Lsi06G000980 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi06G000980
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Descriptiontranslationally-controlled tumor protein homolog
Locationchr06: 992305 .. 994051 (-)
RNA-Seq ExpressionLsi06G000980
SyntenyLsi06G000980
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATATATCTCCTTCGTTCTTTCTTCAATTTCTTTTCCAATCTCTTCTTTGATTCTTCCTTTTGAAGCCAAAGCAGCCATGCTTGTTTACCAAGACCTACTAACAGGTTTCATTCTCTCTTCTTCAACCTTATTTCTTTGTTTTGTTATCGTCTTCTTCAAAGATTATGCTTCGTTTGCTAACTATTTAATTTTTTTAAATTTAAATCTATTTTCTCTTAATTTAGTGCAATAGTGTTTGTGCTTGTTTAGATTGACTTTGTTTATAAATGCAAAAAAAAGTGTTTATAAACCATTAGAAATTCAATCCAAACGGGTCATTCATCTTCATAAAGTAAACTAGTTGAATTCTTAGTTAAATTTTAAAAACTATTTTTTTTAGTTTTTCAAAACTTAGCTTGATTTTTGAAAATATAAGTGTTTATGGATTTAATTTTCAAAAACTAAATGATTACCAAACGAGGCATTAGTTTTTGTTTATTGGAATTTGACTAAGAATTGATCTAAGTGTTTAGTAAATTTTCCAAAAACCAATTGGTCACAAACCGAGGTCTTAGATTTTTGTTTTTTGGATTATTATTATTATTATTTACTAAAAATTAGGTTTTGTTTGGTAACAATTTAGTTTTTGAAAATGGTATGATTTACATCTTTTCTAACCCGTTTTTAAGAAATTACGACCTCATTAGATAACTATTTGGTTTTTCTTATTCTCGTTTATCTTGACTAGACTTCTTGAATGAACTTTCAGGTGATGAACTTCTTTCTGACTCTTTTCCATATGAGGAAATTGAGAATGGGATGCTGTGGGAAGTGGAAGGGAAGGTAAGAAAAAATCCTTGTTTTTCCAATAAGATTTAGAATTTTACATTTTAGTTCTTGTTTTTGCTTCATTCCAATTTGAATAAATCAATCCATACAAGGGAATAAAAGAAAACATTCTTAAGCTATTAAAAAACTTTCTTCCTTTTTTTTTTTTTTTTTGACAGTGGGTTGTACAAGGGGCGGTCGACATAGACATCGGAGCTAACCCATCTGCCGAAGGTGCCGATGAGGACGAAGGTGTGGATGATCAAGCTGTCAAGGTTGTAGATATTGTCGACACATTTAGACTTCAGGTAAGAAATTATTTATCTTTTTAATTGTCTAATATTAGTTTTTTTCTTCTATGTTTGCCTTTGAATTGCTAAGAGAAGTGATGGGTATTTGGCAGGAACAACCTCCATTTGACAAGAAGCAATTCATCACATACATGAAAAGATACATCAAGTTGCTAACTCCCAAGTTAGATGAAGAAAAACAAGAGTTGTTTAAGAAGCACATTCCAGATGCAACCAAGTTTCTGATTTCAAAGATCAATGACCTCCAATTGTAAGTTCCAATCACTTGAAAAATTGGGTCGGGTTAGGAAGTTCTTGATCTCATAAAGACCCGACCCATTGACACGTTTATAGTATCTTTCAATCTGTGTTCGATAAGATGCCAGATTGCAAAAAAGTCTTTAATTGAGGAGTGTTATTGTTTGTGTTTTAATGTAGCTTTGTGGGGGAAGGAATGCATGATGATGGGACTATGGTATTTGCATACTACAAAGAAGGGGCAACTGATCCTACCTTTATATATATTGCCTATGGGTTGAAGGAAGTCAAGTGCTGAAGGAATCTCATCAATTTTCATCACAATACTTTTCTTTTTCATTTTACTTTTATTGCTTTTTTAGTTCATTTTCGGTTTTTTTTTTTTTTTTTTT

mRNA sequence

ATATATCTCCTTCGTTCTTTCTTCAATTTCTTTTCCAATCTCTTCTTTGATTCTTCCTTTTGAAGCCAAAGCAGCCATGCTTGTTTACCAAGACCTACTAACAGACTTCTTGAATGAACTTTCAGGTGATGAACTTCTTTCTGACTCTTTTCCATATGAGGAAATTGAGAATGGGATGCTGTGGGAAGTGGAAGGGAAGTGGGTTGTACAAGGGGCGGTCGACATAGACATCGGAGCTAACCCATCTGCCGAAGGTGCCGATGAGGACGAAGGTGTGGATGATCAAGCTGTCAAGGTTGTAGATATTGTCGACACATTTAGACTTCAGGAACAACCTCCATTTGACAAGAAGCAATTCATCACATACATGAAAAGATACATCAAGTTGCTAACTCCCAAGTTAGATGAAGAAAAACAAGAGTTGTTTAAGAAGCACATTCCAGATGCAACCAAGTTTCTGATTTCAAAGATCAATGACCTCCAATTCTTTGTGGGGGAAGGAATGCATGATGATGGGACTATGGTATTTGCATACTACAAAGAAGGGGCAACTGATCCTACCTTTATATATATTGCCTATGGGTTGAAGGAAGTCAAGTGCTGAAGGAATCTCATCAATTTTCATCACAATACTTTTCTTTTTCATTTTACTTTTATTGCTTTTTTAGTTCATTTTCGGTTTTTTTTTTTTTTTTTTT

Coding sequence (CDS)

ATGCTTGTTTACCAAGACCTACTAACAGACTTCTTGAATGAACTTTCAGGTGATGAACTTCTTTCTGACTCTTTTCCATATGAGGAAATTGAGAATGGGATGCTGTGGGAAGTGGAAGGGAAGTGGGTTGTACAAGGGGCGGTCGACATAGACATCGGAGCTAACCCATCTGCCGAAGGTGCCGATGAGGACGAAGGTGTGGATGATCAAGCTGTCAAGGTTGTAGATATTGTCGACACATTTAGACTTCAGGAACAACCTCCATTTGACAAGAAGCAATTCATCACATACATGAAAAGATACATCAAGTTGCTAACTCCCAAGTTAGATGAAGAAAAACAAGAGTTGTTTAAGAAGCACATTCCAGATGCAACCAAGTTTCTGATTTCAAAGATCAATGACCTCCAATTCTTTGTGGGGGAAGGAATGCATGATGATGGGACTATGGTATTTGCATACTACAAAGAAGGGGCAACTGATCCTACCTTTATATATATTGCCTATGGGTTGAAGGAAGTCAAGTGCTGA

Protein sequence

MLVYQDLLTDFLNELSGDELLSDSFPYEEIENGMLWEVEGKWVVQGAVDIDIGANPSAEGADEDEGVDDQAVKVVDIVDTFRLQEQPPFDKKQFITYMKRYIKLLTPKLDEEKQELFKKHIPDATKFLISKINDLQFFVGEGMHDDGTMVFAYYKEGATDPTFIYIAYGLKEVKC
Homology
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BLAST of Lsi06G000980 vs. ExPASy Swiss-Prot
Match: Q5J907 (Translationally-controlled tumor protein homolog OS=Elaeis guineensis var. tenera OX=51953 GN=TCTP PE=2 SV=1)

HSP 1 Score: 297.4 bits (760), Expect = 1.1e-79
Identity = 144/175 (82.29%), Postives = 158/175 (90.29%), Query Frame = 0 

Query: 1   MLVYQDLLTDFLNELSGDELLSDSFPYEEIENGMLWEVEGKWVVQGAVDIDIGANPSAEG 60
           MLVYQDLLT       GDELLSDSFPY+EI NGMLWEVEGKWV+QGAV++DIGANPSAEG
Sbjct: 1   MLVYQDLLT-------GDELLSDSFPYKEIHNGMLWEVEGKWVIQGAVNVDIGANPSAEG 60

Query: 61  ADEDEGVDDQAVKVVDIVDTFRLQEQPPFDKKQFITYMKRYIKLLTPKLDEEKQELFKKH 120
            +EDEGVDDQAVKVVDIVDTFRLQEQP FDKKQF+T+MKRYIK LTPKLD EKQELFKKH
Sbjct: 61  GEEDEGVDDQAVKVVDIVDTFRLQEQPAFDKKQFVTFMKRYIKNLTPKLDAEKQELFKKH 120

Query: 121 IPDATKFLISKINDLQFFVGEGMHDDGTMVFAYYKEGATDPTFIYIAYGLKEVKC 176
           I  ATKFL+SK++DLQFFVGE MHDDG +VFAYYK+GATDPTF+Y AYGLKE+KC
Sbjct: 121 IEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKDGATDPTFLYFAYGLKEIKC 168

[Close]
BLAST of Lsi06G000980 vs. ExPASy Swiss-Prot
Match: Q9ZSW9 (Translationally-controlled tumor protein homolog OS=Hevea brasiliensis OX=3981 GN=TCTP PE=2 SV=1)

HSP 1 Score: 297.4 bits (760), Expect = 1.1e-79
Identity = 146/175 (83.43%), Postives = 159/175 (90.86%), Query Frame = 0 

Query: 1   MLVYQDLLTDFLNELSGDELLSDSFPYEEIENGMLWEVEGKWVVQGAVDIDIGANPSAEG 60
           MLVYQDLLT       GDELLSDSFPY+EI NG+LWEVEGKWVVQGAVD+DIGANPSAEG
Sbjct: 1   MLVYQDLLT-------GDELLSDSFPYKEIHNGILWEVEGKWVVQGAVDVDIGANPSAEG 60

Query: 61  ADEDEGVDDQAVKVVDIVDTFRLQEQPPFDKKQFITYMKRYIKLLTPKLDEEKQELFKKH 120
           ADEDEGVDDQAVKVVDIVDTFRLQEQP FDKKQF+TYMKR+IKLLTPKLDEEKQE FKK+
Sbjct: 61  ADEDEGVDDQAVKVVDIVDTFRLQEQPAFDKKQFVTYMKRFIKLLTPKLDEEKQESFKKN 120

Query: 121 IPDATKFLISKINDLQFFVGEGMHDDGTMVFAYYKEGATDPTFIYIAYGLKEVKC 176
           I  ATKFL+SK++DLQFFVGE MHDDG++VFAYY+ GATDPTF+Y AY LKEVKC
Sbjct: 121 IEGATKFLLSKLSDLQFFVGESMHDDGSLVFAYYRGGATDPTFLYFAYALKEVKC 168

[Close]
BLAST of Lsi06G000980 vs. ExPASy Swiss-Prot
Match: P35681 (Translationally-controlled tumor protein homolog OS=Oryza sativa subsp. japonica OX=39947 GN=TCTP PE=1 SV=1)

HSP 1 Score: 282.7 bits (722), Expect = 2.8e-75
Identity = 137/175 (78.29%), Postives = 154/175 (88.00%), Query Frame = 0 

Query: 1   MLVYQDLLTDFLNELSGDELLSDSFPYEEIENGMLWEVEGKWVVQGAVDIDIGANPSAEG 60
           MLVYQDLLT       GDELLSDSFPY EIENG+LWEV+GKWVVQGA+D+DIGANPSAEG
Sbjct: 1   MLVYQDLLT-------GDELLSDSFPYREIENGILWEVDGKWVVQGAIDVDIGANPSAEG 60

Query: 61  ADEDEGVDDQAVKVVDIVDTFRLQEQPPFDKKQFITYMKRYIKLLTPKLDEEKQELFKKH 120
             +DEGVDDQAVKVVDIVDTFRLQEQPPFDKKQF+T+MKRYIK L+ KLD EKQE FKK+
Sbjct: 61  GGDDEGVDDQAVKVVDIVDTFRLQEQPPFDKKQFVTFMKRYIKNLSAKLDAEKQEEFKKN 120

Query: 121 IPDATKFLISKINDLQFFVGEGMHDDGTMVFAYYKEGATDPTFIYIAYGLKEVKC 176
           I  ATK+L+ K+ DLQFFVGE MHDDG +VFAYYK+GATDPTF+Y ++GLKEVKC
Sbjct: 121 IEGATKYLLGKLKDLQFFVGESMHDDGGLVFAYYKDGATDPTFLYFSHGLKEVKC 168

[Close]
BLAST of Lsi06G000980 vs. ExPASy Swiss-Prot
Match: P43349 (Translationally-controlled tumor protein homolog OS=Solanum tuberosum OX=4113 GN=TCTP PE=2 SV=2)

HSP 1 Score: 280.0 bits (715), Expect = 1.8e-74
Identity = 136/175 (77.71%), Postives = 153/175 (87.43%), Query Frame = 0 

Query: 1   MLVYQDLLTDFLNELSGDELLSDSFPYEEIENGMLWEVEGKWVVQGAVDIDIGANPSAEG 60
           MLVYQDLLT       GDELLSDSFPY+EI+NGMLWEV+GKWVVQGAVD++IGANPSAEG
Sbjct: 1   MLVYQDLLT-------GDELLSDSFPYKEIQNGMLWEVQGKWVVQGAVDVNIGANPSAEG 60

Query: 61  ADEDEGVDDQAVKVVDIVDTFRLQEQPPFDKKQFITYMKRYIKLLTPKLDEEKQELFKKH 120
             EDEGVDDQAVKVVDIVDTFRLQEQP FDKKQF+TY+KRYIK LTPKL+ E QE FKK+
Sbjct: 61  GGEDEGVDDQAVKVVDIVDTFRLQEQPAFDKKQFVTYIKRYIKNLTPKLEGEAQEAFKKN 120

Query: 121 IPDATKFLISKINDLQFFVGEGMHDDGTMVFAYYKEGATDPTFIYIAYGLKEVKC 176
           I  ATKFL+SK+ D QFFVGEGMHDD  +VFAYYK+G+ DPTF+Y+A GLKE+KC
Sbjct: 121 IESATKFLLSKLKDFQFFVGEGMHDDSALVFAYYKDGSADPTFLYLAPGLKEIKC 168

[Close]
BLAST of Lsi06G000980 vs. ExPASy Swiss-Prot
Match: Q944T2 (Translationally-controlled tumor protein homolog OS=Glycine max OX=3847 GN=TCTP PE=2 SV=1)

HSP 1 Score: 277.7 bits (709), Expect = 9.0e-74
Identity = 138/175 (78.86%), Postives = 150/175 (85.71%), Query Frame = 0 

Query: 1   MLVYQDLLTDFLNELSGDELLSDSFPYEEIENGMLWEVEGKWVVQGAVDIDIGANPSAEG 60
           MLVYQDLLT       GDELLSDSF Y+EIENGMLWEVEGKWVV+GAVD+DIGANPSAEG
Sbjct: 1   MLVYQDLLT-------GDELLSDSFRYKEIENGMLWEVEGKWVVKGAVDVDIGANPSAEG 60

Query: 61  ADEDEGVDDQAVKVVDIVDTFRLQEQPPFDKKQFITYMKRYIKLLTPKLDEEKQELFKKH 120
             EDEGVDD AVKVVDIVDTFRLQEQP FDKKQF+T+MKR+IK LTPKLD E+QELFKKH
Sbjct: 61  GGEDEGVDDAAVKVVDIVDTFRLQEQPAFDKKQFVTFMKRFIKNLTPKLDAEQQELFKKH 120

Query: 121 IPDATKFLISKINDLQFFVGEGMHDDGTMVFAYYKEGATDPTFIYIAYGLKEVKC 176
           I  ATK+L+SKI D QFFVGE M DD  +VFAYYK+GA DPTF+Y AY LKEVKC
Sbjct: 121 IEGATKYLLSKIKDFQFFVGESMGDDACLVFAYYKDGAADPTFLYFAYALKEVKC 168

[Close]
BLAST of Lsi06G000980 vs. ExPASy TrEMBL
Match: A0A5D3CG94 (Translationally-controlled tumor protein-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G004100 PE=3 SV=1)

HSP 1 Score: 327.8 bits (839), Expect = 2.8e-86
Identity = 162/175 (92.57%), Postives = 167/175 (95.43%), Query Frame = 0 

Query: 1   MLVYQDLLTDFLNELSGDELLSDSFPYEEIENGMLWEVEGKWVVQGAVDIDIGANPSAEG 60
           ML+YQDLLT       GDELLSDSFPY EIENGMLWEVEGKWVVQGA+D+DIGANPSAEG
Sbjct: 1   MLLYQDLLT-------GDELLSDSFPYNEIENGMLWEVEGKWVVQGAIDVDIGANPSAEG 60

Query: 61  ADEDEGVDDQAVKVVDIVDTFRLQEQPPFDKKQFITYMKRYIKLLTPKLDEEKQELFKKH 120
           ADEDEGVDDQAVKVVDIVDTFRLQEQPPFDKKQFITYMKRYIKLLTPKLDEEKQELFKK+
Sbjct: 61  ADEDEGVDDQAVKVVDIVDTFRLQEQPPFDKKQFITYMKRYIKLLTPKLDEEKQELFKKY 120

Query: 121 IPDATKFLISKINDLQFFVGEGMHDDGTMVFAYYKEGATDPTFIYIAYGLKEVKC 176
           IP+ATKFLISKINDLQFFVGEGMHDDGTMVFAYYKEGATDPTFIYIAYGLKEVKC
Sbjct: 121 IPEATKFLISKINDLQFFVGEGMHDDGTMVFAYYKEGATDPTFIYIAYGLKEVKC 168

[Close]
BLAST of Lsi06G000980 vs. ExPASy TrEMBL
Match: A0A1S3BQL7 (translationally-controlled tumor protein homolog OS=Cucumis melo OX=3656 GN=LOC103492149 PE=3 SV=1)

HSP 1 Score: 327.8 bits (839), Expect = 2.8e-86
Identity = 162/175 (92.57%), Postives = 167/175 (95.43%), Query Frame = 0 

Query: 1   MLVYQDLLTDFLNELSGDELLSDSFPYEEIENGMLWEVEGKWVVQGAVDIDIGANPSAEG 60
           ML+YQDLLT       GDELLSDSFPY EIENGMLWEVEGKWVVQGA+D+DIGANPSAEG
Sbjct: 1   MLLYQDLLT-------GDELLSDSFPYNEIENGMLWEVEGKWVVQGAIDVDIGANPSAEG 60

Query: 61  ADEDEGVDDQAVKVVDIVDTFRLQEQPPFDKKQFITYMKRYIKLLTPKLDEEKQELFKKH 120
           ADEDEGVDDQAVKVVDIVDTFRLQEQPPFDKKQFITYMKRYIKLLTPKLDEEKQELFKK+
Sbjct: 61  ADEDEGVDDQAVKVVDIVDTFRLQEQPPFDKKQFITYMKRYIKLLTPKLDEEKQELFKKY 120

Query: 121 IPDATKFLISKINDLQFFVGEGMHDDGTMVFAYYKEGATDPTFIYIAYGLKEVKC 176
           IP+ATKFLISKINDLQFFVGEGMHDDGTMVFAYYKEGATDPTFIYIAYGLKEVKC
Sbjct: 121 IPEATKFLISKINDLQFFVGEGMHDDGTMVFAYYKEGATDPTFIYIAYGLKEVKC 168

[Close]
BLAST of Lsi06G000980 vs. ExPASy TrEMBL
Match: A0A0A0LYG1 (TCTP domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G569310 PE=3 SV=1)

HSP 1 Score: 323.9 bits (829), Expect = 4.0e-85
Identity = 160/175 (91.43%), Postives = 166/175 (94.86%), Query Frame = 0 

Query: 1   MLVYQDLLTDFLNELSGDELLSDSFPYEEIENGMLWEVEGKWVVQGAVDIDIGANPSAEG 60
           ML+YQDLLT       GDELLSDSFPY EIENGMLWEVEGKWVVQGA+D+DIGANPSAEG
Sbjct: 1   MLLYQDLLT-------GDELLSDSFPYNEIENGMLWEVEGKWVVQGAIDVDIGANPSAEG 60

Query: 61  ADEDEGVDDQAVKVVDIVDTFRLQEQPPFDKKQFITYMKRYIKLLTPKLDEEKQELFKKH 120
           ADEDEGVDDQAVKVVDIVDTFRLQEQP FDKKQFITYMKRYIKLLTPKLDEEKQELF+KH
Sbjct: 61  ADEDEGVDDQAVKVVDIVDTFRLQEQPSFDKKQFITYMKRYIKLLTPKLDEEKQELFRKH 120

Query: 121 IPDATKFLISKINDLQFFVGEGMHDDGTMVFAYYKEGATDPTFIYIAYGLKEVKC 176
           IP+ATKFLISKI+DLQFFVGEGMHDDGTMVFAYYKEGATDPTFIYIAYGLKEVKC
Sbjct: 121 IPEATKFLISKIDDLQFFVGEGMHDDGTMVFAYYKEGATDPTFIYIAYGLKEVKC 168

[Close]
BLAST of Lsi06G000980 vs. ExPASy TrEMBL
Match: A0A6J1C579 (translationally-controlled tumor protein homolog OS=Momordica charantia OX=3673 GN=LOC111007510 PE=3 SV=1)

HSP 1 Score: 320.1 bits (819), Expect = 5.8e-84
Identity = 158/175 (90.29%), Postives = 165/175 (94.29%), Query Frame = 0 

Query: 1   MLVYQDLLTDFLNELSGDELLSDSFPYEEIENGMLWEVEGKWVVQGAVDIDIGANPSAEG 60
           MLVYQDLLT       GDELLSDSFPY+EIENG+LWEVEGKWVVQGAVD+DIGANPSAEG
Sbjct: 1   MLVYQDLLT-------GDELLSDSFPYKEIENGILWEVEGKWVVQGAVDVDIGANPSAEG 60

Query: 61  ADEDEGVDDQAVKVVDIVDTFRLQEQPPFDKKQFITYMKRYIKLLTPKLDEEKQELFKKH 120
           AD DEGVDDQAVKVVDIVDTFRLQEQPPFDKKQF+TYMKRYIKLLTPKLD EKQELFKKH
Sbjct: 61  ADADEGVDDQAVKVVDIVDTFRLQEQPPFDKKQFVTYMKRYIKLLTPKLDAEKQELFKKH 120

Query: 121 IPDATKFLISKINDLQFFVGEGMHDDGTMVFAYYKEGATDPTFIYIAYGLKEVKC 176
           I DATK+L+SKI+DLQFFVGEGMHDDGTMVFAYYKEGATDPTFIYIAYGLKEVKC
Sbjct: 121 IQDATKYLLSKISDLQFFVGEGMHDDGTMVFAYYKEGATDPTFIYIAYGLKEVKC 168

[Close]
BLAST of Lsi06G000980 vs. ExPASy TrEMBL
Match: A0A151U4Q6 (Translationally-controlled tumor protein isogeny OS=Cajanus cajan OX=3821 GN=KK1_006983 PE=3 SV=1)

HSP 1 Score: 307.4 bits (786), Expect = 3.9e-80
Identity = 150/175 (85.71%), Postives = 162/175 (92.57%), Query Frame = 0 

Query: 1   MLVYQDLLTDFLNELSGDELLSDSFPYEEIENGMLWEVEGKWVVQGAVDIDIGANPSAEG 60
           MLVYQDLLT       GDELLSDSFPY+EIENGMLWEV+GKWVVQGAV++DIGANPSAEG
Sbjct: 1   MLVYQDLLT-------GDELLSDSFPYKEIENGMLWEVDGKWVVQGAVNVDIGANPSAEG 60

Query: 61  ADEDEGVDDQAVKVVDIVDTFRLQEQPPFDKKQFITYMKRYIKLLTPKLDEEKQELFKKH 120
            DEDEGVDDQAVKVVDIVDTFRLQEQPPFDKKQFITYMKRYIKLLTPKL+ EKQELFKKH
Sbjct: 61  GDEDEGVDDQAVKVVDIVDTFRLQEQPPFDKKQFITYMKRYIKLLTPKLEAEKQELFKKH 120

Query: 121 IPDATKFLISKINDLQFFVGEGMHDDGTMVFAYYKEGATDPTFIYIAYGLKEVKC 176
           I  ATKFL+SK++DLQFFVGE MHDDG++VFAYYKEGAT+PTFIY AYGLKE+KC
Sbjct: 121 IEGATKFLLSKLSDLQFFVGESMHDDGSLVFAYYKEGATEPTFIYFAYGLKEIKC 168

[Close]
BLAST of Lsi06G000980 vs. NCBI nr
Match: XP_008450611.1 (PREDICTED: translationally-controlled tumor protein homolog [Cucumis melo] >KAA0050911.1 translationally-controlled tumor protein-like protein [Cucumis melo var. makuwa] >TYK10262.1 translationally-controlled tumor protein-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 327.8 bits (839), Expect = 5.8e-86
Identity = 162/175 (92.57%), Postives = 167/175 (95.43%), Query Frame = 0 

Query: 1   MLVYQDLLTDFLNELSGDELLSDSFPYEEIENGMLWEVEGKWVVQGAVDIDIGANPSAEG 60
           ML+YQDLLT       GDELLSDSFPY EIENGMLWEVEGKWVVQGA+D+DIGANPSAEG
Sbjct: 1   MLLYQDLLT-------GDELLSDSFPYNEIENGMLWEVEGKWVVQGAIDVDIGANPSAEG 60

Query: 61  ADEDEGVDDQAVKVVDIVDTFRLQEQPPFDKKQFITYMKRYIKLLTPKLDEEKQELFKKH 120
           ADEDEGVDDQAVKVVDIVDTFRLQEQPPFDKKQFITYMKRYIKLLTPKLDEEKQELFKK+
Sbjct: 61  ADEDEGVDDQAVKVVDIVDTFRLQEQPPFDKKQFITYMKRYIKLLTPKLDEEKQELFKKY 120

Query: 121 IPDATKFLISKINDLQFFVGEGMHDDGTMVFAYYKEGATDPTFIYIAYGLKEVKC 176
           IP+ATKFLISKINDLQFFVGEGMHDDGTMVFAYYKEGATDPTFIYIAYGLKEVKC
Sbjct: 121 IPEATKFLISKINDLQFFVGEGMHDDGTMVFAYYKEGATDPTFIYIAYGLKEVKC 168

[Close]
BLAST of Lsi06G000980 vs. NCBI nr
Match: XP_038880105.1 (translationally-controlled tumor protein homolog [Benincasa hispida])

HSP 1 Score: 324.3 bits (830), Expect = 6.4e-85
Identity = 160/175 (91.43%), Postives = 166/175 (94.86%), Query Frame = 0 

Query: 1   MLVYQDLLTDFLNELSGDELLSDSFPYEEIENGMLWEVEGKWVVQGAVDIDIGANPSAEG 60
           ML+YQDLLT       GDELLSDSFPY EIENGMLWEVEGKWVVQGA+D+DIGANPSAEG
Sbjct: 1   MLLYQDLLT-------GDELLSDSFPYNEIENGMLWEVEGKWVVQGAIDVDIGANPSAEG 60

Query: 61  ADEDEGVDDQAVKVVDIVDTFRLQEQPPFDKKQFITYMKRYIKLLTPKLDEEKQELFKKH 120
           ADEDEGVDDQAVKVVDIVDTFRLQEQPPFDKKQFITYMKRYIKLLTPKL+EEK ELFKKH
Sbjct: 61  ADEDEGVDDQAVKVVDIVDTFRLQEQPPFDKKQFITYMKRYIKLLTPKLEEEKLELFKKH 120

Query: 121 IPDATKFLISKINDLQFFVGEGMHDDGTMVFAYYKEGATDPTFIYIAYGLKEVKC 176
           IP+ATKFLISKINDLQFFVGEGMHDDG+MVFAYYKEGATDPTFIYIAYGLKEVKC
Sbjct: 121 IPEATKFLISKINDLQFFVGEGMHDDGSMVFAYYKEGATDPTFIYIAYGLKEVKC 168

[Close]
BLAST of Lsi06G000980 vs. NCBI nr
Match: XP_004135602.1 (translationally-controlled tumor protein homolog [Cucumis sativus] >KGN66054.1 hypothetical protein Csa_007632 [Cucumis sativus])

HSP 1 Score: 323.9 bits (829), Expect = 8.3e-85
Identity = 160/175 (91.43%), Postives = 166/175 (94.86%), Query Frame = 0 

Query: 1   MLVYQDLLTDFLNELSGDELLSDSFPYEEIENGMLWEVEGKWVVQGAVDIDIGANPSAEG 60
           ML+YQDLLT       GDELLSDSFPY EIENGMLWEVEGKWVVQGA+D+DIGANPSAEG
Sbjct: 1   MLLYQDLLT-------GDELLSDSFPYNEIENGMLWEVEGKWVVQGAIDVDIGANPSAEG 60

Query: 61  ADEDEGVDDQAVKVVDIVDTFRLQEQPPFDKKQFITYMKRYIKLLTPKLDEEKQELFKKH 120
           ADEDEGVDDQAVKVVDIVDTFRLQEQP FDKKQFITYMKRYIKLLTPKLDEEKQELF+KH
Sbjct: 61  ADEDEGVDDQAVKVVDIVDTFRLQEQPSFDKKQFITYMKRYIKLLTPKLDEEKQELFRKH 120

Query: 121 IPDATKFLISKINDLQFFVGEGMHDDGTMVFAYYKEGATDPTFIYIAYGLKEVKC 176
           IP+ATKFLISKI+DLQFFVGEGMHDDGTMVFAYYKEGATDPTFIYIAYGLKEVKC
Sbjct: 121 IPEATKFLISKIDDLQFFVGEGMHDDGTMVFAYYKEGATDPTFIYIAYGLKEVKC 168

[Close]
BLAST of Lsi06G000980 vs. NCBI nr
Match: XP_022135588.1 (translationally-controlled tumor protein homolog [Momordica charantia])

HSP 1 Score: 320.1 bits (819), Expect = 1.2e-83
Identity = 158/175 (90.29%), Postives = 165/175 (94.29%), Query Frame = 0 

Query: 1   MLVYQDLLTDFLNELSGDELLSDSFPYEEIENGMLWEVEGKWVVQGAVDIDIGANPSAEG 60
           MLVYQDLLT       GDELLSDSFPY+EIENG+LWEVEGKWVVQGAVD+DIGANPSAEG
Sbjct: 1   MLVYQDLLT-------GDELLSDSFPYKEIENGILWEVEGKWVVQGAVDVDIGANPSAEG 60

Query: 61  ADEDEGVDDQAVKVVDIVDTFRLQEQPPFDKKQFITYMKRYIKLLTPKLDEEKQELFKKH 120
           AD DEGVDDQAVKVVDIVDTFRLQEQPPFDKKQF+TYMKRYIKLLTPKLD EKQELFKKH
Sbjct: 61  ADADEGVDDQAVKVVDIVDTFRLQEQPPFDKKQFVTYMKRYIKLLTPKLDAEKQELFKKH 120

Query: 121 IPDATKFLISKINDLQFFVGEGMHDDGTMVFAYYKEGATDPTFIYIAYGLKEVKC 176
           I DATK+L+SKI+DLQFFVGEGMHDDGTMVFAYYKEGATDPTFIYIAYGLKEVKC
Sbjct: 121 IQDATKYLLSKISDLQFFVGEGMHDDGTMVFAYYKEGATDPTFIYIAYGLKEVKC 168

[Close]
BLAST of Lsi06G000980 vs. NCBI nr
Match: XP_023531839.1 (translationally-controlled tumor protein homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 308.9 bits (790), Expect = 2.8e-80
Identity = 150/175 (85.71%), Postives = 163/175 (93.14%), Query Frame = 0 

Query: 1   MLVYQDLLTDFLNELSGDELLSDSFPYEEIENGMLWEVEGKWVVQGAVDIDIGANPSAEG 60
           M+VYQD       +L+GDELLSDSFPY+EIEN MLWEVEGKW+VQGAVD+DIGANPSAEG
Sbjct: 1   MIVYQD-------QLTGDELLSDSFPYKEIENEMLWEVEGKWIVQGAVDVDIGANPSAEG 60

Query: 61  ADEDEGVDDQAVKVVDIVDTFRLQEQPPFDKKQFITYMKRYIKLLTPKLDEEKQELFKKH 120
            +EDE VD++AVKVVDIVDTFRLQEQPPFDKKQFITYMKRYIKLLTPKLDEEKQE+FKKH
Sbjct: 61  GEEDECVDEEAVKVVDIVDTFRLQEQPPFDKKQFITYMKRYIKLLTPKLDEEKQEVFKKH 120

Query: 121 IPDATKFLISKINDLQFFVGEGMHDDGTMVFAYYKEGATDPTFIYIAYGLKEVKC 176
           IP+ATKFL+SKINDLQFFVGEGMHDD  +VFAYYKEGATDPTFIYIAYGLKEVKC
Sbjct: 121 IPEATKFLLSKINDLQFFVGEGMHDDAALVFAYYKEGATDPTFIYIAYGLKEVKC 168

[Close]
BLAST of Lsi06G000980 vs. TAIR 10
Match: AT3G05540.1 (Methionine sulfoxide reductase (MSS4-like) family protein )

HSP 1 Score: 271.9 bits (694), Expect = 3.5e-73
Identity = 134/176 (76.14%), Postives = 152/176 (86.36%), Query Frame = 0 

Query: 1   MLVYQDLLTDFLNELSGDELLSDSFPYEEIENGMLWEVEGKWVVQGAVDIDIGANPSAEG 60
           MLVYQD+LT       GDELLSDSFPY+EIENGMLWEVEGKWVV+GA+D DIGANP  EG
Sbjct: 1   MLVYQDILT-------GDELLSDSFPYKEIENGMLWEVEGKWVVKGAMDFDIGANPGEEG 60

Query: 61  ADEDEGVDDQAVKVVDIVDTFRLQEQPPFDKKQFITYMKRYIKLLTPKLDEEKQELFKKH 120
             EDEGVDDQAVKVVDI+DTFRLQEQP FDKKQF+ +MKRYIK L+PKLD E QELFKKH
Sbjct: 61  G-EDEGVDDQAVKVVDIIDTFRLQEQPSFDKKQFVMFMKRYIKQLSPKLDSENQELFKKH 120

Query: 121 IPDATKFLISKINDLQFFVGEGMH-DDGTMVFAYYKEGATDPTFIYIAYGLKEVKC 176
           I  ATKFL+SK+ D QFFVGE M  ++G++VFAYY+EGATDPTF+Y+AYGLKE+KC
Sbjct: 121 IESATKFLMSKLKDFQFFVGESMEGEEGSLVFAYYREGATDPTFLYLAYGLKEIKC 168

[Close]
BLAST of Lsi06G000980 vs. TAIR 10
Match: AT3G16640.1 (translationally controlled tumor protein )

HSP 1 Score: 264.6 bits (675), Expect = 5.6e-71
Identity = 130/175 (74.29%), Postives = 147/175 (84.00%), Query Frame = 0 

Query: 1   MLVYQDLLTDFLNELSGDELLSDSFPYEEIENGMLWEVEGKWVVQGAVDIDIGANPSAEG 60
           MLVYQDLLT       GDELLSDSFPY+EIENG+LWEVEGKWV  GAVD++IGANPSAE 
Sbjct: 1   MLVYQDLLT-------GDELLSDSFPYKEIENGILWEVEGKWVTVGAVDVNIGANPSAEE 60

Query: 61  ADEDEGVDDQAVKVVDIVDTFRLQEQPPFDKKQFITYMKRYIKLLTPKLDEEKQELFKKH 120
             EDEGVDD   KVVDIVDTFRLQEQP +DKK FI Y+K+YIKLLTPKL EE Q +FKK 
Sbjct: 61  GGEDEGVDDSTQKVVDIVDTFRLQEQPTYDKKGFIAYIKKYIKLLTPKLSEEDQAVFKKG 120

Query: 121 IPDATKFLISKINDLQFFVGEGMHDDGTMVFAYYKEGATDPTFIYIAYGLKEVKC 176
           I  ATKFL+ +++D QFFVGEGMHDD T+VFAYYKEG+T+PTF+Y A+GLKEVKC
Sbjct: 121 IEGATKFLLPRLSDFQFFVGEGMHDDSTLVFAYYKEGSTNPTFLYFAHGLKEVKC 168

The following BLAST results are available for this feature:
BLAST of Lsi06G000980 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q5J9071.1e-7982.29Translationally-controlled tumor protein homolog OS=Elaeis guineensis var. tener... [more]
Q9ZSW91.1e-7983.43Translationally-controlled tumor protein homolog OS=Hevea brasiliensis OX=3981 G... [more]
P356812.8e-7578.29Translationally-controlled tumor protein homolog OS=Oryza sativa subsp. japonica... [more]
P433491.8e-7477.71Translationally-controlled tumor protein homolog OS=Solanum tuberosum OX=4113 GN... [more]
Q944T29.0e-7478.86Translationally-controlled tumor protein homolog OS=Glycine max OX=3847 GN=TCTP ... [more]
BLAST of Lsi06G000980 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3CG942.8e-8692.57Translationally-controlled tumor protein-like protein OS=Cucumis melo var. makuw... [more]
A0A1S3BQL72.8e-8692.57translationally-controlled tumor protein homolog OS=Cucumis melo OX=3656 GN=LOC1... [more]
A0A0A0LYG14.0e-8591.43TCTP domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G569310 PE=3 S... [more]
A0A6J1C5795.8e-8490.29translationally-controlled tumor protein homolog OS=Momordica charantia OX=3673 ... [more]
A0A151U4Q63.9e-8085.71Translationally-controlled tumor protein isogeny OS=Cajanus cajan OX=3821 GN=KK1... [more]
BLAST of Lsi06G000980 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008450611.15.8e-8692.57PREDICTED: translationally-controlled tumor protein homolog [Cucumis melo] >KAA0... [more]
XP_038880105.16.4e-8591.43translationally-controlled tumor protein homolog [Benincasa hispida][more]
XP_004135602.18.3e-8591.43translationally-controlled tumor protein homolog [Cucumis sativus] >KGN66054.1 h... [more]
XP_022135588.11.2e-8390.29translationally-controlled tumor protein homolog [Momordica charantia][more]
XP_023531839.12.8e-8085.71translationally-controlled tumor protein homolog [Cucurbita pepo subsp. pepo][more]
BLAST of Lsi06G000980 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G05540.13.5e-7376.14Methionine sulfoxide reductase (MSS4-like) family protein [more]
AT3G16640.15.6e-7174.29translationally controlled tumor protein [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR018105Translationally controlled tumour proteinPRINTSPR01653TCTPROTEINcoord: 67..86
score: 60.36
coord: 8..28
score: 41.16
coord: 53..64
score: 68.45
IPR018105Translationally controlled tumour proteinPFAMPF00838TCTPcoord: 1..171
e-value: 9.9E-55
score: 185.3
IPR018105Translationally controlled tumour proteinPANTHERPTHR11991TRANSLATIONALLY CONTROLLED TUMOR PROTEIN-RELATEDcoord: 1..175
IPR011323Mss4/translationally controlled tumour-associated TCTPGENE3D2.170.150.10Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain Acoord: 1..175
e-value: 1.3E-54
score: 186.9
NoneNo IPR availablePANTHERPTHR11991:SF11TRANSLATIONALLY-CONTROLLED TUMOR PROTEIN HOMOLOGcoord: 1..175
IPR018103Translationally controlled tumour protein, conserved sitePROSITEPS01002TCTP_1coord: 52..62
IPR018103Translationally controlled tumour protein, conserved sitePROSITEPS01003TCTP_2coord: 132..154
IPR034737Translationally controlled tumour protein (TCTP) domainPROSITEPS51797TCTP_3coord: 1..175
score: 57.345131
IPR011057Mss4-like superfamilySUPERFAMILY51316Mss4-likecoord: 1..175

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi06G000980.1Lsi06G000980.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005737 cytoplasm
molecular_function GO:0005509 calcium ion binding