Lsi06G000930 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi06G000930
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUnknown protein
Locationchr06: 925775 .. 929226 (+)
RNA-Seq ExpressionLsi06G000930
SyntenyLsi06G000930
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTCTGTTTTTTTTTTTTTTTTTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCAGTTTATGGTGTTTGTTAAGTGATTAGTATGTTTGAGAATCCAGATGGTTGTTTTGTACGGTAGTTACTTTTTACAATATGTATGTTGCTCTTAATAATCTTTTATGCCAGTTTGTTTTCTTGATTAATGAATCATTGTGACTGCATAATAACTAACATGACAGAAAGAGTGTACGAAAAGTGTTTAGATAAATAAGTAGAATGTGAATTTATTATTTGCTGATGGAAAAATACTTTGGTGTATCTCGGGGAGCACTTATTTTTGTGCATCCTACCAAACTGTCCTATCATAATATGACATGTGGCAAACTATTTTTATTTATTTTTTGAAATAGTTTAATTATTTCTTTGGCGTGAGTGATGGAAGGAGAAGCATAGAGAAGATGCATCCAAGTATTACCCATGCTGATATACTTCAATACGTAAACTATCTTCACAAAGTATATAGTCTATTATTGATAAGCTTCTAATGCTTGTGTTGTGATTGAAGAATATCACTAATAAGAGTCCATTATTGATAGACTTCCATCACAAAATATGTATGTCTATCACTTGTGAAGCACAAACGTGGACACAAGTACGGGATATGGATACAATAGGATACGACAATACATCAATTTCTAAAAGATTAGGATACTCATATGCTGAGGATACATTTTTTTAATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAAAAGATACGCCAAATTGAGTGTTAGATGAGTATTTGATAAGGATCGATATCTGATACGAATTTAGTCCATCATCTCTAATAGACTTCTAATACTTGTGTTGTTTAGTTATTTACTTTGCAGCCCTTTGGCTATTTTCAGCCTTTAGAAACCACTTTCATCCCAAGCTTAGAAAATATTTGATTTGAATCTCTTAACTAACAAAATTTCCTAAGGTCAGAAATTGACATGTCAATTTTAAAAATTAATAGAACAATAGTAATAATTAAACCAATTAAACCAAAATAATTAAAAAATGGTAAAATACTTTTTTGGTCCATAAGTTTTGGGTCTATCTATTTACTCTCTAAATTTTAAAAAGTTTTGAATTTAGTTTCGATTTAGTCCCTAAATTTCAAAATATTATAATTTTAACCTTAAGATTTAATTTTTATTTCAATTCTGTCCCTAAATTTCATAATTTTACATTTTTAACCTCAATTTTTCACTAAATACTCATTTTTAATCTATAGTCTTAGACTATCTTAATAAATTTAAAAAAAATTAAAAATATATATAATTAATTAAGTTTCACTATTTTTCATCACTTTTAAAATTAAATTTAAAATTTCACTTCACAATACTTTTAATTAACTAATAGACATTGACGCCAATAATTAGAAATGAGTATTTAATAAAAAAAATTGAGGTAAAAATATAAAATTTTAAAAACTAGGAACCAAATTAAAACAAAAATCAAATATCAAGAATAAAATTGTAACGTTCTAAAACTTAGGGACTAAATTGAAACCAAAATGTGTAACATTTTAAAACTCGAGGATCAAATAAAAACTAACCCAAAACCTAGGAACAAAAAAAGTTACCCTATTATTACTATTATTATTATCAACTATCTTAATTTTAAAAATTTGCCACACCAGCTTTTATTACCTATGCGACAGATTCCACTACCACTAATACAAGGGACTTTGAAACTCAAGATCAGATTAACAAAAATAACAAACATCATCTTCCAAGACCAAAAAAGAAAACAAAACCCATAAAAATTATAGTCAAAACATGCCCTAATACACTTTTTTTCACCAATGTTTACTTTTAATGTATCAAAATTATAATAAAGCTCAAGAGAGATTGGTGAAGCACAATTGGTTTGTAGCTATCTAAAATGAACAGAACAGAAAATGGACATCACACAATCTAGAAGAAGAAACTCTATGAAGTCCCGCTGAATTCAATCAAATTCATAATCAACAATATTATGGCAAAACCGTAAGAAAAGATGAAACGACTGACATGCAACTAAAATCTAGCAAAATTTGGATATTGAATTCAAAATAACACACTGGCATTGAATTAGCTTGGAAAAGTAAGATCAAATCAAACCCTATATCCCCTGCTGTTTCTCTTTCCTCTAGCTCTCTCAAACTTCCTTCCCTTGGACCTCACATATGGCTTGGAATGGCTGTGTGGTACACCAGGCGCAGGACCGAAATGCTTCACTGCCTCCCGAGAGTTCTTAGGACCTCTAAGAAGAACCTGCAGATGGAGCCAAGGGATGATTCAAACCCCTAAAACGGTACTTGAGAGTAATTGATAATGCGGTCACAATCATGACCAATGTGAAGCATCAGGTTAAAAATGCAAATGAACTAAATAACTTGAACATGAAACAGTCGATTCAGCAAATTCTAAACAAAAATGAAAACATTCATACCGTGTTTTGACCCAGAGGAGCCCTCAAAGCAAGCTGGTCAAAGGTCAGACATTCCCCGCCTGCCTTTTCGATCCTTGCCCTTGCTGTCTCGGTAAACCTCAGAGCTGCAACTTTCAATGCTGGGACTTCAAAGACACGAATATCATCGGTAATAGTCCCAACAACGACAGCAATCTTACTTTCCTATTACATCACAAACGAATGTACAAAGTTTCAGATATCTCATATGTGCACAACCATACAAGAAAAAGAAACCGAAATAATATTAGAATACTACACGATCTAACCAACCTTTCCTTTCGTGAACCGGATAAGCCTAGAGAGTGA

mRNA sequence

ATGGTCTTTTATGCTCTCTCAAACTTCCTTCCCTTGGACCTCACATATGGCTTGGAATGGCTGTGTGGTACACCAGGCGCAGGACCGAAATGCTTCACTGCCTCCCGAGAGTTCTTAGGACCTCTAAGAAGAACCTGCAGATGGAGCCAAGGGATGATTCAAACCCCTAAAACGAGGAGCCCTCAAAGCAAGCTGGTCAAAGGTCAGACATTCCCCGCCTGCCTTTTCGATCCTTGCCCTTGCTGTCTCGGTAAACCTCAGAGCTGCAACTTTCAATGCTGGGACTTCAAAGACACGAATATCATCGGTAATAGTCCCAACAACGACAGCAATCTTACTTTCCTATTACATCACAAACGAATGTACAAAGTTTCAGATATCTCATATGTGCACAACCATACAAGAAAAAGAAACCGAAATAATATTAGAATACTACACGATCTAACCAACCTTTCCTTTCGTGAACCGGATAAGCCTAGAGAGTGA

Coding sequence (CDS)

ATGGTCTTTTATGCTCTCTCAAACTTCCTTCCCTTGGACCTCACATATGGCTTGGAATGGCTGTGTGGTACACCAGGCGCAGGACCGAAATGCTTCACTGCCTCCCGAGAGTTCTTAGGACCTCTAAGAAGAACCTGCAGATGGAGCCAAGGGATGATTCAAACCCCTAAAACGAGGAGCCCTCAAAGCAAGCTGGTCAAAGGTCAGACATTCCCCGCCTGCCTTTTCGATCCTTGCCCTTGCTGTCTCGGTAAACCTCAGAGCTGCAACTTTCAATGCTGGGACTTCAAAGACACGAATATCATCGGTAATAGTCCCAACAACGACAGCAATCTTACTTTCCTATTACATCACAAACGAATGTACAAAGTTTCAGATATCTCATATGTGCACAACCATACAAGAAAAAGAAACCGAAATAATATTAGAATACTACACGATCTAACCAACCTTTCCTTTCGTGAACCGGATAAGCCTAGAGAGTGA

Protein sequence

MVFYALSNFLPLDLTYGLEWLCGTPGAGPKCFTASREFLGPLRRTCRWSQGMIQTPKTRSPQSKLVKGQTFPACLFDPCPCCLGKPQSCNFQCWDFKDTNIIGNSPNNDSNLTFLLHHKRMYKVSDISYVHNHTRKRNRNNIRILHDLTNLSFREPDKPRE
Homology
[Close]
BLAST of Lsi06G000930 vs. ExPASy TrEMBL
Match: A0A293LWN6 (Uncharacterized protein (Fragment) OS=Ornithodoros erraticus OX=265619 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 1.5e-06
Identity = 31/65 (47.69%), Postives = 38/65 (58.46%), Query Frame = 0 

Query: 5  ALSNFLPLDLTYGLEWLCGTPGAGPKCFTASREFLGPLRRTCRWSQGMIQTPKTRSPQSK 64
          A SN  PL+ TYGL WLCGTPGAGPKC  ASR  L P  RT    Q  I    T +  ++
Sbjct: 10 ARSNLRPLERTYGLVWLCGTPGAGPKCLHASRAVLRPWMRTVFEKQHSIMALLTYAGHNQ 69

Query: 65 LVKGQ 70
           ++ +
Sbjct: 70 YLRAK 74

[Close]
BLAST of Lsi06G000930 vs. ExPASy TrEMBL
Match: A0A444EIS6 (Uncharacterized protein OS=Ensete ventricosum OX=4639 GN=GW17_00026148 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 3.2e-04
Identity = 28/68 (41.18%), Postives = 44/68 (64.71%), Query Frame = 0 

Query: 59  RSPQSKLVKGQTFPACLFDPCPCCLGKPQSCNFQCWDFKDTNIIGNSPNNDSNLTFLLHH 118
           R P+SKL+K Q FP  L +P P CL KPQS + +  +  ++ I+G+SPN+ SNL  L+  
Sbjct: 14  RRPKSKLIKSQAFPTGLENPGPRCLRKPQSRHLERRNIVNSLIVGHSPNDHSNLIILVDL 73

Query: 119 KRMYKVSD 127
           K +  +++
Sbjct: 74  KSIRPIAN 81

[Close]
BLAST of Lsi06G000930 vs. NCBI nr
Match: RWW10319.1 (hypothetical protein GW17_00026148 [Ensete ventricosum])

HSP 1 Score: 55.1 bits (131), Expect = 6.6e-04
Identity = 28/68 (41.18%), Postives = 44/68 (64.71%), Query Frame = 0 

Query: 59  RSPQSKLVKGQTFPACLFDPCPCCLGKPQSCNFQCWDFKDTNIIGNSPNNDSNLTFLLHH 118
           R P+SKL+K Q FP  L +P P CL KPQS + +  +  ++ I+G+SPN+ SNL  L+  
Sbjct: 14  RRPKSKLIKSQAFPTGLENPGPRCLRKPQSRHLERRNIVNSLIVGHSPNDHSNLIILVDL 73

Query: 119 KRMYKVSD 127
           K +  +++
Sbjct: 74  KSIRPIAN 81

The following BLAST results are available for this feature:
BLAST of Lsi06G000930 vs.
Match NameE-valueIdentityDescription
BLAST of Lsi06G000930 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A293LWN61.5e-0647.69Uncharacterized protein (Fragment) OS=Ornithodoros erraticus OX=265619 PE=4 SV=1[more]
A0A444EIS63.2e-0441.18Uncharacterized protein OS=Ensete ventricosum OX=4639 GN=GW17_00026148 PE=4 SV=1[more]
BLAST of Lsi06G000930 vs. NCBI nr
Match NameE-valueIdentityDescription
RWW10319.16.6e-0441.18hypothetical protein GW17_00026148 [Ensete ventricosum][more]
BLAST of Lsi06G000930 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi06G000930.1Lsi06G000930.1mRNA