Lsi06G000650 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi06G000650
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Descriptioncalmodulin-binding protein 60 B-like isoform X1
Locationchr06: 566995 .. 567365 (+)
RNA-Seq ExpressionLsi06G000650
SyntenyLsi06G000650
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CAAAAGACCTTCCATCTTCCAATCCTAATCTTCCTCTATATTTGTGTCTTCAATTTTCCATATTCAAATTCAAACTAACAGCAAAATTATGAGACACCAAATTTATAAGAACACCGACGAAAAAATCTCCCACTACTCTTTTCCATCTGGGTATTTCTTCTTCTTAACTTCAAGATCCTCTAATTCATCTGTTTTTTTCTTTTTTGTTTCTCCATGATCATTCAATTTTGTTTTGGATTATATTTCTCAGGTTTGGAGTTGGAGCAGCTGAGGTAATTTTGTGTCCTCAATCTTTGGCTTATGTTGAAAATTTCCTTCGCACGCGGGTACGTTACCTTATTTTCAAATTCCTGATTGACGTGAAAGTTTAA

mRNA sequence

CAAAAGACCTTCCATCTTCCAATCCTAATCTTCCTCTATATTTGTGTCTTCAATTTTCCATATTCAAATTCAAACTAACAGCAAAATTATGAGACACCAAATTTATAAGAACACCGACGAAAAAATCTCCCACTACTCTTTTCCATCTGGGTTTGGAGTTGGAGCAGCTGAGGTAATTTTGTGTCCTCAATCTTTGGCTTATGTTGAAAATTTCCTTCGCACGCGGGTACGTTACCTTATTTTCAAATTCCTGATTGACGTGAAAGTTTAA

Coding sequence (CDS)

ATGAGACACCAAATTTATAAGAACACCGACGAAAAAATCTCCCACTACTCTTTTCCATCTGGGTTTGGAGTTGGAGCAGCTGAGGTAATTTTGTGTCCTCAATCTTTGGCTTATGTTGAAAATTTCCTTCGCACGCGGGTACGTTACCTTATTTTCAAATTCCTGATTGACGTGAAAGTTTAA

Protein sequence

MRHQIYKNTDEKISHYSFPSGFGVGAAEVILCPQSLAYVENFLRTRVRYLIFKFLIDVKV
Homology
[Close]
BLAST of Lsi06G000650 vs. ExPASy TrEMBL
Match: A0A5D3CGD6 (Calmodulin-binding protein 60 B-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G004390 PE=3 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.2e-04
Identity = 23/42 (54.76%), Postives = 31/42 (73.81%), Query Frame = 0 

Query: 7  KNTDEKISHYSFPSGFGVGAAEVILCPQSLAYVENFLRTRVR 49
          +N     SHYSFPSGFGVG + ++L P+S+AYVEN+ R  +R
Sbjct: 13 QNYQTTSSHYSFPSGFGVGDSHLVLSPKSVAYVENYFRPLIR 54

[Close]
BLAST of Lsi06G000650 vs. ExPASy TrEMBL
Match: A0A5A7UBI3 (Calmodulin-binding protein 60 B-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold761G00680 PE=3 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.2e-04
Identity = 23/42 (54.76%), Postives = 31/42 (73.81%), Query Frame = 0 

Query: 7  KNTDEKISHYSFPSGFGVGAAEVILCPQSLAYVENFLRTRVR 49
          +N     SHYSFPSGFGVG + ++L P+S+AYVEN+ R  +R
Sbjct: 13 QNYQTTSSHYSFPSGFGVGDSHLVLSPKSVAYVENYFRPLIR 54

[Close]
BLAST of Lsi06G000650 vs. ExPASy TrEMBL
Match: A0A1S3BPF4 (calmodulin-binding protein 60 B-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103492121 PE=3 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.2e-04
Identity = 23/42 (54.76%), Postives = 31/42 (73.81%), Query Frame = 0 

Query: 7  KNTDEKISHYSFPSGFGVGAAEVILCPQSLAYVENFLRTRVR 49
          +N     SHYSFPSGFGVG + ++L P+S+AYVEN+ R  +R
Sbjct: 9  QNYQTTSSHYSFPSGFGVGDSHLVLSPKSVAYVENYFRPLIR 50

[Close]
BLAST of Lsi06G000650 vs. ExPASy TrEMBL
Match: A0A1S3BPI1 (calmodulin-binding protein 60 B-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103492121 PE=3 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.2e-04
Identity = 23/42 (54.76%), Postives = 31/42 (73.81%), Query Frame = 0 

Query: 7  KNTDEKISHYSFPSGFGVGAAEVILCPQSLAYVENFLRTRVR 49
          +N     SHYSFPSGFGVG + ++L P+S+AYVEN+ R  +R
Sbjct: 9  QNYQTTSSHYSFPSGFGVGDSHLVLSPKSVAYVENYFRPLIR 50

[Close]
BLAST of Lsi06G000650 vs. NCBI nr
Match: TYK10288.1 (calmodulin-binding protein 60 B-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 55.1 bits (131), Expect = 2.5e-04
Identity = 23/42 (54.76%), Postives = 31/42 (73.81%), Query Frame = 0 

Query: 7  KNTDEKISHYSFPSGFGVGAAEVILCPQSLAYVENFLRTRVR 49
          +N     SHYSFPSGFGVG + ++L P+S+AYVEN+ R  +R
Sbjct: 13 QNYQTTSSHYSFPSGFGVGDSHLVLSPKSVAYVENYFRPLIR 54

[Close]
BLAST of Lsi06G000650 vs. NCBI nr
Match: KAA0050941.1 (calmodulin-binding protein 60 B-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 55.1 bits (131), Expect = 2.5e-04
Identity = 23/42 (54.76%), Postives = 31/42 (73.81%), Query Frame = 0 

Query: 7  KNTDEKISHYSFPSGFGVGAAEVILCPQSLAYVENFLRTRVR 49
          +N     SHYSFPSGFGVG + ++L P+S+AYVEN+ R  +R
Sbjct: 13 QNYQTTSSHYSFPSGFGVGDSHLVLSPKSVAYVENYFRPLIR 54

[Close]
BLAST of Lsi06G000650 vs. NCBI nr
Match: XP_008450558.1 (PREDICTED: calmodulin-binding protein 60 B-like isoform X2 [Cucumis melo])

HSP 1 Score: 55.1 bits (131), Expect = 2.5e-04
Identity = 23/42 (54.76%), Postives = 31/42 (73.81%), Query Frame = 0 

Query: 7  KNTDEKISHYSFPSGFGVGAAEVILCPQSLAYVENFLRTRVR 49
          +N     SHYSFPSGFGVG + ++L P+S+AYVEN+ R  +R
Sbjct: 9  QNYQTTSSHYSFPSGFGVGDSHLVLSPKSVAYVENYFRPLIR 50

[Close]
BLAST of Lsi06G000650 vs. NCBI nr
Match: XP_008450557.1 (PREDICTED: calmodulin-binding protein 60 B-like isoform X1 [Cucumis melo])

HSP 1 Score: 55.1 bits (131), Expect = 2.5e-04
Identity = 23/42 (54.76%), Postives = 31/42 (73.81%), Query Frame = 0 

Query: 7  KNTDEKISHYSFPSGFGVGAAEVILCPQSLAYVENFLRTRVR 49
          +N     SHYSFPSGFGVG + ++L P+S+AYVEN+ R  +R
Sbjct: 9  QNYQTTSSHYSFPSGFGVGDSHLVLSPKSVAYVENYFRPLIR 50

The following BLAST results are available for this feature:
BLAST of Lsi06G000650 vs.
Match NameE-valueIdentityDescription
BLAST of Lsi06G000650 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3CGD61.2e-0454.76Calmodulin-binding protein 60 B-like isoform X2 OS=Cucumis melo var. makuwa OX=1... [more]
A0A5A7UBI31.2e-0454.76Calmodulin-binding protein 60 B-like isoform X1 OS=Cucumis melo var. makuwa OX=1... [more]
A0A1S3BPF41.2e-0454.76calmodulin-binding protein 60 B-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC10... [more]
A0A1S3BPI11.2e-0454.76calmodulin-binding protein 60 B-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC10... [more]
BLAST of Lsi06G000650 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK10288.12.5e-0454.76calmodulin-binding protein 60 B-like isoform X2 [Cucumis melo var. makuwa][more]
KAA0050941.12.5e-0454.76calmodulin-binding protein 60 B-like isoform X1 [Cucumis melo var. makuwa][more]
XP_008450558.12.5e-0454.76PREDICTED: calmodulin-binding protein 60 B-like isoform X2 [Cucumis melo][more]
XP_008450557.12.5e-0454.76PREDICTED: calmodulin-binding protein 60 B-like isoform X1 [Cucumis melo][more]
BLAST of Lsi06G000650 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi06G000650.1Lsi06G000650.1mRNA