lsi06G005260 vs. TAIR 10
Match: AT1G51355.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G20898.1); Has 52 Blast hits to 52 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 59.3 bits (142), Expect = 2.6e-09
Identity = 48/121 (39.67%), Postives = 71/121 (58.68%), Query Frame = 0


Query: 8   MASKGGEARRRARKTTTTTTTQLKKKKKNIKKIKNIKLEEEEEEIEKGSSSTAIFEEESV 67
           MASKG   ++  R+TTT      +++K++  K  +       +     S+ST+     + 
Sbjct: 1   MASKG---KKPLRRTTT------RRRKRSHFKNPSPPCSINSDVTSTSSTSTSPTSTATP 60

Query: 68  SSSDFEQ-CCTPKAERFKIPEIKICPPAPKKQRLFTNCSLQRPSPIAFFASPDIELFFLF 127
           S    E  CCTP  E+ +IPE+  CPPAPKKQ++  NC+L+R   IAFFA PD+ELFF+F
Sbjct: 61  SPVSAESGCCTP--EKSRIPEMLTCPPAPKKQKVAQNCALRR-RQIAFFAPPDVELFFVF 109

[Close]

BLAST of Lsi06G005260 vs. TAIR 10
Match: AT1G60783.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G10690.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 46.6 bits (109), Expect = 1.8e-05
Identity = 25/63 (39.68%), Postives = 38/63 (60.32%), Query Frame = 0


Query: 66  SVSSSDFEQCC--TPKAERFKIPEIKICPPAPKKQRLFTNCSLQRPSPIAFFASPDIELF 125
           +VS+++ E  C  TP A+  +IP +  CPPAPKK++L    S     P  FF+ PD+E  
Sbjct: 44  AVSNTEDEDLCPTTPTADSVRIPTVIPCPPAPKKRKLTLKVSY---GPREFFSPPDLETV 103

Query: 126 FLF 127
           F++
Sbjct: 104 FIY 103

The following BLAST results are available for this feature:

BLAST of Lsi06G005260 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4IWB3	2.7e-11	62.75	Cyclin-dependent protein kinase inhibitor SMR13 OS=Arabidopsis thaliana OX=3702 ...	[more]
Q3ECS5	3.7e-08	39.67	Cyclin-dependent protein kinase inhibitor SMR9 OS=Arabidopsis thaliana OX=3702 G...	[more]
Q1G3Y4	2.5e-04	39.68	Cyclin-dependent protein kinase inhibitor SMR15 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of Lsi06G005260 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0M041	8.5e-32	71.85	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G613590 PE=4 SV=1	[more]
A0A6J1DK32	8.5e-24	61.90	cyclin-dependent protein kinase inhibitor SMR9-like OS=Momordica charantia OX=36...	[more]
B9GF02	1.4e-13	46.67	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_001G257700 PE=4 ...	[more]
A0A6M2EGF4	1.8e-13	46.28	Uncharacterized protein OS=Populus davidiana OX=266767 PE=4 SV=1	[more]
A0A2K1Z353	5.2e-13	46.28	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_009G053000 PE=4 ...	[more]

BLAST of Lsi06G005260 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN66487.1	1.7e-31	71.85	hypothetical protein Csa_006949 [Cucumis sativus]	[more]
KAG6590203.1	4.2e-25	58.73	Cyclin-dependent protein kinase inhibitor SMR13, partial [Cucurbita argyrosperma...	[more]
KAG7022087.1	1.3e-23	57.14	Cyclin-dependent protein kinase inhibitor SMR13, partial [Cucurbita argyrosperma...	[more]
XP_022154348.1	1.8e-23	61.90	cyclin-dependent protein kinase inhibitor SMR9-like [Momordica charantia]	[more]
XP_023530358.1	1.8e-23	56.72	cyclin-dependent protein kinase inhibitor SMR9-like [Cucurbita pepo subsp. pepo]...	[more]

BLAST of Lsi06G005260 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G20898.1	1.9e-12	62.75	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G51355.1	2.6e-09	39.67	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G60783.1	1.8e-05	39.68	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 30..51
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..33
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21
None	No IPR available	PANTHER	PTHR33142:SF75	SUBFAMILY NOT NAMED	coord: 17..127
IPR040389	Cyclin-dependent protein kinase inhibitor SMR	PANTHER	PTHR33142	CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR SMR13	coord: 17..127

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi06G005260.1	Lsi06G005260.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045839	negative regulation of mitotic nuclear division
biological_process	GO:0032875	regulation of DNA endoreduplication
cellular_component	GO:0005634	nucleus