Lsi06G000840 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi06G000840
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Descriptioncalmodulin-binding protein 60 A-like
Locationchr06: 850716 .. 852167 (-)
RNA-Seq ExpressionLsi06G000840
SyntenyLsi06G000840
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTATGCCAATGATGAGATAAAATCTGAAAATGGTGATCCATTGAAAGTTGTAATTTGTGATTCCAACAACTGCAACAATGTCATCTCCATTGGTCAATTGTCATCTGCTCCAATTGAATTCTTCCTCCTTGATGGAGAGCTCAAAGAAATCATGAACTCGAGAAAAGGGAAACCGTCATCTTTGATCTCTGGTAATGATCGCAAACTTTACCTACAAGAGGGAGTTTGTTTGGTCAATGGTGTATTTGTCACTGACAATTCAAGCTGGACGATATCAAAGAAATTTTGTCTGGGAGTCAAAATTACTGATGAAAAAATATTGGGTGACTTTGGTGTGATCCAACGAGCAATTTCTCAACCATTTAAAGTTTTGGATGATCGAATGAAAGGTATAATTATTTCTCTATCCTCCCCTTACACACACCCGTTTCGTATTTACACAAAATGGCAAAATTTTTAGATAGTTGTGATAGACGGAAGTCTATTAAGGCTTATTAGTGATAGAAATGATAGAAGTCTATCACTGATAGATGTTCATAGAAGTCTATCAATGTCTATCACTGTTTTTTTTTTGCTATTTTTTGTAAATAGTTTAACATTTTTTCTATCTGGTGAAAACTTTTCTTTATATATAATGTAATAATTTTTTTTATAATTAATATTAATTAGGGAGTGAAAAACATCACCCTCCAAATTGGGACGATGAAGTATCAAGACTGGAAGGGATAGGTGGTACATATCAAAAAATCTTATCTTCATTAAAACCTCCAATAAATACTGTGGGTGATTTCTTGGAGGCTCATCGTCAAATGGGTGCTATTGCTCTGAAAAAGGTAATTTACAAAAAAAGAAAAAAAAAATTAATCTGTTTTTGTTAGGCGGTTTTGAAATATAGAAAAATGAACTAAAATATATATAAATATAGAAAAATTTCACTGTCTATCAGCGATAGACCACGATAGACTTCTATTACTGGGCAATAGACCGCAGTAGACTTTTGTCGCTTAATGATAGAAGTCAAATACAGTCTATCAACGATAGACAGTAAAATTTTTATATATTTATAAATAGTTTACTATTTTTTCTATTTATAATAATTTTCCTTTCTATTAACTATTTTAAGAGTAATATTTGGGTGTACATTTAAGGTTGTATCTATCATTTTCTCGCTCCAACCACACATGAGAAAAAACTCAAAAAAAAAAAAAGTTTGCTACATGGCAAACTTCGATAACTTGGTGAACTGCAAAAAGATGAGTGTGACCTAAAATGCACTACCAGTGTATTTAATCTCATTTTAAAAAAAATTAAGGAGTTGATTACTTTTCATATATATATGTAGATTCTAGGAATGACAAGGTCAGACAAGAAATGGAACAAGATCCTTAACCATGCAATGGAATGCGTTGTTGATGTTCCTATTAATTATGATCCAACCTTTCAGGTTTAA

mRNA sequence

ATGTATGCCAATGATGAGATAAAATCTGAAAATGGTGATCCATTGAAAGTTGTAATTTGTGATTCCAACAACTGCAACAATGTCATCTCCATTGGTCAATTGTCATCTGCTCCAATTGAATTCTTCCTCCTTGATGGAGAGCTCAAAGAAATCATGAACTCGAGAAAAGGGAAACCGTCATCTTTGATCTCTGGAATGACAAGGTCAGACAAGAAATGGAACAAGATCCTTAACCATGCAATGGAATGCGTTGTTGATGTTCCTATTAATTATGATCCAACCTTTCAGGTTTAA

Coding sequence (CDS)

ATGTATGCCAATGATGAGATAAAATCTGAAAATGGTGATCCATTGAAAGTTGTAATTTGTGATTCCAACAACTGCAACAATGTCATCTCCATTGGTCAATTGTCATCTGCTCCAATTGAATTCTTCCTCCTTGATGGAGAGCTCAAAGAAATCATGAACTCGAGAAAAGGGAAACCGTCATCTTTGATCTCTGGAATGACAAGGTCAGACAAGAAATGGAACAAGATCCTTAACCATGCAATGGAATGCGTTGTTGATGTTCCTATTAATTATGATCCAACCTTTCAGGTTTAA

Protein sequence

MYANDEIKSENGDPLKVVICDSNNCNNVISIGQLSSAPIEFFLLDGELKEIMNSRKGKPSSLISGMTRSDKKWNKILNHAMECVVDVPINYDPTFQV
Homology
[Close]
BLAST of Lsi06G000840 vs. ExPASy TrEMBL
Match: A0A5A7TEC6 (Calmodulin-binding protein 60 A-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold145G00120 PE=3 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 2.4e-10
Identity = 38/59 (64.41%), Postives = 43/59 (72.88%), Query Frame = 0 

Query: 1  MYANDEIKSENGDPLKVVICDSNNCNNVISIGQLSSAPIEFFLLDGELKEIMNSRKGKP 60
          MYAN EIKSENG+PLK+ I DS N N  +S  +LSSAP+E FL DGE KEI  S  GKP
Sbjct: 1  MYANKEIKSENGEPLKIGIFDSANLNVPVSTDKLSSAPVELFLEDGEHKEISKSDNGKP 59

[Close]
BLAST of Lsi06G000840 vs. ExPASy TrEMBL
Match: A0A1S3B5C3 (calmodulin-binding protein 60 A-like OS=Cucumis melo OX=3656 GN=LOC103486196 PE=3 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 2.4e-10
Identity = 38/59 (64.41%), Postives = 43/59 (72.88%), Query Frame = 0 

Query: 1   MYANDEIKSENGDPLKVVICDSNNCNNVISIGQLSSAPIEFFLLDGELKEIMNSRKGKP 60
           MYAN EIKSENG+PLK+ I DS N N  +S  +LSSAP+E FL DGE KEI  S  GKP
Sbjct: 119 MYANKEIKSENGEPLKIGIFDSANLNVPVSTDKLSSAPVELFLEDGEHKEISKSDNGKP 177

[Close]
BLAST of Lsi06G000840 vs. ExPASy TrEMBL
Match: A0A0A0KZ38 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G494210 PE=3 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 2.7e-06
Identity = 32/58 (55.17%), Postives = 39/58 (67.24%), Query Frame = 0 

Query: 1   MYANDEIKSENGDPLKVVICDSNNCNNVISIGQLSSAPIEFFLLDGELKEIMNSRKGK 59
           MYAN EIKSE+G+ LK+ I ++ N    +S   LSSAP+E FL DGE KEI  S  GK
Sbjct: 120 MYANKEIKSESGETLKIAIFNAANLKIPVSTDILSSAPVELFLQDGEHKEISKSDNGK 177

[Close]
BLAST of Lsi06G000840 vs. ExPASy TrEMBL
Match: A0A1S3BQ76 (calmodulin-binding protein 60 G-like OS=Cucumis melo OX=3656 GN=LOC103492135 PE=3 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 3.5e-06
Identity = 25/47 (53.19%), Postives = 37/47 (78.72%), Query Frame = 0 

Query: 1   MYANDEIKSENGDPLKVVICDSNNCNNVISIGQLSSAPIEFFLLDGE 48
           ++ N+E+KSE+G+PLKV ICD+ N N+++S G LSSA +E  +L GE
Sbjct: 139 IFTNNEVKSEDGEPLKVAICDATNSNSIVSTGPLSSAQVELCILPGE 185

[Close]
BLAST of Lsi06G000840 vs. ExPASy TrEMBL
Match: A0A5D3CGF5 (Calmodulin-binding protein 60 G-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G004240 PE=3 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 3.5e-06
Identity = 25/47 (53.19%), Postives = 37/47 (78.72%), Query Frame = 0 

Query: 1   MYANDEIKSENGDPLKVVICDSNNCNNVISIGQLSSAPIEFFLLDGE 48
           ++ N+E+KSE+G+PLKV ICD+ N N+++S G LSSA +E  +L GE
Sbjct: 139 IFTNNEVKSEDGEPLKVAICDATNSNSIVSTGPLSSAQVELCILPGE 185

[Close]
BLAST of Lsi06G000840 vs. NCBI nr
Match: XP_008442288.1 (PREDICTED: calmodulin-binding protein 60 A-like [Cucumis melo])

HSP 1 Score: 74.7 bits (182), Expect = 4.9e-10
Identity = 38/59 (64.41%), Postives = 43/59 (72.88%), Query Frame = 0 

Query: 1   MYANDEIKSENGDPLKVVICDSNNCNNVISIGQLSSAPIEFFLLDGELKEIMNSRKGKP 60
           MYAN EIKSENG+PLK+ I DS N N  +S  +LSSAP+E FL DGE KEI  S  GKP
Sbjct: 119 MYANKEIKSENGEPLKIGIFDSANLNVPVSTDKLSSAPVELFLEDGEHKEISKSDNGKP 177

[Close]
BLAST of Lsi06G000840 vs. NCBI nr
Match: KAA0041298.1 (calmodulin-binding protein 60 A-like [Cucumis melo var. makuwa] >TYK02758.1 calmodulin-binding protein 60 A-like [Cucumis melo var. makuwa])

HSP 1 Score: 74.7 bits (182), Expect = 4.9e-10
Identity = 38/59 (64.41%), Postives = 43/59 (72.88%), Query Frame = 0 

Query: 1  MYANDEIKSENGDPLKVVICDSNNCNNVISIGQLSSAPIEFFLLDGELKEIMNSRKGKP 60
          MYAN EIKSENG+PLK+ I DS N N  +S  +LSSAP+E FL DGE KEI  S  GKP
Sbjct: 1  MYANKEIKSENGEPLKIGIFDSANLNVPVSTDKLSSAPVELFLEDGEHKEISKSDNGKP 59

[Close]
BLAST of Lsi06G000840 vs. NCBI nr
Match: XP_038877331.1 (calmodulin-binding protein 60 G-like [Benincasa hispida])

HSP 1 Score: 72.4 bits (176), Expect = 2.4e-09
Identity = 38/79 (48.10%), Postives = 50/79 (63.29%), Query Frame = 0 

Query: 1  MYANDEIKSENGDPLKVVICDSNNCNNVISIGQLSSAPIEFFLLDGEL------------ 60
          MY N+EIKSENG+ L+V ICD  N   +I  G LSSAP++FF+LDG++            
Sbjct: 1  MYDNEEIKSENGEALEVAICDITNGYTIIYTGSLSSAPVDFFILDGQINSNKRRTPWTSS 60

Query: 61 ---KEIMNSRKGKPSSLIS 65
             + I+ SR+ KPSSLIS
Sbjct: 61 DFNESILTSREDKPSSLIS 79

[Close]
BLAST of Lsi06G000840 vs. NCBI nr
Match: XP_038891737.1 (calmodulin-binding protein 60 A-like [Benincasa hispida])

HSP 1 Score: 70.1 bits (170), Expect = 1.2e-08
Identity = 37/79 (46.84%), Postives = 50/79 (63.29%), Query Frame = 0 

Query: 1  MYANDEIKSENGDPLKVVICDSNNCNNVISIGQLSSAPIEFFLLDGE------------- 60
          MY N+EIKSENG+ L++ ICD  N   +I  G LSSAP++FF+LDG+             
Sbjct: 1  MYDNEEIKSENGEALELGICDITNGYTIIYTGSLSSAPVDFFILDGQINSSKRRTPCTSS 60

Query: 61 --LKEIMNSRKGKPSSLIS 65
            ++ I+ SR+ KPSSLIS
Sbjct: 61 DFIESILTSREDKPSSLIS 79

[Close]
BLAST of Lsi06G000840 vs. NCBI nr
Match: XP_031743132.1 (calmodulin-binding protein 60 G isoform X1 [Cucumis sativus])

HSP 1 Score: 61.2 bits (147), Expect = 5.6e-06
Identity = 25/47 (53.19%), Postives = 36/47 (76.60%), Query Frame = 0 

Query: 1   MYANDEIKSENGDPLKVVICDSNNCNNVISIGQLSSAPIEFFLLDGE 48
           ++ N+EIKSE+G+PLKV ICD+ NCN+++S   LSS  +E  +L GE
Sbjct: 140 IFTNNEIKSEDGEPLKVAICDTTNCNSIVSTSPLSSVQVELCILPGE 186

The following BLAST results are available for this feature:
BLAST of Lsi06G000840 vs.
Match NameE-valueIdentityDescription
BLAST of Lsi06G000840 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7TEC62.4e-1064.41Calmodulin-binding protein 60 A-like OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A1S3B5C32.4e-1064.41calmodulin-binding protein 60 A-like OS=Cucumis melo OX=3656 GN=LOC103486196 PE=... [more]
A0A0A0KZ382.7e-0655.17Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G494210 PE=3 SV=1[more]
A0A1S3BQ763.5e-0653.19calmodulin-binding protein 60 G-like OS=Cucumis melo OX=3656 GN=LOC103492135 PE=... [more]
A0A5D3CGF53.5e-0653.19Calmodulin-binding protein 60 G-like OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
BLAST of Lsi06G000840 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008442288.14.9e-1064.41PREDICTED: calmodulin-binding protein 60 A-like [Cucumis melo][more]
KAA0041298.14.9e-1064.41calmodulin-binding protein 60 A-like [Cucumis melo var. makuwa] >TYK02758.1 calm... [more]
XP_038877331.12.4e-0948.10calmodulin-binding protein 60 G-like [Benincasa hispida][more]
XP_038891737.11.2e-0846.84calmodulin-binding protein 60 A-like [Benincasa hispida][more]
XP_031743132.15.6e-0653.19calmodulin-binding protein 60 G isoform X1 [Cucumis sativus][more]
BLAST of Lsi06G000840 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi06G000840.1Lsi06G000840.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005516 calmodulin binding