Lsi06G002360 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi06G002360
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	AP complex subunit sigma
Location	chr06: 2723998 .. 2726685 (+)
RNA-Seq Expression	Lsi06G002360
Synteny	Lsi06G002360

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCGAGGACTAAAGTGTTCATTTTGAAACTTCAAGGACCAAATAGACATCAAGTTCAAACCTCGGGGACTAAAAGTGCATTTTGCCCTAATAATAATAATAGAAAATTAATTAAATAAACAAATCCGGAGATGTCTACCTCTTGGTCTTGGCGATCGATTTAGGCTTTTTCTGGCGGGTGTGAGCTTCGTGGAGTTTGTGAAGAGCAGAATGGGGATCAGATTCATTCTGATGGTGAACAAGCAAGGACAAACGCGCCTTGCTCAGTATTATGAAAATCTTACTCTCGAAGAACGTCGAGCTCTTGAGGGTGAAATCGTTCGCAAATGCCTCGCTCGTAACGAACAACAGGTAACTTTGGATTCTTTTATATAGATCTCAATCCACTACCTCTTAATTTCTCTTTCATATCATTTCAATCCTTGAATTATTTTTGAATTTCTGTTGATCTGTAAATTAAATGCAAATTAGGGAAAATTACGCTGCACTTGGCCCTAGGTACGGTTAATAGTGCAAACAAATTTCACATTAGAAAGAAGTAATCATGAGTGTATAAATGAGAACAATTATCTTCATTGCTATGAAACCTTTTGGATGGTACAGAGGATTTATATCCAATGTGGACAATAGGAGATTGGTGGAGGATTTGTTATCCTTATTGATTGGTATTAGAGCCATGGTCTAAACCTAGCTGTGTGGATGAGATTCTCATTGATTTTGAATAAAAGTAGGGAATCTTGTGGATGAATTCCCAGATTGGACAAGAAGTGCTTGGAGCAGCAAGCAAGTAATAGCTCCATCAAGCTCACTTTGGTAGAAGAGTAGATCTTCTTTCGAGGGGAGGAGATTAAGGGTGTGATAGGTGGTTGACACCACAAAAATGGTTCATAGTTGTGTTCTATTTGGCTTTACAATTGGGCATTGATAAAGGCAAGTTCTCGGAGGCAAAAGGAGTGGGCGAATGAGGGAAGACTCAAGGTGATACTCTCTTCGAAGGGAGGATTGTTAGGAGTGCAAAAAAAGTCTCACATTGGTTAGGGAAAGAAGTGATCATGGGTATATAAGTGAGGACAATTATCTCCATTGATATGAAGTTTTTTGAGTGGTACTGAGGATTTATGCCCAAAGTGGTCAATATCATACTATTGTGGAGATAGAGGTCATGTTGTCTTTATCAATTGGTATTAGATTCATGGTCTAAACCTAGTTGCATGAGTGAGATCCTCAGCAATCTCAGATAAAAGTAGTCAGTTTTGTAGATGAATCCCCAAATCGGGCAAAAAGTGCTTGGAGTGTTGCAAGTCATAACTCTATCAAGCTCACTGGTAAAGGAGTGGATCTTTGTTCAAGGGGAGGAGATTAAGGGTGCGATAACTGGTCGACACCAAGTGTATTCCACAAAAATGATTCTTGGTTGTGCTTTATCAGAATTTGCAACTGGGCCTTAATAACAACAAGCTCTCGTAGGCAACTGGGAGTGGACGAATGAGGGAAGACTCAAGGTGGTACTTTGTTCGAGGGGAGGCTTGTTAGGAATGCAAGCAAAGTCCTACATTGGTTAGGGAAGGGAGTGATAATGGGTATATAAGTGAGGACAATTATCTCCATTGGTATTAAAGCCTTTTGGGTGGTACCAAAAATGAGCCATGAGGGTTTATGCCCAAAGTAGACAATATCATACTATTGTAGAGATAGGTGGAGGTTTTGTTGTCTTTGTCAGGTACAACACGTTGCCTTTATTGTTCGAAAAAATTCTCATTCATTGTGGTGTGCTAAGTTATAACACAAATTGGAAATGCGCGCTAGAACTGGTCAGTAGTTGTCTCTGGATTGCTGATCTAAATGATATTGCATTTAAGTCTTGAAGCGATACGTAGCATTTGAAACCATTTAGTTCGCATCCCATTGCGTAGTGTTTTATTGGATCAATCATCTTCTATTTCAACATCTGATATTGGTTAGTTTCCACTTACAGCATTTGTCCATTTTTTCGTACGTTAGTGTTGTTACTCAAGTCTGCGGTATGATTTTCAGTTACTCAGATGAATAATAGGGAGTTTCATAAGCTATTTCTTTCCCTGGAATAAATTCATAATAGGAAGTAATGTCAAAGAAAGAAATCAATAAAATAACTAAATATGGTGTGCGGCCAGGTTTGCCTGGAACCATGACAAGCAATGGGCAAGCCGATTCTTACGGCGCCTAGTTATTAATCGGTAATCTAGTCTGCTCTCTATCTGCAAGGGGTATGCAACTGCACTTTCCCTGCTTTGGTTGAAAAGATTAATCTTGCACAACAGTTAGGAAGCTACCATATGAATATTAGTGATGTCCATCTATTTTCTTGGAATCCTAACATATGTTCTGTTTTTCATCCTCTCCGAGGAACCAATTTAGTTGCAATTGCAGGTTCTTGATTGCATCTACAGCATCTATGCTCATTTATCTTCACTTATAATATTTTCTTTGTGAACAGTGTTCCTTTGTCGAGCATCGCAACTATAAGATTGTATATAGGCGATATGCATCTCTGTTTTTTCTAGTTGGAGTTGACAATGATGAAGTAAGTTAATTTGTCCTTCCTCTACTGTTGATAATTAATTTATGCACTGATTGTTTCCTTTTGTTTGACTATGATCAGTATACCGTCATAGAAGTTGATATGCCTCGTAACCAGAAGAGTTTGTAG

mRNA sequence

CTCGAGGACTAAAGTGTTCATTTTGAAACTTCAAGGACCAAATAGACATCAAGTTCAAACCTCGGGGACTAAAAGTGCATTTTGCCCTAATAATAATAATAGAAAATTAATTAAATAAACAAATCCGGAGATGTCTACCTCTTGGTCTTGGCGATCGATTTAGGCTTTTTCTGGCGGGTGTGAGCTTCGTGGAGTTTGTGAAGAGCAGAATGGGGATCAGATTCATTCTGATGGTGAACAAGCAAGGACAAACGCGCCTTGCTCAGTATTATGAAAATCTTACTCTCGAAGAACGTCGAGCTCTTGAGGGTGAAATCGTTCGCAAATGCCTCGCTCGTAACGAACAACAGTGTTCCTTTGTCGAGCATCGCAACTATAAGATTGTATATAGGCGATATGCATCTCTGTTTTTTCTAGTTGGAGTTGACAATGATGAATATACCGTCATAGAAGTTGATATGCCTCGTAACCAGAAGAGTTTGTAG

Coding sequence (CDS)

ATGGGGATCAGATTCATTCTGATGGTGAACAAGCAAGGACAAACGCGCCTTGCTCAGTATTATGAAAATCTTACTCTCGAAGAACGTCGAGCTCTTGAGGGTGAAATCGTTCGCAAATGCCTCGCTCGTAACGAACAACAGTGTTCCTTTGTCGAGCATCGCAACTATAAGATTGTATATAGGCGATATGCATCTCTGTTTTTTCTAGTTGGAGTTGACAATGATGAATATACCGTCATAGAAGTTGATATGCCTCGTAACCAGAAGAGTTTGTAG

Protein sequence

MGIRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVYRRYASLFFLVGVDNDEYTVIEVDMPRNQKSL

Homology

[Close]

BLAST of Lsi06G002360 vs. ExPASy Swiss-Prot
Match: O82201 (AP-4 complex subunit sigma OS=Arabidopsis thaliana OX=3702 GN=At2g19790 PE=1 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 1.2e-34
Identity = 72/76 (94.74%), Postives = 75/76 (98.68%), Query Frame = 0


Query: 1  MGIRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVY 60
          MGIRFILMVNKQGQTRLAQYYE LTLEERRALEGEIVRKCLARN+QQCSFVEHRNYKIVY
Sbjct: 1  MGIRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARNDQQCSFVEHRNYKIVY 60

Query: 61 RRYASLFFLVGVDNDE 77
          RRYASLFF+VGVD+DE
Sbjct: 61 RRYASLFFMVGVDDDE 76

[Close]

BLAST of Lsi06G002360 vs. ExPASy Swiss-Prot
Match: Q54NZ4 (AP-4 complex subunit sigma OS=Dictyostelium discoideum OX=44689 GN=ap4s1 PE=3 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 8.3e-23
Identity = 47/87 (54.02%), Postives = 70/87 (80.46%), Query Frame = 0


Query: 1  MGIRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVY 60
          M I++ L+VN +G+TRL+QYYE++  EER A+E EI+RKCL+R E QCSFVE+++YK++Y
Sbjct: 1  MAIKYFLLVNIRGKTRLSQYYESIPFEERPAMESEIIRKCLSRTEIQCSFVEYKDYKVIY 60

Query: 61 RRYASLFFLVGVDNDEYTVIEVDMPRN 88
          R+YA+LFF+VGVD  E  +  +++  N
Sbjct: 61 RKYATLFFIVGVDTTENELAILELIHN 87

[Close]

BLAST of Lsi06G002360 vs. ExPASy Swiss-Prot
Match: Q3ZBB6 (AP-4 complex subunit sigma-1 OS=Bos taurus OX=9913 GN=AP4S1 PE=2 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.5e-19
Identity = 39/74 (52.70%), Postives = 64/74 (86.49%), Query Frame = 0


Query: 3  IRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVYRR 62
          I+F LMVNKQGQTRL++YYE++ + +R  LE E+++ CL+R+ +QCSF+E++++K++YR+
Sbjct: 2  IKFFLMVNKQGQTRLSKYYEHVEINKRTLLETEVIKSCLSRSNEQCSFIEYKDFKLIYRQ 61

Query: 63 YASLFFLVGVDNDE 77
          YA+LF +VGV++ E
Sbjct: 62 YAALFIVVGVNDTE 75

[Close]

BLAST of Lsi06G002360 vs. ExPASy Swiss-Prot
Match: Q9Y587 (AP-4 complex subunit sigma-1 OS=Homo sapiens OX=9606 GN=AP4S1 PE=1 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.5e-19
Identity = 39/74 (52.70%), Postives = 64/74 (86.49%), Query Frame = 0


Query: 3  IRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVYRR 62
          I+F LMVNKQGQTRL++YYE++ + +R  LE E+++ CL+R+ +QCSF+E++++K++YR+
Sbjct: 2  IKFFLMVNKQGQTRLSKYYEHVDINKRTLLETEVIKSCLSRSNEQCSFIEYKDFKLIYRQ 61

Query: 63 YASLFFLVGVDNDE 77
          YA+LF +VGV++ E
Sbjct: 62 YAALFIVVGVNDTE 75

[Close]

BLAST of Lsi06G002360 vs. ExPASy Swiss-Prot
Match: Q9WVL1 (AP-4 complex subunit sigma-1 OS=Mus musculus OX=10090 GN=Ap4s1 PE=2 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 7.3e-19
Identity = 39/74 (52.70%), Postives = 63/74 (85.14%), Query Frame = 0


Query: 3  IRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVYRR 62
          I+F LMVNKQGQTRL++YYE++ + +R  LE E+ + CL+R+ +QCSF+E++++K++YR+
Sbjct: 2  IKFFLMVNKQGQTRLSKYYEHVDINKRALLETEVSKSCLSRSSEQCSFIEYKDFKLIYRQ 61

Query: 63 YASLFFLVGVDNDE 77
          YA+LF +VGV++ E
Sbjct: 62 YAALFVVVGVNDTE 75

[Close]

BLAST of Lsi06G002360 vs. ExPASy TrEMBL
Match: A0A6J1JK41 (AP complex subunit sigma OS=Cucurbita maxima OX=3661 GN=LOC111485299 PE=3 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 2.2e-34
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 0


Query: 1  MGIRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVY 60
          MGIRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVY
Sbjct: 1  MGIRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVY 60

Query: 61 RRYASLFFLVGVDNDE 77
          RRYASLFFLVGVDNDE
Sbjct: 61 RRYASLFFLVGVDNDE 76

[Close]

BLAST of Lsi06G002360 vs. ExPASy TrEMBL
Match: A0A5D3CFV6 (AP complex subunit sigma OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G002750 PE=3 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 2.2e-34
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 0


Query: 1  MGIRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVY 60
          MGIRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVY
Sbjct: 1  MGIRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVY 60

Query: 61 RRYASLFFLVGVDNDE 77
          RRYASLFFLVGVDNDE
Sbjct: 61 RRYASLFFLVGVDNDE 76

[Close]

BLAST of Lsi06G002360 vs. ExPASy TrEMBL
Match: A0A0A0M1T6 (AP complex subunit sigma OS=Cucumis sativus OX=3659 GN=Csa_1G575120 PE=3 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 2.2e-34
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 0


Query: 1  MGIRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVY 60
          MGIRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVY
Sbjct: 1  MGIRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVY 60

Query: 61 RRYASLFFLVGVDNDE 77
          RRYASLFFLVGVDNDE
Sbjct: 61 RRYASLFFLVGVDNDE 76

[Close]

BLAST of Lsi06G002360 vs. ExPASy TrEMBL
Match: A0A6J1HBI1 (AP complex subunit sigma OS=Cucurbita moschata OX=3662 GN=LOC111461350 PE=3 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 2.2e-34
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 0


Query: 1  MGIRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVY 60
          MGIRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVY
Sbjct: 1  MGIRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVY 60

Query: 61 RRYASLFFLVGVDNDE 77
          RRYASLFFLVGVDNDE
Sbjct: 61 RRYASLFFLVGVDNDE 76

[Close]

BLAST of Lsi06G002360 vs. ExPASy TrEMBL
Match: A0A1S3BQ09 (AP complex subunit sigma OS=Cucumis melo OX=3656 GN=LOC103492280 PE=3 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 2.2e-34
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 0


Query: 1  MGIRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVY 60
          MGIRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVY
Sbjct: 1  MGIRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVY 60

Query: 61 RRYASLFFLVGVDNDE 77
          RRYASLFFLVGVDNDE
Sbjct: 61 RRYASLFFLVGVDNDE 76

[Close]

BLAST of Lsi06G002360 vs. NCBI nr
Match: KAF9615763.1 (hypothetical protein IFM89_026229 [Coptis chinensis])

HSP 1 Score: 155.2 bits (391), Expect = 2.7e-34
Identity = 75/82 (91.46%), Postives = 80/82 (97.56%), Query Frame = 0


Query: 1  MGIRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVY 60
          MGIRFIL+VNKQGQTRLAQYYE LT+EERRALEGEIVRKCLARNEQQCSFVEHRNYKIVY
Sbjct: 1  MGIRFILLVNKQGQTRLAQYYEYLTIEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVY 60

Query: 61 RRYASLFFLVGVDNDEYTVIEV 83
          RRYASLFFLVGVDNDEY+ +E+
Sbjct: 61 RRYASLFFLVGVDNDEYSKVEL 82

[Close]

BLAST of Lsi06G002360 vs. NCBI nr
Match: XP_004135683.1 (AP-4 complex subunit sigma [Cucumis sativus] >XP_008450804.1 PREDICTED: AP-4 complex subunit sigma [Cucumis melo] >XP_022960614.1 AP-4 complex subunit sigma [Cucurbita moschata] >XP_022987894.1 AP-4 complex subunit sigma [Cucurbita maxima] >XP_023515579.1 AP-4 complex subunit sigma [Cucurbita pepo subsp. pepo] >XP_038878646.1 AP-4 complex subunit sigma [Benincasa hispida] >TYK10132.1 AP-4 complex subunit sigma [Cucumis melo var. makuwa] >KGN66196.1 hypothetical protein Csa_007414 [Cucumis sativus])

HSP 1 Score: 154.5 bits (389), Expect = 4.5e-34
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 0


Query: 1  MGIRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVY 60
          MGIRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVY
Sbjct: 1  MGIRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVY 60

Query: 61 RRYASLFFLVGVDNDE 77
          RRYASLFFLVGVDNDE
Sbjct: 61 RRYASLFFLVGVDNDE 76

[Close]

BLAST of Lsi06G002360 vs. NCBI nr
Match: MBA0633098.1 (hypothetical protein [Gossypium davidsonii])

HSP 1 Score: 152.5 bits (384), Expect = 1.7e-33
Identity = 76/84 (90.48%), Postives = 79/84 (94.05%), Query Frame = 0


Query: 1  MGIRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVY 60
          MGIRFILMVNKQGQTRLAQYYE LTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVY
Sbjct: 1  MGIRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVY 60

Query: 61 RRYASLFFLVGVDNDEYTVIEVDM 85
          RRYASLFFLVGVDNDE   + V++
Sbjct: 61 RRYASLFFLVGVDNDEVDALMVEI 84

[Close]

BLAST of Lsi06G002360 vs. NCBI nr
Match: XP_012463777.1 (PREDICTED: AP-4 complex subunit sigma isoform X2 [Gossypium raimondii] >XP_016719416.1 AP-4 complex subunit sigma isoform X2 [Gossypium hirsutum] >KAG4113077.1 hypothetical protein ERO13_D13G200300v2 [Gossypium hirsutum] >KJB83092.1 hypothetical protein B456_013G229100 [Gossypium raimondii])

HSP 1 Score: 152.5 bits (384), Expect = 1.7e-33
Identity = 76/84 (90.48%), Postives = 79/84 (94.05%), Query Frame = 0


Query: 1  MGIRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVY 60
          MGIRFILMVNKQGQTRLAQYYE LTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVY
Sbjct: 1  MGIRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVY 60

Query: 61 RRYASLFFLVGVDNDEYTVIEVDM 85
          RRYASLFFLVGVDNDE   + V++
Sbjct: 61 RRYASLFFLVGVDNDEVDALMVEI 84

[Close]

BLAST of Lsi06G002360 vs. NCBI nr
Match: KAA3486115.1 (AP-4 complex subunit sigma isoform X2 [Gossypium australe])

HSP 1 Score: 152.5 bits (384), Expect = 1.7e-33
Identity = 76/84 (90.48%), Postives = 79/84 (94.05%), Query Frame = 0


Query: 1  MGIRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVY 60
          MGIRFILMVNKQGQTRLAQYYE LTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVY
Sbjct: 1  MGIRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVY 60

Query: 61 RRYASLFFLVGVDNDEYTVIEVDM 85
          RRYASLFFLVGVDNDE   + V++
Sbjct: 61 RRYASLFFLVGVDNDEVDALMVEI 84

[Close]

BLAST of Lsi06G002360 vs. TAIR 10
Match: AT2G19790.1 (SNARE-like superfamily protein )

HSP 1 Score: 146.7 bits (369), Expect = 8.8e-36
Identity = 72/76 (94.74%), Postives = 75/76 (98.68%), Query Frame = 0


Query: 1  MGIRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVY 60
          MGIRFILMVNKQGQTRLAQYYE LTLEERRALEGEIVRKCLARN+QQCSFVEHRNYKIVY
Sbjct: 1  MGIRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARNDQQCSFVEHRNYKIVY 60

Query: 61 RRYASLFFLVGVDNDE 77
          RRYASLFF+VGVD+DE
Sbjct: 61 RRYASLFFMVGVDDDE 76

[Close]

BLAST of Lsi06G002360 vs. TAIR 10
Match: AT1G47830.1 (SNARE-like superfamily protein )

HSP 1 Score: 70.9 bits (172), Expect = 6.1e-13
Identity = 36/71 (50.70%), Postives = 50/71 (70.42%), Query Frame = 0


Query: 3  IRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVYRR 62
          IRFIL+ N+QG+TRLA+YY  L   E+  +E E+ R  + R+ +  +FVE R +K++YRR
Sbjct: 2  IRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDAKFTNFVEFRTHKVIYRR 61

Query: 63 YASLFFLVGVD 74
          YA LFF V VD
Sbjct: 62 YAGLFFSVCVD 72

[Close]

BLAST of Lsi06G002360 vs. TAIR 10
Match: AT2G17380.1 (associated protein 19 )

HSP 1 Score: 67.8 bits (164), Expect = 5.2e-12
Identity = 33/82 (40.24%), Postives = 55/82 (67.07%), Query Frame = 0


Query: 3  IRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVYRR 62
          I F+L+V++QG+ RL ++Y   T +ER  +  E+    L R  + C+F+E R YK+VY+R
Sbjct: 2  IHFVLLVSRQGKVRLTKWYSPYTQKERSKVIRELSGVILNRGPKLCNFIEWRGYKVVYKR 61

Query: 63 YASLFFLVGVD--NDEYTVIEV 83
          YASL+F + +D  ++E  V+E+
Sbjct: 62 YASLYFCMCIDEADNELEVLEI 83

[Close]

BLAST of Lsi06G002360 vs. TAIR 10
Match: AT4G35410.2 (Clathrin adaptor complex small chain family protein )

HSP 1 Score: 66.2 bits (160), Expect = 1.5e-11
Identity = 33/82 (40.24%), Postives = 54/82 (65.85%), Query Frame = 0


Query: 3  IRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVYRR 62
          I F+L+V++QG+ RL ++Y     +ER  +  E+    L R  + C+FVE R YK+VY+R
Sbjct: 2  IHFVLLVSRQGKVRLTKWYSPYAQKERSKVIRELSGVILNRGPKLCNFVEWRGYKVVYKR 61

Query: 63 YASLFFLVGVD--NDEYTVIEV 83
          YASL+F + +D  ++E  V+E+
Sbjct: 62 YASLYFCMCIDQEDNELEVLEI 83

[Close]

BLAST of Lsi06G002360 vs. TAIR 10
Match: AT4G35410.1 (Clathrin adaptor complex small chain family protein )

HSP 1 Score: 66.2 bits (160), Expect = 1.5e-11
Identity = 33/82 (40.24%), Postives = 54/82 (65.85%), Query Frame = 0


Query: 3  IRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVYRR 62
          I F+L+V++QG+ RL ++Y     +ER  +  E+    L R  + C+FVE R YK+VY+R
Sbjct: 2  IHFVLLVSRQGKVRLTKWYSPYAQKERSKVIRELSGVILNRGPKLCNFVEWRGYKVVYKR 61

Query: 63 YASLFFLVGVD--NDEYTVIEV 83
          YASL+F + +D  ++E  V+E+
Sbjct: 62 YASLYFCMCIDQEDNELEVLEI 83

The following BLAST results are available for this feature:

BLAST of Lsi06G002360 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O82201	1.2e-34	94.74	AP-4 complex subunit sigma OS=Arabidopsis thaliana OX=3702 GN=At2g19790 PE=1 SV=...	[more]
Q54NZ4	8.3e-23	54.02	AP-4 complex subunit sigma OS=Dictyostelium discoideum OX=44689 GN=ap4s1 PE=3 SV...	[more]
Q3ZBB6	1.5e-19	52.70	AP-4 complex subunit sigma-1 OS=Bos taurus OX=9913 GN=AP4S1 PE=2 SV=1	[more]
Q9Y587	1.5e-19	52.70	AP-4 complex subunit sigma-1 OS=Homo sapiens OX=9606 GN=AP4S1 PE=1 SV=1	[more]
Q9WVL1	7.3e-19	52.70	AP-4 complex subunit sigma-1 OS=Mus musculus OX=10090 GN=Ap4s1 PE=2 SV=1	[more]

BLAST of Lsi06G002360 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JK41	2.2e-34	100.00	AP complex subunit sigma OS=Cucurbita maxima OX=3661 GN=LOC111485299 PE=3 SV=1	[more]
A0A5D3CFV6	2.2e-34	100.00	AP complex subunit sigma OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A0A0M1T6	2.2e-34	100.00	AP complex subunit sigma OS=Cucumis sativus OX=3659 GN=Csa_1G575120 PE=3 SV=1	[more]
A0A6J1HBI1	2.2e-34	100.00	AP complex subunit sigma OS=Cucurbita moschata OX=3662 GN=LOC111461350 PE=3 SV=1	[more]
A0A1S3BQ09	2.2e-34	100.00	AP complex subunit sigma OS=Cucumis melo OX=3656 GN=LOC103492280 PE=3 SV=1	[more]

BLAST of Lsi06G002360 vs. NCBI nr


Match Name	E-value	Identity	Description
KAF9615763.1	2.7e-34	91.46	hypothetical protein IFM89_026229 [Coptis chinensis]	[more]
XP_004135683.1	4.5e-34	100.00	AP-4 complex subunit sigma [Cucumis sativus] >XP_008450804.1 PREDICTED: AP-4 com...	[more]
MBA0633098.1	1.7e-33	90.48	hypothetical protein [Gossypium davidsonii]	[more]
XP_012463777.1	1.7e-33	90.48	PREDICTED: AP-4 complex subunit sigma isoform X2 [Gossypium raimondii] >XP_01671...	[more]
KAA3486115.1	1.7e-33	90.48	AP-4 complex subunit sigma isoform X2 [Gossypium australe]	[more]

BLAST of Lsi06G002360 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G19790.1	8.8e-36	94.74	SNARE-like superfamily protein	[more]
AT1G47830.1	6.1e-13	50.70	SNARE-like superfamily protein	[more]
AT2G17380.1	5.2e-12	40.24	associated protein 19	[more]
AT4G35410.2	1.5e-11	40.24	Clathrin adaptor complex small chain family protein	[more]
AT4G35410.1	1.5e-11	40.24	Clathrin adaptor complex small chain family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022775	AP complex, mu/sigma subunit	PFAM	PF01217	Clat_adaptor_s	coord: 3..80 e-value: 2.1E-20 score: 73.1
None	No IPR available	GENE3D	3.30.450.60		coord: 2..84 e-value: 5.5E-30 score: 106.2
None	No IPR available	PANTHER	PTHR11753:SF50	AP COMPLEX SUBUNIT SIGMA	coord: 1..78
IPR016635	Adaptor protein complex, sigma subunit	PANTHER	PTHR11753	ADAPTOR COMPLEXES SMALL SUBUNIT FAMILY	coord: 1..78
IPR011012	Longin-like domain superfamily	SUPERFAMILY	64356	SNARE-like	coord: 3..79

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi06G002360.1	Lsi06G002360.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006886	intracellular protein transport
biological_process	GO:0016192	vesicle-mediated transport
biological_process	GO:0015031	protein transport
cellular_component	GO:0043231	intracellular membrane-bounded organelle
cellular_component	GO:0016020	membrane