Lsi06G004360 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi06G004360
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Unknown protein
Location	chr06: 4765814 .. 4766911 (-)
RNA-Seq Expression	Lsi06G004360
Synteny	Lsi06G004360

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAAGTAATTATGTTTCTTCAAAAGCCTCAAACTTTCAACCACACGATTCTATTTAAAGGGAACATGATTAGAAAGAAAAAAATGAAAAGTTTGATTTAAAAAAAAGTCTAAAAAAAGAGTTCAACTTTTCCTCCTTTGAATAAATAGGGGCTCTTTTCAAATATAAAAAAAATGAGTTAAACTATTTACAAATATAAAATAATTTTTATGTCTATTGGCGATAAACCATAATAAAATTTTATCGCTTGAGCGATAGATAGCGATAAAGTGATAGAATTCTATTGCAGTGATACACTGAGTGACAGTGAAATTTTTCTATATTTGTAAATAGTTTGATATTTTCTTTATTATAGTAATTTCTCGAATAAATATCATGTTACTTGACTTTGTTAGATCTAAATCAAAGGTGATCGACATGTCACCTACGATATTTGGGAAGCTAACTAAGCAAGAAAGTTGTCTAACTTGTTCACTTAATCAATACATCAGTAACCTTTTCTTCTAAGCCAAAGGTTCAAATCACTTTTGATTTTAAGAAAATGGGAAAAGGACAAGAAAGTTATGATGACGATCTACAATTTTCTTGTAGCAACATCAAACTATGCCTTGATGAGAGAGAGGAGAGAAAAAAAATCAGTCTAAACAAAAAGACATTACCCCAACAAGGAAATCAAAGAACACATTAATAAACACAGCAATTAATGTCTTATTATCACATTTGAGCAGACATATCAATGACCCTTATATACAATACATGGTGGACCCTCTTTGCAGAAGTAAAAAAAAAAGAAACAGGGGGAAACCTTTGTTAGCGACTCAAGTGAGTATCAGATCCTTTGGATTCAGATTGCGGCGATCTCCATTTTTATCCTTCCTCGACAGAAAGCAAGCAAGCCGAAAGCTCAGCCACGGTTGCACCGAGAGCGGGGCAGTAAGAAGTTGAGCAGCTTTGATAAGAATGGAAAAATGACGGTCCTTTTCAGCAGCAACCGGTATCGGAGGTCGCCAGCAATCTCCAAGAATCATCAGGAATTGAGAAGAAAACAAGCATAATTGATGGAACTATTCTATTGCTGGAGGCATCATACAAATAT

mRNA sequence

ATGGGAAACATATCAATGACCCTTATATACAATACATGGTGGACCCTCTTTGCAGAAGGGGAAACCTTTGTTAGCGACTCAAGTGAGTATCAGATCCTTTGGATTCAGATTGCGGCGATCTCCATTTTTATCCTTCCTCGACAGAAAGCAAGCAAGCCGAAAGCTCAGCCACGGTTGCACCGAGAGCGGGGCAGTAAGAAGTTGAGCAGCTTTGATAAGAATGGAAAAATGACGCAGCAACCGGTATCGGAGGTCGCCAGCAATCTCCAAGAATCATCAGGAATTGAGAAGAAAACAAGCATAATTGATGGAACTATTCTATTGCTGGAGGCATCATACAAATAT

Coding sequence (CDS)

ATGGGAAACATATCAATGACCCTTATATACAATACATGGTGGACCCTCTTTGCAGAAGGGGAAACCTTTGTTAGCGACTCAAGTGAGTATCAGATCCTTTGGATTCAGATTGCGGCGATCTCCATTTTTATCCTTCCTCGACAGAAAGCAAGCAAGCCGAAAGCTCAGCCACGGTTGCACCGAGAGCGGGGCAGTAAGAAGTTGAGCAGCTTTGATAAGAATGGAAAAATGACGCAGCAACCGGTATCGGAGGTCGCCAGCAATCTCCAAGAATCATCAGGAATTGAGAAGAAAACAAGCATAATTGATGGAACTATTCTATTGCTGGAGGCATCATACAAATAT

Protein sequence

MGNISMTLIYNTWWTLFAEGETFVSDSSEYQILWIQIAAISIFILPRQKASKPKAQPRLHRERGSKKLSSFDKNGKMTQQPVSEVASNLQESSGIEKKTSIIDGTILLLEASYKY

Homology

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BLAST of Lsi06G004360 vs. NCBI nr
Match: KAG6588151.1 (hypothetical protein SDJN03_16716, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 72.4 bits (176), Expect = 2.9e-09
Identity = 42/67 (62.69%), Postives = 49/67 (73.13%), Query Frame = 0


Query: 15 TLFAE---------GETFVSDSSEYQILWIQIAAISIFILPRQKASKPKAQPRLHRERGS 73
          TLFA+         G TFVSDS EYQIL I I AISIFILP+QKASK K++ R HR+RGS
Sbjct: 3  TLFAQVKTQGGGEGGHTFVSDSGEYQILRIWIVAISIFILPQQKASKLKSKTRFHRKRGS 62

The following BLAST results are available for this feature:

BLAST of Lsi06G004360 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi06G004360 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi06G004360 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6588151.1	2.9e-09	62.69	hypothetical protein SDJN03_16716, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Lsi06G004360 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 55..70
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 49..83

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi06G004360.1	Lsi06G004360.1	mRNA