Lsi06G000700 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi06G000700
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	single-stranded DNA-binding protein, mitochondrial
Location	chr06: 622276 .. 629454 (+)
RNA-Seq Expression	Lsi06G000700
Synteny	Lsi06G000700

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTGTTATAATCTCTCCATTTGCTTGTTCGAAAATCCTATTTCAAGGTGGTTGTTTTTTGTTGCCATCAAATTAATTAATACTTGTATAATGGAATGGACACGATCCTTTCTTTTGATTTGTTGGGTTTTTGTTATCGGTGAATCATTTGAGGTAGCTAAAGTATGACCTAGATATTGTTTTTGGGTAAAAATGGATGCATCAAGTAACTAGCCAAGTTGCTAACGTAGCTAAAGTGGTGATAAATTTCATCAGTAAAATGAGGACTCATCAGTAAAATGGGTCCTCATTGACTAAGTATTAAGTAAGAAAACTCCATATTTGTAAGTACACAAAAGCAACTAGAGGTAGTCGTTGGAGGTGATATTTGGAGTTGACCGCCGAATGTAGTTGTCTGAGCTAGTCGCAGAGGTGGTTGTGGTCAAAATTGAGCATAAAAGGTTGTCTTCGTTGGAGTTGGTTGTCGACGGTTGGAGTTATTGGAAACATTGGAGGGAGGAAGAGCTACAACAAAACAGGGTTAAAATACTCTTATTCCCTATTTTCTTAACGGACTTTCTACACATATAGCATAAATAAATAGGTTTGTCTAAACTTTCCTATTTCTTACATGAATATCCTAATGAGCTATTATTTTACACAAAAGTCTGACCTAATTTACTTTTTCAACCCTCTTTACAATTTACTTTGTTAAAATTATATATAATAATATTAATATTAAAAGAAATATGTAAGAGAAATTTCTGCAGTTATAGTCTTCCTAAAACGAATCTCTTTACAAAACATACACAAGTAAAGAAAGTCCATTAAAAAATCCGAAAATTATTGTCCTCGTAAATGGAAACAAGAATCAACAAGAAGCTTCAAAAGAGAAAACAATGTATATTGATATATACAATACTATATATTTGAATTTTCTAGAACTAAACAATGATATATTTGATAAGTGTATGAACAAGACAATTTGTACAATATATCATCTTATATACCGAACAGTATATGCAATGTATATTCATATTTTCCAGTATATTTGTAAACACACCAAAAAATAAATTATGGTATATGTGATGTATATTTACATTTTACAATATATTACTAGTATATTCGACATATACTTGAGGTCTCAATTGAGAGGTGATCTAAACTTTAATTTGAAATACATGCATTAAATGAATATCAACCAAAATTTATAATTACAAAACCAAAGTCGAAATTCAAAAATGATGTTAATAAGAAAAGAATTAAATATTTCAAAATTTTATTGATGAGAGATAATGTAATTAATAATATTTCAAAAAAAATAAAATCCTTATATAATTAATAATAAATTTGGAAATGATATATATTTTTATTTCAAAATATTACGAAATTAAAAGATAAGAGAGAATATCAAAAGGTTAAAATTGTTCAAAGATGTTGCTAAAATCTAGTTATGAAATATTACTAAATTTTAGGATATTTGTGAAATATTAGTTATATAGTAGGCTAATTCCAAACTTTCTTTCTTAACACACCCTTAAACAGGTGGATTATTCTACCCCGCTTAACCTATTCTAAATTGGTGTCTCAAACACCTTCTAAGTCTTTACAAAATTAAAATTTGTGATTAAGTTTAATGAGAGTTTTCATGAGAGAGACTAAATTATTACAAATTTTAAATTATAAAAGACGAAATGGCTACAAATCTGAAAACTTGAGAACTAAGGCCCCCGTTGGTAACCATTTGATTTTTTGTTTTTTGTTTTTGAAAATTAAGCCTAAAAACACATTTTTCATCACTAAATTTTTTGCTTTGTTACCTACTTTTTGCCAATGAAGTTTTGAAAACTAGGTTCCATTTGGTAACTATTTGATTTTTTATTTTTTGTTTTTGAAAATTAAGCCTATAGAGACTACTTTCACATCTAAATTTCTTCCTTTGTTATCTACTTTTTACCAATGGTTTAAAAAATCATGCCAAATTTTGAAAACTAAAAAACCGTAGCTTTTAAAAACTTGTTATTATTTTTAGAATTTGGCTAAGAATTCAACCATTATACTTAAAAAAAAAGATGCAAATCATTATAAGAAATGGGGAGGAAATATGTTTAATTTTCAAAAACCAAAAACAAAAAAACGAAATGGTTACCAAACAGGATTTAAAAAAAAAGTAGTTTTTAAAAGGTAGATTTTTTTTTAATAAAAGAATTTGGCTAAGAATTCAACTCTTTTACTTAAGAAAGATGAAAACCATTGTACGAAATTGGAAAGAAATAGGCTTAACATCAAAAACCAAATAATTATCAAATGATGGCTAAATTGTTACGAATTTTATCGCTCCTTCCTTTTGTTCGTCATCAGACATAACTGCAATTTTTTCCTTTAATTTTTTTCCTTTGTTAAGATTCTTCCTTTCATTTGTTGCTCCTACTTATCACTTCTCACTTTTGCTCCTTTTTCTAGTTCCTCATTAGGCACAACTGTAACTTTTTTCTTCGATTTTTTCCTTTGTTCAAATTCTTTCTCTCGCTTCTCACTCCTTCCTCTTGTTTCTCATCAGATAGAACTGCAATTTTTTTTTTAAAAAAAACGGTAGAACAAAGAAGGAAGATAACTATTTCTTGAAGAACGAAGAAGAAGAACGCAGAAAAAAATGGAAGAAGGAGGAGAAGAAGAAGACAATGACACATAACCAACGAGAAACAAAAAGTTAGAAGAAGAAATGCAAAAAAAAAGTAAAAAAAAAAAAAGAAAAGAAAGAAGAAGAAATGTAGAAAAACGAAAAGAAAGAAAGAAGGCTGCAAAAGAAAGAATGAACAAGAAAGAAGGATTAAAGTGGTAATTTCATATGATGACAACATCAACATAATGCCAAAATTCATTTGTTTTGAAAGTTAGGTCTACTTTTCATTTGAGCAATTATTGATATTTCTCAAACATGTTTAACCAAAATAATAATAAATAAATAAATAAGTAAATAAGTAGCAAGAGCCTAAAACCCTTCTTCTACCCTGATCGAATCGTCACTTCCATTTCTGCTCTCTCTCGATCAACATGAACACAGTCGCAATGAGATTCCTCAAGCGTTTCAGAATTTCTTCTTCAAATTCTCCCACATCTTCGTTTGGTACTCTCTCTCCCTCTCTCACTTTGTTAATTAAGGCGTATGTTCTTTCTGTTATTCGAATTGCTTTCGGTTGAGAGCTGAAGGAATTTCCCAAGACGTTTCTATGGTTAACTGTCCAAAAGCTCGTTAGATTTTTTTGCAATTTGATCTTCGGAGTGAGTTTTTATCAAATACATGCTGGGGGAACTTGTTTATGTTTTTTAATTTGAGTGGCCCAACCAAGAATTTCGCTATTTTTGTGTATTGAGTTTATCTAAGTGTAATGTGTGTGCTGGAGGGATGGATTGGTTAATTCTTGAACGTTTGGTCGTAGTGGCAAGTAGGCAAACAAGCTCAAAGTTGTGGTTATCGACCGGTGCTTCTGAAAGTGACATAGATGTTGAGAAGAACAATGGAGAAGAAGAATATGATGAATTGTTTAATGATAAAATTGATTCACAGCCCCAGGGTGTGGATCCCAGGCGAGGTTGGGGATATCGAGGCGTACATAAGGTATCTGATCTTTGTCTATAGACGTGTTCCATTTCTAAAAGTTGGAATTTTTCCCAATAAGTGAACATTCTGTTCTTTTGATGATACTTCGTGATTTTTTGGTGATTGTTTTACTTTTTTACAAACTATCCAAAATAAAGACAAGAGTTTCCTCTCTTTGGCAATTGATCAAATATCTTCCTTGGTGGGTTATATTAAGTTCATCCTCAACTAAGCAAAAGAAATTGTCTTTAATTCAGGCGATAAGAGTATGTGAAAACGAGGGAAAACCAGAGAAATGATTTCTCTTCAAATTTGTTATTCTTCTGCAGGGAAAGAAGGGGTCAGCGATCCCCAATATGATGTCTTATTCTGTTTTAAAATGTGACAATATGTTTACAGGCAATAATTTGTGGAAAGGTTGGGCAAGCCCCTGTGCAGAAGATCTTGAGAGATGGGCGCATGATAACGATCTTTACGGTTGGAACAGGAGGGATGTTTGACCAACGAATTGTTGAAGCAAAAGATCTGCCAAGGCCTGCTCAGTGGCATCGTATTGCTGTGCATAATGAACCACTTGGTGCTTATGCAGTTCAACAAATTGTTAAAAAGTATGATTTGAACTTCTCATAAAAGCTAGTTTGTCTGTATAATTTCACTGATTCTTGGTGGACTGTCAGTGCATCAGTTTATGTTGAGGGCGACATTGAGACCAGAGTCTACAATGACAGCATCAATGGTGAAGTGAAAAATGTTCCAGAGATATGTGTTCGACGCGATGGTATAGTAACACATACTATTGTTTTTTTATTTCCTTTTGAATGGTTCTCTGAAATTAGTTGAACAGTGATAACTTCTGATAACTTCTGTTCTTTCTGCATCTACTTCATTATATCTTAAATGTCAGTTTAAGCATATAAAAGGGTGTTTTTGGATGTTCATAATTATAACGTTAAATTATCATATTAGTTCCTATCATTTGTACTTTAGATTTTAATTTAGCTCCTATAATTTTAAAGGTTCCAATTTAGTCCCTTTTATTTTGTTTGATTTTCCAAAATGTCTCTAGTATAACAAAAAGTTGACAATTATTTTACATGACAAATTTTCTTTGGACATAACACATTTTCTTTGGGTATGATAGAGAGGTGATGAGTTGGTGTCTAAAGAATATGTATCATGTAAGAAAAGTGCCAGCAAGTGGTAAACTCTCAAGTGTTTTGAGATATTTACCAGTAATGGGGACCAAGTTGAAATTCTTGAAACCATAGGAAAAAACAAACAAACAAACAATAGAGACAAAAATGGTAATTTATCCTAATCTTAATACGGTACAAACAGAAAATTATTTACAACCATGCACAGAATACTTTTTGTTACATGTTTATTCTTATGTGATCTGTGAAAGGCCTTGTTAGGGACTCCTTTAACTGCCATGCTTCATTTTTGCAGGGAAGATTCGCCTTTTAAAGCCCGGAGAAAGTGCCAGCCATATTTCTCTAGACGATTTAAGTGAGTTAGCCTGTTAACCATTTTGTTTATATGATCACTAAGCATGGTAACAATGCAGTGCATGACAACTTTTTCATTCTCTATCGCAATCTGATGTGTTATTTTTTACTGGTTTTGTGACTTACAGAAGAAGGGTTGTTTCAGAACGAGACATAATTGCCATAACATGTTGCCAAAAACCTCAGTCAGTTGAAGTTTGTGTAGCTTTGTAATTTGGACACGAGAGAGAGGGAGAGAGAGAGAGAGAGGCTGTTAATTGCCATTAGACGATTGAACTATAGTTGAGTACTGAACCACCAATCCCCCATAATCTCTTCCTGCAATTGTTTATTAACATTGTAGCATTTTCTTCTTCAAGGCTTTAAGCCAGTTTTGTGTTGGATTGGCAAGGGATATTATAGGTTCACAAGAGCTGTCACTGCTGTTATCTTTAATCTCCTTTAAATGCACTCCTAAAAATGAAGGCATCATAATTTTGAAATCCACATTATTAAAATTTAAATATAGTTCACTAGTCTTGTTGCTGTACATTGTTAAGTTTTGCTTGATAACCGCTTTATGGATGATCCCTATTTCAGAGGAGATTATTACAATCTTTTCCCTATTGCTGTTTAAAATAATCCTTAGAAAAAATATTTTGTTTCCATTTGGCTTTTGGTTTGAAGACTAATTGAATCAATGGTTAGCCTGTGCTTGAACGATGACATTGCAAGAAGCAACTTTCTATAGTATGGGATGGTCCTATTGACAATGATTTTCACCTTTTGCAATGGCACACACAGGAATTCATTGTCAAATTTAAGCACATTTAAAAGTTTAACACAAAGAAATTTAAGCACATTTATAAGTTATTTTTCAAGAACTAATATCAAACCTAGAATACTGTCTGATTCCCATGTAGACTCTTCATGTCTGGTTAACAAAAATGTGAATGGCAGTGAAAAGCTACTGAAAATTTCCTTAACGCAAAGCTGAAGAGTTCAAATGAAAATCGCAAATGTCATCTTGAATTGTATGGGTCATTACAATTGCAATTGAAGTTTAAATTTAAGCATTTTCTATGGAAATTGATGCAAATTATCAAGCAAAGTAAAAGTAGAAGCAGAATGTGAAAAAATGCTAAGAAGACAATGGGACAGTCACAAAACAATCTACAATTTACTCTAAAATTGAAGTTGTTAGCAATCAAACAGTCAAAGCAATTTTGTCTGATATCCATGTTTGTCTATCTTGTCAGTCAGTCAGTCCAACAGCTGAGCAAGAAACCAAATGAAATCAAGCTTTTTAGAAGTCTCCAAAACATCTTTTCTTCTACCAACTCTTTCTTTTATCTCAACCTCATTTTCTTACACGCATCTATAACAATCACCACAAGGGAAAGACAAAAAAAAGAAAAAAAAAAAAAAAAAACAAGCATGCTCACACTGCCAGATGAGGGAAAAAAAATTTATATGGAGTTATCAACATATACTATGTTATGGGATAAATTACTAAACGGTTATTGTAGGTTTTATTGGCCTTTTTCCTTCCATGGCGTCTTTCTTTTTTCTACAAGTTGCACAGAGGAATGGACCTTCCCATGGTTTCGATGACGGTGAAAAGAAAGGCCCCGAGTTCATCGACAAATTTTCATTTGGGGGTTGATCCACTTGACAGACTGCACATTTGAAGATCCCTGAGTTTGGATCCGAAGGAAAATCTTTGCCTAGCCTGCATTTCGATTGAGATGGGAGAAAGTTCAGGAATAAGTGATAGTGAACATGTTTTAAGTCACTTCAGATGGAAATTGCAATATTACTGCAGAATACCAGCTGTTTTTCTATTACTATAACAAGTTAGGCAGAATTAGAAAAAGAGAATCGACAATGAAAAAGAAAATCAAATGTGTCTGGTTAATTACAGTATGATATATATCAATAATGAAGAAAATAATCCTAGGAAACTATCCTAAGCTAAGAGCACTTTTACTAACAATATAGCAAGTTTGAAAGAATAACAGTCATGGTCAAATTCGACGTGGGATATCGACTAATCTCACAGGACAACCCACCTGATCCTACAACATTTGGGTGTCAAGGAAACCCGTAG

mRNA sequence

ATGGTTTGTAATGTGTGTGCTGGAGGGATGGATTGGTTAATTCTTGAACGTTTGGTCGTAGTGGCAAGTAGGCAAACAAGCTCAAAGTTGTGGTTATCGACCGGTGCTTCTGAAAGTGACATAGATGTTGAGAAGAACAATGGAGAAGAAGAATATGATGAATTGTTTAATGATAAAATTGATTCACAGCCCCAGGGTGTGGATCCCAGGCGAGGTTGGGGATATCGAGGCGTACATAAGGGAAAGAAGGGGTCAGCGATCCCCAATATGATGTCTTATTCTGCAATAATTTGTGGAAAGGTTGGGCAAGCCCCTGTGCAGAAGATCTTGAGAGATGGGCGCATGATAACGATCTTTACGGTTGGAACAGGAGGGATGTTTGACCAACGAATTGTTGAAGCAAAAGATCTGCCAAGGCCTGCTCAGTGGCATCGTATTGCTGTGCATAATGAACCACTTGGTGCTTATGCAGTTCAACAAATTGTTAAAAATGCATCAGTTTATGTTGAGGGCGACATTGAGACCAGAGTCTACAATGACAGCATCAATGGTGAAGTGAAAAATGTTCCAGAGATATGTGTTCGACGCGATGGGAAGATTCGCCTTTTAAAGCCCGGAGAAAGTGCCAGCCATATTTCTCTAGACGATTTAAGTGAAAGAAGGGTTGTTTCAGAACGAGACATAATTGCCATAACATGTTGCCAAAAACCTCAGTCAGTTGAAAGGAATGGACCTTCCCATGGTTTCGATGACGGTGAAAAGAAAGGCCCCGAGTTCATCGACAAATTTTCATTTGGGGTCATGGTCAAATTCGACGTGGGATATCGACTAATCTCACAGGACAACCCACCTGATCCTACAACATTTGGGTGTCAAGGAAACCCGTAG

Coding sequence (CDS)

ATGGTTTGTAATGTGTGTGCTGGAGGGATGGATTGGTTAATTCTTGAACGTTTGGTCGTAGTGGCAAGTAGGCAAACAAGCTCAAAGTTGTGGTTATCGACCGGTGCTTCTGAAAGTGACATAGATGTTGAGAAGAACAATGGAGAAGAAGAATATGATGAATTGTTTAATGATAAAATTGATTCACAGCCCCAGGGTGTGGATCCCAGGCGAGGTTGGGGATATCGAGGCGTACATAAGGGAAAGAAGGGGTCAGCGATCCCCAATATGATGTCTTATTCTGCAATAATTTGTGGAAAGGTTGGGCAAGCCCCTGTGCAGAAGATCTTGAGAGATGGGCGCATGATAACGATCTTTACGGTTGGAACAGGAGGGATGTTTGACCAACGAATTGTTGAAGCAAAAGATCTGCCAAGGCCTGCTCAGTGGCATCGTATTGCTGTGCATAATGAACCACTTGGTGCTTATGCAGTTCAACAAATTGTTAAAAATGCATCAGTTTATGTTGAGGGCGACATTGAGACCAGAGTCTACAATGACAGCATCAATGGTGAAGTGAAAAATGTTCCAGAGATATGTGTTCGACGCGATGGGAAGATTCGCCTTTTAAAGCCCGGAGAAAGTGCCAGCCATATTTCTCTAGACGATTTAAGTGAAAGAAGGGTTGTTTCAGAACGAGACATAATTGCCATAACATGTTGCCAAAAACCTCAGTCAGTTGAAAGGAATGGACCTTCCCATGGTTTCGATGACGGTGAAAAGAAAGGCCCCGAGTTCATCGACAAATTTTCATTTGGGGTCATGGTCAAATTCGACGTGGGATATCGACTAATCTCACAGGACAACCCACCTGATCCTACAACATTTGGGTGTCAAGGAAACCCGTAG

Protein sequence

MVCNVCAGGMDWLILERLVVVASRQTSSKLWLSTGASESDIDVEKNNGEEEYDELFNDKIDSQPQGVDPRRGWGYRGVHKGKKGSAIPNMMSYSAIICGKVGQAPVQKILRDGRMITIFTVGTGGMFDQRIVEAKDLPRPAQWHRIAVHNEPLGAYAVQQIVKNASVYVEGDIETRVYNDSINGEVKNVPEICVRRDGKIRLLKPGESASHISLDDLSERRVVSERDIIAITCCQKPQSVERNGPSHGFDDGEKKGPEFIDKFSFGVMVKFDVGYRLISQDNPPDPTTFGCQGNP

Homology

[Close]

BLAST of Lsi06G000700 vs. ExPASy Swiss-Prot
Match: Q84J78 (Single-stranded DNA-binding protein, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At4g11060 PE=2 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 8.3e-64
Identity = 121/197 (61.42%), Postives = 149/197 (75.63%), Query Frame = 0


Query: 23  SRQTSSKLWLSTGASESDIDVEKNNGEEEYDELFNDKIDSQPQGVDPRRGWGYRGVHKGK 82
           S +  SK W STG  +  +       EE+++E   ++ + QP GVDPR+GWG+RGVH+  
Sbjct: 23  SAERGSKSWFSTGPIDEGV-------EEDFEENVTERPELQPHGVDPRKGWGFRGVHR-- 82

Query: 83  KGSAIPNMMSYSAIICGKVGQAPVQKILRDGRMITIFTVGTGGMFDQRIVEAKDLPRPAQ 142
                       AIICGKVGQAP+QKILR+GR +TIFTVGTGGMFDQR+V A + P+PAQ
Sbjct: 83  ------------AIICGKVGQAPLQKILRNGRTVTIFTVGTGGMFDQRLVGATNQPKPAQ 142

Query: 143 WHRIAVHNEPLGAYAVQQIVKNASVYVEGDIETRVYNDSINGEVKNVPEICVRRDGKIRL 202
           WHRIAVHNE LG+YAVQ++ KN+SVYVEGDIETRVYNDSI+ EVK++PEICVRRDGKIR+
Sbjct: 143 WHRIAVHNEVLGSYAVQKLAKNSSVYVEGDIETRVYNDSISSEVKSIPEICVRRDGKIRM 198

Query: 203 LKPGESASHISLDDLSE 220
           +K GES S IS D+L E
Sbjct: 203 IKYGESISKISFDELKE 198

[Close]

BLAST of Lsi06G000700 vs. ExPASy Swiss-Prot
Match: Q9CYR0 (Single-stranded DNA-binding protein, mitochondrial OS=Mus musculus OX=10090 GN=Ssbp1 PE=1 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 2.5e-07
Identity = 32/109 (29.36%), Postives = 56/109 (51.38%), Query Frame = 0


Query: 79  HKGKKGSAIPNMMSYSAI-ICGKVGQAPVQKILRDGRMITIFTVGTGGMF---DQRIVEA 138
           H+ +  S++    S + + + G+VGQ PV + +     +TIF++ T  M+   D  + + 
Sbjct: 16  HESEVASSLVLERSLNRVQLLGRVGQDPVMRQVEGKNPVTIFSLATNEMWRSGDSEVYQM 75

Query: 139 KDLPRPAQWHRIAVHNEPLGAYAVQQIVKNASVYVEGDIETRVYNDSIN 184
            D+ +   WHRI+V    L   A Q + K A ++VEG ++   Y D  N
Sbjct: 76  GDVSQKTTWHRISVFRPGLRDVAYQYVKKGARIFVEGKVDYGEYMDKNN 124

[Close]

BLAST of Lsi06G000700 vs. ExPASy Swiss-Prot
Match: Q1RK72 (Single-stranded DNA-binding protein OS=Rickettsia bellii (strain RML369-C) OX=336407 GN=ssb PE=3 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 3.2e-07
Identity = 31/120 (25.83%), Postives = 61/120 (50.83%), Query Frame = 0


Query: 97  ICGKVGQAPVQKILRDGRMITIFTVGTGGMFDQRIVEAKDLPRPAQWHRIAVHNEPLGAY 156
           + G +G+ P  +   +G+ I   ++ T  ++  R+   K      +WHR+ + NE L + 
Sbjct: 10  LIGNLGRDPEIRTTGEGKEIANLSLATTDIWKDRVTGEK--KEKTEWHRVVIFNEGLVSV 69

Query: 157 AVQQIVKNASVYVEGDIETRVYNDSINGEVKNVPEICVRRDGKIRLLKPGESASHISLDD 216
               + K + +Y+EG ++TR +NDS +G  K   EI ++      +L   ++++  SL D
Sbjct: 70  VKNYVKKGSKLYIEGSLQTRKWNDS-SGVEKYTTEIVLQNFNSQLILLDSKNSTSSSLQD 126

[Close]

BLAST of Lsi06G000700 vs. ExPASy Swiss-Prot
Match: P28042 (Single-stranded DNA-binding protein, mitochondrial OS=Rattus norvegicus OX=10116 GN=Ssbp1 PE=1 SV=2)

HSP 1 Score: 55.8 bits (133), Expect = 9.3e-07
Identity = 29/90 (32.22%), Postives = 46/90 (51.11%), Query Frame = 0


Query: 97  ICGKVGQAPVQKILRDGRMITIFTVGTGGMF---DQRIVEAKDLPRPAQWHRIAVHNEPL 156
           + G+VGQ PV + +     +TIF++ T  M+   D    +  D+ +   WHRI+V    L
Sbjct: 35  LLGRVGQDPVMRQVEGKNPVTIFSLATNEMWRSGDNEAYQMGDVSQKTTWHRISVFRPGL 94

Query: 157 GAYAVQQIVKNASVYVEGDIETRVYNDSIN 184
              A Q + K A ++VEG ++   Y D  N
Sbjct: 95  RDVAYQYVKKGARIFVEGKVDYGEYMDKNN 124

[Close]

BLAST of Lsi06G000700 vs. ExPASy Swiss-Prot
Match: Q2YPX7 (Single-stranded DNA-binding protein OS=Brucella abortus (strain 2308) OX=359391 GN=ssb PE=3 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.2e-06
Identity = 34/110 (30.91%), Postives = 58/110 (52.73%), Query Frame = 0


Query: 96  IICGKVGQAPVQKILRDGRMITIFTVGTGGMF-DQRIVEAKDLPRPAQWHRIAVHNEPLG 155
           I+ G +G  P  + L  G M+    + T   + D++  E KD     +WH + + NE L 
Sbjct: 9   ILVGNLGADPEIRRLNSGDMVANLRIATSESWRDRQTGERKD---RTEWHSVVIFNENLA 68

Query: 156 AYAVQQIVKNASVYVEGDIETRVYNDSINGEVKNVPEICVRR-DGKIRLL 204
             A Q + K A VY+EG ++TR + D  NG  +   EI +++  G++++L
Sbjct: 69  KVAEQYLKKGAKVYIEGALQTRKWQDQ-NGNDRYSKEIVLQKFRGELQML 114

[Close]

BLAST of Lsi06G000700 vs. ExPASy TrEMBL
Match: A0A6J1HZ42 (single-stranded DNA-binding protein, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111467920 PE=4 SV=1)

HSP 1 Score: 332.8 bits (852), Expect = 1.5e-87
Identity = 169/200 (84.50%), Postives = 178/200 (89.00%), Query Frame = 0


Query: 21  VASRQTSSKLWLSTGASESDIDVEKNNG-EEEYDELFNDKIDSQPQGVDPRRGWGYRGVH 80
           VASRQTSSKLWLSTGAS S IDVEKNNG EEEYD+ FNDKI+ QPQGVDPRRGWG+RGVH
Sbjct: 19  VASRQTSSKLWLSTGASGSGIDVEKNNGEEEEYDDFFNDKIELQPQGVDPRRGWGFRGVH 78

Query: 81  KGKKGSAIPNMMSYSAIICGKVGQAPVQKILRDGRMITIFTVGTGGMFDQRIVEAKDLPR 140
           K              AIICG++GQAPVQKILR+GR ITIFTVGTGGMFDQRIVEAKDLP+
Sbjct: 79  K--------------AIICGRIGQAPVQKILRNGRTITIFTVGTGGMFDQRIVEAKDLPK 138

Query: 141 PAQWHRIAVHNEPLGAYAVQQIVKNASVYVEGDIETRVYNDSINGEVKNVPEICVRRDGK 200
           PAQWHRIAVHNEPLGAYAVQQ+VKNASVYVEGDIETRVYNDSINGEVKNVPEICVRRDGK
Sbjct: 139 PAQWHRIAVHNEPLGAYAVQQLVKNASVYVEGDIETRVYNDSINGEVKNVPEICVRRDGK 198

Query: 201 IRLLKPGESASHISLDDLSE 220
           IRLLK GESAS+ISLDDL E
Sbjct: 199 IRLLKAGESASNISLDDLKE 204

[Close]

BLAST of Lsi06G000700 vs. ExPASy TrEMBL
Match: A0A6J1HCE9 (single-stranded DNA-binding protein, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111462062 PE=4 SV=1)

HSP 1 Score: 328.6 bits (841), Expect = 2.8e-86
Identity = 167/200 (83.50%), Postives = 176/200 (88.00%), Query Frame = 0


Query: 21  VASRQTSSKLWLSTGASESDIDVEKNNG-EEEYDELFNDKIDSQPQGVDPRRGWGYRGVH 80
           VASRQTSSKLWLST AS S IDVEKNNG EEEYD+ FNDKI+ QPQGVDPRRGWG+RGVH
Sbjct: 19  VASRQTSSKLWLSTSASGSGIDVEKNNGDEEEYDDFFNDKIELQPQGVDPRRGWGFRGVH 78

Query: 81  KGKKGSAIPNMMSYSAIICGKVGQAPVQKILRDGRMITIFTVGTGGMFDQRIVEAKDLPR 140
           K              AIICG++GQAPVQKILR+GR ITIFTVGTGGMFDQRIVEAKDLP+
Sbjct: 79  K--------------AIICGRIGQAPVQKILRNGRTITIFTVGTGGMFDQRIVEAKDLPK 138

Query: 141 PAQWHRIAVHNEPLGAYAVQQIVKNASVYVEGDIETRVYNDSINGEVKNVPEICVRRDGK 200
           PAQWHRIAVHNEPLGAYAVQQ+VKNASVYVEGDIETRVYNDSINGEVKNVPEICVRRDGK
Sbjct: 139 PAQWHRIAVHNEPLGAYAVQQLVKNASVYVEGDIETRVYNDSINGEVKNVPEICVRRDGK 198

Query: 201 IRLLKPGESASHISLDDLSE 220
           IRLLK GESAS+I LDDL E
Sbjct: 199 IRLLKAGESASNICLDDLKE 204

[Close]

BLAST of Lsi06G000700 vs. ExPASy TrEMBL
Match: A0A6J1C1K4 (single-stranded DNA-binding protein, mitochondrial OS=Momordica charantia OX=3673 GN=LOC111007549 PE=4 SV=1)

HSP 1 Score: 327.0 bits (837), Expect = 8.0e-86
Identity = 165/200 (82.50%), Postives = 177/200 (88.50%), Query Frame = 0


Query: 21  VASRQTSSKLWLSTGASESDIDVEKNN-GEEEYDELFNDKIDSQPQGVDPRRGWGYRGVH 80
           VASRQTSSKLW STG SESD DVEKNN  EEEYD++F+DK++ QPQGVDPRRGWG+RGVH
Sbjct: 25  VASRQTSSKLWFSTGVSESDNDVEKNNREEEEYDDMFDDKVELQPQGVDPRRGWGFRGVH 84

Query: 81  KGKKGSAIPNMMSYSAIICGKVGQAPVQKILRDGRMITIFTVGTGGMFDQRIVEAKDLPR 140
           K              AIICG+VGQAPVQKILR+GR ITIFTVGTGGMFDQRIVEAKDLP+
Sbjct: 85  K--------------AIICGRVGQAPVQKILRNGRTITIFTVGTGGMFDQRIVEAKDLPK 144

Query: 141 PAQWHRIAVHNEPLGAYAVQQIVKNASVYVEGDIETRVYNDSINGEVKNVPEICVRRDGK 200
           PAQWHRIAVHNEPLGAYAVQQ+VK+ASVYVEGDIETRVYNDSINGEVKNVPEICVRRDGK
Sbjct: 145 PAQWHRIAVHNEPLGAYAVQQLVKDASVYVEGDIETRVYNDSINGEVKNVPEICVRRDGK 204

Query: 201 IRLLKPGESASHISLDDLSE 220
           IRLLKP ESAS+ISLDDL E
Sbjct: 205 IRLLKPAESASNISLDDLKE 210

[Close]

BLAST of Lsi06G000700 vs. ExPASy TrEMBL
Match: A0A0A0LVY2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G568540 PE=4 SV=1)

HSP 1 Score: 297.0 bits (759), Expect = 8.9e-77
Identity = 149/199 (74.87%), Postives = 168/199 (84.42%), Query Frame = 0


Query: 21  VASRQTSSKLWLSTGASESDIDVEKNNGEEEYDELFNDKIDSQPQGVDPRRGWGYRGVHK 80
           VAS QTSSK WLSTGASE D DVEKN+GEE+  + F++++  QPQGVDP RGWGYRGVHK
Sbjct: 25  VASAQTSSKFWLSTGASEGDNDVEKNDGEEDDYDTFSNEL--QPQGVDPTRGWGYRGVHK 84

Query: 81  GKKGSAIPNMMSYSAIICGKVGQAPVQKILRDGRMITIFTVGTGGMFDQRIVEAKDLPRP 140
                         AIICG+VGQAPVQKILR+GR ITIFTVGTGGM+DQRI + +DLP+P
Sbjct: 85  --------------AIICGRVGQAPVQKILRNGRTITIFTVGTGGMYDQRIFDGRDLPKP 144

Query: 141 AQWHRIAVHNEPLGAYAVQQIVKNASVYVEGDIETRVYNDSINGEVKNVPEICVRRDGKI 200
           AQWHRIAVHNE LGAYAVQ++ +NASVYVEGDIETRVYNDSINGEVKN+PEICVRRDG +
Sbjct: 145 AQWHRIAVHNELLGAYAVQKLCRNASVYVEGDIETRVYNDSINGEVKNIPEICVRRDGTL 204

Query: 201 RLLKPGESASHISLDDLSE 220
           RLLKPGESAS+ISLDDL E
Sbjct: 205 RLLKPGESASNISLDDLKE 207

[Close]

BLAST of Lsi06G000700 vs. ExPASy TrEMBL
Match: A0A1S3BQI7 (single-stranded DNA-binding protein, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103492127 PE=4 SV=1)

HSP 1 Score: 296.6 bits (758), Expect = 1.2e-76
Identity = 150/206 (72.82%), Postives = 170/206 (82.52%), Query Frame = 0


Query: 21  VASRQTSSKLWLSTGASESDIDVEKNN-GEEEYDELFNDKIDSQPQGVDPRRGWGYRGVH 80
           VAS QTSSK WLSTGASESD+D+EKN+ G+++YD   N   + QPQGVDP RGWGYRGVH
Sbjct: 25  VASTQTSSKFWLSTGASESDVDIEKNDGGDDDYDAFSN---ELQPQGVDPSRGWGYRGVH 84

Query: 81  KGKKGSAIPNMMSYSAIICGKVGQAPVQKILRDGRMITIFTVGTGGMFDQRIVEAKDLPR 140
           K              AIICG+VGQAPVQKILR+GR ITIFTVGTGGM+DQRIV+ + LP+
Sbjct: 85  K--------------AIICGRVGQAPVQKILRNGRTITIFTVGTGGMYDQRIVDGRGLPK 144

Query: 141 PAQWHRIAVHNEPLGAYAVQQIVKNASVYVEGDIETRVYNDSINGEVKNVPEICVRRDGK 200
           PAQWHRIAVHNE LGAYAVQ++ KNASVYVEGDIETRVYNDSINGEVKN+PEICVRRDG 
Sbjct: 145 PAQWHRIAVHNELLGAYAVQKLCKNASVYVEGDIETRVYNDSINGEVKNIPEICVRRDGM 204

Query: 201 IRLLKPGESASHISLDDLSERRVVSE 226
           + LLKPGESAS++SLDDL ER   +E
Sbjct: 205 LHLLKPGESASNLSLDDLKERLFSNE 213

[Close]

BLAST of Lsi06G000700 vs. NCBI nr
Match: XP_038878660.1 (single-stranded DNA-binding protein, mitochondrial [Benincasa hispida])

HSP 1 Score: 333.2 bits (853), Expect = 2.3e-87
Identity = 167/200 (83.50%), Postives = 178/200 (89.00%), Query Frame = 0


Query: 21  VASRQTSSKLWLSTGASESDIDVEKNNGEE-EYDELFNDKIDSQPQGVDPRRGWGYRGVH 80
           VASRQTS KLWLST ASESD+DVEKNNGEE EYD+ FN+K++ QPQGVDPRRGWGYRGVH
Sbjct: 25  VASRQTSWKLWLSTDASESDVDVEKNNGEEDEYDQFFNEKVELQPQGVDPRRGWGYRGVH 84

Query: 81  KGKKGSAIPNMMSYSAIICGKVGQAPVQKILRDGRMITIFTVGTGGMFDQRIVEAKDLPR 140
           K              AIICG+VGQAPVQKILR+GR ITIFTVGTGGMFDQRIVEAKDLPR
Sbjct: 85  K--------------AIICGRVGQAPVQKILRNGRTITIFTVGTGGMFDQRIVEAKDLPR 144

Query: 141 PAQWHRIAVHNEPLGAYAVQQIVKNASVYVEGDIETRVYNDSINGEVKNVPEICVRRDGK 200
           PAQWHRIAVHNEPLGAYAVQQ+VKNASVYVEGDIETRVYNDSI GEVKN+PEICVRRDGK
Sbjct: 145 PAQWHRIAVHNEPLGAYAVQQLVKNASVYVEGDIETRVYNDSIGGEVKNIPEICVRRDGK 204

Query: 201 IRLLKPGESASHISLDDLSE 220
           +RLLKPGESAS+ISLDDL E
Sbjct: 205 LRLLKPGESASNISLDDLKE 210

[Close]

BLAST of Lsi06G000700 vs. NCBI nr
Match: XP_022968788.1 (single-stranded DNA-binding protein, mitochondrial [Cucurbita maxima] >XP_022968789.1 single-stranded DNA-binding protein, mitochondrial [Cucurbita maxima])

HSP 1 Score: 332.8 bits (852), Expect = 3.0e-87
Identity = 169/200 (84.50%), Postives = 178/200 (89.00%), Query Frame = 0


Query: 21  VASRQTSSKLWLSTGASESDIDVEKNNG-EEEYDELFNDKIDSQPQGVDPRRGWGYRGVH 80
           VASRQTSSKLWLSTGAS S IDVEKNNG EEEYD+ FNDKI+ QPQGVDPRRGWG+RGVH
Sbjct: 19  VASRQTSSKLWLSTGASGSGIDVEKNNGEEEEYDDFFNDKIELQPQGVDPRRGWGFRGVH 78

Query: 81  KGKKGSAIPNMMSYSAIICGKVGQAPVQKILRDGRMITIFTVGTGGMFDQRIVEAKDLPR 140
           K              AIICG++GQAPVQKILR+GR ITIFTVGTGGMFDQRIVEAKDLP+
Sbjct: 79  K--------------AIICGRIGQAPVQKILRNGRTITIFTVGTGGMFDQRIVEAKDLPK 138

Query: 141 PAQWHRIAVHNEPLGAYAVQQIVKNASVYVEGDIETRVYNDSINGEVKNVPEICVRRDGK 200
           PAQWHRIAVHNEPLGAYAVQQ+VKNASVYVEGDIETRVYNDSINGEVKNVPEICVRRDGK
Sbjct: 139 PAQWHRIAVHNEPLGAYAVQQLVKNASVYVEGDIETRVYNDSINGEVKNVPEICVRRDGK 198

Query: 201 IRLLKPGESASHISLDDLSE 220
           IRLLK GESAS+ISLDDL E
Sbjct: 199 IRLLKAGESASNISLDDLKE 204

[Close]

BLAST of Lsi06G000700 vs. NCBI nr
Match: KAG7024011.1 (Single-stranded DNA-binding protein, mitochondrial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 330.1 bits (845), Expect = 2.0e-86
Identity = 168/200 (84.00%), Postives = 177/200 (88.50%), Query Frame = 0


Query: 21  VASRQTSSKLWLSTGASESDIDVEKNNG-EEEYDELFNDKIDSQPQGVDPRRGWGYRGVH 80
           VASRQTSSKLWLST AS S IDVEKNNG EEEYD+LFNDKI+ QPQGVDPRRGWG+RGVH
Sbjct: 19  VASRQTSSKLWLSTSASGSGIDVEKNNGEEEEYDDLFNDKIELQPQGVDPRRGWGFRGVH 78

Query: 81  KGKKGSAIPNMMSYSAIICGKVGQAPVQKILRDGRMITIFTVGTGGMFDQRIVEAKDLPR 140
           K              AIICG++GQAPVQKILR+GR ITIFTVGTGGMFDQRIVEAKDLP+
Sbjct: 79  K--------------AIICGRIGQAPVQKILRNGRTITIFTVGTGGMFDQRIVEAKDLPK 138

Query: 141 PAQWHRIAVHNEPLGAYAVQQIVKNASVYVEGDIETRVYNDSINGEVKNVPEICVRRDGK 200
           PAQWHRIAVHNEPLGAYAVQQ+VKNASVYVEGDIETRVYNDSINGEVKNVPEICVRRDGK
Sbjct: 139 PAQWHRIAVHNEPLGAYAVQQLVKNASVYVEGDIETRVYNDSINGEVKNVPEICVRRDGK 198

Query: 201 IRLLKPGESASHISLDDLSE 220
           IRLLK GESAS+I LDDL E
Sbjct: 199 IRLLKAGESASNICLDDLKE 204

[Close]

BLAST of Lsi06G000700 vs. NCBI nr
Match: XP_023516115.1 (single-stranded DNA-binding protein, mitochondrial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 328.6 bits (841), Expect = 5.7e-86
Identity = 167/200 (83.50%), Postives = 176/200 (88.00%), Query Frame = 0


Query: 21  VASRQTSSKLWLSTGASESDIDVEKNNG-EEEYDELFNDKIDSQPQGVDPRRGWGYRGVH 80
           VASRQTSSKLWLST AS S IDVEKNNG EEEYD+ FNDKI+ QPQGVDPRRGWG+RGVH
Sbjct: 19  VASRQTSSKLWLSTSASGSGIDVEKNNGDEEEYDDFFNDKIELQPQGVDPRRGWGFRGVH 78

Query: 81  KGKKGSAIPNMMSYSAIICGKVGQAPVQKILRDGRMITIFTVGTGGMFDQRIVEAKDLPR 140
           K              AIICG++GQAPVQKILR+GR ITIFTVGTGGMFDQRIVEAKDLP+
Sbjct: 79  K--------------AIICGRIGQAPVQKILRNGRTITIFTVGTGGMFDQRIVEAKDLPK 138

Query: 141 PAQWHRIAVHNEPLGAYAVQQIVKNASVYVEGDIETRVYNDSINGEVKNVPEICVRRDGK 200
           PAQWHRIAVHNEPLGAYAVQQ+VKNASVYVEGDIETRVYNDSINGEVKNVPEICVRRDGK
Sbjct: 139 PAQWHRIAVHNEPLGAYAVQQLVKNASVYVEGDIETRVYNDSINGEVKNVPEICVRRDGK 198

Query: 201 IRLLKPGESASHISLDDLSE 220
           IRLLK GESAS+I LDDL E
Sbjct: 199 IRLLKAGESASNICLDDLKE 204

[Close]

BLAST of Lsi06G000700 vs. NCBI nr
Match: XP_022961505.1 (single-stranded DNA-binding protein, mitochondrial [Cucurbita moschata])

HSP 1 Score: 328.6 bits (841), Expect = 5.7e-86
Identity = 167/200 (83.50%), Postives = 176/200 (88.00%), Query Frame = 0


Query: 21  VASRQTSSKLWLSTGASESDIDVEKNNG-EEEYDELFNDKIDSQPQGVDPRRGWGYRGVH 80
           VASRQTSSKLWLST AS S IDVEKNNG EEEYD+ FNDKI+ QPQGVDPRRGWG+RGVH
Sbjct: 19  VASRQTSSKLWLSTSASGSGIDVEKNNGDEEEYDDFFNDKIELQPQGVDPRRGWGFRGVH 78

Query: 81  KGKKGSAIPNMMSYSAIICGKVGQAPVQKILRDGRMITIFTVGTGGMFDQRIVEAKDLPR 140
           K              AIICG++GQAPVQKILR+GR ITIFTVGTGGMFDQRIVEAKDLP+
Sbjct: 79  K--------------AIICGRIGQAPVQKILRNGRTITIFTVGTGGMFDQRIVEAKDLPK 138

Query: 141 PAQWHRIAVHNEPLGAYAVQQIVKNASVYVEGDIETRVYNDSINGEVKNVPEICVRRDGK 200
           PAQWHRIAVHNEPLGAYAVQQ+VKNASVYVEGDIETRVYNDSINGEVKNVPEICVRRDGK
Sbjct: 139 PAQWHRIAVHNEPLGAYAVQQLVKNASVYVEGDIETRVYNDSINGEVKNVPEICVRRDGK 198

Query: 201 IRLLKPGESASHISLDDLSE 220
           IRLLK GESAS+I LDDL E
Sbjct: 199 IRLLKAGESASNICLDDLKE 204

[Close]

BLAST of Lsi06G000700 vs. TAIR 10
Match: AT4G11060.1 (mitochondrially targeted single-stranded DNA binding protein )

HSP 1 Score: 245.4 bits (625), Expect = 5.9e-65
Identity = 121/197 (61.42%), Postives = 149/197 (75.63%), Query Frame = 0


Query: 23  SRQTSSKLWLSTGASESDIDVEKNNGEEEYDELFNDKIDSQPQGVDPRRGWGYRGVHKGK 82
           S +  SK W STG  +  +       EE+++E   ++ + QP GVDPR+GWG+RGVH+  
Sbjct: 23  SAERGSKSWFSTGPIDEGV-------EEDFEENVTERPELQPHGVDPRKGWGFRGVHR-- 82

Query: 83  KGSAIPNMMSYSAIICGKVGQAPVQKILRDGRMITIFTVGTGGMFDQRIVEAKDLPRPAQ 142
                       AIICGKVGQAP+QKILR+GR +TIFTVGTGGMFDQR+V A + P+PAQ
Sbjct: 83  ------------AIICGKVGQAPLQKILRNGRTVTIFTVGTGGMFDQRLVGATNQPKPAQ 142

Query: 143 WHRIAVHNEPLGAYAVQQIVKNASVYVEGDIETRVYNDSINGEVKNVPEICVRRDGKIRL 202
           WHRIAVHNE LG+YAVQ++ KN+SVYVEGDIETRVYNDSI+ EVK++PEICVRRDGKIR+
Sbjct: 143 WHRIAVHNEVLGSYAVQKLAKNSSVYVEGDIETRVYNDSISSEVKSIPEICVRRDGKIRM 198

Query: 203 LKPGESASHISLDDLSE 220
           +K GES S IS D+L E
Sbjct: 203 IKYGESISKISFDELKE 198

[Close]

BLAST of Lsi06G000700 vs. TAIR 10
Match: AT3G18580.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 94.0 bits (232), Expect = 2.2e-19
Identity = 57/192 (29.69%), Postives = 104/192 (54.17%), Query Frame = 0


Query: 23  SRQTSSKLWLSTGASESDIDVEKNNGEEEYDELFNDKIDS--QPQGVDPRRGWGYRGVHK 82
           SR+    L  +   S++ +    NN     D  F D+++S  +P+  DP     + G  +
Sbjct: 9   SRRLYRSLLSNPRISQASMSFCTNNITSPEDSDF-DELESPIEPKASDPVS--RFSGEER 68

Query: 83  GKKGSAIPNMMS---YSAIICGKVGQAPVQKILRDGRMITIFTVGTGGMFDQRIVEAKDL 142
             +   + N +    + AI+ G+VGQ P+QK L+ GR +T+F+VGTGG+ + R     + 
Sbjct: 69  VMEERPLENGLDSGIFKAILVGQVGQLPLQKKLKSGRTVTLFSVGTGGIRNNRRPLINED 128

Query: 143 PR------PAQWHRIAVHNEPLGAYAVQQIVKNASVYVEGDIETRVYNDSINGEVKNVPE 202
           PR        QWHR++V+ E L    ++ +     +Y+EG++ET+++ D + G V+ + E
Sbjct: 129 PREYASRSAVQWHRVSVYPERLADLVLKNVEPGTVIYLEGNLETKIFTDPVTGLVRRIRE 188

Query: 203 ICVRRDGKIRLL 204
           + +RR+G++  L
Sbjct: 189 VAIRRNGRVVFL 197

The following BLAST results are available for this feature:

BLAST of Lsi06G000700 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q84J78	8.3e-64	61.42	Single-stranded DNA-binding protein, mitochondrial OS=Arabidopsis thaliana OX=37...	[more]
Q9CYR0	2.5e-07	29.36	Single-stranded DNA-binding protein, mitochondrial OS=Mus musculus OX=10090 GN=S...	[more]
Q1RK72	3.2e-07	25.83	Single-stranded DNA-binding protein OS=Rickettsia bellii (strain RML369-C) OX=33...	[more]
P28042	9.3e-07	32.22	Single-stranded DNA-binding protein, mitochondrial OS=Rattus norvegicus OX=10116...	[more]
Q2YPX7	1.2e-06	30.91	Single-stranded DNA-binding protein OS=Brucella abortus (strain 2308) OX=359391 ...	[more]

BLAST of Lsi06G000700 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HZ42	1.5e-87	84.50	single-stranded DNA-binding protein, mitochondrial OS=Cucurbita maxima OX=3661 G...	[more]
A0A6J1HCE9	2.8e-86	83.50	single-stranded DNA-binding protein, mitochondrial OS=Cucurbita moschata OX=3662...	[more]
A0A6J1C1K4	8.0e-86	82.50	single-stranded DNA-binding protein, mitochondrial OS=Momordica charantia OX=367...	[more]
A0A0A0LVY2	8.9e-77	74.87	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G568540 PE=4 SV=1	[more]
A0A1S3BQI7	1.2e-76	72.82	single-stranded DNA-binding protein, mitochondrial OS=Cucumis melo OX=3656 GN=LO...	[more]

BLAST of Lsi06G000700 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038878660.1	2.3e-87	83.50	single-stranded DNA-binding protein, mitochondrial [Benincasa hispida]	[more]
XP_022968788.1	3.0e-87	84.50	single-stranded DNA-binding protein, mitochondrial [Cucurbita maxima] >XP_022968...	[more]
KAG7024011.1	2.0e-86	84.00	Single-stranded DNA-binding protein, mitochondrial [Cucurbita argyrosperma subsp...	[more]
XP_023516115.1	5.7e-86	83.50	single-stranded DNA-binding protein, mitochondrial [Cucurbita pepo subsp. pepo]	[more]
XP_022961505.1	5.7e-86	83.50	single-stranded DNA-binding protein, mitochondrial [Cucurbita moschata]	[more]

BLAST of Lsi06G000700 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G11060.1	5.9e-65	61.42	mitochondrially targeted single-stranded DNA binding protein	[more]
AT3G18580.1	2.2e-19	29.69	Nucleic acid-binding, OB-fold-like protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000424	Primosome PriB/single-strand DNA-binding	PFAM	PF00436	SSB	coord: 95..195 e-value: 2.3E-19 score: 69.4
IPR000424	Primosome PriB/single-strand DNA-binding	PROSITE	PS50935	SSB	coord: 91..201 score: 11.377536
IPR000424	Primosome PriB/single-strand DNA-binding	CDD	cd04496	SSB_OBF	coord: 96..196 e-value: 3.38839E-14 score: 65.3262
None	No IPR available	GENE3D	2.40.50.140		coord: 90..204 e-value: 4.3E-17 score: 64.0
None	No IPR available	PANTHER	PTHR10302:SF13	SINGLE-STRANDED DNA-BINDING PROTEIN, MITOCHONDRIAL	coord: 23..219
IPR011344	Single-stranded DNA-binding protein	PANTHER	PTHR10302	SINGLE-STRANDED DNA-BINDING PROTEIN	coord: 23..219
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 90..196

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi06G000700.1	Lsi06G000700.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0001732	formation of cytoplasmic translation initiation complex
biological_process	GO:0006264	mitochondrial DNA replication
biological_process	GO:0051096	positive regulation of helicase activity
biological_process	GO:0006260	DNA replication
cellular_component	GO:0016282	eukaryotic 43S preinitiation complex
cellular_component	GO:0033290	eukaryotic 48S preinitiation complex
cellular_component	GO:0005852	eukaryotic translation initiation factor 3 complex
cellular_component	GO:0042645	mitochondrial nucleoid
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003697	single-stranded DNA binding
molecular_function	GO:0003743	translation initiation factor activity