Lsi06G005250 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi06G005250
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	chaperonin-like RbcX protein 2, chloroplastic
Location	chr06: 6431414 .. 6435476 (-)
RNA-Seq Expression	Lsi06G005250
Synteny	Lsi06G005250

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAACGAACCTTCGACATAAAGCATATGACCATGAGGAAGTTTGATTTCCAACTTCAAATGGTTAGAAAACCCACCAAATTCAAGAAACCGTCCAGATGAATTCGAGCATGAAAACTAAAATATCTAAGATTGAAGCTTTATTTGGGGAAAAAAATGAAAATATTTCGAAAGCTTTTTGAGCTGGAGAATTTTGGACCTCACCAAATTATCTGGTTAAGATTCATCCAACTTCAAATCTCCCACAGCTCCCCACTTTCCTCCTTTCCCTCACATCTTCCTCCAGCCAAAATAACAATCTAAGAGCTCTAATCTCCAGCTTCCTCACATACCCATTTCAAATCTCTGGCTGAAAATAATTGAAGGGGTTTCATTTTGTTTCTCAAATCGACTCACAAACGAGGGGGGTTACTTGGATTGGCGTATTTCCTCTGGTTTTAGCTTTCTAAAAGGATGGTGGGAGCTTTATCTGTGGTGGGTTCTTCAGTGGTGGACTCTCATTCTTCCCCATGTTTGTGTTTGGATGCTTTGCCCACAACCAGCATCAATCTCAAAAGTTGTGGGGATTTTGTAATGAAAAAGAATTCAATGGGTCGAAAGCGTATGCTAAAACCAAAGCACTTGGATCTAAGCAGCTCGTTCGTCGATAATGGCCGGGAGTGGCTGCTTTCGGCGGATATGATAAATAGGAGTTCAAGGAAGCAGCACAAGAACAGAAGACTTGTGGTTGTTGATGAACTTGGGGGACAGTATGAAGATAACTTTGACGATGTTAAAATGGTAAGAATGTGAATTTGGAAATTAGTATTCATCTGTATACTTAAGAATGTGAATTTAGATAGGTATTTAAGCATGTTTTGGTAGTTTCTTGTGACATTGTGTTGCTGAAATGTATATTACTGGGACAAGAAATCCCATGTAGCTTAATGAACGTTTTAAGTCTGATTCATAAGTGATTTGACTGTGTGGTTCTAGCGTTGTGTAGGATTTAGAGTTATTTTTCATGTTGATAGGACATATTTTTTGGTACTTTGGAGATTATAGTTCTTGGAAGGCTTCATTTTAGTTCCGAAATGATTTGTTTGCAATTCATCTACGCTACGAAGTCTTAGCTGTTCATGTTTCTTTCTAGTTCCTTGATTCTTTTACTATGTGGATAAACATTAATGATATAGAACAACACAACAATTTTTGTCCTAACAATGTGATTCAGATGTAGATGGGGCTCTTAGCATAGGAAAATTGTGGGGAAATTGTGAAAATCCTTTCTTCGAAATGATCACGTGAAGATTTGGCAGAGTGCTAAGGAAGTTGGCCTTTCTACTAATACTCCTAAGGCATGCTAGAATGTAGAGTCACAGCACTAGGACATATGTTCTCTTGCTTGCTAGTGCTTTCAAAAATTGCAGGCCATTTATTCTGGACTATAGTAAGCTAGCTGGAAATGACTTCTTGGATGCTGTGGACTTGGTTGACCATAACAAATGGTTTTAGAGCCAAAATTTTGGTTAAACCATGGTTAACAGGAATTTCTGGCTTATGTAATAGGGAGTGTGTTAACATAAATACGGCATAAAGAAGTAATACAAAACAAAAATGTGTAAACTGTAAAAGATTGTCCCACAATAGCACTTCCACATATTAACTCTACCAAAAGACCTATTACTAGAATAGCTTTCAATACACGAATTACGATTTTGACTGCCCAACGACGATAGAAGTCACATTGGTCAATACAGCCATAATCACACTTGTAACTCAAGTCGATTCATGAGGTTTTTGAAAGCCCCCAGTGAGATACACATGCAATACAAAAACCAACAGGTTGATGCAAGAGGCAACTGAAAATGTTTTTTTTTTATGCTTATGAGATATGCTTGAGACTTAAGTTTTCCATTAAGTTTGTTCTAGTCAAGTCCTGCATTTTCAAATTGTTGGTTGATACTTCTTTTTAGTACGACTTTAATGATTTTCCAGTTTCTTGAGCTTTATCCTTCTCCCATCCTTTGCTAATTCATTTGCCTACGGATTAATTAGTGAACTGACTGAGATTTCTCTGGCTGCAGCAAATACTTAATTATTTTACATACAAGGCTGTGAGGACTGTTATGAACCAGCTGTATGAAATGAACCCCCCACAGTACAGGTGGCTTTACGAGTACGTGCTATCTTTTGTTGCACTCTGAGACTGGTTATTTTTCTGTGTGTTACAGTAACTGGGGTCAGTTTACAATGCTGGTTTGATATAGATGCATGAAATAGTTGTAGTATCTTATATCATGCAAGCTCAAGTTTAGCTGTCAAATTATTTCATGTTAGTATCGACGTGCTCTTAAATTTTGATTCAGATGTTTTCTTATTCACAGTTTCGTGTTATCCAACAAGCCAACAGATGGAAAACATTTCATCCGCAGGCTTGTAAAGGTACTTCTTAAAATTCATACCTACTTCATGACTTGGATACTTTTTTGTATGAGAAACAAGTAACCTTCATTTCATTAATAAGAGGAAATTACGAAAGAGGCACAAATGATCATAAGAATTACAAAAAATATTGCCAATGAATAGAGAGAGAAGTAAGGTGTGTTCAAAAAGAGTTGAAATCCGTAGCTTTTTCCTTGAAGATGCGACGGTTTTTCTTGAGCCATGATAACCAAAGGATGGCTTTGTTAAGAGAGACCCATAACCTCTTTACTAATCTATGACTTGGATACTATTTAGTTGTGCCGAGAAGCAAAACCTGTCCTAATCTAAGATTTTTTCACTATTGATTTTAGGGCATGTTATATTTTGGAGTGATATTGAATGATTAAAGGCATGAGTGTGGCAAAAGTGATTTTGACCATTTCAAAATCACTCCTAAACATATGATTAGACTCTCACTATAACTTGTTCTAAAGAGCAAAGATGTCATGTCTATTTTTTAGCATTTGGCTATCTCAGTAGAAAAGAAAGGCCTACTGTAGCACACACAGATGTTACAAAATATGATCCGTTTCTCTAGTAATACAGTGGAAAAACAGTTGTTCCAAGTGTATATAAAGTTCCATAACTTGCTGACAAATTAAAAGTAGGAAAAAGAGCTAAAGTCGAAGAATTGTTTATAGAATGGAGGTTTAGTATGTGAAAAATGAATATACATATTGGAGAGAGAAAAAATTGTGGGCCTCACAATTGCATGCCGAGTTCTCAAAGGCTTGTGCCTAAGTGAGGTCATCTTGCTTGACACAAGGTCGGCTTAAATACACAGCTAAATCTGGATCCCAAATATTCCAGTTTAGAGTTTGGACATCAAGATTTAAGGTCATTTATCGTGCGGTAGATGTGGGATGGTTGGCCAATGGCCACAATCACAAAACTTGGTGCCAACCACTACTGACGACGAATTGAACACATGCATGTAAAAGAAATCATTTTAGCTGTGTATTTAAGCTTGACACAAGGTCGGCTTAAATACACAGCTAAAATGATTTCTTTTACTTCTGGATCCCAAACATTCCAGTTTAGAGTTAGGACACCAAGATTTAAGGTCATTTACGGTCTCGAGGCACGCCTTGTAAAATAGTGTTTTACTACACCTGAATCATTGTTTTCCTAATGGACAGGAACAGCAAGATCTTGCTGAAAGAGTAATGATCACACGTCTCCACCTCTATGGCAAATGGGTGAAGGTATTTCTATAATTGTAGTATTCCTTTCATTCAATACAGTATTTTCATTTTGTTATGGGAAGACCAGTATTTATATGGATGGAAACAAAAGTTTATTTCTTCTGTGGTGTAGAAATGTAACCATGCTGAAATATACCAAGAGATCTCGGACGAAAACGTGGAATTAATGCGAGAACGACTTATGCAGACTGTTATATGGCCTTCAGATGACACAAACACAGAAAAGATTGGCTAAAGAAATATTAAGTAATTTTGAGTTCTCTCTTCCCTCGTCAATTCTTGTGTTTTGCATCCTTCAATCGTAATTAGTTTGATTGTCGAGTTGCCGATCTTATTCTTGCCGATCAAGAAGTAGTAGTTCAGTGCCGCAGTCTTTTTTTTTTTTTTTTTTTTT

mRNA sequence

AAAACGAACCTTCGACATAAAGCATATGACCATGAGGAAGTTTGATTTCCAACTTCAAATGGTTAGAAAACCCACCAAATTCAAGAAACCGTCCAGATGAATTCGAGCATGAAAACTAAAATATCTAAGATTGAAGCTTTATTTGGGGAAAAAAATGAAAATATTTCGAAAGCTTTTTGAGCTGGAGAATTTTGGACCTCACCAAATTATCTGGTTAAGATTCATCCAACTTCAAATCTCCCACAGCTCCCCACTTTCCTCCTTTCCCTCACATCTTCCTCCAGCCAAAATAACAATCTAAGAGCTCTAATCTCCAGCTTCCTCACATACCCATTTCAAATCTCTGGCTGAAAATAATTGAAGGGGTTTCATTTTGTTTCTCAAATCGACTCACAAACGAGGGGGGTTACTTGGATTGGCGTATTTCCTCTGGTTTTAGCTTTCTAAAAGGATGGTGGGAGCTTTATCTGTGGTGGGTTCTTCAGTGGTGGACTCTCATTCTTCCCCATGTTTGTGTTTGGATGCTTTGCCCACAACCAGCATCAATCTCAAAAGTTGTGGGGATTTTGTAATGAAAAAGAATTCAATGGGTCGAAAGCGTATGCTAAAACCAAAGCACTTGGATCTAAGCAGCTCGTTCGTCGATAATGGCCGGGAGTGGCTGCTTTCGGCGGATATGATAAATAGGAGTTCAAGGAAGCAGCACAAGAACAGAAGACTTGTGGTTGTTGATGAACTTGGGGGACAGTATGAAGATAACTTTGACGATGTTAAAATGCGTTGTGTAGGATTTAGAGTTATTTTTCATGTTGATAGGACATATTTTTTGCAAATACTTAATTATTTTACATACAAGGCTGTGAGGACTGTTATGAACCAGCTGTATGAAATGAACCCCCCACAGTACAGGTGGCTTTACGAGTACGAACAGCAAGATCTTGCTGAAAGAGTAATGATCACACGTCTCCACCTCTATGGCAAATGGGTGAAGAAATGTAACCATGCTGAAATATACCAAGAGATCTCGGACGAAAACGTGGAATTAATGCGAGAACGACTTATGCAGACTGTTATATGGCCTTCAGATGACACAAACACAGAAAAGATTGGCTAAAGAAATATTAAGTAATTTTGAGTTCTCTCTTCCCTCGTCAATTCTTGTGTTTTGCATCCTTCAATCGTAATTAGTTTGATTGTCGAGTTGCCGATCTTATTCTTGCCGATCAAGAAGTAGTAGTTCAGTGCCGCAGTCTTTTTTTTTTTTTTTTTTTTT

Coding sequence (CDS)

ATGGTGGGAGCTTTATCTGTGGTGGGTTCTTCAGTGGTGGACTCTCATTCTTCCCCATGTTTGTGTTTGGATGCTTTGCCCACAACCAGCATCAATCTCAAAAGTTGTGGGGATTTTGTAATGAAAAAGAATTCAATGGGTCGAAAGCGTATGCTAAAACCAAAGCACTTGGATCTAAGCAGCTCGTTCGTCGATAATGGCCGGGAGTGGCTGCTTTCGGCGGATATGATAAATAGGAGTTCAAGGAAGCAGCACAAGAACAGAAGACTTGTGGTTGTTGATGAACTTGGGGGACAGTATGAAGATAACTTTGACGATGTTAAAATGCGTTGTGTAGGATTTAGAGTTATTTTTCATGTTGATAGGACATATTTTTTGCAAATACTTAATTATTTTACATACAAGGCTGTGAGGACTGTTATGAACCAGCTGTATGAAATGAACCCCCCACAGTACAGGTGGCTTTACGAGTACGAACAGCAAGATCTTGCTGAAAGAGTAATGATCACACGTCTCCACCTCTATGGCAAATGGGTGAAGAAATGTAACCATGCTGAAATATACCAAGAGATCTCGGACGAAAACGTGGAATTAATGCGAGAACGACTTATGCAGACTGTTATATGGCCTTCAGATGACACAAACACAGAAAAGATTGGCTAA

Protein sequence

MVGALSVVGSSVVDSHSSPCLCLDALPTTSINLKSCGDFVMKKNSMGRKRMLKPKHLDLSSSFVDNGREWLLSADMINRSSRKQHKNRRLVVVDELGGQYEDNFDDVKMRCVGFRVIFHVDRTYFLQILNYFTYKAVRTVMNQLYEMNPPQYRWLYEYEQQDLAERVMITRLHLYGKWVKKCNHAEIYQEISDENVELMRERLMQTVIWPSDDTNTEKIG

Homology

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BLAST of Lsi06G005250 vs. ExPASy Swiss-Prot
Match: Q8L9X2 (Chaperonin-like RbcX protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RBCX2 PE=1 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 8.7e-50
Identity = 115/235 (48.94%), Postives = 147/235 (62.55%), Query Frame = 0


Query: 1   MVGALSVVGSSVVDSHSSPCLCLDALPTTSINLKSCGDFVMKKNSMGRKRML-KPKHLDL 60
           MV A  VVGS V+DS SSPCLCLDA  T +I                RK++L K ++L+L
Sbjct: 1   MVSAWFVVGSPVMDSSSSPCLCLDAHTTGTIR---------------RKKILGKARNLEL 60

Query: 61  SSSFVDNGREWLLSADMINRSSRKQHKNRRLVVVDELGGQYEDNFDDVKMRCVGFRVIFH 120
            SSF  +   + LS   ++R + ++ K + L+V +++ G Y+D F DV+           
Sbjct: 61  GSSFTGSRIVFRLSPKRVSRIANRKSK-KLLIVNEDVAGNYDDTFGDVQK---------- 120

Query: 121 VDRTYFLQILNYFTYKAVRTVMNQLYEMNPPQYRWLYEY------------------EQQ 180
                  QI+NYFTYKAVRTV++QLYEMNPPQY W Y +                  E Q
Sbjct: 121 -------QIVNYFTYKAVRTVLHQLYEMNPPQYTWFYNHIITNRPTDGKRFLRALGKESQ 180

Query: 181 DLAERVMITRLHLYGKWVKKCNHAEIYQEISDENVELMRERLMQTVIWPSDDTNT 217
           +LAERVMITRLHLYGKW+KKC+H +IYQEISDEN+ LMRERLM+TVIWPSDDTN+
Sbjct: 181 ELAERVMITRLHLYGKWIKKCDHGKIYQEISDENLALMRERLMETVIWPSDDTNS 202

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BLAST of Lsi06G005250 vs. ExPASy TrEMBL
Match: A0A0A0LXJ9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G613600 PE=4 SV=1)

HSP 1 Score: 364.4 bits (934), Expect = 3.4e-97
Identity = 191/239 (79.92%), Postives = 198/239 (82.85%), Query Frame = 0


Query: 1   MVGALSVVGSSVVDSHSSPCLCLDALPTTSINLKSCGDFVMKKN-SMGRKRMLKPKHLDL 60
           MVGALS+VGSSVVDSHSSPCLCLDALPTTSINLKSCGDFVMKK  S GR+R+ KPKHLDL
Sbjct: 1   MVGALSMVGSSVVDSHSSPCLCLDALPTTSINLKSCGDFVMKKKYSKGRQRLPKPKHLDL 60

Query: 61  SSSFVDNGREWLLSADMINRSSRKQHKNRRLVVVDELGGQYEDNFDDVKMRCVGFRVIFH 120
           SSSFVDNGREWLLS DMINRSSRKQ KNRRL+VVDELGGQYEDNFDDVKM          
Sbjct: 61  SSSFVDNGREWLLSVDMINRSSRKQTKNRRLMVVDELGGQYEDNFDDVKM---------- 120

Query: 121 VDRTYFLQILNYFTYKAVRTVMNQLYEMNPPQYRWLYEY------------------EQQ 180
                  Q+LNYFTYKAVRTVMNQLYEMNPPQYRWLY++                  EQQ
Sbjct: 121 -------QMLNYFTYKAVRTVMNQLYEMNPPQYRWLYDFVLNNKPTDGKHFIRRLVKEQQ 180

Query: 181 DLAERVMITRLHLYGKWVKKCNHAEIYQEISDENVELMRERLMQTVIWPSDDTNTEKIG 221
           DLAERVMITRLHLYGKWVKKCNHAEIYQEISDENVELMRERLMQTVIWPSDDTNTEKIG
Sbjct: 181 DLAERVMITRLHLYGKWVKKCNHAEIYQEISDENVELMRERLMQTVIWPSDDTNTEKIG 222

[Close]

BLAST of Lsi06G005250 vs. ExPASy TrEMBL
Match: A0A5D3D5P8 (RcbX domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold204G00500 PE=4 SV=1)

HSP 1 Score: 364.0 bits (933), Expect = 4.4e-97
Identity = 191/239 (79.92%), Postives = 198/239 (82.85%), Query Frame = 0


Query: 1   MVGALSVVGSSVVDSHSSPCLCLDALPTTSINLKSCGDFVMKKN-SMGRKRMLKPKHLDL 60
           MVGALS+VGSSVVDSH+SPCLCLDALPTTSINLKSCGDFVMKK  SMGR+R+ KPKHLDL
Sbjct: 1   MVGALSMVGSSVVDSHTSPCLCLDALPTTSINLKSCGDFVMKKKYSMGRQRLPKPKHLDL 60

Query: 61  SSSFVDNGREWLLSADMINRSSRKQHKNRRLVVVDELGGQYEDNFDDVKMRCVGFRVIFH 120
           SSSFVDNG EWLLS DMINRSSRKQ KNRRLVVVDELGGQYEDNFDDVKM          
Sbjct: 61  SSSFVDNGLEWLLSVDMINRSSRKQTKNRRLVVVDELGGQYEDNFDDVKM---------- 120

Query: 121 VDRTYFLQILNYFTYKAVRTVMNQLYEMNPPQYRWLYEY------------------EQQ 180
                  Q+LNYFTYKAVRTVMNQLYEMNPPQYRWLY++                  EQQ
Sbjct: 121 -------QMLNYFTYKAVRTVMNQLYEMNPPQYRWLYDFVLNNKPTDGKHFIRRLVKEQQ 180

Query: 181 DLAERVMITRLHLYGKWVKKCNHAEIYQEISDENVELMRERLMQTVIWPSDDTNTEKIG 221
           DLAERVMITRLHLYGKWVKKCNHAEIYQEISDENVELMRERLMQTVIWPSDDTNTEKIG
Sbjct: 181 DLAERVMITRLHLYGKWVKKCNHAEIYQEISDENVELMRERLMQTVIWPSDDTNTEKIG 222

[Close]

BLAST of Lsi06G005250 vs. ExPASy TrEMBL
Match: A0A1S3BNK3 (uncharacterized protein LOC103492031 OS=Cucumis melo OX=3656 GN=LOC103492031 PE=4 SV=1)

HSP 1 Score: 364.0 bits (933), Expect = 4.4e-97
Identity = 191/239 (79.92%), Postives = 198/239 (82.85%), Query Frame = 0


Query: 1   MVGALSVVGSSVVDSHSSPCLCLDALPTTSINLKSCGDFVMKKN-SMGRKRMLKPKHLDL 60
           MVGALS+VGSSVVDSH+SPCLCLDALPTTSINLKSCGDFVMKK  SMGR+R+ KPKHLDL
Sbjct: 1   MVGALSMVGSSVVDSHTSPCLCLDALPTTSINLKSCGDFVMKKKYSMGRQRLPKPKHLDL 60

Query: 61  SSSFVDNGREWLLSADMINRSSRKQHKNRRLVVVDELGGQYEDNFDDVKMRCVGFRVIFH 120
           SSSFVDNG EWLLS DMINRSSRKQ KNRRLVVVDELGGQYEDNFDDVKM          
Sbjct: 61  SSSFVDNGLEWLLSVDMINRSSRKQTKNRRLVVVDELGGQYEDNFDDVKM---------- 120

Query: 121 VDRTYFLQILNYFTYKAVRTVMNQLYEMNPPQYRWLYEY------------------EQQ 180
                  Q+LNYFTYKAVRTVMNQLYEMNPPQYRWLY++                  EQQ
Sbjct: 121 -------QMLNYFTYKAVRTVMNQLYEMNPPQYRWLYDFVLNNKPTDGKHFIRRLVKEQQ 180

Query: 181 DLAERVMITRLHLYGKWVKKCNHAEIYQEISDENVELMRERLMQTVIWPSDDTNTEKIG 221
           DLAERVMITRLHLYGKWVKKCNHAEIYQEISDENVELMRERLMQTVIWPSDDTNTEKIG
Sbjct: 181 DLAERVMITRLHLYGKWVKKCNHAEIYQEISDENVELMRERLMQTVIWPSDDTNTEKIG 222

[Close]

BLAST of Lsi06G005250 vs. ExPASy TrEMBL
Match: A0A6J1EJF5 (chaperonin-like RbcX protein 2, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111433858 PE=4 SV=1)

HSP 1 Score: 359.0 bits (920), Expect = 1.4e-95
Identity = 186/238 (78.15%), Postives = 195/238 (81.93%), Query Frame = 0


Query: 1   MVGALSVVGSSVVDSHSSPCLCLDALPTTSINLKSCGDFVMKKNSMGRKRMLKPKHLDLS 60
           MV  LSVVGSSVVDSH+SPCLCLD LPTTSINLKS GDFVMK+NSMGRKR+ KPKHLDLS
Sbjct: 1   MVRGLSVVGSSVVDSHTSPCLCLDVLPTTSINLKSSGDFVMKRNSMGRKRLPKPKHLDLS 60

Query: 61  SSFVDNGREWLLSADMINRSSRKQHKNRRLVVVDELGGQYEDNFDDVKMRCVGFRVIFHV 120
           SSFVD GREWLLSADMINRSSRKQHKNRRLVV+DELGGQYED FDDVKM           
Sbjct: 61  SSFVDAGREWLLSADMINRSSRKQHKNRRLVVIDELGGQYEDTFDDVKM----------- 120

Query: 121 DRTYFLQILNYFTYKAVRTVMNQLYEMNPPQYRWLYEY------------------EQQD 180
                 QILNYFTYKAVRTVMNQLYEMNPP YRWLY++                  E+QD
Sbjct: 121 ------QILNYFTYKAVRTVMNQLYEMNPPTYRWLYDFVLSNKPSDGKHFIRTLVKERQD 180

Query: 181 LAERVMITRLHLYGKWVKKCNHAEIYQEISDENVELMRERLMQTVIWPSDDTNTEKIG 221
           LAERVMITRLHLYGKWVKKCNHAEIYQEIS+ENVELMRERLM+TVIWPSDDTNTEKIG
Sbjct: 181 LAERVMITRLHLYGKWVKKCNHAEIYQEISNENVELMRERLMETVIWPSDDTNTEKIG 221

[Close]

BLAST of Lsi06G005250 vs. ExPASy TrEMBL
Match: A0A6J1HZ31 (chaperonin-like RbcX protein 2, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111467533 PE=4 SV=1)

HSP 1 Score: 357.8 bits (917), Expect = 3.2e-95
Identity = 186/238 (78.15%), Postives = 195/238 (81.93%), Query Frame = 0


Query: 1   MVGALSVVGSSVVDSHSSPCLCLDALPTTSINLKSCGDFVMKKNSMGRKRMLKPKHLDLS 60
           MV  LSVVGSSVVDSH+SPCLCLD LPTTSINLKS GDFVMKK+SMGRKR+ KPKHLDLS
Sbjct: 1   MVRGLSVVGSSVVDSHTSPCLCLDILPTTSINLKSSGDFVMKKHSMGRKRLPKPKHLDLS 60

Query: 61  SSFVDNGREWLLSADMINRSSRKQHKNRRLVVVDELGGQYEDNFDDVKMRCVGFRVIFHV 120
           SSFVD GREWLLSADMINRSSRKQHKNRRLVV+DELGGQYED FDDVKM           
Sbjct: 61  SSFVDAGREWLLSADMINRSSRKQHKNRRLVVIDELGGQYEDTFDDVKM----------- 120

Query: 121 DRTYFLQILNYFTYKAVRTVMNQLYEMNPPQYRWLYEY------------------EQQD 180
                 QILNYFTYKAVRTVMNQLYEMNPP YRWLY++                  E+QD
Sbjct: 121 ------QILNYFTYKAVRTVMNQLYEMNPPTYRWLYDFVLSNKPSDGKHFIRTLVKERQD 180

Query: 181 LAERVMITRLHLYGKWVKKCNHAEIYQEISDENVELMRERLMQTVIWPSDDTNTEKIG 221
           LAERVMITRLHLYGKWVKKCNHAEIYQEIS+ENVELMRERLM+TVIWPSDDTNTEKIG
Sbjct: 181 LAERVMITRLHLYGKWVKKCNHAEIYQEISNENVELMRERLMETVIWPSDDTNTEKIG 221

[Close]

BLAST of Lsi06G005250 vs. NCBI nr
Match: XP_038879928.1 (chaperonin-like RbcX protein 2, chloroplastic isoform X1 [Benincasa hispida])

HSP 1 Score: 370.9 bits (951), Expect = 7.4e-99
Identity = 195/239 (81.59%), Postives = 199/239 (83.26%), Query Frame = 0


Query: 1   MVGALSVVGSSVVDSHSSPCLCLDALPTTSINLKSCGDFVM-KKNSMGRKRMLKPKHLDL 60
           MVGALSVVGSSVVDSH+SPCLCLDALPTTSINLKSCGDFVM KKN MGR R+ K KHLDL
Sbjct: 1   MVGALSVVGSSVVDSHTSPCLCLDALPTTSINLKSCGDFVMKKKNLMGRNRLPKSKHLDL 60

Query: 61  SSSFVDNGREWLLSADMINRSSRKQHKNRRLVVVDELGGQYEDNFDDVKMRCVGFRVIFH 120
           SSSFVDNGREWLLSADMINRSSRKQHKNRRLVVVDELGGQYEDNFDDVKM          
Sbjct: 61  SSSFVDNGREWLLSADMINRSSRKQHKNRRLVVVDELGGQYEDNFDDVKM---------- 120

Query: 121 VDRTYFLQILNYFTYKAVRTVMNQLYEMNPPQYRWLYEY------------------EQQ 180
                  QILNYFTYKAVRTVMNQLYEMNPPQYRWLY++                  EQQ
Sbjct: 121 -------QILNYFTYKAVRTVMNQLYEMNPPQYRWLYDFVLSNKPTDGKYFIRRLVKEQQ 180

Query: 181 DLAERVMITRLHLYGKWVKKCNHAEIYQEISDENVELMRERLMQTVIWPSDDTNTEKIG 221
           DLAERVMITRLHLYGKWVKKCNHAEIYQEISDENVELMRERLMQTVIWPSDDTNTEKIG
Sbjct: 181 DLAERVMITRLHLYGKWVKKCNHAEIYQEISDENVELMRERLMQTVIWPSDDTNTEKIG 222

[Close]

BLAST of Lsi06G005250 vs. NCBI nr
Match: XP_004139034.1 (chaperonin-like RbcX protein 2, chloroplastic [Cucumis sativus] >KGN66488.1 hypothetical protein Csa_007379 [Cucumis sativus])

HSP 1 Score: 364.4 bits (934), Expect = 7.0e-97
Identity = 191/239 (79.92%), Postives = 198/239 (82.85%), Query Frame = 0


Query: 1   MVGALSVVGSSVVDSHSSPCLCLDALPTTSINLKSCGDFVMKKN-SMGRKRMLKPKHLDL 60
           MVGALS+VGSSVVDSHSSPCLCLDALPTTSINLKSCGDFVMKK  S GR+R+ KPKHLDL
Sbjct: 1   MVGALSMVGSSVVDSHSSPCLCLDALPTTSINLKSCGDFVMKKKYSKGRQRLPKPKHLDL 60

Query: 61  SSSFVDNGREWLLSADMINRSSRKQHKNRRLVVVDELGGQYEDNFDDVKMRCVGFRVIFH 120
           SSSFVDNGREWLLS DMINRSSRKQ KNRRL+VVDELGGQYEDNFDDVKM          
Sbjct: 61  SSSFVDNGREWLLSVDMINRSSRKQTKNRRLMVVDELGGQYEDNFDDVKM---------- 120

Query: 121 VDRTYFLQILNYFTYKAVRTVMNQLYEMNPPQYRWLYEY------------------EQQ 180
                  Q+LNYFTYKAVRTVMNQLYEMNPPQYRWLY++                  EQQ
Sbjct: 121 -------QMLNYFTYKAVRTVMNQLYEMNPPQYRWLYDFVLNNKPTDGKHFIRRLVKEQQ 180

Query: 181 DLAERVMITRLHLYGKWVKKCNHAEIYQEISDENVELMRERLMQTVIWPSDDTNTEKIG 221
           DLAERVMITRLHLYGKWVKKCNHAEIYQEISDENVELMRERLMQTVIWPSDDTNTEKIG
Sbjct: 181 DLAERVMITRLHLYGKWVKKCNHAEIYQEISDENVELMRERLMQTVIWPSDDTNTEKIG 222

[Close]

BLAST of Lsi06G005250 vs. NCBI nr
Match: XP_008450421.1 (PREDICTED: uncharacterized protein LOC103492031 [Cucumis melo] >TYK18852.1 RcbX domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 364.0 bits (933), Expect = 9.1e-97
Identity = 191/239 (79.92%), Postives = 198/239 (82.85%), Query Frame = 0


Query: 1   MVGALSVVGSSVVDSHSSPCLCLDALPTTSINLKSCGDFVMKKN-SMGRKRMLKPKHLDL 60
           MVGALS+VGSSVVDSH+SPCLCLDALPTTSINLKSCGDFVMKK  SMGR+R+ KPKHLDL
Sbjct: 1   MVGALSMVGSSVVDSHTSPCLCLDALPTTSINLKSCGDFVMKKKYSMGRQRLPKPKHLDL 60

Query: 61  SSSFVDNGREWLLSADMINRSSRKQHKNRRLVVVDELGGQYEDNFDDVKMRCVGFRVIFH 120
           SSSFVDNG EWLLS DMINRSSRKQ KNRRLVVVDELGGQYEDNFDDVKM          
Sbjct: 61  SSSFVDNGLEWLLSVDMINRSSRKQTKNRRLVVVDELGGQYEDNFDDVKM---------- 120

Query: 121 VDRTYFLQILNYFTYKAVRTVMNQLYEMNPPQYRWLYEY------------------EQQ 180
                  Q+LNYFTYKAVRTVMNQLYEMNPPQYRWLY++                  EQQ
Sbjct: 121 -------QMLNYFTYKAVRTVMNQLYEMNPPQYRWLYDFVLNNKPTDGKHFIRRLVKEQQ 180

Query: 181 DLAERVMITRLHLYGKWVKKCNHAEIYQEISDENVELMRERLMQTVIWPSDDTNTEKIG 221
           DLAERVMITRLHLYGKWVKKCNHAEIYQEISDENVELMRERLMQTVIWPSDDTNTEKIG
Sbjct: 181 DLAERVMITRLHLYGKWVKKCNHAEIYQEISDENVELMRERLMQTVIWPSDDTNTEKIG 222

[Close]

BLAST of Lsi06G005250 vs. NCBI nr
Match: XP_038879929.1 (chaperonin-like RbcX protein 2, chloroplastic isoform X2 [Benincasa hispida])

HSP 1 Score: 359.4 bits (921), Expect = 2.2e-95
Identity = 191/235 (81.28%), Postives = 195/235 (82.98%), Query Frame = 0


Query: 1   MVGALSVVGSSVVDSHSSPCLCLDALPTTSINLKSCGDFVM-KKNSMGRKRMLKPKHLDL 60
           MVGALSVVGSSVVDSH+SPCLCLDALPTTSINLKSCGDFVM KKN MGR R+ K KHLDL
Sbjct: 1   MVGALSVVGSSVVDSHTSPCLCLDALPTTSINLKSCGDFVMKKKNLMGRNRLPKSKHLDL 60

Query: 61  SSSFVDNGREWLLSADMINRSSRKQHKNRRLVVVDELGGQYEDNFDDVKMRCVGFRVIFH 120
           SSSFVDNGREWLLSADMINRSSRKQHKNRRLVVVDELGGQYEDNFDDVKM          
Sbjct: 61  SSSFVDNGREWLLSADMINRSSRKQHKNRRLVVVDELGGQYEDNFDDVKM---------- 120

Query: 121 VDRTYFLQILNYFTYKAVRTVMNQLYEMNPPQYRWLYE--------------YEQQDLAE 180
                  QILNYFTYKAVRTVMNQLYEMNPPQY ++                 EQQDLAE
Sbjct: 121 -------QILNYFTYKAVRTVMNQLYEMNPPQYSFVLSNKPTDGKYFIRRLVKEQQDLAE 180

Query: 181 RVMITRLHLYGKWVKKCNHAEIYQEISDENVELMRERLMQTVIWPSDDTNTEKIG 221
           RVMITRLHLYGKWVKKCNHAEIYQEISDENVELMRERLMQTVIWPSDDTNTEKIG
Sbjct: 181 RVMITRLHLYGKWVKKCNHAEIYQEISDENVELMRERLMQTVIWPSDDTNTEKIG 218

[Close]

BLAST of Lsi06G005250 vs. NCBI nr
Match: XP_022926878.1 (chaperonin-like RbcX protein 2, chloroplastic [Cucurbita moschata] >KAG7022086.1 Chaperonin-like RbcX protein 2, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 359.0 bits (920), Expect = 2.9e-95
Identity = 186/238 (78.15%), Postives = 195/238 (81.93%), Query Frame = 0


Query: 1   MVGALSVVGSSVVDSHSSPCLCLDALPTTSINLKSCGDFVMKKNSMGRKRMLKPKHLDLS 60
           MV  LSVVGSSVVDSH+SPCLCLD LPTTSINLKS GDFVMK+NSMGRKR+ KPKHLDLS
Sbjct: 1   MVRGLSVVGSSVVDSHTSPCLCLDVLPTTSINLKSSGDFVMKRNSMGRKRLPKPKHLDLS 60

Query: 61  SSFVDNGREWLLSADMINRSSRKQHKNRRLVVVDELGGQYEDNFDDVKMRCVGFRVIFHV 120
           SSFVD GREWLLSADMINRSSRKQHKNRRLVV+DELGGQYED FDDVKM           
Sbjct: 61  SSFVDAGREWLLSADMINRSSRKQHKNRRLVVIDELGGQYEDTFDDVKM----------- 120

Query: 121 DRTYFLQILNYFTYKAVRTVMNQLYEMNPPQYRWLYEY------------------EQQD 180
                 QILNYFTYKAVRTVMNQLYEMNPP YRWLY++                  E+QD
Sbjct: 121 ------QILNYFTYKAVRTVMNQLYEMNPPTYRWLYDFVLSNKPSDGKHFIRTLVKERQD 180

Query: 181 LAERVMITRLHLYGKWVKKCNHAEIYQEISDENVELMRERLMQTVIWPSDDTNTEKIG 221
           LAERVMITRLHLYGKWVKKCNHAEIYQEIS+ENVELMRERLM+TVIWPSDDTNTEKIG
Sbjct: 181 LAERVMITRLHLYGKWVKKCNHAEIYQEISNENVELMRERLMETVIWPSDDTNTEKIG 221

[Close]

BLAST of Lsi06G005250 vs. TAIR 10
Match: AT5G19855.1 (Chaperonin-like RbcX protein )

HSP 1 Score: 198.4 bits (503), Expect = 6.2e-51
Identity = 115/235 (48.94%), Postives = 147/235 (62.55%), Query Frame = 0


Query: 1   MVGALSVVGSSVVDSHSSPCLCLDALPTTSINLKSCGDFVMKKNSMGRKRML-KPKHLDL 60
           MV A  VVGS V+DS SSPCLCLDA  T +I                RK++L K ++L+L
Sbjct: 1   MVSAWFVVGSPVMDSSSSPCLCLDAHTTGTIR---------------RKKILGKARNLEL 60

Query: 61  SSSFVDNGREWLLSADMINRSSRKQHKNRRLVVVDELGGQYEDNFDDVKMRCVGFRVIFH 120
            SSF  +   + LS   ++R + ++ K + L+V +++ G Y+D F DV+           
Sbjct: 61  GSSFTGSRIVFRLSPKRVSRIANRKSK-KLLIVNEDVAGNYDDTFGDVQK---------- 120

Query: 121 VDRTYFLQILNYFTYKAVRTVMNQLYEMNPPQYRWLYEY------------------EQQ 180
                  QI+NYFTYKAVRTV++QLYEMNPPQY W Y +                  E Q
Sbjct: 121 -------QIVNYFTYKAVRTVLHQLYEMNPPQYTWFYNHIITNRPTDGKRFLRALGKESQ 180

Query: 181 DLAERVMITRLHLYGKWVKKCNHAEIYQEISDENVELMRERLMQTVIWPSDDTNT 217
           +LAERVMITRLHLYGKW+KKC+H +IYQEISDEN+ LMRERLM+TVIWPSDDTN+
Sbjct: 181 ELAERVMITRLHLYGKWIKKCDHGKIYQEISDENLALMRERLMETVIWPSDDTNS 202

The following BLAST results are available for this feature:

BLAST of Lsi06G005250 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8L9X2	8.7e-50	48.94	Chaperonin-like RbcX protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN...	[more]

BLAST of Lsi06G005250 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LXJ9	3.4e-97	79.92	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G613600 PE=4 SV=1	[more]
A0A5D3D5P8	4.4e-97	79.92	RcbX domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A1S3BNK3	4.4e-97	79.92	uncharacterized protein LOC103492031 OS=Cucumis melo OX=3656 GN=LOC103492031 PE=...	[more]
A0A6J1EJF5	1.4e-95	78.15	chaperonin-like RbcX protein 2, chloroplastic OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A6J1HZ31	3.2e-95	78.15	chaperonin-like RbcX protein 2, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC...	[more]

BLAST of Lsi06G005250 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038879928.1	7.4e-99	81.59	chaperonin-like RbcX protein 2, chloroplastic isoform X1 [Benincasa hispida]	[more]
XP_004139034.1	7.0e-97	79.92	chaperonin-like RbcX protein 2, chloroplastic [Cucumis sativus] >KGN66488.1 hypo...	[more]
XP_008450421.1	9.1e-97	79.92	PREDICTED: uncharacterized protein LOC103492031 [Cucumis melo] >TYK18852.1 RcbX ...	[more]
XP_038879929.1	2.2e-95	81.28	chaperonin-like RbcX protein 2, chloroplastic isoform X2 [Benincasa hispida]	[more]
XP_022926878.1	2.9e-95	78.15	chaperonin-like RbcX protein 2, chloroplastic [Cucurbita moschata] >KAG7022086.1...	[more]

BLAST of Lsi06G005250 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G19855.1	6.2e-51	48.94	Chaperonin-like RbcX protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038052	Chaperonin-like RbcX superfamily	GENE3D	1.10.1200.210		coord: 123..217 e-value: 3.5E-27 score: 96.8
IPR038052	Chaperonin-like RbcX superfamily	SUPERFAMILY	158615	RbcX-like	coord: 127..217
IPR003435	Chaperonin-like RbcX	PFAM	PF02341	RcbX	coord: 128..161 e-value: 1.2E-8 score: 35.1
IPR003435	Chaperonin-like RbcX	PANTHER	PTHR33791	FAMILY NOT NAMED	coord: 1..158
IPR003435	Chaperonin-like RbcX	PANTHER	PTHR33791	FAMILY NOT NAMED	coord: 159..220
None	No IPR available	PANTHER	PTHR33791:SF1	CHAPERONIN-LIKE RBCX PROTEIN 2, CHLOROPLASTIC	coord: 159..220
None	No IPR available	PANTHER	PTHR33791:SF1	CHAPERONIN-LIKE RBCX PROTEIN 2, CHLOROPLASTIC	coord: 1..158

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi06G005250.1	Lsi06G005250.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015977	carbon fixation
biological_process	GO:0015979	photosynthesis
biological_process	GO:0006457	protein folding
biological_process	GO:0110102	ribulose bisphosphate carboxylase complex assembly
molecular_function	GO:0044183	protein folding chaperone