Lsi06G001010 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi06G001010
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	protein RALF-like 9
Location	chr06: 1006295 .. 1011284 (-)
RNA-Seq Expression	Lsi06G001010
Synteny	Lsi06G001010

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGGGTTGGTTTCAACTTTCAATTTTGGACCTCATGATTTTGAGCTTTAGAAACTTTTGAGAATATAGAATCTATTTTCATATATTTAAATCCTAAAAAAAAATTAATTTATAAGAAAATTTTTACGCATAGAAAAAATATCGAACTATTTACAGAAAATAACAAAAAAAAATATCGATAGACATTGATAGACTTCTATTAGCATCTATTAGTGATAGACTTCTATTAGCATCTATTAGTGATAGACTTCTATCATTTCTATCACCGATAGACCCGGATAGACTTCTATCAGTGTCTATCACAACTATCTAAACATTTTGTTATTTTGTGTAAATAGTTTTCTTTATTTTTCTATTTTTAAAAAGTTTCCTAATTTATACCCTTAAACTTGAAGAGTTGTATTAATTTAAACTCTGAATTAATAATCGTATCAATTTAAACTTTGAATTTAAGTAAGTGTACCAATTTACACCATTTATTACGTTTCGTTAGTGTGGGATTCATAATTGTATTAGTTAAACCACTAAGGTTTCATAAATGAATCAATTTAGACTTTTATTCATAATTTTCTTTGAGAATCATCCATGCATTTATTCTAATCGTCAATTTTGTAAGACTGACATTTGAAGAAGTTTACACACGTTTGAGAATTAATACATAAATGATTTTCAAAAGTAATCATATTGACTTATCTAAATTGATTGGCTTGTAAAAATTTAGATTAACTCAAATTATAATTTTTACGTGACATTGGTCAAACGAAATCTAAAAGAGGTTGTAAATTGAAACACTTACGAAAATTTACGGTTTAAATTGATACAATCATTAGTTTAGTATTTTAATTGATACAAATCCCAAAGTTTAAGAGTATAAATTGACATTTATCTTAAATTCTATATTGATTCTTGTATTTATTTTATTTTATTTTATTCTAGTTCTAATTATATAAAAAAAAAAATTATATAGGGAAAAATCAAACTCTCGACTTTTGGTTAAAAAAAATATAAGTCTTAACTAATGAACAATGACCATGCTCATTTAATTCATAAATTTTGTTATTTTAAGACATGCTCGATCTTTTTCTCTTCTATTACACTTCTCTAGTGTGATTTTAATTTAACATTTTCTCAAAATTTAGTCTAATTAAAATTTTAAATATTAACTTTCAACTTCTGATGTCTCTTTTCAAAAAAAAATTTATAACATTTTTATATAAATTTTCTTTTGTTTTATCTATATTTCTATCGTGTGTATCTAAATTACTTTTCACTTGTTAAAATTTCTCTAAGTTATCTCTTATAGGAACTTTTATTTTTAGGCTTTTCTAATTCTTTCTCTAACATATATTATGCTCTTTACTTTTGTTGATCCGCAAATGAGGCAAGAAGAAATCACTTAATTTTAAACGTGTAAATTAGTAAACTTGGAGATGAGGTGACCAACAAAACAAATAGAAACTTCATGTCGGTATGGTGCTTGCTATATAGACTTTGAAAAAAGAAAGATAATGCAACAAGTTTAGGGTTTCAGAATGAGGATTCAACATAGAACTTAGGACTTATATGCCTTTTAGTCATAATGTTGTATTTATATGAAGGTTGACGTAAGGTTTCTGATTTTCCTCTCAGATTAGACTAGAAAAAAATTGAATCAAGTATATATTGAGGTCTCATAAGTTGGGGGTGTACAAGAGAAGATTGGGTGGCCTCAACCTCGAGCTCTCCTACCTTTGTTGAGGAGGCATTTTGGGCTTTTACGACCCCCTTGGTCTTCTTCCCCCATGGCTAAACTAGGCCTTCGGTTTAGTTTGTCACTAGACTCGAGTGTTTATTCACCTGGGCTGGATTAGCCTTGGCCTCACTTCGTTCTAGTTCTATTTCCTAATAATTCTCAAATCCTTCCCTAGTTTTGTTTTTTGTTTTGTTTTGTTTTGTTTTTTTTTTGGGTTACTTAGATCCTAACAAATTGTTACCACTCATAAGTTGGAATTCATGGCTTAGTTTTTTAATCGTTATGAGCTAGGCTTTGTATCCTAATTTGGTAGTATAATATTTTTGTCAAAGTTGTCTTCGTGTGTATTGTTTGTGTTCTACTTTAGTAGGGTGATTTTGGACAATTGAATCTGAGCTCCTCACTAGGTCAAGCTCAAAATTTTAGGCTTGCCCAATAACCAACTTGGCCTATCATTTTAGCTTTATGGTTTCAACCAAACTAGTTATTTTGATGATAAAAAATAAAATATTTTGTACTAATAGATTTAGTATTTCAAAGCTTATATCTTGTAGAGCTCAAATAGGAAATTCTAAGACATCTTGAATCGTTTGAATCGACTGAGAAACATATGGGCAAAAGAAGATTGGAGGCAAAATCTTATCTCATGTTGACACATGGCACCATGTTGACATGGTACTCGATAATTTTTTATTGACATGCCCGATTATGTGGTAGATGACATGGATGAACAAAAAGATTGCACATGGCAACTTTGTTTGACTAAAATAAAAGTGTTTATCAAAGGCTAATGTGCAGAAGGAGCTGATGGAAGCACATGATACCATATCATGTTATCTTTAGGGCTTCAATCAAACCATATATTTTGATGATAACAATTTAATTTTTTGTATCGATAGTTTTAGTGTTTCAAAGTTTCTATTTGTAGAGCTTGAATAGGCAATTCTAAGGCATCTCGAATCGTTTAAATTGAAGTTCAAACGAGAAAGATATGACAAAAGATTGGAGGCAATATCCTATGTGGTGTTGACACGTGGCATTGTGCAAACGTGGTACTCAATGAACTTTTTATTGACATGCCAGATGAACCAACAAAAGGATGACATGTGGCAACTTGTTTGATTTAATAAGGAAAGGTATTTTTTCATCTTCTTCCTCCAAAAATTATTGAGACAACGACCCTCAACATATCTCCGCAATGGTTAAAAAATGATTTCTTAGCCTTTTATTTAGAGTTATTGAATGATATTTTGTTACATTTGATAGTGTTTGCTAGTGTTTTTCAGATATTGAGCTTGAGAACAAGATTTAGAGCTAAAAAGAGCCAAAACAGCACAGTATGCAACAAAACAAACGACAACAAGAAAAATACTTTCTTGAACAACAGTAACAAGTTTGAACAAAACCAGACAAAAGATCAGAGTGAGAACTAACTAAACAAAACAGCGAAAACACCTGCATAAGTCTCCCCCTTAGGTTGCCAATAAGAAACCGTTGAAAAAGTAGAGCACAATCACAAATCAGAGACAAGATATTTGGGTTTTGAGAAAATAGGATGCTAGAGATCAATCTTGGAAAACAAATTGGAAGCTTAACAACATATGAGTCGATATGGCGAAGAATTTGATTTGTAGAAAGAACTCCAAAGTTAAAGGAGCCTGATTCCCAATTTGATATTACGTAATAGATAGGGTTAGAGACATGGGACAGTAGCTGTATGACCTTCTAGGTAGACAACTAGTTCTTGATCCTTAGACTCTAGAACTCTATGTATATATCGATCAATGTACCTTGTTGATATGATACAAATTAAACAATTGGTCACTTTCTTTGTTGTGAATTATTCTAGTGAATTAGTTGATTTTTGTGTTTGTTGAAAGTTGAGTTGTGTATACAAAAACAATTTAGATTTTATTTTATGACTATGCAGGGGTGAAAGAGAAATATTATTAGTTAGCCCATGCACAATCAACAATTGTCTCCTATCACAAACACAGAGATTTAATGTCGGACAAACTGCCTTAATGTCGGTCATTGACTGAATTCAAAAGTGGGTTGATCAAAGATTGTGTGGTTGTAGGTGATCGACATTGAACACCTTTAATAACACCTTCTTTGCCCATACGTCATCGTATCCCTATAATGTCGATTTTTCGCTGACATTAAAGGCCAATTTTGTACTAGTGTGTTGATAGGTTTGTTCGTTGAGAGACCTAAATAATCTTGTACTTTGTTTGAGGGAACAATCGTTGAAAATGCAAACAAAGTCCAACATTGGTTACAGAAGATAGATATTCATGGTATATAAGTACGGACAATTATTTCAATTGATATGAGAGACCTTTTGGAGTGATTTTAAAAGAACAATTACGAGGGTTTATGCCAAAAGTGGACAATATCATACTCGTACATCTATGTGGAGATTTATTTTCTTGTCATTATACTTTCTAGTTACTTAATTTGTATACACAATAACTAAAATTGAATCATGAAATGCTTAATTATTCTCTTTAACACTTGTAGGTTAACATTTTCTTTCTCCACATATATTATGTAATTTTGTTGATTGCATGAATATATTATCAAAAAGATAGTCTTACATGCTAACATAACGTTTTTGCAACGAATATGCTAATTTTTTTACTAACGAATTGGAGATTGTTTTGTTAGCATTAGTTATTTTGAATTCCTAATTTAAGTTACAAAACAATGTTGTCATTTGGCTGAAACTACAAAGTTGGCAAAAAAAAAAAAAATTAATCATACCATTATTCAAACATGTTCTTGTTGGGTCAGATTCAAGCGAGATAAACATATGCAACAAATAGTAAAACAACCTCATATTAAAAATAGCTATTCAAATATATAAATATTCTTACCTTTTGAAGTCTTTATCATCATAAGTGACTTACGTTTTAAGTCTTGTATTGGTTTTGATATCGATAATGACCATGTCAAAGGGAATCACACTTGTTTTTATTGGAATTCTCTTGGTTAACTTTGACATGATTGAGATAACAAATACAAGAAAATACATTGGTTATGGTCCTTTAAAAGGAGATGTTAGTCCTGGATGTAGCCGAAAGCATCCTAAACTTTGTAAATTAACTCCTGCAAATCCATATCGAAGAGGTTGCAATGCAATCGAACGTTGCAGGGGAAGAAATGATATTATAGATGGTGTAGAAGAAATTGCTAAAGGGGATGCTTCCACTAGGCCAACAATGAGCCCGAATGAAGAATACCATCTAGACTGA

mRNA sequence

ATGTGGGGAATCACACTTGTTTTTATTGGAATTCTCTTGGTTAACTTTGACATGATTGAGATAACAAATACAAGAAAATACATTGGTTATGGTCCTTTAAAAGGAGATGTTAGTCCTGGATGTAGCCGAAAGCATCCTAAACTTTGTAAATTAACTCCTGCAAATCCATATCGAAGAGGTTGCAATGCAATCGAACGTTGCAGGGGAAGAAATGATATTATAGATGGTGTAGAAGAAATTGCTAAAGGGGATGCTTCCACTAGGCCAACAATGAGCCCGAATGAAGAATACCATCTAGACTGA

Coding sequence (CDS)

ATGTGGGGAATCACACTTGTTTTTATTGGAATTCTCTTGGTTAACTTTGACATGATTGAGATAACAAATACAAGAAAATACATTGGTTATGGTCCTTTAAAAGGAGATGTTAGTCCTGGATGTAGCCGAAAGCATCCTAAACTTTGTAAATTAACTCCTGCAAATCCATATCGAAGAGGTTGCAATGCAATCGAACGTTGCAGGGGAAGAAATGATATTATAGATGGTGTAGAAGAAATTGCTAAAGGGGATGCTTCCACTAGGCCAACAATGAGCCCGAATGAAGAATACCATCTAGACTGA

Protein sequence

MWGITLVFIGILLVNFDMIEITNTRKYIGYGPLKGDVSPGCSRKHPKLCKLTPANPYRRGCNAIERCRGRNDIIDGVEEIAKGDASTRPTMSPNEEYHLD

Homology

[Close]

BLAST of Lsi06G001010 vs. ExPASy Swiss-Prot
Match: A8MQM2 (Protein RALF-like 6 OS=Arabidopsis thaliana OX=3702 GN=RALFL6 PE=3 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 7.0e-07
Identity = 24/65 (36.92%), Postives = 35/65 (53.85%), Query Frame = 0


Query: 4  ITLVFIGILLVNFDMIEITNTRKYIGYGPLKGDVSPGCSRKHPKLCKLTPANPYRRGCNA 63
          I + F+ ++++          + YI Y  +KGD+ PGCS K+PK C   PA  Y RGC  
Sbjct: 9  IRIFFVSVMIILSLFSGFGEGQTYINYNGMKGDIIPGCSSKNPKECVKIPAYSYNRGCEI 68

Query: 64 IERCR 69
            RC+
Sbjct: 69 STRCQ 73

[Close]

BLAST of Lsi06G001010 vs. ExPASy Swiss-Prot
Match: A8MQM7 (Protein RALF-like 15 OS=Arabidopsis thaliana OX=3702 GN=RALFL15 PE=3 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.2e-06
Identity = 28/65 (43.08%), Postives = 35/65 (53.85%), Query Frame = 0


Query: 7  VFIGILLVNFDMIEITNTR--KYIGY-GPLKGDVSPGCSRKHPKLCKLTPANPYRRGCNA 66
          V + + L+ F  +  T     +YI Y G   GD +  C + HP  CK   ANPYRRGC  
Sbjct: 9  VIVSLALILFLALAATKVEATRYISYRGMNHGDHAIHCDKAHPNTCKKQVANPYRRGCGT 68

Query: 67 IERCR 69
          IERCR
Sbjct: 69 IERCR 73

[Close]

BLAST of Lsi06G001010 vs. ExPASy Swiss-Prot
Match: A8MQL7 (Protein RALF-like 20 OS=Arabidopsis thaliana OX=3702 GN=RALFL20 PE=3 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 2.0e-06
Identity = 23/58 (39.66%), Postives = 32/58 (55.17%), Query Frame = 0


Query: 12 LLVNFDMIEITNTRKYIGYGPLKGDVSPGCSRKHPKLCKLTPANPYRRGCNAIERCRG 70
          L++   ++  T   K IG   ++ D   GC    P  CK+ PANPY+ GC A +RCRG
Sbjct: 14 LMIILSIVMSTTEAKTIGNPAMREDEPKGCPPGSPASCKMQPANPYKPGCEASQRCRG 71

[Close]

BLAST of Lsi06G001010 vs. ExPASy Swiss-Prot
Match: Q3ECL0 (Protein RALF-like 9 OS=Arabidopsis thaliana OX=3702 GN=RALFL9 PE=3 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 2.7e-06
Identity = 27/66 (40.91%), Postives = 36/66 (54.55%), Query Frame = 0


Query: 7  VFIGILLVNFDMIEITNTR--KYIGYGPL-KGDVSPGCSRKHPKLCKLTPANPYRRGCNA 66
          V + + LV F  +  T     +YI Y  + +GD +  C + HP  CK   ANPY+RGC  
Sbjct: 9  VILSLALVVFLALAATKVEATRYITYPAIDRGDHAVHCDKAHPNTCKKKEANPYQRGCEK 68

Query: 67 IERCRG 70
          I RCRG
Sbjct: 69 INRCRG 74

[Close]

BLAST of Lsi06G001010 vs. ExPASy Swiss-Prot
Match: A8MRM1 (Protein RALF-like 16 OS=Arabidopsis thaliana OX=3702 GN=RALFL16 PE=3 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 1.3e-05
Identity = 25/64 (39.06%), Postives = 34/64 (53.12%), Query Frame = 0


Query: 4  ITLVFIGILLVNFDMIEITNTRKYIGYGPLKGDVSPGCSRKHPKLCKLTPANPYRRGCNA 63
          I  +F  ++LV F +   +   + +GYG +KGD  P C  K+P  C   P N Y RGC  
Sbjct: 9  IVFLFATMMLVMF-LFCGSGEARTLGYGSIKGDRIPACGYKNPNSCVKQPVNHYHRGCEK 68

Query: 64 IERC 68
          I RC
Sbjct: 69 ITRC 71

[Close]

BLAST of Lsi06G001010 vs. ExPASy TrEMBL
Match: A0A0A0L8B1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G426350 PE=3 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 5.4e-26
Identity = 62/94 (65.96%), Postives = 74/94 (78.72%), Query Frame = 0


Query: 4   ITLVFIGILLVNFDMIEITNTRKYIGYGPL-KGDVSPGCSRKHPKLCKLTPANPYRRGCN 63
           +TLVFIGILLV+FDMI ITN RK+I YG +  GDVSPGCS  HP+LC++  ANPY+RGCN
Sbjct: 7   MTLVFIGILLVSFDMIMITNARKFIDYGSIVAGDVSPGCSPTHPELCRVKSANPYQRGCN 66

Query: 64  AIERCRGRNDIIDGVEEIAKGDASTRPTMSPNEE 97
            I+RCR  NDIID  EE  +GDAS  P++SPN E
Sbjct: 67  RIDRCREGNDIIDAEEEHIEGDASISPSISPNIE 100

[Close]

BLAST of Lsi06G001010 vs. ExPASy TrEMBL
Match: A0A6J1DYH7 (uncharacterized protein LOC111025777 OS=Momordica charantia OX=3673 GN=LOC111025777 PE=3 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 1.4e-21
Identity = 50/86 (58.14%), Postives = 63/86 (73.26%), Query Frame = 0


Query: 3  GITLVFIGILLVNFDMIEITNTRKYIGYGPLKGDVSPGCSRKHPKLCKLTPANPYRRGCN 62
          G   +F+GILL    MI+ITN  ++I Y PL+GDVSPGCS  HP+LCKL  ANPY+RGC 
Sbjct: 6  GSMFIFVGILLYCMGMIDITNATRFIHYDPLRGDVSPGCSPTHPELCKLHSANPYKRGCT 65

Query: 63 AIERCRGRNDIIDGVEEIAKGDASTR 89
          +I+RCRG +DIID  E I +GDA  +
Sbjct: 66 SIDRCRGGSDIIDDAEMIVEGDAENK 91

[Close]

BLAST of Lsi06G001010 vs. ExPASy TrEMBL
Match: A0A6J1C8U5 (uncharacterized protein LOC111008495 OS=Momordica charantia OX=3673 GN=LOC111008495 PE=3 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 1.3e-19
Identity = 57/83 (68.67%), Postives = 63/83 (75.90%), Query Frame = 0


Query: 3  GITLVFIGILLVNFDMIEITNTRKYIGYGPLKGDVSPGCSRKHPKLCKLTPANPYRRGCN 62
          G  LVFIGILLV+F MIEITN  +YI Y  LK DVSPGCS KHP LCKL  AN Y+RGC+
Sbjct: 6  GSMLVFIGILLVSFRMIEITNAIQYINYHALKTDVSPGCSPKHPGLCKLHEANSYQRGCS 65

Query: 63 AIERCRGRNDIIDGVEEIAKGDA 86
          AI RCR R+D ID  E+I KGDA
Sbjct: 66 AINRCR-RDDYIDSEEKI-KGDA 86

[Close]

BLAST of Lsi06G001010 vs. ExPASy TrEMBL
Match: A0A6J1HAJ8 (protein RALF-like 9 OS=Cucurbita moschata OX=3662 GN=LOC111462118 PE=3 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 1.5e-15
Identity = 51/110 (46.36%), Postives = 63/110 (57.27%), Query Frame = 0


Query: 3   GITLVFIGILLVNFDMIEITNTRKYIGYGPLKGDVSPGCSRKHPKLCKLTPANPYRRGCN 62
           G  ++FI +L V+ +MIEITN   YI Y PLK +    CS  HP LCK TPANPY+RGCN
Sbjct: 4   GTMIIFIVVLFVSINMIEITNATHYINYDPLKKNRDLVCSPTHPDLCKTTPANPYQRGCN 63

Query: 63  AIERCRG--RNDIIDGVEEIAKG--------------DASTRPTMSPNEE 97
            I+RCRG   +DIID  EE                  D ++ P +SPN E
Sbjct: 64  PIDRCRGAESDDIIDNDEEDITNNDEEDDIVDNDEGYDNASCPAISPNGE 113

[Close]

BLAST of Lsi06G001010 vs. ExPASy TrEMBL
Match: A0A2K3KXF8 (Uncharacterized protein OS=Trifolium pratense OX=57577 GN=L195_g057917 PE=3 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 5.8e-12
Identity = 35/64 (54.69%), Postives = 44/64 (68.75%), Query Frame = 0


Query: 6  LVFIGILLVNFDMIEITNTRKYIGYGPLKGDVSPGCSRKHPKLCKLTPANPYRRGCNAIE 65
          +VF+  LL+     +    +K+IGYG +  D+SPGCS KHP+LCK  PANPYRRGC A  
Sbjct: 7  VVFLSALLICTFFTQDVEAKKFIGYGAIGRDISPGCSPKHPELCKFHPANPYRRGCEAEM 66

Query: 66 RCRG 70
          RCRG
Sbjct: 67 RCRG 70

[Close]

BLAST of Lsi06G001010 vs. NCBI nr
Match: KAE8650705.1 (hypothetical protein Csa_010421 [Cucumis sativus])

HSP 1 Score: 125.6 bits (314), Expect = 2.5e-25
Identity = 61/94 (64.89%), Postives = 74/94 (78.72%), Query Frame = 0


Query: 4   ITLVFIGILLVNFDMIEITNTRKYIGYGPL-KGDVSPGCSRKHPKLCKLTPANPYRRGCN 63
           +TLVFIGILLV+FDMI ITN +K+I YG +  GDVSPGCS  HP+LC++  ANPY+RGCN
Sbjct: 7   MTLVFIGILLVSFDMIMITNAKKFIDYGSIVAGDVSPGCSPTHPELCRVKSANPYQRGCN 66

Query: 64  AIERCRGRNDIIDGVEEIAKGDASTRPTMSPNEE 97
            I+RCR  NDIID  EE  +GDAS  P++SPN E
Sbjct: 67  RIDRCREGNDIIDAEEEHIEGDASISPSISPNIE 100

[Close]

BLAST of Lsi06G001010 vs. NCBI nr
Match: XP_022159360.1 (uncharacterized protein LOC111025777 [Momordica charantia])

HSP 1 Score: 112.1 bits (279), Expect = 2.8e-21
Identity = 50/86 (58.14%), Postives = 63/86 (73.26%), Query Frame = 0


Query: 3  GITLVFIGILLVNFDMIEITNTRKYIGYGPLKGDVSPGCSRKHPKLCKLTPANPYRRGCN 62
          G   +F+GILL    MI+ITN  ++I Y PL+GDVSPGCS  HP+LCKL  ANPY+RGC 
Sbjct: 6  GSMFIFVGILLYCMGMIDITNATRFIHYDPLRGDVSPGCSPTHPELCKLHSANPYKRGCT 65

Query: 63 AIERCRGRNDIIDGVEEIAKGDASTR 89
          +I+RCRG +DIID  E I +GDA  +
Sbjct: 66 SIDRCRGGSDIIDDAEMIVEGDAENK 91

[Close]

BLAST of Lsi06G001010 vs. NCBI nr
Match: XP_022136918.1 (uncharacterized protein LOC111008495 [Momordica charantia])

HSP 1 Score: 105.5 bits (262), Expect = 2.7e-19
Identity = 57/83 (68.67%), Postives = 63/83 (75.90%), Query Frame = 0


Query: 3  GITLVFIGILLVNFDMIEITNTRKYIGYGPLKGDVSPGCSRKHPKLCKLTPANPYRRGCN 62
          G  LVFIGILLV+F MIEITN  +YI Y  LK DVSPGCS KHP LCKL  AN Y+RGC+
Sbjct: 6  GSMLVFIGILLVSFRMIEITNAIQYINYHALKTDVSPGCSPKHPGLCKLHEANSYQRGCS 65

Query: 63 AIERCRGRNDIIDGVEEIAKGDA 86
          AI RCR R+D ID  E+I KGDA
Sbjct: 66 AINRCR-RDDYIDSEEKI-KGDA 86

[Close]

BLAST of Lsi06G001010 vs. NCBI nr
Match: XP_022961577.1 (protein RALF-like 9 [Cucurbita moschata])

HSP 1 Score: 92.0 bits (227), Expect = 3.0e-15
Identity = 51/110 (46.36%), Postives = 63/110 (57.27%), Query Frame = 0


Query: 3   GITLVFIGILLVNFDMIEITNTRKYIGYGPLKGDVSPGCSRKHPKLCKLTPANPYRRGCN 62
           G  ++FI +L V+ +MIEITN   YI Y PLK +    CS  HP LCK TPANPY+RGCN
Sbjct: 4   GTMIIFIVVLFVSINMIEITNATHYINYDPLKKNRDLVCSPTHPDLCKTTPANPYQRGCN 63

Query: 63  AIERCRG--RNDIIDGVEEIAKG--------------DASTRPTMSPNEE 97
            I+RCRG   +DIID  EE                  D ++ P +SPN E
Sbjct: 64  PIDRCRGAESDDIIDNDEEDITNNDEEDDIVDNDEGYDNASCPAISPNGE 113

[Close]

BLAST of Lsi06G001010 vs. NCBI nr
Match: XP_023546462.1 (protein RALF-like 9 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 88.2 bits (217), Expect = 4.4e-14
Identity = 50/109 (45.87%), Postives = 63/109 (57.80%), Query Frame = 0


Query: 6   LVFIGILLVNFDMIEITNTRKYIGYGPLKGDVSPGCSRKHPKLCKLTPANPYRRGCNAIE 65
           ++FI +L V+ +MIEITN   YI Y PLK +    CS  HP LCK  PANPY+RGCN I+
Sbjct: 2   VIFIVVLFVSINMIEITNATHYINYDPLKKNRDLVCSPTHPDLCKKIPANPYQRGCNPID 61

Query: 66  RCRG--RNDIIDGVEE--IAKGDA-------------STRPTMSPNEEY 98
           RCRG   +DIID  EE  I   D              ++ P +SPN E+
Sbjct: 62  RCRGAESDDIIDNDEEDDITNNDEEDDIIDNDEGYDDASCPAISPNGEF 110

[Close]

BLAST of Lsi06G001010 vs. TAIR 10
Match: AT1G60625.1 (RALF-like 6 )

HSP 1 Score: 54.7 bits (130), Expect = 5.0e-08
Identity = 24/65 (36.92%), Postives = 35/65 (53.85%), Query Frame = 0


Query: 4  ITLVFIGILLVNFDMIEITNTRKYIGYGPLKGDVSPGCSRKHPKLCKLTPANPYRRGCNA 63
          I + F+ ++++          + YI Y  +KGD+ PGCS K+PK C   PA  Y RGC  
Sbjct: 9  IRIFFVSVMIILSLFSGFGEGQTYINYNGMKGDIIPGCSSKNPKECVKIPAYSYNRGCEI 68

Query: 64 IERCR 69
            RC+
Sbjct: 69 STRCQ 73

[Close]

BLAST of Lsi06G001010 vs. TAIR 10
Match: AT2G22055.1 (RALF-like 15 )

HSP 1 Score: 53.9 bits (128), Expect = 8.5e-08
Identity = 28/65 (43.08%), Postives = 35/65 (53.85%), Query Frame = 0


Query: 7  VFIGILLVNFDMIEITNTR--KYIGY-GPLKGDVSPGCSRKHPKLCKLTPANPYRRGCNA 66
          V + + L+ F  +  T     +YI Y G   GD +  C + HP  CK   ANPYRRGC  
Sbjct: 9  VIVSLALILFLALAATKVEATRYISYRGMNHGDHAIHCDKAHPNTCKKQVANPYRRGCGT 68

Query: 67 IERCR 69
          IERCR
Sbjct: 69 IERCR 73

[Close]

BLAST of Lsi06G001010 vs. TAIR 10
Match: AT2G34825.1 (RALF-like 20 )

HSP 1 Score: 53.1 bits (126), Expect = 1.5e-07
Identity = 23/58 (39.66%), Postives = 32/58 (55.17%), Query Frame = 0


Query: 12 LLVNFDMIEITNTRKYIGYGPLKGDVSPGCSRKHPKLCKLTPANPYRRGCNAIERCRG 70
          L++   ++  T   K IG   ++ D   GC    P  CK+ PANPY+ GC A +RCRG
Sbjct: 14 LMIILSIVMSTTEAKTIGNPAMREDEPKGCPPGSPASCKMQPANPYKPGCEASQRCRG 71

[Close]

BLAST of Lsi06G001010 vs. TAIR 10
Match: AT1G61566.1 (ralf-like 9 )

HSP 1 Score: 52.8 bits (125), Expect = 1.9e-07
Identity = 27/66 (40.91%), Postives = 36/66 (54.55%), Query Frame = 0


Query: 7  VFIGILLVNFDMIEITNTR--KYIGYGPL-KGDVSPGCSRKHPKLCKLTPANPYRRGCNA 66
          V + + LV F  +  T     +YI Y  + +GD +  C + HP  CK   ANPY+RGC  
Sbjct: 9  VILSLALVVFLALAATKVEATRYITYPAIDRGDHAVHCDKAHPNTCKKKEANPYQRGCEK 68

Query: 67 IERCRG 70
          I RCRG
Sbjct: 69 INRCRG 74

[Close]

BLAST of Lsi06G001010 vs. TAIR 10
Match: AT2G32835.1 (RALF-like 16 )

HSP 1 Score: 50.4 bits (119), Expect = 9.4e-07
Identity = 25/64 (39.06%), Postives = 34/64 (53.12%), Query Frame = 0


Query: 4  ITLVFIGILLVNFDMIEITNTRKYIGYGPLKGDVSPGCSRKHPKLCKLTPANPYRRGCNA 63
          I  +F  ++LV F +   +   + +GYG +KGD  P C  K+P  C   P N Y RGC  
Sbjct: 9  IVFLFATMMLVMF-LFCGSGEARTLGYGSIKGDRIPACGYKNPNSCVKQPVNHYHRGCEK 68

Query: 64 IERC 68
          I RC
Sbjct: 69 ITRC 71

The following BLAST results are available for this feature:

BLAST of Lsi06G001010 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A8MQM2	7.0e-07	36.92	Protein RALF-like 6 OS=Arabidopsis thaliana OX=3702 GN=RALFL6 PE=3 SV=1	[more]
A8MQM7	1.2e-06	43.08	Protein RALF-like 15 OS=Arabidopsis thaliana OX=3702 GN=RALFL15 PE=3 SV=1	[more]
A8MQL7	2.0e-06	39.66	Protein RALF-like 20 OS=Arabidopsis thaliana OX=3702 GN=RALFL20 PE=3 SV=1	[more]
Q3ECL0	2.7e-06	40.91	Protein RALF-like 9 OS=Arabidopsis thaliana OX=3702 GN=RALFL9 PE=3 SV=1	[more]
A8MRM1	1.3e-05	39.06	Protein RALF-like 16 OS=Arabidopsis thaliana OX=3702 GN=RALFL16 PE=3 SV=1	[more]

BLAST of Lsi06G001010 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L8B1	5.4e-26	65.96	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G426350 PE=3 SV=1	[more]
A0A6J1DYH7	1.4e-21	58.14	uncharacterized protein LOC111025777 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]
A0A6J1C8U5	1.3e-19	68.67	uncharacterized protein LOC111008495 OS=Momordica charantia OX=3673 GN=LOC111008...	[more]
A0A6J1HAJ8	1.5e-15	46.36	protein RALF-like 9 OS=Cucurbita moschata OX=3662 GN=LOC111462118 PE=3 SV=1	[more]
A0A2K3KXF8	5.8e-12	54.69	Uncharacterized protein OS=Trifolium pratense OX=57577 GN=L195_g057917 PE=3 SV=1	[more]

BLAST of Lsi06G001010 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8650705.1	2.5e-25	64.89	hypothetical protein Csa_010421 [Cucumis sativus]	[more]
XP_022159360.1	2.8e-21	58.14	uncharacterized protein LOC111025777 [Momordica charantia]	[more]
XP_022136918.1	2.7e-19	68.67	uncharacterized protein LOC111008495 [Momordica charantia]	[more]
XP_022961577.1	3.0e-15	46.36	protein RALF-like 9 [Cucurbita moschata]	[more]
XP_023546462.1	4.4e-14	45.87	protein RALF-like 9 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Lsi06G001010 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G60625.1	5.0e-08	36.92	RALF-like 6	[more]
AT2G22055.1	8.5e-08	43.08	RALF-like 15	[more]
AT2G34825.1	1.5e-07	39.66	RALF-like 20	[more]
AT1G61566.1	1.9e-07	40.91	ralf-like 9	[more]
AT2G32835.1	9.4e-07	39.06	RALF-like 16	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008801	Rapid ALkalinization Factor	PFAM	PF05498	RALF	coord: 23..69 e-value: 1.7E-11 score: 44.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 81..100
None	No IPR available	PANTHER	PTHR34270	PROTEIN RALF-LIKE 15-RELATED	coord: 4..86
None	No IPR available	PANTHER	PTHR34270:SF10	SUBFAMILY NOT NAMED	coord: 4..86

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi06G001010.1	Lsi06G001010.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0110165	cellular anatomical entity