Lsi06G003390 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi06G003390
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	RING-box protein 1a
Location	chr06: 3767053 .. 3768178 (-)
RNA-Seq Expression	Lsi06G003390
Synteny	Lsi06G003390

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTACGTTGGATACCGATGTTCCTATGGTTCCCGCTGGTGAAGCTTCAAGTAGTGCTGGCCCTTCGTCATCCAAAAAACCTAAGCGATTCGAGATCAAAAAGTGGAATGCTGTCGCTCTCTGGGCTTGGGGTATTTCGAAACCCTAATTTCAACTTCTCTGATCTCTTTTAGATTCCTTTCGCCTTTGGATGTTTCTTACTGATTCTTATCGTTGTTGTAACTTAATTATAATTTACTTGTGCAGATATTGTTGTCGATAACTGTGCAATTTGTAGGAATCACATAATGGATCTTTGTAAGTTGAAGGAGTTTTAAATTTTTCTTTAATTCTAGATGCAGTTTTGGATGATAATTTGATGTTTCTCACTGTTGTTCATCTATGATTGGTTTGGAGTTTAGGCATTGAATGTCAGGCGAATCAAGCAAGTGCCACTAGTGAGGAATGTACTGTCGCCTGGGGTATGCTATTACGCCTCTTTTTCCGAAACCTTAATTTTGATTTTATTTTCCTTGTTTGAGATGGTTTGGAGCTCTGTCTGCTATATTTTCTTTCCTTTTATGTGAAATACGTCCAGTTTGTCTATGTATTGTTTGTGCATTTTGCAATTGCAGCAGCCTTGTGATATTAGTCTCATTGATTTGGAAAATCATACCGACTTCCTGAGCTACAATTTTTTCTTAATAATTAAACTGATAAACAATACCAATTGTCTTCTTGAATGGACCTTTCTTTTCTTTGTTTCATGCGGATGAATGGAAGCTACTTTAAACTTTAGAAGTTTCATATCAATCTAGGATTCCAATTGGTGGTTTGTCTTTACCATTTGACCTCTTGTGTTATTGTGGTAGTTTCTATTGGGGATTAGGCCTTTATCTGCTTCTGTGTATTGGGTTTGGTCTTTATTAAAATTCTTGTATGCAGGGGTATGCAACCATGCTTTTCACTTCCACTGCATTAGTCGTTGGTTGAAGACTCGCCAAGTTTGTCCATTGGGTATACTTTAATATGCTTTAATGTTTCTAATTCATAGAACTCTATGAAAATTCTGCTCCTTTTTTATTGAATTCTTGTTATGTTTTTCAGATAACAGCGAATGGGAGTTCCAGAAGTATGGGCATTAG

mRNA sequence

ATGGCTACGTTGGATACCGATGTTCCTATGGTTCCCGCTGGTGAAGCTTCAAGTAGTGCTGGCCCTTCGTCATCCAAAAAACCTAAGCGATTCGAGATCAAAAAGTGGAATGCTGTCGCTCTCTGGGCTTGGGATATTGTTGTCGATAACTGTGCAATTTGTAGGAATCACATAATGGATCTTTGCATTGAATGTCAGGCGAATCAAGCAAGTGCCACTAGTGAGGAATGTACTGTCGCCTGGGGGGTATGCAACCATGCTTTTCACTTCCACTGCATTAGTCGTTGGTTGAAGACTCGCCAAGTTTGTCCATTGGATAACAGCGAATGGGAGTTCCAGAAGTATGGGCATTAG

Coding sequence (CDS)

ATGGCTACGTTGGATACCGATGTTCCTATGGTTCCCGCTGGTGAAGCTTCAAGTAGTGCTGGCCCTTCGTCATCCAAAAAACCTAAGCGATTCGAGATCAAAAAGTGGAATGCTGTCGCTCTCTGGGCTTGGGATATTGTTGTCGATAACTGTGCAATTTGTAGGAATCACATAATGGATCTTTGCATTGAATGTCAGGCGAATCAAGCAAGTGCCACTAGTGAGGAATGTACTGTCGCCTGGGGGGTATGCAACCATGCTTTTCACTTCCACTGCATTAGTCGTTGGTTGAAGACTCGCCAAGTTTGTCCATTGGATAACAGCGAATGGGAGTTCCAGAAGTATGGGCATTAG

Protein sequence

MATLDTDVPMVPAGEASSSAGPSSSKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH

Homology

[Close]

BLAST of Lsi06G003390 vs. ExPASy Swiss-Prot
Match: Q940X7 (RING-box protein 1a OS=Arabidopsis thaliana OX=3702 GN=RBX1A PE=1 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 2.0e-61
Identity = 109/118 (92.37%), Postives = 113/118 (95.76%), Query Frame = 0


Query: 1   MATLDTDVPMVPAGEASSS-AGPSSSKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIM 60
           MATLD+DV M+PAGEASSS A  SS+KK KRFEIKKW+AVALWAWDIVVDNCAICRNHIM
Sbjct: 1   MATLDSDVTMIPAGEASSSVAASSSNKKAKRFEIKKWSAVALWAWDIVVDNCAICRNHIM 60

Query: 61  DLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 118
           DLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH
Sbjct: 61  DLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 118

[Close]

BLAST of Lsi06G003390 vs. ExPASy Swiss-Prot
Match: Q9M2B0 (RING-box protein 1b OS=Arabidopsis thaliana OX=3702 GN=RBX1B PE=2 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 2.6e-53
Identity = 99/118 (83.90%), Postives = 106/118 (89.83%), Query Frame = 0


Query: 1   MATLDTDVPMVPAGEASSSAGP-SSSKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIM 60
           MA+L++DV M   GE+SS + P SSSK  KRFE+KKW+AVALWAWDIVVDNCAICRNHIM
Sbjct: 1   MASLNSDVIM---GESSSISVPSSSSKNSKRFELKKWSAVALWAWDIVVDNCAICRNHIM 60

Query: 61  DLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 118
           DLCIEC ANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLD  EWEFQKYGH
Sbjct: 61  DLCIECLANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDVCEWEFQKYGH 115

[Close]

BLAST of Lsi06G003390 vs. ExPASy Swiss-Prot
Match: P62877 (E3 ubiquitin-protein ligase RBX1 OS=Homo sapiens OX=9606 GN=RBX1 PE=1 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 9.9e-53
Identity = 91/108 (84.26%), Postives = 96/108 (88.89%), Query Frame = 0


Query: 10  MVPAGEASSSAGPSSSKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQ 69
           M  A +  + +G +S    KRFE+KKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQ
Sbjct: 1   MAAAMDVDTPSGTNSGAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQ 60

Query: 70  ASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 118
           ASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDN EWEFQKYGH
Sbjct: 61  ASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQKYGH 108

[Close]

BLAST of Lsi06G003390 vs. ExPASy Swiss-Prot
Match: P62878 (E3 ubiquitin-protein ligase RBX1 OS=Mus musculus OX=10090 GN=Rbx1 PE=1 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 9.9e-53
Identity = 91/108 (84.26%), Postives = 96/108 (88.89%), Query Frame = 0


Query: 10  MVPAGEASSSAGPSSSKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQ 69
           M  A +  + +G +S    KRFE+KKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQ
Sbjct: 1   MAAAMDVDTPSGTNSGAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQ 60

Query: 70  ASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 118
           ASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDN EWEFQKYGH
Sbjct: 61  ASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQKYGH 108

[Close]

BLAST of Lsi06G003390 vs. ExPASy Swiss-Prot
Match: Q8QG64 (RING-box protein 1 OS=Salmo salar OX=8030 GN=rbx1 PE=2 SV=2)

HSP 1 Score: 205.7 bits (522), Expect = 2.9e-52
Identity = 90/108 (83.33%), Postives = 95/108 (87.96%), Query Frame = 0


Query: 10  MVPAGEASSSAGPSSSKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQ 69
           M  A +  + +  +S    KRFE+KKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQ
Sbjct: 1   MAAAMDVDTPSATNSGASKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQ 60

Query: 70  ASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 118
           ASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDN EWEFQKYGH
Sbjct: 61  ASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQKYGH 108

[Close]

BLAST of Lsi06G003390 vs. ExPASy TrEMBL
Match: A0A5D3CFD3 (RING-box protein 1a OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G001540 PE=4 SV=1)

HSP 1 Score: 257.3 bits (656), Expect = 3.1e-65
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0


Query: 1   MATLDTDVPMVPAGEASSSAGPSSSKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD 60
           MATLDTDVPMVPAGEASSSAGPSSSKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD
Sbjct: 1   MATLDTDVPMVPAGEASSSAGPSSSKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD 60

Query: 61  LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 118
           LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH
Sbjct: 61  LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 117

[Close]

BLAST of Lsi06G003390 vs. ExPASy TrEMBL
Match: A0A0A0LWN9 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G597030 PE=4 SV=1)

HSP 1 Score: 257.3 bits (656), Expect = 3.1e-65
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0


Query: 1   MATLDTDVPMVPAGEASSSAGPSSSKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD 60
           MATLDTDVPMVPAGEASSSAGPSSSKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD
Sbjct: 1   MATLDTDVPMVPAGEASSSAGPSSSKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD 60

Query: 61  LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 118
           LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH
Sbjct: 61  LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 117

[Close]

BLAST of Lsi06G003390 vs. ExPASy TrEMBL
Match: A0A1S3BQE3 (RING-box protein 1a OS=Cucumis melo OX=3656 GN=LOC103492371 PE=4 SV=1)

HSP 1 Score: 257.3 bits (656), Expect = 3.1e-65
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0


Query: 1   MATLDTDVPMVPAGEASSSAGPSSSKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD 60
           MATLDTDVPMVPAGEASSSAGPSSSKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD
Sbjct: 1   MATLDTDVPMVPAGEASSSAGPSSSKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD 60

Query: 61  LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 118
           LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH
Sbjct: 61  LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 117

[Close]

BLAST of Lsi06G003390 vs. ExPASy TrEMBL
Match: A0A6J1I027 (RING-box protein 1a OS=Cucurbita maxima OX=3661 GN=LOC111467761 PE=4 SV=1)

HSP 1 Score: 255.8 bits (652), Expect = 9.0e-65
Identity = 116/117 (99.15%), Postives = 117/117 (100.00%), Query Frame = 0


Query: 1   MATLDTDVPMVPAGEASSSAGPSSSKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD 60
           MATLD+DVPMVPAGEASSSAGPSSSKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD
Sbjct: 1   MATLDSDVPMVPAGEASSSAGPSSSKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD 60

Query: 61  LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 118
           LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH
Sbjct: 61  LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 117

[Close]

BLAST of Lsi06G003390 vs. ExPASy TrEMBL
Match: A0A6J1F460 (RING-box protein 1a OS=Cucurbita moschata OX=3662 GN=LOC111440096 PE=4 SV=1)

HSP 1 Score: 255.8 bits (652), Expect = 9.0e-65
Identity = 116/117 (99.15%), Postives = 117/117 (100.00%), Query Frame = 0


Query: 1   MATLDTDVPMVPAGEASSSAGPSSSKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD 60
           MATLD+DVPMVPAGEASSSAGPSSSKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD
Sbjct: 1   MATLDSDVPMVPAGEASSSAGPSSSKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD 60

Query: 61  LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 118
           LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH
Sbjct: 61  LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 117

[Close]

BLAST of Lsi06G003390 vs. NCBI nr
Match: XP_004144035.1 (RING-box protein 1a [Cucumis sativus] >XP_008450927.1 PREDICTED: RING-box protein 1a [Cucumis melo] >XP_038879722.1 RING-box protein 1a [Benincasa hispida] >KAA0055771.1 RING-box protein 1a [Cucumis melo var. makuwa] >KGN66305.1 hypothetical protein Csa_007202 [Cucumis sativus] >TYK10022.1 RING-box protein 1a [Cucumis melo var. makuwa])

HSP 1 Score: 257.3 bits (656), Expect = 6.4e-65
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0


Query: 1   MATLDTDVPMVPAGEASSSAGPSSSKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD 60
           MATLDTDVPMVPAGEASSSAGPSSSKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD
Sbjct: 1   MATLDTDVPMVPAGEASSSAGPSSSKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD 60

Query: 61  LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 118
           LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH
Sbjct: 61  LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 117

[Close]

BLAST of Lsi06G003390 vs. NCBI nr
Match: XP_022933228.1 (RING-box protein 1a [Cucurbita moschata] >XP_022960807.1 RING-box protein 1a [Cucurbita moschata] >XP_022968584.1 RING-box protein 1a [Cucurbita maxima] >XP_022988432.1 RING-box protein 1a [Cucurbita maxima] >XP_023515504.1 RING-box protein 1a [Cucurbita pepo subsp. pepo] >XP_023530609.1 RING-box protein 1a [Cucurbita pepo subsp. pepo] >KAG6588086.1 RING-box protein 1a, partial [Cucurbita argyrosperma subsp. sororia] >KAG7021972.1 RING-box protein 1a, partial [Cucurbita argyrosperma subsp. argyrosperma] >KAG6590039.1 RING-box protein 1a, partial [Cucurbita argyrosperma subsp. sororia] >KAG7023702.1 RING-box protein 1a [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 255.8 bits (652), Expect = 1.9e-64
Identity = 116/117 (99.15%), Postives = 117/117 (100.00%), Query Frame = 0


Query: 1   MATLDTDVPMVPAGEASSSAGPSSSKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD 60
           MATLD+DVPMVPAGEASSSAGPSSSKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD
Sbjct: 1   MATLDSDVPMVPAGEASSSAGPSSSKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD 60

Query: 61  LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 118
           LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH
Sbjct: 61  LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 117

[Close]

BLAST of Lsi06G003390 vs. NCBI nr
Match: XP_038889977.1 (RING-box protein 1a-like isoform X1 [Benincasa hispida])

HSP 1 Score: 253.4 bits (646), Expect = 9.2e-64
Identity = 114/117 (97.44%), Postives = 117/117 (100.00%), Query Frame = 0


Query: 1   MATLDTDVPMVPAGEASSSAGPSSSKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD 60
           MATLD+DVPMVPAG+ASSSAGPSS+KKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD
Sbjct: 1   MATLDSDVPMVPAGDASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD 60

Query: 61  LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 118
           LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH
Sbjct: 61  LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 117

[Close]

BLAST of Lsi06G003390 vs. NCBI nr
Match: XP_015889019.1 (RING-box protein 1a [Ziziphus jujuba] >XP_022154746.1 RING-box protein 1a-like [Momordica charantia])

HSP 1 Score: 253.1 bits (645), Expect = 1.2e-63
Identity = 114/117 (97.44%), Postives = 116/117 (99.15%), Query Frame = 0


Query: 1   MATLDTDVPMVPAGEASSSAGPSSSKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD 60
           MATLD+DVPMVP GEASSSAGPSS+KKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD
Sbjct: 1   MATLDSDVPMVPVGEASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD 60

Query: 61  LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 118
           LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH
Sbjct: 61  LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 117

[Close]

BLAST of Lsi06G003390 vs. NCBI nr
Match: XP_008342455.1 (RING-box protein 1a [Malus domestica] >XP_008375895.1 RING-box protein 1a [Malus domestica] >XP_009375862.1 PREDICTED: RING-box protein 1a [Pyrus x bretschneideri] >KAB2595551.1 RING-box protein 1a [Pyrus ussuriensis x Pyrus communis] >TQD69625.1 hypothetical protein C1H46_044843 [Malus baccata] >KAB2595590.1 RING-box protein 1a [Pyrus ussuriensis x Pyrus communis] >KAB2626676.1 RING-box protein 1a [Pyrus ussuriensis x Pyrus communis] >RXH93564.1 hypothetical protein DVH24_014140 [Malus domestica])

HSP 1 Score: 252.7 bits (644), Expect = 1.6e-63
Identity = 113/117 (96.58%), Postives = 116/117 (99.15%), Query Frame = 0


Query: 1   MATLDTDVPMVPAGEASSSAGPSSSKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD 60
           MATLD+DVPM+PAGE SSSAGPSS+KKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD
Sbjct: 1   MATLDSDVPMIPAGEGSSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD 60

Query: 61  LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 118
           LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH
Sbjct: 61  LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 117

[Close]

BLAST of Lsi06G003390 vs. TAIR 10
Match: AT5G20570.1 (RING-box 1 )

HSP 1 Score: 236.1 bits (601), Expect = 1.4e-62
Identity = 109/118 (92.37%), Postives = 113/118 (95.76%), Query Frame = 0


Query: 1   MATLDTDVPMVPAGEASSS-AGPSSSKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIM 60
           MATLD+DV M+PAGEASSS A  SS+KK KRFEIKKW+AVALWAWDIVVDNCAICRNHIM
Sbjct: 1   MATLDSDVTMIPAGEASSSVAASSSNKKAKRFEIKKWSAVALWAWDIVVDNCAICRNHIM 60

Query: 61  DLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 118
           DLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH
Sbjct: 61  DLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 118

[Close]

BLAST of Lsi06G003390 vs. TAIR 10
Match: AT5G20570.2 (RING-box 1 )

HSP 1 Score: 222.6 bits (566), Expect = 1.6e-58
Identity = 109/142 (76.76%), Postives = 113/142 (79.58%), Query Frame = 0


Query: 1   MATLDTDVPMVPAGEASSS-AGPSSSKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIM 60
           MATLD+DV M+PAGEASSS A  SS+KK KRFEIKKW+AVALWAWDIVVDNCAICRNHIM
Sbjct: 1   MATLDSDVTMIPAGEASSSVAASSSNKKAKRFEIKKWSAVALWAWDIVVDNCAICRNHIM 60

Query: 61  DLCIECQANQASATSEECTVAW------------------------GVCNHAFHFHCISR 118
           DLCIECQANQASATSEECTVAW                        GVCNHAFHFHCISR
Sbjct: 61  DLCIECQANQASATSEECTVAWEDDQNNCNKYFCILDCSMKDDHLEGVCNHAFHFHCISR 120

[Close]

BLAST of Lsi06G003390 vs. TAIR 10
Match: AT5G20570.3 (RING-box 1 )

HSP 1 Score: 222.2 bits (565), Expect = 2.1e-58
Identity = 108/136 (79.41%), Postives = 112/136 (82.35%), Query Frame = 0


Query: 1   MATLDTDVPMVPAGEASSS-AGPSSSKKPKRFEIKKWNAVALWAWD-------------- 60
           MATLD+DV M+PAGEASSS A  SS+KK KRFEIKKW+AVALWAW               
Sbjct: 1   MATLDSDVTMIPAGEASSSVAASSSNKKAKRFEIKKWSAVALWAWGNLENPYTLSSIGLS 60

Query: 61  ----IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQ 118
               IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQ
Sbjct: 61  MFRYIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQ 120

[Close]

BLAST of Lsi06G003390 vs. TAIR 10
Match: AT3G42830.1 (RING/U-box superfamily protein )

HSP 1 Score: 209.1 bits (531), Expect = 1.9e-54
Identity = 99/118 (83.90%), Postives = 106/118 (89.83%), Query Frame = 0


Query: 1   MATLDTDVPMVPAGEASSSAGP-SSSKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIM 60
           MA+L++DV M   GE+SS + P SSSK  KRFE+KKW+AVALWAWDIVVDNCAICRNHIM
Sbjct: 1   MASLNSDVIM---GESSSISVPSSSSKNSKRFELKKWSAVALWAWDIVVDNCAICRNHIM 60

Query: 61  DLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 118
           DLCIEC ANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLD  EWEFQKYGH
Sbjct: 61  DLCIECLANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDVCEWEFQKYGH 115

[Close]

BLAST of Lsi06G003390 vs. TAIR 10
Match: AT3G05870.1 (anaphase-promoting complex/cyclosome 11 )

HSP 1 Score: 81.3 bits (199), Expect = 5.8e-16
Identity = 36/91 (39.56%), Postives = 50/91 (54.95%), Query Frame = 0


Query: 27  KPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNH 86
           K K   I  W+AVA W WD   + C ICR      C +C+        ++C + WG CNH
Sbjct: 2   KVKILRILLWHAVASWTWDAQDETCGICRMAFDGCCPDCK-----LPGDDCPLIWGACNH 61

Query: 87  AFHFHCISRWL--KTRQV-CPLDNSEWEFQK 115
           AFH HCI +W+  +T Q  CP+   EW+F++
Sbjct: 62  AFHLHCILKWVNSQTSQAHCPMCRREWQFKE 87

The following BLAST results are available for this feature:

BLAST of Lsi06G003390 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q940X7	2.0e-61	92.37	RING-box protein 1a OS=Arabidopsis thaliana OX=3702 GN=RBX1A PE=1 SV=1	[more]
Q9M2B0	2.6e-53	83.90	RING-box protein 1b OS=Arabidopsis thaliana OX=3702 GN=RBX1B PE=2 SV=1	[more]
P62877	9.9e-53	84.26	E3 ubiquitin-protein ligase RBX1 OS=Homo sapiens OX=9606 GN=RBX1 PE=1 SV=1	[more]
P62878	9.9e-53	84.26	E3 ubiquitin-protein ligase RBX1 OS=Mus musculus OX=10090 GN=Rbx1 PE=1 SV=1	[more]
Q8QG64	2.9e-52	83.33	RING-box protein 1 OS=Salmo salar OX=8030 GN=rbx1 PE=2 SV=2	[more]

BLAST of Lsi06G003390 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CFD3	3.1e-65	100.00	RING-box protein 1a OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G0...	[more]
A0A0A0LWN9	3.1e-65	100.00	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G597030 P...	[more]
A0A1S3BQE3	3.1e-65	100.00	RING-box protein 1a OS=Cucumis melo OX=3656 GN=LOC103492371 PE=4 SV=1	[more]
A0A6J1I027	9.0e-65	99.15	RING-box protein 1a OS=Cucurbita maxima OX=3661 GN=LOC111467761 PE=4 SV=1	[more]
A0A6J1F460	9.0e-65	99.15	RING-box protein 1a OS=Cucurbita moschata OX=3662 GN=LOC111440096 PE=4 SV=1	[more]

BLAST of Lsi06G003390 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004144035.1	6.4e-65	100.00	RING-box protein 1a [Cucumis sativus] >XP_008450927.1 PREDICTED: RING-box protei...	[more]
XP_022933228.1	1.9e-64	99.15	RING-box protein 1a [Cucurbita moschata] >XP_022960807.1 RING-box protein 1a [Cu...	[more]
XP_038889977.1	9.2e-64	97.44	RING-box protein 1a-like isoform X1 [Benincasa hispida]	[more]
XP_015889019.1	1.2e-63	97.44	RING-box protein 1a [Ziziphus jujuba] >XP_022154746.1 RING-box protein 1a-like [...	[more]
XP_008342455.1	1.6e-63	96.58	RING-box protein 1a [Malus domestica] >XP_008375895.1 RING-box protein 1a [Malus...	[more]

BLAST of Lsi06G003390 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G20570.1	1.4e-62	92.37	RING-box 1	[more]
AT5G20570.2	1.6e-58	76.76	RING-box 1	[more]
AT5G20570.3	2.1e-58	79.41	RING-box 1	[more]
AT3G42830.1	1.9e-54	83.90	RING/U-box superfamily protein	[more]
AT3G05870.1	5.8e-16	39.56	anaphase-promoting complex/cyclosome 11	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR024766	Zinc finger, RING-H2-type	PFAM	PF12678	zf-rbx1	coord: 49..107 e-value: 1.9E-25 score: 88.9
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 18..117 e-value: 1.1E-35 score: 123.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..29
None	No IPR available	PANTHER	PTHR11210:SF41	E3 UBIQUITIN-PROTEIN LIGASE RBX1	coord: 1..117
None	No IPR available	PANTHER	PTHR11210	RING BOX	coord: 1..117
None	No IPR available	CDD	cd16485	mRING-H2-C3H2C2D_RBX1	coord: 49..110 e-value: 2.65536E-44 score: 136.73
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 29..114
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 62..107 score: 9.30263

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi06G003390.1	Lsi06G003390.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016310	phosphorylation
biological_process	GO:0016567	protein ubiquitination
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
cellular_component	GO:0031461	cullin-RING ubiquitin ligase complex
cellular_component	GO:0005634	nucleus
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0097602	cullin family protein binding
molecular_function	GO:0016301	kinase activity
molecular_function	GO:0016462	pyrophosphatase activity
molecular_function	GO:0061630	ubiquitin protein ligase activity
molecular_function	GO:0008270	zinc ion binding