Lsi06G002920 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi06G002920
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description30S ribosomal protein S16
Locationchr06: 3355257 .. 3356957 (-)
RNA-Seq ExpressionLsi06G002920
SyntenyLsi06G002920
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGGTTCGAATTCGATTGTCCAGGTTTGGTTGTAAGAACAAGCCGTTTTACAGGGTGATGGCTGCTGATAGCCGATATCCTCGAGACGGCAAACATCTCGAGGTTCTAGGTTACTATAATCCCCTGCCAGGTTAATTGATTGATGACTTCTGCTACTCGTGTATTGGAATTTAGATTCTTGATTTGAATATTTCATTTCTGTTATTGATTTGAGTAATTTTTGTTTGCAGGTCAAGATGGTGGTAAACGAATGGGTCTGAATTTTGAAAGAGTGAAGTAAGTGATTGCTTTTGATTTATTTACACTACTTCATTCTAAGATATGCTTGGTTCTTGAATTTAAACGCTGGGTTGCAATTGTTAGTGCTAGTTTACTTGTTAATCAGAATAGAGTACTCTTTCGTCATTGCTTCTTCAATCGACTTTTACTTGAATTTTTTTCCGAATTCTCGATCTTTCTCCACATTGCTTTGAGTGTTATTAAGAGAATGGCCAACTGACAATTTAAGCTTTTAATTAGAATCAGTTAACAAAACAAGCTAGCTGAAACTTGTAAGGTCTAGTAGTGAAGCTACGTGCCCTTGAAACAAAAGGTCCTAATTCCAAATTCATGCTATATTAGTTTCTATACCATTTCATGCTAAAAGTTCACATCTTGCACCTTACGAATCAAAGAGTTAAAGTCATTTTTGTAATTATTCTTTAGGCGACAATTTACATAGTTGGCTACCCCCTTTCTTCAGGGGAGTTTTTTTTTTTTTGCTTGGTTTTTTGTATACCCTTGTTTAAGTGTATGTTGTCTTAATAACCTTAGCTTTTGAATTCAGTGGTGATTTAATAGGTTAGGAGTTTGAGGGGAGACTACATTTTCTAGTGATGAAGGTATTAATGAAAGAGTGAAAAAGGGGATATGGTTATCAAGTTGATGGAGACGATGAGGAAATGCTTACTTTTTAGAGCATCTAGTCATTTTATGAAGTAATTATGCTGCCCCTTAGGAATGTAGAATCTGGTGTTTGCTATCTTTTGCATTTCTAATTCAAGTTATGATTATTGATTAGTAAACAGCTCAGAGGATAAAACGTTTAAGATGAAATGTTATCTAAGAAGATCATTCTTATTGTACGGTCTTGACTCTTGTGCAACGCATATAAGTAAACCATAAGGTATATAAGTTTTTAGCAGTTAGAGTTTGGTCTCTGGTTTCTTTGTGGCTTAGAGCCCATCAGTTTACTATTCCTCCAATTCCTCGATTGCTATAAACACTTTCGTCGACCTTCTTTTTTTTTTTTTTGGGTAACACCTCTCTTCATTTTAAGGTCCTGTATTTCAAAAAGAGTTGCTATAAGCTGAGATTGGATAATTTAGACTATTTTACTGCATAAGCTTTGCTGTTTTACTGTGGTAGTATTCATTTCAAACTCATAGGTACCACAACCTCGTCTTTCATACTAATCATTCACTCATCACTCCCTCCCATCCTTCTAGGTATTGGCTTTCAGTTGGTGCTCAGCCTTCAGACCCCGTGCAGCGTATTCTTTTTAGAGCAGGGGTTCTCCCACCACCCCCAATGGTTGCAATGGCACGTAAAGGCGGACCACGTGATACTCGTCCTGTCGATCCTCTGAGTGGACGCTTCATTACTCCAGAGAAGCCAACTGATGGTTCCAATGGCAAAGATGGCAATGCTGATTCATAA

mRNA sequence

ATGGTGGTTCGAATTCGATTGTCCAGGTTTGGTTGTAAGAACAAGCCGTTTTACAGGGTGATGGCTGCTGATAGCCGATATCCTCGAGACGGCAAACATCTCGAGGTTCTAGGTTACTATAATCCCCTGCCAGGTCAAGATGGTGGTAAACGAATGGGTCTGAATTTTGAAAGAGTGAAGTACCACAACCTCGTCTTTCATACTAATCATTCACTCATCACTCCCTCCCATCCTTCTAGGTATTGGCTTTCAGTTGGTGCTCAGCCTTCAGACCCCGTGCAGCGTATTCTTTTTAGAGCAGGGGTTCTCCCACCACCCCCAATGGTTGCAATGGCACGTAAAGGCGGACCACGTGATACTCGTCCTGTCGATCCTCTGAGTGGACGCTTCATTACTCCAGAGAAGCCAACTGATGGTTCCAATGGCAAAGATGGCAATGCTGATTCATAA

Coding sequence (CDS)

ATGGTGGTTCGAATTCGATTGTCCAGGTTTGGTTGTAAGAACAAGCCGTTTTACAGGGTGATGGCTGCTGATAGCCGATATCCTCGAGACGGCAAACATCTCGAGGTTCTAGGTTACTATAATCCCCTGCCAGGTCAAGATGGTGGTAAACGAATGGGTCTGAATTTTGAAAGAGTGAAGTACCACAACCTCGTCTTTCATACTAATCATTCACTCATCACTCCCTCCCATCCTTCTAGGTATTGGCTTTCAGTTGGTGCTCAGCCTTCAGACCCCGTGCAGCGTATTCTTTTTAGAGCAGGGGTTCTCCCACCACCCCCAATGGTTGCAATGGCACGTAAAGGCGGACCACGTGATACTCGTCCTGTCGATCCTCTGAGTGGACGCTTCATTACTCCAGAGAAGCCAACTGATGGTTCCAATGGCAAAGATGGCAATGCTGATTCATAA

Protein sequence

MVVRIRLSRFGCKNKPFYRVMAADSRYPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYHNLVFHTNHSLITPSHPSRYWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDTRPVDPLSGRFITPEKPTDGSNGKDGNADS
Homology
[Close]
BLAST of Lsi06G002920 vs. ExPASy Swiss-Prot
Match: Q9LTS6 (30S ribosomal protein S16-2, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RPS16-2 PE=1 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 2.4e-51
Identity = 98/141 (69.50%), Postives = 111/141 (78.72%), Query Frame = 0 

Query: 1   MVVRIRLSRFGCKNKPFYRVMAADSRYPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK 60
           MVVRIRLSRFGCKN+PF+RVMAADSR PRDGKHLEVLGY+NPLPGQDGGKRMGL F+R+K
Sbjct: 1   MVVRIRLSRFGCKNRPFFRVMAADSRSPRDGKHLEVLGYFNPLPGQDGGKRMGLKFDRIK 60

Query: 61  YHNLVFHTNHSLITPSHPSRYWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDT 120
                               YWLSVGAQPSDPVQR+LFR+G+LPPPPMVAM RKGG RDT
Sbjct: 61  --------------------YWLSVGAQPSDPVQRLLFRSGLLPPPPMVAMGRKGGARDT 120

Query: 121 RPVDPLSGRFITPEKPTDGSN 142
           RPVDP++GR++  E  T  +N
Sbjct: 121 RPVDPMTGRYVDAENKTVNAN 121

[Close]
BLAST of Lsi06G002920 vs. ExPASy Swiss-Prot
Match: O65686 (30S ribosomal protein S16-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS16-1 PE=2 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 1.8e-27
Identity = 60/132 (45.45%), Postives = 85/132 (64.39%), Query Frame = 0 

Query: 1   MVVRIRLSRFGCKNKPFYRVMAADSRYPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK 60
           M V+IRL+R GCK++PFYRV+ AD +  RDGK +EVLG+Y+PL G++   R+ L F+R+K
Sbjct: 1   MTVKIRLARLGCKHRPFYRVVVADEKSRRDGKQIEVLGFYDPLQGKEDADRVSLKFDRIK 60

Query: 61  YHNLVFHTNHSLITPSHPSRYWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDT 120
                               YWLSVGAQP+D V+ +LFRAG++PP PMV +  K G + T
Sbjct: 61  --------------------YWLSVGAQPTDTVESMLFRAGLIPPKPMVVVGSKNGQKST 112

Query: 121 -RPVDPLSGRFI 132
            + V P++G  +
Sbjct: 121 SQHVSPITGEIL 112

[Close]
BLAST of Lsi06G002920 vs. ExPASy Swiss-Prot
Match: A8LMC0 (30S ribosomal protein S16 OS=Dinoroseobacter shibae (strain DSM 16493 / NCIMB 14021 / DFL 12) OX=398580 GN=rpsP PE=3 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 3.3e-16
Identity = 46/104 (44.23%), Postives = 62/104 (59.62%), Query Frame = 0 

Query: 1   MVVRIRLSRFGCKNKPFYRVMAADSRYPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK 60
           M ++IRL+R G K +PFYR++AADSR PRDG+ +E LG YNPL  +D   R+ ++ ERV 
Sbjct: 1   MAMKIRLARGGSKKRPFYRIVAADSRMPRDGRFIEKLGTYNPLLPKDSEDRVKMDLERV- 60

Query: 61  YHNLVFHTNHSLITPSHPSRYWLSVGAQPSDPVQRILFRAGVLP 105
                              +YWL  GA+P+D V R+L  A VLP
Sbjct: 61  -------------------QYWLGEGAKPTDRVARMLEAAEVLP 84

[Close]
BLAST of Lsi06G002920 vs. ExPASy Swiss-Prot
Match: Q5LNF2 (30S ribosomal protein S16 OS=Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) OX=246200 GN=rpsP PE=3 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 3.3e-16
Identity = 46/103 (44.66%), Postives = 63/103 (61.17%), Query Frame = 0 

Query: 1   MVVRIRLSRFGCKNKPFYRVMAADSRYPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK 60
           M ++IRL+R G K +PFYR++AADSR PRDG+ +E LG YNPL  +D  +R+ ++ ERV 
Sbjct: 1   MAMKIRLARGGSKKRPFYRIVAADSRMPRDGRFIEKLGTYNPLLPKDSEERVKMDVERV- 60

Query: 61  YHNLVFHTNHSLITPSHPSRYWLSVGAQPSDPVQRILFRAGVL 104
                              +YWLS GAQ +D V R+L  AGV+
Sbjct: 61  -------------------QYWLSQGAQTTDRVARMLEAAGVV 83

[Close]
BLAST of Lsi06G002920 vs. ExPASy Swiss-Prot
Match: Q16AN8 (30S ribosomal protein S16 OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) OX=375451 GN=rpsP PE=3 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 4.3e-16
Identity = 45/102 (44.12%), Postives = 62/102 (60.78%), Query Frame = 0 

Query: 1   MVVRIRLSRFGCKNKPFYRVMAADSRYPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK 60
           M ++IRL+R G K +PFYR++AADSR PRDG+ +E LG YNPL  +D  +R+ ++ ERV 
Sbjct: 1   MAMKIRLARGGSKKRPFYRIVAADSRMPRDGRFIEKLGTYNPLLPKDSEERVKMDAERV- 60

Query: 61  YHNLVFHTNHSLITPSHPSRYWLSVGAQPSDPVQRILFRAGV 103
                              +YWL  GAQP+D V R+L  AG+
Sbjct: 61  -------------------QYWLGQGAQPTDRVARMLEAAGL 82

[Close]
BLAST of Lsi06G002920 vs. ExPASy TrEMBL
Match: A0A6J1D251 (30S ribosomal protein S16-2, chloroplastic/mitochondrial OS=Momordica charantia OX=3673 GN=LOC111016603 PE=3 SV=1)

HSP 1 Score: 245.0 bits (624), Expect = 2.0e-61
Identity = 122/149 (81.88%), Postives = 126/149 (84.56%), Query Frame = 0 

Query: 1   MVVRIRLSRFGCKNKPFYRVMAADSRYPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK 60
           MVVR+RLSRFGCKNKPFYRVMAADSR PRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK
Sbjct: 1   MVVRLRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK 60

Query: 61  YHNLVFHTNHSLITPSHPSRYWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDT 120
                               YWLSVGAQPS+PVQRILFRAGVLPPPPMVAMARKGGPRDT
Sbjct: 61  --------------------YWLSVGAQPSEPVQRILFRAGVLPPPPMVAMARKGGPRDT 120

Query: 121 RPVDPLSGRFITPEKPTDGSNGKDGNADS 150
           RPVDPLSGRF+TPEKPTD S+ KDGNADS
Sbjct: 121 RPVDPLSGRFVTPEKPTDDSSSKDGNADS 129

[Close]
BLAST of Lsi06G002920 vs. ExPASy TrEMBL
Match: A0A6J1HXD7 (30S ribosomal protein S16-2, chloroplastic/mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111467724 PE=3 SV=1)

HSP 1 Score: 236.9 bits (603), Expect = 5.5e-59
Identity = 122/150 (81.33%), Postives = 124/150 (82.67%), Query Frame = 0 

Query: 1   MVVRIRLSRFGCKNKPFYRVMAADSRYPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK 60
           MVVRIRLSRFGCKNKPFYRVMAADSR PRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK
Sbjct: 1   MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK 60

Query: 61  YHNLVFHTNHSLITPSHPSRYWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDT 120
                               YWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDT
Sbjct: 61  --------------------YWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDT 120

Query: 121 RPVDPLSGRFITPEKPTDGSN-GKDGNADS 150
           RPVDPLSGRF TP+K TD SN  KDG+ADS
Sbjct: 121 RPVDPLSGRFTTPQKATDDSNSSKDGDADS 130

[Close]
BLAST of Lsi06G002920 vs. ExPASy TrEMBL
Match: A0A6J1F6D0 (30S ribosomal protein S16-2, chloroplastic/mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111441226 PE=3 SV=1)

HSP 1 Score: 236.9 bits (603), Expect = 5.5e-59
Identity = 122/150 (81.33%), Postives = 124/150 (82.67%), Query Frame = 0 

Query: 1   MVVRIRLSRFGCKNKPFYRVMAADSRYPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK 60
           MVVRIRLSRFGCKNKPFYRVMAADSR PRDGKHLEVLGYY+PLPGQDGGKRMGLNFERVK
Sbjct: 1   MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYHPLPGQDGGKRMGLNFERVK 60

Query: 61  YHNLVFHTNHSLITPSHPSRYWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDT 120
                               YWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDT
Sbjct: 61  --------------------YWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDT 120

Query: 121 RPVDPLSGRFITPEKPTDGSN-GKDGNADS 150
           RPVDPLSGRF TP+K TD SN  KDGNADS
Sbjct: 121 RPVDPLSGRFTTPQKATDDSNSSKDGNADS 130

[Close]
BLAST of Lsi06G002920 vs. ExPASy TrEMBL
Match: A0A5D3CDW9 (30S ribosomal protein S16 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G001970 PE=3 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 1.6e-58
Identity = 118/150 (78.67%), Postives = 125/150 (83.33%), Query Frame = 0 

Query: 1   MVVRIRLSRFGCKNKPFYRVMAADSRYPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK 60
           MVVRIRLSRFGCKNKPFYRVMAADSR PRDGKHLE+LGYYNPLPGQDGGKRMG+NFERVK
Sbjct: 1   MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPGQDGGKRMGINFERVK 60

Query: 61  YHNLVFHTNHSLITPSHPSRYWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDT 120
                               YWLSVGAQPSDP+QRILFRAG+LPPPPMVAM RKGGPRDT
Sbjct: 61  --------------------YWLSVGAQPSDPMQRILFRAGLLPPPPMVAMGRKGGPRDT 120

Query: 121 RPVDPLSGRFITPE-KPTDGSNGKDGNADS 150
           RPVDPLSGRF+TPE KPTD SNG+ G+ADS
Sbjct: 121 RPVDPLSGRFVTPEKKPTDSSNGEVGDADS 130

[Close]
BLAST of Lsi06G002920 vs. ExPASy TrEMBL
Match: A0A1S3BQ70 (30S ribosomal protein S16 OS=Cucumis melo OX=3656 GN=LOC103492337 PE=3 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 1.6e-58
Identity = 118/150 (78.67%), Postives = 125/150 (83.33%), Query Frame = 0 

Query: 1   MVVRIRLSRFGCKNKPFYRVMAADSRYPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK 60
           MVVRIRLSRFGCKNKPFYRVMAADSR PRDGKHLE+LGYYNPLPGQDGGKRMG+NFERVK
Sbjct: 1   MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPGQDGGKRMGINFERVK 60

Query: 61  YHNLVFHTNHSLITPSHPSRYWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDT 120
                               YWLSVGAQPSDP+QRILFRAG+LPPPPMVAM RKGGPRDT
Sbjct: 61  --------------------YWLSVGAQPSDPMQRILFRAGLLPPPPMVAMGRKGGPRDT 120

Query: 121 RPVDPLSGRFITPE-KPTDGSNGKDGNADS 150
           RPVDPLSGRF+TPE KPTD SNG+ G+ADS
Sbjct: 121 RPVDPLSGRFVTPEKKPTDSSNGEVGDADS 130

[Close]
BLAST of Lsi06G002920 vs. NCBI nr
Match: XP_038880698.1 (30S ribosomal protein S16-2, chloroplastic/mitochondrial isoform X1 [Benincasa hispida])

HSP 1 Score: 266.5 bits (680), Expect = 1.3e-67
Identity = 131/149 (87.92%), Postives = 136/149 (91.28%), Query Frame = 0 

Query: 1   MVVRIRLSRFGCKNKPFYRVMAADSRYPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK 60
           MVVRIRLSRFGCKNKPFYRVMAADSR PRDGKHLEVLGYYNPLPGQDGGKRMGLNFERV 
Sbjct: 1   MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERV- 60

Query: 61  YHNLVFHTNHSLITPSHPSRYWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDT 120
                   NHS++T SHPSRYWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDT
Sbjct: 61  --------NHSVVTLSHPSRYWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDT 120

Query: 121 RPVDPLSGRFITPEKPTDGSNGKDGNADS 150
           R VDPLSGRF+TPEKPTD S+GKDG+ADS
Sbjct: 121 RLVDPLSGRFVTPEKPTDSSSGKDGDADS 140

[Close]
BLAST of Lsi06G002920 vs. NCBI nr
Match: XP_022147743.1 (30S ribosomal protein S16-2, chloroplastic/mitochondrial [Momordica charantia])

HSP 1 Score: 245.0 bits (624), Expect = 4.2e-61
Identity = 122/149 (81.88%), Postives = 126/149 (84.56%), Query Frame = 0 

Query: 1   MVVRIRLSRFGCKNKPFYRVMAADSRYPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK 60
           MVVR+RLSRFGCKNKPFYRVMAADSR PRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK
Sbjct: 1   MVVRLRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK 60

Query: 61  YHNLVFHTNHSLITPSHPSRYWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDT 120
                               YWLSVGAQPS+PVQRILFRAGVLPPPPMVAMARKGGPRDT
Sbjct: 61  --------------------YWLSVGAQPSEPVQRILFRAGVLPPPPMVAMARKGGPRDT 120

Query: 121 RPVDPLSGRFITPEKPTDGSNGKDGNADS 150
           RPVDPLSGRF+TPEKPTD S+ KDGNADS
Sbjct: 121 RPVDPLSGRFVTPEKPTDDSSSKDGNADS 129

[Close]
BLAST of Lsi06G002920 vs. NCBI nr
Match: XP_038880699.1 (30S ribosomal protein S16-2, chloroplastic/mitochondrial isoform X2 [Benincasa hispida])

HSP 1 Score: 244.2 bits (622), Expect = 7.1e-61
Identity = 123/149 (82.55%), Postives = 126/149 (84.56%), Query Frame = 0 

Query: 1   MVVRIRLSRFGCKNKPFYRVMAADSRYPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK 60
           MVVRIRLSRFGCKNKPFYRVMAADSR PRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK
Sbjct: 1   MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK 60

Query: 61  YHNLVFHTNHSLITPSHPSRYWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDT 120
                               YWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDT
Sbjct: 61  --------------------YWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDT 120

Query: 121 RPVDPLSGRFITPEKPTDGSNGKDGNADS 150
           R VDPLSGRF+TPEKPTD S+GKDG+ADS
Sbjct: 121 RLVDPLSGRFVTPEKPTDSSSGKDGDADS 129

[Close]
BLAST of Lsi06G002920 vs. NCBI nr
Match: XP_023516386.1 (30S ribosomal protein S16-2, chloroplastic/mitochondrial-like [Cucurbita pepo subsp. pepo] >XP_023516387.1 30S ribosomal protein S16-2, chloroplastic/mitochondrial-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 237.3 bits (604), Expect = 8.7e-59
Identity = 119/149 (79.87%), Postives = 124/149 (83.22%), Query Frame = 0 

Query: 1   MVVRIRLSRFGCKNKPFYRVMAADSRYPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK 60
           MVVRIRLSRFGCKNKPFYRVMAADSR PRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK
Sbjct: 1   MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK 60

Query: 61  YHNLVFHTNHSLITPSHPSRYWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDT 120
                               YWLSVGAQPS+PVQRILFR+GVLPPPPMVAMARKGGPRDT
Sbjct: 61  --------------------YWLSVGAQPSEPVQRILFRSGVLPPPPMVAMARKGGPRDT 120

Query: 121 RPVDPLSGRFITPEKPTDGSNGKDGNADS 150
           R VDPLSGR ++PEKPTD S+ KDGNADS
Sbjct: 121 RVVDPLSGRIVSPEKPTDDSSSKDGNADS 129

[Close]
BLAST of Lsi06G002920 vs. NCBI nr
Match: XP_023529314.1 (30S ribosomal protein S16-2, chloroplastic/mitochondrial-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 237.3 bits (604), Expect = 8.7e-59
Identity = 122/150 (81.33%), Postives = 124/150 (82.67%), Query Frame = 0 

Query: 1   MVVRIRLSRFGCKNKPFYRVMAADSRYPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK 60
           MVVRIRLSRFGCKNKPFYRVMAADSR PRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK
Sbjct: 1   MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK 60

Query: 61  YHNLVFHTNHSLITPSHPSRYWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDT 120
                               YWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRD+
Sbjct: 61  --------------------YWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDS 120

Query: 121 RPVDPLSGRFITPEKPTDGSNG-KDGNADS 150
           RPVDPLSGRF TP+K TD SN  KDGNADS
Sbjct: 121 RPVDPLSGRFTTPQKATDDSNSTKDGNADS 130

[Close]
BLAST of Lsi06G002920 vs. TAIR 10
Match: AT5G56940.1 (Ribosomal protein S16 family protein )

HSP 1 Score: 203.0 bits (515), Expect = 1.7e-52
Identity = 98/141 (69.50%), Postives = 111/141 (78.72%), Query Frame = 0 

Query: 1   MVVRIRLSRFGCKNKPFYRVMAADSRYPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK 60
           MVVRIRLSRFGCKN+PF+RVMAADSR PRDGKHLEVLGY+NPLPGQDGGKRMGL F+R+K
Sbjct: 1   MVVRIRLSRFGCKNRPFFRVMAADSRSPRDGKHLEVLGYFNPLPGQDGGKRMGLKFDRIK 60

Query: 61  YHNLVFHTNHSLITPSHPSRYWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDT 120
                               YWLSVGAQPSDPVQR+LFR+G+LPPPPMVAM RKGG RDT
Sbjct: 61  --------------------YWLSVGAQPSDPVQRLLFRSGLLPPPPMVAMGRKGGARDT 120

Query: 121 RPVDPLSGRFITPEKPTDGSN 142
           RPVDP++GR++  E  T  +N
Sbjct: 121 RPVDPMTGRYVDAENKTVNAN 121

[Close]
BLAST of Lsi06G002920 vs. TAIR 10
Match: AT4G34620.1 (small subunit ribosomal protein 16 )

HSP 1 Score: 123.6 bits (309), Expect = 1.3e-28
Identity = 60/132 (45.45%), Postives = 85/132 (64.39%), Query Frame = 0 

Query: 1   MVVRIRLSRFGCKNKPFYRVMAADSRYPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK 60
           M V+IRL+R GCK++PFYRV+ AD +  RDGK +EVLG+Y+PL G++   R+ L F+R+K
Sbjct: 1   MTVKIRLARLGCKHRPFYRVVVADEKSRRDGKQIEVLGFYDPLQGKEDADRVSLKFDRIK 60

Query: 61  YHNLVFHTNHSLITPSHPSRYWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDT 120
                               YWLSVGAQP+D V+ +LFRAG++PP PMV +  K G + T
Sbjct: 61  --------------------YWLSVGAQPTDTVESMLFRAGLIPPKPMVVVGSKNGQKST 112

Query: 121 -RPVDPLSGRFI 132
            + V P++G  +
Sbjct: 121 SQHVSPITGEIL 112

[Close]
BLAST of Lsi06G002920 vs. TAIR 10
Match: ATCG00050.1 (ribosomal protein S16 )

HSP 1 Score: 48.1 bits (113), Expect = 7.0e-06
Identity = 19/45 (42.22%), Postives = 31/45 (68.89%), Query Frame = 0 

Query: 2  VVRIRLSRFGCKNKPFYRVMAADSRYPRDGKHLEVLGYYNPLPGQ 47
          +V++RL R G K +  YR++A D RY R+G+ L  +G+Y+P+  Q
Sbjct: 1  MVKLRLKRCGRKQRAVYRILAIDVRYRREGRDLSKVGFYDPITNQ 45

The following BLAST results are available for this feature:
BLAST of Lsi06G002920 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9LTS62.4e-5169.5030S ribosomal protein S16-2, chloroplastic/mitochondrial OS=Arabidopsis thaliana... [more]
O656861.8e-2745.4530S ribosomal protein S16-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RP... [more]
A8LMC03.3e-1644.2330S ribosomal protein S16 OS=Dinoroseobacter shibae (strain DSM 16493 / NCIMB 14... [more]
Q5LNF23.3e-1644.6630S ribosomal protein S16 OS=Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 /... [more]
Q16AN84.3e-1644.1230S ribosomal protein S16 OS=Roseobacter denitrificans (strain ATCC 33942 / OCh ... [more]
BLAST of Lsi06G002920 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1D2512.0e-6181.8830S ribosomal protein S16-2, chloroplastic/mitochondrial OS=Momordica charantia ... [more]
A0A6J1HXD75.5e-5981.3330S ribosomal protein S16-2, chloroplastic/mitochondrial-like OS=Cucurbita maxim... [more]
A0A6J1F6D05.5e-5981.3330S ribosomal protein S16-2, chloroplastic/mitochondrial-like OS=Cucurbita mosch... [more]
A0A5D3CDW91.6e-5878.6730S ribosomal protein S16 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo... [more]
A0A1S3BQ701.6e-5878.6730S ribosomal protein S16 OS=Cucumis melo OX=3656 GN=LOC103492337 PE=3 SV=1[more]
BLAST of Lsi06G002920 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038880698.11.3e-6787.9230S ribosomal protein S16-2, chloroplastic/mitochondrial isoform X1 [Benincasa h... [more]
XP_022147743.14.2e-6181.8830S ribosomal protein S16-2, chloroplastic/mitochondrial [Momordica charantia][more]
XP_038880699.17.1e-6182.5530S ribosomal protein S16-2, chloroplastic/mitochondrial isoform X2 [Benincasa h... [more]
XP_023516386.18.7e-5979.8730S ribosomal protein S16-2, chloroplastic/mitochondrial-like [Cucurbita pepo su... [more]
XP_023529314.18.7e-5981.3330S ribosomal protein S16-2, chloroplastic/mitochondrial-like [Cucurbita pepo su... [more]
BLAST of Lsi06G002920 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G56940.11.7e-5269.50Ribosomal protein S16 family protein [more]
AT4G34620.11.3e-2845.45small subunit ribosomal protein 16 [more]
ATCG00050.17.0e-0642.22ribosomal protein S16 [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR023803Ribosomal protein S16 domain superfamilyGENE3D3.30.1320.10coord: 1..125
e-value: 1.1E-42
score: 146.9
IPR023803Ribosomal protein S16 domain superfamilySUPERFAMILY54565Ribosomal protein S16coord: 3..114
IPR000307Ribosomal protein S16TIGRFAMTIGR00002TIGR00002coord: 3..61
e-value: 2.7E-20
score: 70.1
IPR000307Ribosomal protein S16PFAMPF00886Ribosomal_S16coord: 9..62
e-value: 1.0E-18
score: 67.1
IPR000307Ribosomal protein S16PANTHERPTHR1291930S RIBOSOMAL PROTEIN S16coord: 80..131
coord: 1..62
IPR000307Ribosomal protein S16HAMAPMF_00385Ribosomal_S16coord: 2..100
score: 20.456745
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 107..149
NoneNo IPR availablePANTHERPTHR12919:SF3030S RIBOSOMAL PROTEIN S16-LIKEcoord: 80..131
coord: 1..62

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi06G002920.1Lsi06G002920.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000724 double-strand break repair via homologous recombination
biological_process GO:0006334 nucleosome assembly
biological_process GO:0006412 translation
cellular_component GO:0009507 chloroplast
cellular_component GO:0005634 nucleus
cellular_component GO:0015935 small ribosomal subunit
cellular_component GO:0005840 ribosome
molecular_function GO:0005524 ATP binding
molecular_function GO:0008094 ATP-dependent activity, acting on DNA
molecular_function GO:0003697 single-stranded DNA binding
molecular_function GO:0003735 structural constituent of ribosome