Lsi06G000440 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi06G000440
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Resistance protein Cre
Location	chr06: 366282 .. 366572 (-)
RNA-Seq Expression	Lsi06G000440
Synteny	Lsi06G000440

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTACCTGCTGCAATATGATGCGAGGCTATTCCGCCCGGAACAAAAGGATCAAACCCTTCGACACCCCACGCAGGATTTACAGCTTGTACCCTTCCGGTTAATCCATAAGGATCGGATACCCATATTCCCGGACCATACAATCCGGTTACATGAAATGCACCAAAACCAAAGCAACCCAACCCTGAGAGAAATAAATGAATTCCAAAAATCTTCGGCAAATCCAAAGAAGGTTTTCCTGTACGTTCATCACAAAATATTTCTAGATCCCAATACACCCAATGCCAGATAG

mRNA sequence

ATGTACCTGCTGCAATATGATGCGAGGCTATTCCGCCCGGAACAAAAGGATCAAACCCTTCGACACCCCACGCAGGATTTACAGCTTGTACCCTTCCGGTTAATCCATAAGGATCGGATACCCATATTCCCGGACCATACAATCCGGTTACATGAAATGCACCAAAACCAAAGCAACCCAACCCTGAGAGAAATAAATGAATTCCAAAAATCTTCGGCAAATCCAAAGAAGGTTTTCCTGTACGTTCATCACAAAATATTTCTAGATCCCAATACACCCAATGCCAGATAG

Coding sequence (CDS)

ATGTACCTGCTGCAATATGATGCGAGGCTATTCCGCCCGGAACAAAAGGATCAAACCCTTCGACACCCCACGCAGGATTTACAGCTTGTACCCTTCCGGTTAATCCATAAGGATCGGATACCCATATTCCCGGACCATACAATCCGGTTACATGAAATGCACCAAAACCAAAGCAACCCAACCCTGAGAGAAATAAATGAATTCCAAAAATCTTCGGCAAATCCAAAGAAGGTTTTCCTGTACGTTCATCACAAAATATTTCTAGATCCCAATACACCCAATGCCAGATAG

Protein sequence

MYLLQYDARLFRPEQKDQTLRHPTQDLQLVPFRLIHKDRIPIFPDHTIRLHEMHQNQSNPTLREINEFQKSSANPKKVFLYVHHKIFLDPNTPNAR

Homology

[Close]

BLAST of Lsi06G000440 vs. ExPASy TrEMBL
Match: A0A371II03 (Uncharacterized protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_00207 PE=4 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 2.6e-33
Identity = 70/96 (72.92%), Postives = 81/96 (84.38%), Query Frame = 0


Query: 1  MYLLQYDARLFRPEQKDQTLRHPTQDLQLVPFRLIHKDRIPIFPDHTIRLHEMHQNQSNP 60
          M+LL+YD +LF PEQKDQ L HPT+DLQ+VPF+L+HKD+ PIF DHTI LHEM QNQ+ P
Sbjct: 1  MFLLRYDEKLFPPEQKDQNLPHPTRDLQIVPFQLVHKDQTPIFQDHTILLHEMRQNQNKP 60

Query: 61 TLREINEFQKSSANPKKVFLYVHHKIFLDPNTPNAR 97
           L+EINEFQK  ANPKKVF YVHHK FLDPN PNA+
Sbjct: 61 PLQEINEFQKFWANPKKVFQYVHHKRFLDPNKPNAK 96

[Close]

BLAST of Lsi06G000440 vs. ExPASy TrEMBL
Match: Q2HP06 (Resistance protein Cre (Fragment) OS=Arachis hypogaea OX=3818 GN=CRE PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 8.0e-19
Identity = 49/66 (74.24%), Postives = 53/66 (80.30%), Query Frame = 0


Query: 31 PFRLIHKDRIPIFPDHTIRLHEMHQNQSNPTLREINEFQKSSANPKKVFLYVHHKIFLDP 90
          PFRL HKDR PI  DHTI LHEM QNQ+ P L+EINEFQ+  ANPK+V LYVHHK FLDP
Sbjct: 4  PFRLGHKDRTPISQDHTILLHEMRQNQNKPPLQEINEFQRFLANPKRVCLYVHHKRFLDP 63

Query: 91 NTPNAR 97
          N PNAR
Sbjct: 64 NRPNAR 69

[Close]

BLAST of Lsi06G000440 vs. ExPASy TrEMBL
Match: A0A5K1GZQ0 (Uncharacterized protein (Fragment) OS=Nymphaea colorata OX=210225 GN=NYM_LOCUS28504 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 7.7e-14
Identity = 43/69 (62.32%), Postives = 49/69 (71.01%), Query Frame = 0


Query: 13 PEQKDQTLRHPTQDLQLVPFRLIHKDRIPIFPDHTIRLHEMHQNQSNPTLREINEFQKSS 72
          PEQKDQ    P +DLQ+  FRL HKD+ PIF  HT  LHEMHQ QS P   +INEFQ+S 
Sbjct: 4  PEQKDQNPPRPMKDLQVTLFRLAHKDQTPIFQGHTNLLHEMHQTQSKPPQIKINEFQRSW 63

Query: 73 ANPKKVFLY 82
          ANPK+VF Y
Sbjct: 64 ANPKRVFPY 72

[Close]

BLAST of Lsi06G000440 vs. ExPASy TrEMBL
Match: A4QM48 (ORF73a OS=Pinus koraiensis OX=88728 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 9.5e-12
Identity = 42/71 (59.15%), Postives = 49/71 (69.01%), Query Frame = 0


Query: 26 DLQLVPFRLIHKDRIPIFPDHTIRLHEMHQNQSNPTLREINEFQKSSANPKKVFLYVHHK 85
          D  +V F+L+HKD+ PI  DHT  LHEM Q ++   LR INEFQ   AN  KVF YVHH+
Sbjct: 3  DPLVVFFQLVHKDQTPISQDHTNPLHEMLQIRNKLLLRGINEFQILLANLNKVFPYVHHR 62

Query: 86 IFLDPNTPNAR 97
          IF DPN PNAR
Sbjct: 63 IFPDPNIPNAR 73

[Close]

BLAST of Lsi06G000440 vs. ExPASy TrEMBL
Match: A0A2P2NR92 (Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 7.5e-09
Identity = 32/44 (72.73%), Postives = 36/44 (81.82%), Query Frame = 0


Query: 53 MHQNQSNPTLREINEFQKSSANPKKVFLYVHHKIFLDPNTPNAR 97
          M QNQ+ P L+EINEFQ+  ANPK+V LYVHHK FLDPN PNAR
Sbjct: 1  MRQNQNKPPLQEINEFQRFLANPKRVCLYVHHKRFLDPNRPNAR 44

[Close]

BLAST of Lsi06G000440 vs. NCBI nr
Match: RDY14680.1 (hypothetical protein CR513_00207, partial [Mucuna pruriens])

HSP 1 Score: 151.0 bits (380), Expect = 5.3e-33
Identity = 70/96 (72.92%), Postives = 81/96 (84.38%), Query Frame = 0


Query: 1  MYLLQYDARLFRPEQKDQTLRHPTQDLQLVPFRLIHKDRIPIFPDHTIRLHEMHQNQSNP 60
          M+LL+YD +LF PEQKDQ L HPT+DLQ+VPF+L+HKD+ PIF DHTI LHEM QNQ+ P
Sbjct: 1  MFLLRYDEKLFPPEQKDQNLPHPTRDLQIVPFQLVHKDQTPIFQDHTILLHEMRQNQNKP 60

Query: 61 TLREINEFQKSSANPKKVFLYVHHKIFLDPNTPNAR 97
           L+EINEFQK  ANPKKVF YVHHK FLDPN PNA+
Sbjct: 61 PLQEINEFQKFWANPKKVFQYVHHKRFLDPNKPNAK 96

[Close]

BLAST of Lsi06G000440 vs. NCBI nr
Match: AAX70975.1 (resistance protein Cre, partial [Arachis hypogaea] >AAX70978.1 resistance protein Cre, partial [Arachis hypogaea])

HSP 1 Score: 102.8 bits (255), Expect = 1.7e-18
Identity = 49/66 (74.24%), Postives = 53/66 (80.30%), Query Frame = 0


Query: 31 PFRLIHKDRIPIFPDHTIRLHEMHQNQSNPTLREINEFQKSSANPKKVFLYVHHKIFLDP 90
          PFRL HKDR PI  DHTI LHEM QNQ+ P L+EINEFQ+  ANPK+V LYVHHK FLDP
Sbjct: 4  PFRLGHKDRTPISQDHTILLHEMRQNQNKPPLQEINEFQRFLANPKRVCLYVHHKRFLDP 63

Query: 91 NTPNAR 97
          N PNAR
Sbjct: 64 NRPNAR 69

[Close]

BLAST of Lsi06G000440 vs. NCBI nr
Match: VVW82511.1 (unnamed protein product, partial [Nymphaea colorata])

HSP 1 Score: 86.3 bits (212), Expect = 1.6e-13
Identity = 43/69 (62.32%), Postives = 49/69 (71.01%), Query Frame = 0


Query: 13 PEQKDQTLRHPTQDLQLVPFRLIHKDRIPIFPDHTIRLHEMHQNQSNPTLREINEFQKSS 72
          PEQKDQ    P +DLQ+  FRL HKD+ PIF  HT  LHEMHQ QS P   +INEFQ+S 
Sbjct: 4  PEQKDQNPPRPMKDLQVTLFRLAHKDQTPIFQGHTNLLHEMHQTQSKPPQIKINEFQRSW 63

Query: 73 ANPKKVFLY 82
          ANPK+VF Y
Sbjct: 64 ANPKRVFPY 72

[Close]

BLAST of Lsi06G000440 vs. NCBI nr
Match: ABP35385.1 (ORF73a [Pinus koraiensis])

HSP 1 Score: 79.3 bits (194), Expect = 2.0e-11
Identity = 42/71 (59.15%), Postives = 49/71 (69.01%), Query Frame = 0


Query: 26 DLQLVPFRLIHKDRIPIFPDHTIRLHEMHQNQSNPTLREINEFQKSSANPKKVFLYVHHK 85
          D  +V F+L+HKD+ PI  DHT  LHEM Q ++   LR INEFQ   AN  KVF YVHH+
Sbjct: 3  DPLVVFFQLVHKDQTPISQDHTNPLHEMLQIRNKLLLRGINEFQILLANLNKVFPYVHHR 62

Query: 86 IFLDPNTPNAR 97
          IF DPN PNAR
Sbjct: 63 IFPDPNIPNAR 73

The following BLAST results are available for this feature:

BLAST of Lsi06G000440 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi06G000440 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A371II03	2.6e-33	72.92	Uncharacterized protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_00207 P...	[more]
Q2HP06	8.0e-19	74.24	Resistance protein Cre (Fragment) OS=Arachis hypogaea OX=3818 GN=CRE PE=4 SV=1	[more]
A0A5K1GZQ0	7.7e-14	62.32	Uncharacterized protein (Fragment) OS=Nymphaea colorata OX=210225 GN=NYM_LOCUS28...	[more]
A4QM48	9.5e-12	59.15	ORF73a OS=Pinus koraiensis OX=88728 PE=4 SV=1	[more]
A0A2P2NR92	7.5e-09	72.73	Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1	[more]

BLAST of Lsi06G000440 vs. NCBI nr


Match Name	E-value	Identity	Description
RDY14680.1	5.3e-33	72.92	hypothetical protein CR513_00207, partial [Mucuna pruriens]	[more]
AAX70975.1	1.7e-18	74.24	resistance protein Cre, partial [Arachis hypogaea] >AAX70978.1 resistance protei...	[more]
VVW82511.1	1.6e-13	62.32	unnamed protein product, partial [Nymphaea colorata]	[more]
ABP35385.1	2.0e-11	59.15	ORF73a [Pinus koraiensis]	[more]

BLAST of Lsi06G000440 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi06G000440.1	Lsi06G000440.1	mRNA