Lsi06G005200 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi06G005200
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	PRELI/MSF1 domain-containing protein
Location	chr06: 6308555 .. 6310727 (-)
RNA-Seq Expression	Lsi06G005200
Synteny	Lsi06G005200

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTGCAATGATGTTTGTCTTTAGCTGCAATGGCCAAGGGTAGTTTCGTCATTAAAAAAAATAATAAATAAATAAATAAAAACTACTCCATTTAAAGTCGCTCCAATTGTAATGGTCTTGCTCTTGCTCAAACCTCTGATTTACCAAGGATTTTCTTTCCTTTTCTGGTCAGTTTTGATTTTGGAGATTGAGATCTTGACTCATCGGAACCGCCTTCTTCCCCCGCCGCCGAACCCCATTTTCTTTCATTTCTCAGGTGAACTTTTTTCTGTCTTTAGCTCTTTCAATGACATGGGTTTTGATTCCATTTTGTTAGGCGCATCTTTAGGGCTTTTGTTTTCTTACCTTTATGCTACTGTTTTTGGATTTCTGTGTATTGCTGTTGAGATTATGATTCTGATATACATCCAAAATGATTTTAATTTTCTAAACTATCTGCTCTAGCTGCCTGTGGAAACTGGAAAGTGATCCAATTTTGTATTTCATCTGTGTCTTCAAATCCAAAGATGAAATTGAGATTATTGGGAATGGGTGAAAAAGAAGCATAAGGTTGATTGCCATTTCCTTTGTTGGATCATTGTTTGTTATGATGGGACTCTTTTCTTTTTTGCTTGCAAATGTTTGACCTGAGTGTATTTGGTTTGAGCTTGTTGGATTGTTGAAGACACTTCTCTTTTTTTACTTCAGTTTTTGTTACCACAGTTTGCTCTCTTCTGATGGCCAGATGCAGTTTGAAATTTTTCTTGTGTTAAACTACCCTTAAAAGTCAAAGCTAAGTTGATTTATTATGGTATATTTGCACAAGATCCAACGAAAAACTATCCATATTGATTAGCGAGAAAATGACATTACTGGAGTTTGAGCAATATGGCACGGTGTTAGATTCACAAAATCTTGTCATGCATATTCTTAAATCTTAACATCTTGCATTTTAGATTCCAAAACTATTAGCATGTTTTACGTGGAGGATTTTCTTTCTGTCGTTCAAAGAAGGGGAGAACATTTTTATACCCTGTTATTGTTTGAATTTATCTGGAACAATTGTTCATTTGGTACTCAATTCATTCTAAAGATAAGAATTACTTGAATGAATCTATTGGGCAAATAGGTGAAAGGAACTGCAAGAATGATTACTTTTCTAATTTATCTAGGTCAATTTGATTTTTTAGTAGCAACACTTCCCTTCAGAAAATTTGATGGGTTGTAGGATAAGCTACAGTTTGCAGATAAAATTTGTTTTTGCAGATGAACTATTATGAATTTTGAAGAACTTTTGGGTTGGGAAAAACCTATTGACTTGATCAAATAACGTTGTATGCACCTGTGATGCTCTAGTTCTTTAGTTTTTCCATGTAGTTGCTGTCTTAGATGATGTATAATTTTTTTTTTTCTGTTACATTGCATGTGCTCTCTCCTGCCCTGATTTTATCGTCTGGTACATATCCATCATCTTCATTGATGTTTTAATTTTCCTTTTTCCATTCCTTTTGTGTCGAATTAGTAGGCGTACAATTAATTTAACGGTGAATTATTAGGCGTTCAATTAATTTAGCAGTCTGTTCATATGCAGACTAGTTAACTCTGCTATTGAGAAGGGCGAAGGTATCTGAGAACAGTGTGATGGTTAAAGCATACTCTCAGGAGTACACTTACAAGCACCCGTGGGAACGGGTAACTAGTGCATCTTGGCGTAAATTTGCCGACCCTGAAAACAAACGTACATTGTCCCATATTCTTGAAGTTGACACCTTAAACAGAAAGGTTGACCCCGAATCTGGGAAGCTATATACAACCCGTGCTATCACCATCCATGCCCCTGGACCATGGTTTGTTCGTAAAATTGTTGGTCAGGATATTTGCCATTGTGTCGAATCCACGGTTGTAGATGCTCGGTCACAATCGATGCAACTCACCACTCGGAATATTAGTCTCCAGAAGTTCATAGAAGTGGTGGAGAAAATCAGGTATGAACCTCACCCAGAAAATCCAAATGGATGGACGATTTGCAAACAGGAGACCAGTATTCGGATCAAGCCATTGTCAGCATTGGCAACGATGGCCGAAAAAGTGGAGCAACGGTGCGCAGAGAGGTTCGTGCAAAACAGTGCTAAGGGTAGAGAAGTGATGGAAAGGATTTGTAAGTATCTTGAAGCAGAATCTAGTGGATTCGCGATC

mRNA sequence

TTGCAATGATGTTTGTCTTTAGCTGCAATGGCCAAGGGTAGTTTCGTCATTAAAAAAAATAATAAATAAATAAATAAAAACTACTCCATTTAAAGTCGCTCCAATTGTAATGGTCTTGCTCTTGCTCAAACCTCTGATTTACCAAGGATTTTCTTTCCTTTTCTGGTCAGTTTTGATTTTGGAGATTGAGATCTTGACTCATCGGAACCGCCTTCTTCCCCCGCCGCCGAACCCCATTTTCTTTCATTTCTCAGTAGCAACACTTCCCTTCAGAAAATTTGATGGGTTGGCGAAGGTATCTGAGAACAGTGTGATGGTTAAAGCATACTCTCAGGAGTACACTTACAAGCACCCGTGGGAACGGGTAACTAGTGCATCTTGGCGTAAATTTGCCGACCCTGAAAACAAACGTACATTGTCCCATATTCTTGAAGTTGACACCTTAAACAGAAAGGTTGACCCCGAATCTGGGAAGCTATATACAACCCGTGCTATCACCATCCATGCCCCTGGACCATGGTTTGTTCGTAAAATTGTTGGTCAGGATATTTGCCATTGTGTCGAATCCACGGTTGTAGATGCTCGGTCACAATCGATGCAACTCACCACTCGGAATATTAGTCTCCAGAAGTTCATAGAAGTGGTGGAGAAAATCAGGTATGAACCTCACCCAGAAAATCCAAATGGATGGACGATTTGCAAACAGGAGACCAGTATTCGGATCAAGCCATTGTCAGCATTGGCAACGATGGCCGAAAAAGTGGAGCAACGGTGCGCAGAGAGGTTCGTGCAAAACAGTGCTAAGGGTAGAGAAGTGATGGAAAGGATTTGTAAGTATCTTGAAGCAGAATCTAGTGGATTCGCGATC

Coding sequence (CDS)

ATGGTCTTGCTCTTGCTCAAACCTCTGATTTACCAAGGATTTTCTTTCCTTTTCTGGTCAGTTTTGATTTTGGAGATTGAGATCTTGACTCATCGGAACCGCCTTCTTCCCCCGCCGCCGAACCCCATTTTCTTTCATTTCTCAGTAGCAACACTTCCCTTCAGAAAATTTGATGGGTTGGCGAAGGTATCTGAGAACAGTGTGATGGTTAAAGCATACTCTCAGGAGTACACTTACAAGCACCCGTGGGAACGGGTAACTAGTGCATCTTGGCGTAAATTTGCCGACCCTGAAAACAAACGTACATTGTCCCATATTCTTGAAGTTGACACCTTAAACAGAAAGGTTGACCCCGAATCTGGGAAGCTATATACAACCCGTGCTATCACCATCCATGCCCCTGGACCATGGTTTGTTCGTAAAATTGTTGGTCAGGATATTTGCCATTGTGTCGAATCCACGGTTGTAGATGCTCGGTCACAATCGATGCAACTCACCACTCGGAATATTAGTCTCCAGAAGTTCATAGAAGTGGTGGAGAAAATCAGGTATGAACCTCACCCAGAAAATCCAAATGGATGGACGATTTGCAAACAGGAGACCAGTATTCGGATCAAGCCATTGTCAGCATTGGCAACGATGGCCGAAAAAGTGGAGCAACGGTGCGCAGAGAGGTTCGTGCAAAACAGTGCTAAGGGTAGAGAAGTGATGGAAAGGATTTGTAAGTATCTTGAAGCAGAATCTAGTGGATTCGCGATC

Protein sequence

MVLLLLKPLIYQGFSFLFWSVLILEIEILTHRNRLLPPPPNPIFFHFSVATLPFRKFDGLAKVSENSVMVKAYSQEYTYKHPWERVTSASWRKFADPENKRTLSHILEVDTLNRKVDPESGKLYTTRAITIHAPGPWFVRKIVGQDICHCVESTVVDARSQSMQLTTRNISLQKFIEVVEKIRYEPHPENPNGWTICKQETSIRIKPLSALATMAEKVEQRCAERFVQNSAKGREVMERICKYLEAESSGFAI

Homology

[Close]

BLAST of Lsi06G005200 vs. ExPASy Swiss-Prot
Match: Q54G07 (Protein slowmo homolog OS=Dictyostelium discoideum OX=44689 GN=slmo PE=3 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 4.7e-23
Identity = 58/163 (35.58%), Postives = 94/163 (57.67%), Query Frame = 0


Query: 76  EYTYKHPWERVTSASWRKFADPENKRTLSHILEVDTLNRKVDPESGKLYTTRAITIHAPG 135
           ++TYKH W   ++AS+RK+  PE       IL +D L++++DP +G L  T+ I      
Sbjct: 8   KHTYKHLWSDASTASFRKYPSPER----PDILSIDILSKEIDPTTGVLKCTKLIICKGNT 67

Query: 136 PWFVRKIVGQDICHCVESTVVDARSQSMQLTTRNISLQKFIEVVEKIRYEPHPENPNGWT 195
           P +++ I+G   C   E T VD +++ M L T+N++    + V E   YE HP+N   WT
Sbjct: 68  PSWLKSILGSGECLFYEETTVDPKNKIMTLKTKNLNFTNILGVDEVCTYEQHPDNEE-WT 127

Query: 196 ICKQETSIRIKPLSALATMAEKVEQRCAERFVQNSAKGREVME 239
           +  QE ++     S++  +A K+E  C +RFV N+ KGR++ME
Sbjct: 128 LFTQEATV----TSSIFGVARKMEAFCLDRFVANAGKGRKIME 161

[Close]

BLAST of Lsi06G005200 vs. ExPASy Swiss-Prot
Match: Q4R5S9 (PRELI domain containing protein 3B OS=Macaca fascicularis OX=9541 GN=PRELID3B PE=2 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 1.7e-20
Identity = 61/180 (33.89%), Postives = 104/180 (57.78%), Query Frame = 0


Query: 70  VKAYSQEYTYKHPWERVTSASWRKFADPENKRTLSHILEVDTLNRKVDPESGKLYTTRAI 129
           +K ++ E+ + HPWE VT+A+ +K+ +P N      ++ VD L+R +DP SGKL++ R +
Sbjct: 1   MKIWTSEHVFDHPWETVTTAAMQKYPNPMN----PSVVGVDVLDRHIDP-SGKLHSHRLL 60

Query: 130 TIHAPGPWFVRKIVG--QDICHCVESTVVDARSQSMQLTTRNISLQKFIEVVEKIRYEPH 189
           +     P  V+ ++G  +   +  E +VVD   ++M+L + NIS    + V E++ Y+PH
Sbjct: 61  STEWGLPSIVKSLIGAARTKTYVQEHSVVDPVEKTMELKSTNISFTNMVSVDERLIYKPH 120

Query: 190 PENPNGWTICKQETSIRIKPLSALATMAEKVEQRCAERFVQNSAKGREVMERICKYLEAE 248
           P++P+  TI  QE  I +K +S    ++  +E   A     N++KGRE ME +   L AE
Sbjct: 121 PQDPDK-TILTQEAIITVKGVS----LSSYLEGLMASTISSNASKGREAMEWVIHKLNAE 170

[Close]

BLAST of Lsi06G005200 vs. ExPASy Swiss-Prot
Match: Q6TMK8 (PRELI domain containing protein 3B OS=Cricetulus griseus OX=10029 GN=PRELID3B PE=2 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 2.2e-20
Identity = 62/185 (33.51%), Postives = 103/185 (55.68%), Query Frame = 0


Query: 70  VKAYSQEYTYKHPWERVTSASWRKFADPENKRTLSHILEVDTLNRKVDPESGKLYTTRAI 129
           +K ++ E+ + HPWE VT+A+ +K+ +P N      ++ VD L+R VDP SGKL++ R +
Sbjct: 1   MKIWTSEHVFDHPWEMVTTAAMQKYPNPMN----PSVVGVDVLDRHVDP-SGKLHSHRLL 60

Query: 130 TIHAPGPWFVRKIVG--QDICHCVESTVVDARSQSMQLTTRNISLQKFIEVVEKIRYEPH 189
           +     P  V+ ++G  +   +  E +VVD   ++M+L + NIS    + V E++ Y+PH
Sbjct: 61  STEWGLPSIVKSLIGAARTKTYVQEHSVVDPVKKTMELKSTNISFTNMVSVDERLTYKPH 120

Query: 190 PENPNGWTICKQETSIRIKPLSALATMAEKVEQRCAERFVQNSAKGREVMERICKYLEAE 249
           P++P   T+  QE  I +K +S    ++  +E   A     N+ KGRE ME +   L AE
Sbjct: 121 PQDPEK-TVLTQEAIITVKGVS----LSSYLEGLMASTISSNANKGREAMEWVIHKLNAE 175

Query: 250 SSGFA 253
               A
Sbjct: 181 IEDLA 175

[Close]

BLAST of Lsi06G005200 vs. ExPASy Swiss-Prot
Match: Q9Y3B1 (PRELI domain containing protein 3B OS=Homo sapiens OX=9606 GN=PRELID3B PE=1 SV=2)

HSP 1 Score: 100.5 bits (249), Expect = 2.8e-20
Identity = 60/180 (33.33%), Postives = 103/180 (57.22%), Query Frame = 0


Query: 70  VKAYSQEYTYKHPWERVTSASWRKFADPENKRTLSHILEVDTLNRKVDPESGKLYTTRAI 129
           +K ++ E+ + HPWE VT+A+ +K+ +P N      ++ VD L+R +DP SGKL++ R +
Sbjct: 1   MKIWTSEHVFDHPWETVTTAAMQKYPNPMN----PSVVGVDVLDRHIDP-SGKLHSHRLL 60

Query: 130 TIHAPGPWFVRKIVG--QDICHCVESTVVDARSQSMQLTTRNISLQKFIEVVEKIRYEPH 189
           +     P  V+ ++G  +   +  E +VVD   ++M+L + NIS    + V E++ Y+PH
Sbjct: 61  STEWGLPSIVKSLIGAARTKTYVQEHSVVDPVEKTMELKSTNISFTNMVSVDERLIYKPH 120

Query: 190 PENPNGWTICKQETSIRIKPLSALATMAEKVEQRCAERFVQNSAKGREVMERICKYLEAE 248
           P++P   T+  QE  I +K +S    ++  +E   A     N++KGRE ME +   L AE
Sbjct: 121 PQDPEK-TVLTQEAIITVKGVS----LSSYLEGLMASTISSNASKGREAMEWVIHKLNAE 170

[Close]

BLAST of Lsi06G005200 vs. ExPASy Swiss-Prot
Match: Q58DB0 (PRELI domain containing protein 3B OS=Bos taurus OX=9913 GN=PRELID3B PE=2 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 3.7e-20
Identity = 62/180 (34.44%), Postives = 101/180 (56.11%), Query Frame = 0


Query: 70  VKAYSQEYTYKHPWERVTSASWRKFADPENKRTLSHILEVDTLNRKVDPESGKLYTTRAI 129
           +K ++ E+ + HPWE VT+A+ +K+ +P N      ++ VD L+R +DP SGKL++ R +
Sbjct: 1   MKIWTSEHVFDHPWETVTTAAMQKYPNPMN----PSVVGVDVLDRHIDP-SGKLHSHRLL 60

Query: 130 TIHAPGPWFVRKIVG--QDICHCVESTVVDARSQSMQLTTRNISLQKFIEVVEKIRYEPH 189
           +     P  V+ I+G  +   +  E +VVD   ++M+L + NIS    + V E++ Y+PH
Sbjct: 61  STEWGLPSIVKSIIGAARTKTYVQEHSVVDPVEKTMELKSTNISFTNMVSVDERLIYKPH 120

Query: 190 PENPNGWTICKQETSIRIKPLSALATMAEKVEQRCAERFVQNSAKGREVMERICKYLEAE 248
           P++P   TI  QE  I +K +S    +   +E   A     N+ KGRE ME +   L AE
Sbjct: 121 PQDPEK-TILTQEAIITVKGVS----LGSYLEGLMASTISSNANKGREAMEWVIHKLNAE 170

[Close]

BLAST of Lsi06G005200 vs. ExPASy TrEMBL
Match: A0A5D3D5P3 (Protein slowmo-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold204G00340 PE=4 SV=1)

HSP 1 Score: 373.2 bits (957), Expect = 8.4e-100
Identity = 182/185 (98.38%), Postives = 183/185 (98.92%), Query Frame = 0


Query: 69  MVKAYSQEYTYKHPWERVTSASWRKFADPENKRTLSHILEVDTLNRKVDPESGKLYTTRA 128
           MVKAYSQEYTYKHPWERVT ASWRKFADPENKRTLSHILEVDTLNRKVD ESGKLYTTRA
Sbjct: 1   MVKAYSQEYTYKHPWERVTCASWRKFADPENKRTLSHILEVDTLNRKVDAESGKLYTTRA 60

Query: 129 ITIHAPGPWFVRKIVGQDICHCVESTVVDARSQSMQLTTRNISLQKFIEVVEKIRYEPHP 188
           ITIHAPGPWFVRKIVGQDICHCVESTVVDARSQSMQLTTRNISLQKFIEVVEKIRYEPHP
Sbjct: 61  ITIHAPGPWFVRKIVGQDICHCVESTVVDARSQSMQLTTRNISLQKFIEVVEKIRYEPHP 120

Query: 189 ENPNGWTICKQETSIRIKPLSALATMAEKVEQRCAERFVQNSAKGREVMERICKYLEAES 248
           ENPNGWTICKQETSIRIKPLSALA+MAEKVEQRCAERFVQNSAKGREVMERICKYLEAES
Sbjct: 121 ENPNGWTICKQETSIRIKPLSALASMAEKVEQRCAERFVQNSAKGREVMERICKYLEAES 180

Query: 249 SGFAI 254
           SGFAI
Sbjct: 181 SGFAI 185

[Close]

BLAST of Lsi06G005200 vs. ExPASy TrEMBL
Match: A0A1S3BPV8 (protein slowmo homolog OS=Cucumis melo OX=3656 GN=LOC103492037 PE=4 SV=1)

HSP 1 Score: 373.2 bits (957), Expect = 8.4e-100
Identity = 182/185 (98.38%), Postives = 183/185 (98.92%), Query Frame = 0


Query: 69  MVKAYSQEYTYKHPWERVTSASWRKFADPENKRTLSHILEVDTLNRKVDPESGKLYTTRA 128
           MVKAYSQEYTYKHPWERVT ASWRKFADPENKRTLSHILEVDTLNRKVD ESGKLYTTRA
Sbjct: 1   MVKAYSQEYTYKHPWERVTCASWRKFADPENKRTLSHILEVDTLNRKVDAESGKLYTTRA 60

Query: 129 ITIHAPGPWFVRKIVGQDICHCVESTVVDARSQSMQLTTRNISLQKFIEVVEKIRYEPHP 188
           ITIHAPGPWFVRKIVGQDICHCVESTVVDARSQSMQLTTRNISLQKFIEVVEKIRYEPHP
Sbjct: 61  ITIHAPGPWFVRKIVGQDICHCVESTVVDARSQSMQLTTRNISLQKFIEVVEKIRYEPHP 120

Query: 189 ENPNGWTICKQETSIRIKPLSALATMAEKVEQRCAERFVQNSAKGREVMERICKYLEAES 248
           ENPNGWTICKQETSIRIKPLSALA+MAEKVEQRCAERFVQNSAKGREVMERICKYLEAES
Sbjct: 121 ENPNGWTICKQETSIRIKPLSALASMAEKVEQRCAERFVQNSAKGREVMERICKYLEAES 180

Query: 249 SGFAI 254
           SGFAI
Sbjct: 181 SGFAI 185

[Close]

BLAST of Lsi06G005200 vs. ExPASy TrEMBL
Match: A0A0A0LXA5 (PRELI/MSF1 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G613520 PE=4 SV=1)

HSP 1 Score: 370.5 bits (950), Expect = 5.4e-99
Identity = 180/185 (97.30%), Postives = 183/185 (98.92%), Query Frame = 0


Query: 69  MVKAYSQEYTYKHPWERVTSASWRKFADPENKRTLSHILEVDTLNRKVDPESGKLYTTRA 128
           MVKAYSQEYTYKHPWERVT ASWRKFADPENKRTLSHILEVDTLNRKVD ESGKLYTTRA
Sbjct: 1   MVKAYSQEYTYKHPWERVTCASWRKFADPENKRTLSHILEVDTLNRKVDAESGKLYTTRA 60

Query: 129 ITIHAPGPWFVRKIVGQDICHCVESTVVDARSQSMQLTTRNISLQKFIEVVEKIRYEPHP 188
           ITIHAPGPWFVRKIVGQDICHCVESTVVDARSQSMQLTTRNISLQKFIEVVEKIRYEPHP
Sbjct: 61  ITIHAPGPWFVRKIVGQDICHCVESTVVDARSQSMQLTTRNISLQKFIEVVEKIRYEPHP 120

Query: 189 ENPNGWTICKQETSIRIKPLSALATMAEKVEQRCAERFVQNSAKGREVMERICKYLEAES 248
           ENPNGWTICKQETSI+IKPLSALA+MAEKVEQRCAE+FVQNSAKGREVMERICKYLEAES
Sbjct: 121 ENPNGWTICKQETSIQIKPLSALASMAEKVEQRCAEKFVQNSAKGREVMERICKYLEAES 180

Query: 249 SGFAI 254
           SGFAI
Sbjct: 181 SGFAI 185

[Close]

BLAST of Lsi06G005200 vs. ExPASy TrEMBL
Match: A0A6J1DMT6 (protein slowmo homolog OS=Momordica charantia OX=3673 GN=LOC111021459 PE=4 SV=1)

HSP 1 Score: 362.5 bits (929), Expect = 1.5e-96
Identity = 172/185 (92.97%), Postives = 183/185 (98.92%), Query Frame = 0


Query: 69  MVKAYSQEYTYKHPWERVTSASWRKFADPENKRTLSHILEVDTLNRKVDPESGKLYTTRA 128
           MVKAYSQEYTYKHPWERVTSASWRKFADPENKRTLSHILEVDTLNRKVDPESGKLYTTRA
Sbjct: 1   MVKAYSQEYTYKHPWERVTSASWRKFADPENKRTLSHILEVDTLNRKVDPESGKLYTTRA 60

Query: 129 ITIHAPGPWFVRKIVGQDICHCVESTVVDARSQSMQLTTRNISLQKFIEVVEKIRYEPHP 188
           ITIHAPGPWFVRKIVGQDICHC+ES++VDA+SQSMQL+TRNISLQ+FIEVVEKIRY+PHP
Sbjct: 61  ITIHAPGPWFVRKIVGQDICHCIESSMVDAQSQSMQLSTRNISLQRFIEVVEKIRYDPHP 120

Query: 189 ENPNGWTICKQETSIRIKPLSALATMAEKVEQRCAERFVQNSAKGREVMERICKYLEAES 248
           +NPNGWTIC+QETSIRIKPLSALA+MAEKVEQRCAE+FVQNSAKGREVMERICKYLEAES
Sbjct: 121 DNPNGWTICRQETSIRIKPLSALASMAEKVEQRCAEKFVQNSAKGREVMERICKYLEAES 180

Query: 249 SGFAI 254
           SG  I
Sbjct: 181 SGITI 185

[Close]

BLAST of Lsi06G005200 vs. ExPASy TrEMBL
Match: A0A6J1JKY7 (protein slowmo homolog OS=Cucurbita maxima OX=3661 GN=LOC111485522 PE=4 SV=1)

HSP 1 Score: 361.3 bits (926), Expect = 3.3e-96
Identity = 173/185 (93.51%), Postives = 179/185 (96.76%), Query Frame = 0


Query: 69  MVKAYSQEYTYKHPWERVTSASWRKFADPENKRTLSHILEVDTLNRKVDPESGKLYTTRA 128
           MV+AYSQEYTYKHPWERVT ASWRKF DPENKRTLSHILEVDTLNRKVDPESGKLYTTRA
Sbjct: 1   MVRAYSQEYTYKHPWERVTCASWRKFTDPENKRTLSHILEVDTLNRKVDPESGKLYTTRA 60

Query: 129 ITIHAPGPWFVRKIVGQDICHCVESTVVDARSQSMQLTTRNISLQKFIEVVEKIRYEPHP 188
           ITIHAPGPWF+RKIVGQDICHCVESTVVDA SQSMQLTTRNISLQKFIEVVEKIRY+PHP
Sbjct: 61  ITIHAPGPWFIRKIVGQDICHCVESTVVDAWSQSMQLTTRNISLQKFIEVVEKIRYDPHP 120

Query: 189 ENPNGWTICKQETSIRIKPLSALATMAEKVEQRCAERFVQNSAKGREVMERICKYLEAES 248
           +NPNGWTIC+QETSIRIKPLSALA+MAEKVEQRCAERFVQNS KGREVMERICKYLEAES
Sbjct: 121 DNPNGWTICRQETSIRIKPLSALASMAEKVEQRCAERFVQNSVKGREVMERICKYLEAES 180

Query: 249 SGFAI 254
           SG  I
Sbjct: 181 SGLTI 185

[Close]

BLAST of Lsi06G005200 vs. NCBI nr
Match: XP_008450435.1 (PREDICTED: protein slowmo homolog [Cucumis melo] >TYK18842.1 protein slowmo-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 373.2 bits (957), Expect = 1.7e-99
Identity = 182/185 (98.38%), Postives = 183/185 (98.92%), Query Frame = 0


Query: 69  MVKAYSQEYTYKHPWERVTSASWRKFADPENKRTLSHILEVDTLNRKVDPESGKLYTTRA 128
           MVKAYSQEYTYKHPWERVT ASWRKFADPENKRTLSHILEVDTLNRKVD ESGKLYTTRA
Sbjct: 1   MVKAYSQEYTYKHPWERVTCASWRKFADPENKRTLSHILEVDTLNRKVDAESGKLYTTRA 60

Query: 129 ITIHAPGPWFVRKIVGQDICHCVESTVVDARSQSMQLTTRNISLQKFIEVVEKIRYEPHP 188
           ITIHAPGPWFVRKIVGQDICHCVESTVVDARSQSMQLTTRNISLQKFIEVVEKIRYEPHP
Sbjct: 61  ITIHAPGPWFVRKIVGQDICHCVESTVVDARSQSMQLTTRNISLQKFIEVVEKIRYEPHP 120

Query: 189 ENPNGWTICKQETSIRIKPLSALATMAEKVEQRCAERFVQNSAKGREVMERICKYLEAES 248
           ENPNGWTICKQETSIRIKPLSALA+MAEKVEQRCAERFVQNSAKGREVMERICKYLEAES
Sbjct: 121 ENPNGWTICKQETSIRIKPLSALASMAEKVEQRCAERFVQNSAKGREVMERICKYLEAES 180

Query: 249 SGFAI 254
           SGFAI
Sbjct: 181 SGFAI 185

[Close]

BLAST of Lsi06G005200 vs. NCBI nr
Match: XP_011660128.1 (protein slowmo homolog [Cucumis sativus] >XP_011660129.1 protein slowmo homolog [Cucumis sativus] >XP_011660130.1 protein slowmo homolog [Cucumis sativus] >XP_011660131.1 protein slowmo homolog [Cucumis sativus] >XP_031735993.1 protein slowmo homolog [Cucumis sativus] >XP_031735994.1 protein slowmo homolog [Cucumis sativus] >KGN66480.1 hypothetical protein Csa_007515 [Cucumis sativus])

HSP 1 Score: 370.5 bits (950), Expect = 1.1e-98
Identity = 180/185 (97.30%), Postives = 183/185 (98.92%), Query Frame = 0


Query: 69  MVKAYSQEYTYKHPWERVTSASWRKFADPENKRTLSHILEVDTLNRKVDPESGKLYTTRA 128
           MVKAYSQEYTYKHPWERVT ASWRKFADPENKRTLSHILEVDTLNRKVD ESGKLYTTRA
Sbjct: 1   MVKAYSQEYTYKHPWERVTCASWRKFADPENKRTLSHILEVDTLNRKVDAESGKLYTTRA 60

Query: 129 ITIHAPGPWFVRKIVGQDICHCVESTVVDARSQSMQLTTRNISLQKFIEVVEKIRYEPHP 188
           ITIHAPGPWFVRKIVGQDICHCVESTVVDARSQSMQLTTRNISLQKFIEVVEKIRYEPHP
Sbjct: 61  ITIHAPGPWFVRKIVGQDICHCVESTVVDARSQSMQLTTRNISLQKFIEVVEKIRYEPHP 120

Query: 189 ENPNGWTICKQETSIRIKPLSALATMAEKVEQRCAERFVQNSAKGREVMERICKYLEAES 248
           ENPNGWTICKQETSI+IKPLSALA+MAEKVEQRCAE+FVQNSAKGREVMERICKYLEAES
Sbjct: 121 ENPNGWTICKQETSIQIKPLSALASMAEKVEQRCAEKFVQNSAKGREVMERICKYLEAES 180

Query: 249 SGFAI 254
           SGFAI
Sbjct: 181 SGFAI 185

[Close]

BLAST of Lsi06G005200 vs. NCBI nr
Match: XP_038880305.1 (protein slowmo homolog [Benincasa hispida] >XP_038880306.1 protein slowmo homolog [Benincasa hispida])

HSP 1 Score: 370.2 bits (949), Expect = 1.5e-98
Identity = 179/185 (96.76%), Postives = 182/185 (98.38%), Query Frame = 0


Query: 69  MVKAYSQEYTYKHPWERVTSASWRKFADPENKRTLSHILEVDTLNRKVDPESGKLYTTRA 128
           MVKAYSQEYTYKHPW+RVT ASWRKFADPENKR LSHILEVDTLNRKVDPESGKLYTTRA
Sbjct: 1   MVKAYSQEYTYKHPWDRVTCASWRKFADPENKRILSHILEVDTLNRKVDPESGKLYTTRA 60

Query: 129 ITIHAPGPWFVRKIVGQDICHCVESTVVDARSQSMQLTTRNISLQKFIEVVEKIRYEPHP 188
           ITIHAPGPWFVRKIVGQDICHCVESTVVDARSQSMQLTTRNISLQKFIEVVEKIRYEPHP
Sbjct: 61  ITIHAPGPWFVRKIVGQDICHCVESTVVDARSQSMQLTTRNISLQKFIEVVEKIRYEPHP 120

Query: 189 ENPNGWTICKQETSIRIKPLSALATMAEKVEQRCAERFVQNSAKGREVMERICKYLEAES 248
           ENPNGWTICKQETSIRIKPLSALA+MAEKVEQRCAERFVQNSAKGREVMERICKYLEAES
Sbjct: 121 ENPNGWTICKQETSIRIKPLSALASMAEKVEQRCAERFVQNSAKGREVMERICKYLEAES 180

Query: 249 SGFAI 254
           +GF I
Sbjct: 181 NGFTI 185

[Close]

BLAST of Lsi06G005200 vs. NCBI nr
Match: XP_022154131.1 (protein slowmo homolog [Momordica charantia])

HSP 1 Score: 362.5 bits (929), Expect = 3.0e-96
Identity = 172/185 (92.97%), Postives = 183/185 (98.92%), Query Frame = 0


Query: 69  MVKAYSQEYTYKHPWERVTSASWRKFADPENKRTLSHILEVDTLNRKVDPESGKLYTTRA 128
           MVKAYSQEYTYKHPWERVTSASWRKFADPENKRTLSHILEVDTLNRKVDPESGKLYTTRA
Sbjct: 1   MVKAYSQEYTYKHPWERVTSASWRKFADPENKRTLSHILEVDTLNRKVDPESGKLYTTRA 60

Query: 129 ITIHAPGPWFVRKIVGQDICHCVESTVVDARSQSMQLTTRNISLQKFIEVVEKIRYEPHP 188
           ITIHAPGPWFVRKIVGQDICHC+ES++VDA+SQSMQL+TRNISLQ+FIEVVEKIRY+PHP
Sbjct: 61  ITIHAPGPWFVRKIVGQDICHCIESSMVDAQSQSMQLSTRNISLQRFIEVVEKIRYDPHP 120

Query: 189 ENPNGWTICKQETSIRIKPLSALATMAEKVEQRCAERFVQNSAKGREVMERICKYLEAES 248
           +NPNGWTIC+QETSIRIKPLSALA+MAEKVEQRCAE+FVQNSAKGREVMERICKYLEAES
Sbjct: 121 DNPNGWTICRQETSIRIKPLSALASMAEKVEQRCAEKFVQNSAKGREVMERICKYLEAES 180

Query: 249 SGFAI 254
           SG  I
Sbjct: 181 SGITI 185

[Close]

BLAST of Lsi06G005200 vs. NCBI nr
Match: XP_022960775.1 (protein slowmo homolog [Cucurbita moschata] >XP_022988219.1 protein slowmo homolog [Cucurbita maxima] >XP_023516290.1 protein slowmo homolog [Cucurbita pepo subsp. pepo] >KAG7023860.1 Protein slowmo-like protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 361.3 bits (926), Expect = 6.8e-96
Identity = 173/185 (93.51%), Postives = 179/185 (96.76%), Query Frame = 0


Query: 69  MVKAYSQEYTYKHPWERVTSASWRKFADPENKRTLSHILEVDTLNRKVDPESGKLYTTRA 128
           MV+AYSQEYTYKHPWERVT ASWRKF DPENKRTLSHILEVDTLNRKVDPESGKLYTTRA
Sbjct: 1   MVRAYSQEYTYKHPWERVTCASWRKFTDPENKRTLSHILEVDTLNRKVDPESGKLYTTRA 60

Query: 129 ITIHAPGPWFVRKIVGQDICHCVESTVVDARSQSMQLTTRNISLQKFIEVVEKIRYEPHP 188
           ITIHAPGPWF+RKIVGQDICHCVESTVVDA SQSMQLTTRNISLQKFIEVVEKIRY+PHP
Sbjct: 61  ITIHAPGPWFIRKIVGQDICHCVESTVVDAWSQSMQLTTRNISLQKFIEVVEKIRYDPHP 120

Query: 189 ENPNGWTICKQETSIRIKPLSALATMAEKVEQRCAERFVQNSAKGREVMERICKYLEAES 248
           +NPNGWTIC+QETSIRIKPLSALA+MAEKVEQRCAERFVQNS KGREVMERICKYLEAES
Sbjct: 121 DNPNGWTICRQETSIRIKPLSALASMAEKVEQRCAERFVQNSVKGREVMERICKYLEAES 180

Query: 249 SGFAI 254
           SG  I
Sbjct: 181 SGLTI 185

[Close]

BLAST of Lsi06G005200 vs. TAIR 10
Match: AT5G13070.1 (MSF1-like family protein )

HSP 1 Score: 322.0 bits (824), Expect = 4.3e-88
Identity = 147/181 (81.22%), Postives = 172/181 (95.03%), Query Frame = 0


Query: 69  MVKAYSQEYTYKHPWERVTSASWRKFADPENKRTLSHILEVDTLNRKVDPESGKLYTTRA 128
           MVKAY QE+ YKHPWERV++ASWRKFADPENKR LSHILEVDTLNRK+D E+GKL+TTRA
Sbjct: 1   MVKAYRQEHVYKHPWERVSAASWRKFADPENKRILSHILEVDTLNRKLDTETGKLHTTRA 60

Query: 129 ITIHAPGPWFVRKIVGQDICHCVESTVVDARSQSMQLTTRNISLQKFIEVVEKIRYEPHP 188
           +TIHAPGPWF+ +I+GQDICHCVESTVVD +S+SMQLTT+NISL+KFIEV E+IRY+PHP
Sbjct: 61  LTIHAPGPWFLHRIIGQDICHCVESTVVDGKSRSMQLTTKNISLKKFIEVEERIRYDPHP 120

Query: 189 ENPNGWTICKQETSIRIKPLSALATMAEKVEQRCAERFVQNSAKGREVMERICKYLEAES 248
           +NP+ WT+C QETSIRIKPLSALA+MAEKVEQ+CAE+F+QNSAKGREVMERICKY+EAES
Sbjct: 121 DNPSAWTVCSQETSIRIKPLSALASMAEKVEQKCAEKFMQNSAKGREVMERICKYMEAES 180

Query: 249 S 250
           +
Sbjct: 181 A 181

The following BLAST results are available for this feature:

BLAST of Lsi06G005200 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q54G07	4.7e-23	35.58	Protein slowmo homolog OS=Dictyostelium discoideum OX=44689 GN=slmo PE=3 SV=1	[more]
Q4R5S9	1.7e-20	33.89	PRELI domain containing protein 3B OS=Macaca fascicularis OX=9541 GN=PRELID3B PE...	[more]
Q6TMK8	2.2e-20	33.51	PRELI domain containing protein 3B OS=Cricetulus griseus OX=10029 GN=PRELID3B PE...	[more]
Q9Y3B1	2.8e-20	33.33	PRELI domain containing protein 3B OS=Homo sapiens OX=9606 GN=PRELID3B PE=1 SV=2	[more]
Q58DB0	3.7e-20	34.44	PRELI domain containing protein 3B OS=Bos taurus OX=9913 GN=PRELID3B PE=2 SV=1	[more]

BLAST of Lsi06G005200 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D5P3	8.4e-100	98.38	Protein slowmo-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A1S3BPV8	8.4e-100	98.38	protein slowmo homolog OS=Cucumis melo OX=3656 GN=LOC103492037 PE=4 SV=1	[more]
A0A0A0LXA5	5.4e-99	97.30	PRELI/MSF1 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G613520 ...	[more]
A0A6J1DMT6	1.5e-96	92.97	protein slowmo homolog OS=Momordica charantia OX=3673 GN=LOC111021459 PE=4 SV=1	[more]
A0A6J1JKY7	3.3e-96	93.51	protein slowmo homolog OS=Cucurbita maxima OX=3661 GN=LOC111485522 PE=4 SV=1	[more]

BLAST of Lsi06G005200 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008450435.1	1.7e-99	98.38	PREDICTED: protein slowmo homolog [Cucumis melo] >TYK18842.1 protein slowmo-like...	[more]
XP_011660128.1	1.1e-98	97.30	protein slowmo homolog [Cucumis sativus] >XP_011660129.1 protein slowmo homolog ...	[more]
XP_038880305.1	1.5e-98	96.76	protein slowmo homolog [Benincasa hispida] >XP_038880306.1 protein slowmo homolo...	[more]
XP_022154131.1	3.0e-96	92.97	protein slowmo homolog [Momordica charantia]	[more]
XP_022960775.1	6.8e-96	93.51	protein slowmo homolog [Cucurbita moschata] >XP_022988219.1 protein slowmo homol...	[more]

BLAST of Lsi06G005200 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G13070.1	4.3e-88	81.22	MSF1-like family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006797	PRELI/MSF1 domain	PFAM	PF04707	PRELI	coord: 84..246 e-value: 2.0E-48 score: 164.2
IPR006797	PRELI/MSF1 domain	PROSITE	PS50904	PRELI_MSF1	coord: 70..249 score: 43.453724
IPR037365	Slowmo/Ups family	PANTHER	PTHR11158	MSF1/PX19 RELATED	coord: 69..250
None	No IPR available	PANTHER	PTHR11158:SF34	PRELI DOMAIN CONTAINING PROTEIN 3A-LIKE ISOFORM X1	coord: 69..250

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi06G005200.1	Lsi06G005200.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0120009	intermembrane lipid transfer
biological_process	GO:0015914	phospholipid transport
cellular_component	GO:0005758	mitochondrial intermembrane space
molecular_function	GO:1990050	phosphatidic acid transfer activity