Lsi06G001560 (gene) Bottle gourd (USVL1VR-Ls) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TGGCGATGTTCAAAATCCAAATCTTTGCACGTCATCTTTGACATCTGCAATCTTCATCGTCGCTTCAGCGTACAGAATACATTCTTTCACACTTCAATTTCTCAATTCTCACACAACCCAAATTCCCAAATTCCCATTTTGCATTTCTCAATTCAGAATTTGAATCGTTTCTGAAGAACCAAAACCCAACAAATTTGGATCCCAATCCGGAAACCGATGCGACCCAACAACGAAACCCAGCAGAATCACAGCCATCGGAAGCCAATCTCCATCCTCCCGAAGCGCATAATCTTGGTCCGCCACGGTGAATCTCAGGGCAATCTAAACTCTGCAACCTACACCACAACCCCCGATAACAAAGTCCCATTAACAGAAGAGGGTTTGATTCAGGCTCGAATCGCCGGTACCGAGCTCCACAGACTGTTGTCCAATGACGGAACCAACCCTCATTGGCGAGTCTACTTCTATGTTTCGCCCTATGAGCGCACCCGATCCACACTCCGTGAGATCGGCCGCGCGTTTTCGAAGAAGAGGATTATTGGCGTCAGAGAGGAGTGTAGAATCAGAGAGCAGGATTTTGGGAATTTTCAAGTGGAGGAGAGGATGAAAGTTGTGAAGGAAACGAGGGAGAGATTTGGGAGATTCTTCTACCGCTTTCCTGAAGGAGAGTCCGCTGCTGATGTCTACGATCGCGTTTCCAGTGAGTTCTCTGTTTTTCTTTGCTTTTCATTCTGCGTTTCTGATTTGCAATGGAGGACTTGGGTTTGATTCTTATGGATTGCTAGTTGAGGATTAAGCTCTGTTTGTTGGTTTCTGATATCTCTGGTGTAGGGAATTTTGTCAATTAGGATGTCTTTTAGGTTGTATTATGTTTATTTGACATTGCATTCTTATATAGTTATATGCCATGTTTAAGAAATGGTCTAATGTATTAAGCTCGGGTTGAAGCTGACCTGTGTTTGTTATGTGAGTTAGCTTATTTTGGACTACAGTTTTGTTAATCCCATTATCTGTAAATTCTTGATGGCTTTTGGTTTTGGAGTGAGAAGAGTCAAATTATTAGCCCTCTAACATATGTATTGCATATTATTTCTCTCTGTGAAAAGTCGACTAAAAAATAATACAATTATTCTACCCTATATAATATTAGAGGGTCCAAACTGACTTTTATAGATGTGTTGAAAGATAAACCGAAATTATATAAATCCTGGCTTATAGAACTCTCTTTTTATGTTTTATGCTAATCTCTAACCATCATAAAAACCATATTTTGTGCCTAAATGGTATAAACTTTAACTTTCCAGCTCCAGACTTCATAAAATTTGATTTAAAATCGTGAGCCAGACATTTCACAAAATCTCATATGTGGGAGCATTTTCTCTTTACTGGGATTTTGATGATATTGATGAAACTTTCCAGTTTCAGGAGTATGATAGTTTTGGGTCATGTCATGTGTAGATGTGTAATTTCCTGATTATCAGGTTGATATTGTGTTAGTAAAGATAGATTCTGGAATTGCTGAAAATGAATAGTGAAGAGAGAAGATTACTGGTAGGCAAAGGGGATTATTAGGTTTTTTGTCCCTACTGTTTTATCTTGGATTTTGTTGCCATTTGAAGAAAAAGGTGTGGGACACTAGCTTTTTGTTTGTTTTCAACATTTTTCATATATTTTATCTCTAAAGACAATTACAATTAGTTATAAAGAAATATATCAAGACAAGAAGATGGAGGCTGAGGGCATATGGCATTAGAGAATATAATATATATTAGGTTTCTTCGATATTGGAGAATTGGGATTCTCTACTATTGAAGCTGAAAGCTTTTCTTTCAAATGGACCATCGAAGGTTCATTTTAATAACTTCATATTATACTAGAAAAGTAGATACAGTAGCAGCCGAAAGAATAAACAAATGAAAGTTGCTTTGCGTTCGAAAGAGAAAGCATTACTAAAAGTGGCCAATCATAATGTGGTTGACGCTTTTATAATTGTTAACTGCCATGTTTTAATTTCTCTAATTAAAATGGTATATGACTGAATACCATTTAATAGTTTAGAAGTCTTCTTTATGATTAAGGGATCGAGATGCAATAACTTCTTATAATGTAACTAAATCGATGTTGCTTGTCAACGTCTTAAACCTCGTTTGTTTCTGTAGCTTGTTTAGGCTCAAGAAGTGTTGAACTGTTTATGTACATGAGATGAATGGTGGCATACTGAAATAACTATTTTGAGAAACATATTGGTTTTTTCAGGCTTTCTTGAGTCCTTATGGAGGGACATAGACATGAACAGGCTCCGCCACAACCCTTCCCAAGATCTCAACCTTATAATCATATCTCATGGACTAACATCTCGTGTCTTCCTCACAAAATGGTTCAAGTGGACAGTCGAGCAATTTGAGTACCTAAACAATCCCGAAAACTGCGAATACCGGGTGATGCAGTTGGGAGAAGGTGGTGAATACAGCTTAGCCATTAATCACACAGAGGAAGAAATGCTGGAATGGGGGCTTTCTCGTGAGATGATATCTGATCAGAAATGGAGAGCAAGTGCCCACAAAGGTCAATGGAATGAAAGATGTCCCTGGTATCTTGAAGCTTTCTTTGATAATCTAGCTGACTCGGACGGCGAAGATAGTTGTGATGAACCATGTCAGGATCATGACGAACTAGTTGAATCTTGTTCAAGTGTGGCGCTCACAGAGGAATGACAATTACACTTTACATTCTTTGAATTTGATGGGTTGATTGTTCTCTCTGCTTATAGTGTTCTTGATTTTGCACAGTATTATTTGGGGTTTTCAGGAAAATATTCATTCTTTCCTAATTTGTTTAAGATACAGGGAGGGATCTGATCTGATGGATTGAAAGTGCGACACACGATCGGGATCGGGGACCGCCTTAAAAGAAACTAGTGAAGGTGATCAGCGTAATTATAGCTCATGGTTTTCTAATTGAAATATGCATTATGAGGCTCATTTAATTTCTAAAACATAGAGCCATTGTGCACTTTTATATTCAAATTTAGATGCTAATGTGAGTCTAATTCACCGGTAATTGACATGACCTTCCTTCCTAGAGATTGAAGCTTCGGTCCCTCATCCCT TGGCGATGTTCAAAATCCAAATCTTTGCACGTCATCTTTGACATCTGCAATCTTCATCGTCGCTTCAGCGTACAGAATACATTCTTTCACACTTCAATTTCTCAATTCTCACACAACCCAAATTCCCAAATTCCCATTTTGCATTTCTCAATTCAGAATTTGAATCGTTTCTGAAGAACCAAAACCCAACAAATTTGGATCCCAATCCGGAAACCGATGCGACCCAACAACGAAACCCAGCAGAATCACAGCCATCGGAAGCCAATCTCCATCCTCCCGAAGCGCATAATCTTGGTCCGCCACGGTGAATCTCAGGGCAATCTAAACTCTGCAACCTACACCACAACCCCCGATAACAAAGTCCCATTAACAGAAGAGGGTTTGATTCAGGCTCGAATCGCCGGTACCGAGCTCCACAGACTGTTGTCCAATGACGGAACCAACCCTCATTGGCGAGTCTACTTCTATGTTTCGCCCTATGAGCGCACCCGATCCACACTCCGTGAGATCGGCCGCGCGTTTTCGAAGAAGAGGATTATTGGCGTCAGAGAGGAGTGTAGAATCAGAGAGCAGGATTTTGGGAATTTTCAAGTGGAGGAGAGGATGAAAGTTGTGAAGGAAACGAGGGAGAGATTTGGGAGATTCTTCTACCGCTTTCCTGAAGGAGAGTCCGCTGCTGATGTCTACGATCGCGTTTCCAGCTTTCTTGAGTCCTTATGGAGGGACATAGACATGAACAGGCTCCGCCACAACCCTTCCCAAGATCTCAACCTTATAATCATATCTCATGGACTAACATCTCGTGTCTTCCTCACAAAATGGTTCAAGTGGACAGTCGAGCAATTTGAGTACCTAAACAATCCCGAAAACTGCGAATACCGGGTGATGCAGTTGGGAGAAGGTGGTGAATACAGCTTAGCCATTAATCACACAGAGGAAGAAATGCTGGAATGGGGGCTTTCTCGTGAGATGATATCTGATCAGAAATGGAGAGCAAGTGCCCACAAAGGTCAATGGAATGAAAGATGTCCCTGGTATCTTGAAGCTTTCTTTGATAATCTAGCTGACTCGGACGGCGAAGATAGTTGTGATGAACCATGTCAGGATCATGACGAACTAGTTGAATCTTGTTCAAGTGTGGCGCTCACAGAGGAATGACAATTACACTTTACATTCTTTGAATTTGATGGGTTGATTGTTCTCTCTGCTTATAGTGTTCTTGATTTTGCACAGTATTATTTGGGGTTTTCAGGAAAATATTCATTCTTTCCTAATTTGTTTAAGATACAGGGAGGGATCTGATCTGATGGATTGAAAGTGCGACACACGATCGGGATCGGGGACCGCCTTAAAAGAAACTAGTGAAGGTGATCAGCGTAATTATAGCTCATGGTTTTCTAATTGAAATATGCATTATGAGGCTCATTTAATTTCTAAAACATAGAGCCATTGTGCACTTTTATATTCAAATTTAGATGCTAATGTGAGTCTAATTCACCGGTAATTGACATGACCTTCCTTCCTAGAGATTGAAGCTTCGGTCCCTCATCCCT ATGCGACCCAACAACGAAACCCAGCAGAATCACAGCCATCGGAAGCCAATCTCCATCCTCCCGAAGCGCATAATCTTGGTCCGCCACGGTGAATCTCAGGGCAATCTAAACTCTGCAACCTACACCACAACCCCCGATAACAAAGTCCCATTAACAGAAGAGGGTTTGATTCAGGCTCGAATCGCCGGTACCGAGCTCCACAGACTGTTGTCCAATGACGGAACCAACCCTCATTGGCGAGTCTACTTCTATGTTTCGCCCTATGAGCGCACCCGATCCACACTCCGTGAGATCGGCCGCGCGTTTTCGAAGAAGAGGATTATTGGCGTCAGAGAGGAGTGTAGAATCAGAGAGCAGGATTTTGGGAATTTTCAAGTGGAGGAGAGGATGAAAGTTGTGAAGGAAACGAGGGAGAGATTTGGGAGATTCTTCTACCGCTTTCCTGAAGGAGAGTCCGCTGCTGATGTCTACGATCGCGTTTCCAGCTTTCTTGAGTCCTTATGGAGGGACATAGACATGAACAGGCTCCGCCACAACCCTTCCCAAGATCTCAACCTTATAATCATATCTCATGGACTAACATCTCGTGTCTTCCTCACAAAATGGTTCAAGTGGACAGTCGAGCAATTTGAGTACCTAAACAATCCCGAAAACTGCGAATACCGGGTGATGCAGTTGGGAGAAGGTGGTGAATACAGCTTAGCCATTAATCACACAGAGGAAGAAATGCTGGAATGGGGGCTTTCTCGTGAGATGATATCTGATCAGAAATGGAGAGCAAGTGCCCACAAAGGTCAATGGAATGAAAGATGTCCCTGGTATCTTGAAGCTTTCTTTGATAATCTAGCTGACTCGGACGGCGAAGATAGTTGTGATGAACCATGTCAGGATCATGACGAACTAGTTGAATCTTGTTCAAGTGTGGCGCTCACAGAGGAATGA MRPNNETQQNHSHRKPISILPKRIILVRHGESQGNLNSATYTTTPDNKVPLTEEGLIQARIAGTELHRLLSNDGTNPHWRVYFYVSPYERTRSTLREIGRAFSKKRIIGVREECRIREQDFGNFQVEERMKVVKETRERFGRFFYRFPEGESAADVYDRVSSFLESLWRDIDMNRLRHNPSQDLNLIIISHGLTSRVFLTKWFKWTVEQFEYLNNPENCEYRVMQLGEGGEYSLAINHTEEEMLEWGLSREMISDQKWRASAHKGQWNERCPWYLEAFFDNLADSDGEDSCDEPCQDHDELVESCSSVALTEE Homology
BLAST of Lsi06G001560 vs. ExPASy Swiss-Prot
Match: Q9MAA2 (Phosphoglycerate mutase-like protein AT74 OS=Arabidopsis thaliana OX=3702 GN=At3g05170 PE=2 SV=1) HSP 1 Score: 439.5 bits (1129), Expect = 3.2e-122 Identity = 206/283 (72.79%), Postives = 246/283 (86.93%), Query Frame = 0
BLAST of Lsi06G001560 vs. ExPASy Swiss-Prot
Match: O04035 (Phosphoglycerate mutase-like protein AT74H OS=Arabidopsis thaliana OX=3702 GN=At1g08940 PE=3 SV=2) HSP 1 Score: 388.3 bits (996), Expect = 8.4e-107 Identity = 186/275 (67.64%), Postives = 226/275 (82.18%), Query Frame = 0
BLAST of Lsi06G001560 vs. ExPASy Swiss-Prot
Match: Q99288 (Broad-range acid phosphatase DET1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=DET1 PE=1 SV=1) HSP 1 Score: 145.6 bits (366), Expect = 9.5e-34 Identity = 101/303 (33.33%), Postives = 139/303 (45.87%), Query Frame = 0
BLAST of Lsi06G001560 vs. ExPASy TrEMBL
Match: A0A0A0LYJ5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G571810 PE=4 SV=1) HSP 1 Score: 609.0 bits (1569), Expect = 1.1e-170 Identity = 295/313 (94.25%), Postives = 301/313 (96.17%), Query Frame = 0
BLAST of Lsi06G001560 vs. ExPASy TrEMBL
Match: A0A1S3BP58 (phosphoglycerate mutase-like protein AT74 OS=Cucumis melo OX=3656 GN=LOC103492198 PE=4 SV=1) HSP 1 Score: 605.1 bits (1559), Expect = 1.6e-169 Identity = 294/313 (93.93%), Postives = 300/313 (95.85%), Query Frame = 0
BLAST of Lsi06G001560 vs. ExPASy TrEMBL
Match: A0A5D3CFF3 (Phosphoglycerate mutase-like protein AT74 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G003610 PE=4 SV=1) HSP 1 Score: 605.1 bits (1559), Expect = 1.6e-169 Identity = 294/313 (93.93%), Postives = 300/313 (95.85%), Query Frame = 0
BLAST of Lsi06G001560 vs. ExPASy TrEMBL
Match: A0A6J1EV53 (phosphoglycerate mutase-like protein AT74 OS=Cucurbita moschata OX=3662 GN=LOC111438034 PE=4 SV=1) HSP 1 Score: 596.7 bits (1537), Expect = 5.7e-167 Identity = 286/313 (91.37%), Postives = 299/313 (95.53%), Query Frame = 0
BLAST of Lsi06G001560 vs. ExPASy TrEMBL
Match: A0A6J1IAB4 (phosphoglycerate mutase-like protein AT74 OS=Cucurbita maxima OX=3661 GN=LOC111473124 PE=4 SV=1) HSP 1 Score: 594.0 bits (1530), Expect = 3.7e-166 Identity = 284/313 (90.73%), Postives = 299/313 (95.53%), Query Frame = 0
BLAST of Lsi06G001560 vs. NCBI nr
Match: XP_038877694.1 (phosphoglycerate mutase-like protein AT74 [Benincasa hispida] >XP_038877695.1 phosphoglycerate mutase-like protein AT74 [Benincasa hispida] >XP_038877696.1 phosphoglycerate mutase-like protein AT74 [Benincasa hispida]) HSP 1 Score: 620.5 bits (1599), Expect = 7.7e-174 Identity = 299/313 (95.53%), Postives = 307/313 (98.08%), Query Frame = 0
BLAST of Lsi06G001560 vs. NCBI nr
Match: XP_004135635.1 (phosphoglycerate mutase-like protein AT74 [Cucumis sativus] >KGN66109.1 hypothetical protein Csa_007405 [Cucumis sativus]) HSP 1 Score: 609.0 bits (1569), Expect = 2.3e-170 Identity = 295/313 (94.25%), Postives = 301/313 (96.17%), Query Frame = 0
BLAST of Lsi06G001560 vs. NCBI nr
Match: XP_008450693.1 (PREDICTED: phosphoglycerate mutase-like protein AT74 [Cucumis melo] >XP_008450694.1 PREDICTED: phosphoglycerate mutase-like protein AT74 [Cucumis melo] >XP_008450695.1 PREDICTED: phosphoglycerate mutase-like protein AT74 [Cucumis melo] >TYK10215.1 phosphoglycerate mutase-like protein AT74 [Cucumis melo var. makuwa]) HSP 1 Score: 605.1 bits (1559), Expect = 3.3e-169 Identity = 294/313 (93.93%), Postives = 300/313 (95.85%), Query Frame = 0
BLAST of Lsi06G001560 vs. NCBI nr
Match: XP_022931764.1 (phosphoglycerate mutase-like protein AT74 [Cucurbita moschata]) HSP 1 Score: 596.7 bits (1537), Expect = 1.2e-166 Identity = 286/313 (91.37%), Postives = 299/313 (95.53%), Query Frame = 0
BLAST of Lsi06G001560 vs. NCBI nr
Match: KAG6590328.1 (Phosphoglycerate mutase-like protein AT74, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 596.3 bits (1536), Expect = 1.6e-166 Identity = 285/313 (91.05%), Postives = 299/313 (95.53%), Query Frame = 0
BLAST of Lsi06G001560 vs. TAIR 10
Match: AT3G05170.1 (Phosphoglycerate mutase family protein ) HSP 1 Score: 439.5 bits (1129), Expect = 2.3e-123 Identity = 206/283 (72.79%), Postives = 246/283 (86.93%), Query Frame = 0
BLAST of Lsi06G001560 vs. TAIR 10
Match: AT1G08940.1 (Phosphoglycerate mutase family protein ) HSP 1 Score: 388.3 bits (996), Expect = 6.0e-108 Identity = 186/275 (67.64%), Postives = 226/275 (82.18%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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