Lsi05G022210 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi05G022210
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionPhytocyanin domain-containing protein
Locationchr05: 28749230 .. 28749421 (+)
RNA-Seq ExpressionLsi05G022210
SyntenyLsi05G022210
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGATGAAAGCGGCCGCTGTTTTTTATGTTGTTTTGGTAGCGGTGCGGGCGGTTTATGGAGCAGATATCATCGTTGGCGGCAACTCTGGGTGGAACCAGGGGGTGAATTACGACAACTGGGCTGCACGACAGAGTTTTAGTGTTGGCGACGCATTAGGTAACTTCTTACCTTTTACAATACCAGCTTAA

mRNA sequence

ATGGCGATGAAAGCGGCCGCTGTTTTTTATGTTGTTTTGGTAGCGGTGCGGGCGGTTTATGGAGCAGATATCATCGTTGGCGGCAACTCTGGGTGGAACCAGGGGGTGAATTACGACAACTGGGCTGCACGACAGAGTTTTAGTGTTGGCGACGCATTAGGTAACTTCTTACCTTTTACAATACCAGCTTAA

Coding sequence (CDS)

ATGGCGATGAAAGCGGCCGCTGTTTTTTATGTTGTTTTGGTAGCGGTGCGGGCGGTTTATGGAGCAGATATCATCGTTGGCGGCAACTCTGGGTGGAACCAGGGGGTGAATTACGACAACTGGGCTGCACGACAGAGTTTTAGTGTTGGCGACGCATTAGGTAACTTCTTACCTTTTACAATACCAGCTTAA

Protein sequence

MAMKAAAVFYVVLVAVRAVYGADIIVGGNSGWNQGVNYDNWAARQSFSVGDALGNFLPFTIPA
Homology
[Close]
BLAST of Lsi05G022210 vs. ExPASy TrEMBL
Match: A0A0A0L6X5 (Phytocyanin domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G116790 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 5.1e-14
Identity = 45/53 (84.91%), Postives = 49/53 (92.45%), Query Frame = 0 

Query: 1  MAMKAAAVFYVVLVAVRAVYGADIIVGGNSGWNQGVNYDNWAARQSFSVGDAL 54
          MAMKAAAVF VVL+AVRAVYGADIIVGGNSGW+QGV+YD WAA Q F+VGDAL
Sbjct: 1  MAMKAAAVF-VVLIAVRAVYGADIIVGGNSGWSQGVDYDTWAAGQKFNVGDAL 52

[Close]
BLAST of Lsi05G022210 vs. ExPASy TrEMBL
Match: A0A1S4DSP9 (basic blue protein OS=Cucumis melo OX=3656 GN=LOC103483106 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.9e-13
Identity = 43/53 (81.13%), Postives = 47/53 (88.68%), Query Frame = 0 

Query: 1  MAMKAAAVFYVVLVAVRAVYGADIIVGGNSGWNQGVNYDNWAARQSFSVGDAL 54
          MAMKAAAVF VVL+AVRAVYGADIIVGG+SGWNQG NYD WA +Q F+VGD L
Sbjct: 1  MAMKAAAVF-VVLIAVRAVYGADIIVGGSSGWNQGFNYDTWATQQKFTVGDTL 52

[Close]
BLAST of Lsi05G022210 vs. ExPASy TrEMBL
Match: A0A6J1IDG2 (uclacyanin-3-like OS=Cucurbita maxima OX=3661 GN=LOC111472881 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 5.8e-10
Identity = 38/53 (71.70%), Postives = 42/53 (79.25%), Query Frame = 0 

Query: 1  MAMKAAAVFYVVLVAVRAVYGADIIVGGNSGWNQGVNYDNWAARQSFSVGDAL 54
          M MK A VF V LVAVRAVYGADI+VGG+SGWNQG +Y  WAA Q F VGD+L
Sbjct: 1  MVMKVAVVF-VFLVAVRAVYGADIVVGGDSGWNQGFDYGTWAAGQVFKVGDSL 52

[Close]
BLAST of Lsi05G022210 vs. ExPASy TrEMBL
Match: A0A6J1E2B3 (uclacyanin-3-like OS=Cucurbita moschata OX=3662 GN=LOC111430105 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.7e-09
Identity = 37/53 (69.81%), Postives = 43/53 (81.13%), Query Frame = 0 

Query: 1  MAMKAAAVFYVVLVAVRAVYGADIIVGGNSGWNQGVNYDNWAARQSFSVGDAL 54
          M MK A VF V LVAVRAV GADI+VGG+SGW+QG +YD WAA Q+F VGD+L
Sbjct: 1  MVMKVAVVF-VFLVAVRAVNGADIVVGGDSGWSQGFDYDTWAAGQAFKVGDSL 52

[Close]
BLAST of Lsi05G022210 vs. ExPASy TrEMBL
Match: A0A6J1IJY7 (uclacyanin-3-like OS=Cucurbita maxima OX=3661 GN=LOC111474381 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 2.2e-09
Identity = 37/53 (69.81%), Postives = 42/53 (79.25%), Query Frame = 0 

Query: 1  MAMKAAAVFYVVLVAVRAVYGADIIVGGNSGWNQGVNYDNWAARQSFSVGDAL 54
          M MK A VF V LVAVRAVYGADI+VGG+SGW+QG +Y  WAA Q F VGD+L
Sbjct: 1  MVMKVAVVF-VFLVAVRAVYGADIVVGGDSGWSQGFDYGTWAAGQVFKVGDSL 52

[Close]
BLAST of Lsi05G022210 vs. NCBI nr
Match: XP_038901117.1 (mavicyanin-like [Benincasa hispida])

HSP 1 Score: 87.0 bits (214), Expect = 6.2e-14
Identity = 46/53 (86.79%), Postives = 49/53 (92.45%), Query Frame = 0 

Query: 1  MAMKAAAVFYVVLVAVRAVYGADIIVGGNSGWNQGVNYDNWAARQSFSVGDAL 54
          MAMKAAAVF VVLVAVRAVYGADIIVGGNSGW+QGVNY+ WAA Q+FSVGD L
Sbjct: 1  MAMKAAAVF-VVLVAVRAVYGADIIVGGNSGWSQGVNYETWAAGQNFSVGDTL 52

[Close]
BLAST of Lsi05G022210 vs. NCBI nr
Match: XP_004133765.1 (uclacyanin-2 [Cucumis sativus] >KGN56342.1 hypothetical protein Csa_011244 [Cucumis sativus])

HSP 1 Score: 86.3 bits (212), Expect = 1.0e-13
Identity = 45/53 (84.91%), Postives = 49/53 (92.45%), Query Frame = 0 

Query: 1  MAMKAAAVFYVVLVAVRAVYGADIIVGGNSGWNQGVNYDNWAARQSFSVGDAL 54
          MAMKAAAVF VVL+AVRAVYGADIIVGGNSGW+QGV+YD WAA Q F+VGDAL
Sbjct: 1  MAMKAAAVF-VVLIAVRAVYGADIIVGGNSGWSQGVDYDTWAAGQKFNVGDAL 52

[Close]
BLAST of Lsi05G022210 vs. NCBI nr
Match: XP_016899016.1 (PREDICTED: basic blue protein [Cucumis melo])

HSP 1 Score: 84.3 bits (207), Expect = 4.0e-13
Identity = 43/53 (81.13%), Postives = 47/53 (88.68%), Query Frame = 0 

Query: 1  MAMKAAAVFYVVLVAVRAVYGADIIVGGNSGWNQGVNYDNWAARQSFSVGDAL 54
          MAMKAAAVF VVL+AVRAVYGADIIVGG+SGWNQG NYD WA +Q F+VGD L
Sbjct: 1  MAMKAAAVF-VVLIAVRAVYGADIIVGGSSGWNQGFNYDTWATQQKFTVGDTL 52

[Close]
BLAST of Lsi05G022210 vs. NCBI nr
Match: KAG6597011.1 (hypothetical protein SDJN03_10191, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 74.7 bits (182), Expect = 3.2e-10
Identity = 38/53 (71.70%), Postives = 44/53 (83.02%), Query Frame = 0 

Query: 1  MAMKAAAVFYVVLVAVRAVYGADIIVGGNSGWNQGVNYDNWAARQSFSVGDAL 54
          M MK A VF V LVAVRAVYGADI+VGG+SGW+QG +YD WAA Q+F VGD+L
Sbjct: 23 MVMKVAVVF-VFLVAVRAVYGADIVVGGDSGWSQGFDYDTWAAGQTFKVGDSL 74

[Close]
BLAST of Lsi05G022210 vs. NCBI nr
Match: XP_023540572.1 (mavicyanin-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 74.7 bits (182), Expect = 3.2e-10
Identity = 38/53 (71.70%), Postives = 44/53 (83.02%), Query Frame = 0 

Query: 1  MAMKAAAVFYVVLVAVRAVYGADIIVGGNSGWNQGVNYDNWAARQSFSVGDAL 54
          M MK A VF V LVAVRAVYGADI+VGG+SGW+QG +YD WAA Q+F VGD+L
Sbjct: 1  MVMKVAVVF-VFLVAVRAVYGADIVVGGDSGWSQGFDYDTWAAGQAFKVGDSL 52

[Close]
BLAST of Lsi05G022210 vs. TAIR 10
Match: AT3G27200.1 (Cupredoxin superfamily protein )

HSP 1 Score: 45.1 bits (105), Expect = 2.5e-05
Identity = 22/55 (40.00%), Postives = 35/55 (63.64%), Query Frame = 0 

Query: 1  MAMKAAAVFYVV--LVAVRAVYGADIIVGGNSGWNQGVNYDNWAARQSFSVGDAL 54
          M M+A  V  V   L++V+    A  ++GG+ GW Q V++D+W++ QSF VGD +
Sbjct: 1  MKMQAVLVILVFSGLLSVKTALAARHVIGGSQGWEQSVDFDSWSSDQSFKVGDQI 55

[Close]
BLAST of Lsi05G022210 vs. TAIR 10
Match: AT3G60270.1 (Cupredoxin superfamily protein )

HSP 1 Score: 44.3 bits (103), Expect = 4.3e-05
Identity = 21/48 (43.75%), Postives = 29/48 (60.42%), Query Frame = 0 

Query: 6  AAVFYVVLVAVRAVYGADIIVGGNSGWNQGVNYDNWAARQSFSVGDAL 54
          A +  ++LVAV AV+     VG N GW  GV Y +W + ++F VGD L
Sbjct: 8  ALLLLLLLVAVPAVFAVTFQVGDNDGWTIGVEYTSWVSEKTFRVGDTL 55

The following BLAST results are available for this feature:
BLAST of Lsi05G022210 vs.
Match NameE-valueIdentityDescription
BLAST of Lsi05G022210 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L6X55.1e-1484.91Phytocyanin domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G116790... [more]
A0A1S4DSP91.9e-1381.13basic blue protein OS=Cucumis melo OX=3656 GN=LOC103483106 PE=4 SV=1[more]
A0A6J1IDG25.8e-1071.70uclacyanin-3-like OS=Cucurbita maxima OX=3661 GN=LOC111472881 PE=4 SV=1[more]
A0A6J1E2B31.7e-0969.81uclacyanin-3-like OS=Cucurbita moschata OX=3662 GN=LOC111430105 PE=4 SV=1[more]
A0A6J1IJY72.2e-0969.81uclacyanin-3-like OS=Cucurbita maxima OX=3661 GN=LOC111474381 PE=4 SV=1[more]
BLAST of Lsi05G022210 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038901117.16.2e-1486.79mavicyanin-like [Benincasa hispida][more]
XP_004133765.11.0e-1384.91uclacyanin-2 [Cucumis sativus] >KGN56342.1 hypothetical protein Csa_011244 [Cucu... [more]
XP_016899016.14.0e-1381.13PREDICTED: basic blue protein [Cucumis melo][more]
KAG6597011.13.2e-1071.70hypothetical protein SDJN03_10191, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_023540572.13.2e-1071.70mavicyanin-like [Cucurbita pepo subsp. pepo][more]
BLAST of Lsi05G022210 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G27200.12.5e-0540.00Cupredoxin superfamily protein [more]
AT3G60270.14.3e-0543.75Cupredoxin superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008972CupredoxinGENE3D2.60.40.420coord: 20..60
e-value: 1.3E-6
score: 30.6
IPR008972CupredoxinSUPERFAMILY49503Cupredoxinscoord: 21..53
IPR003245Phytocyanin domainPROSITEPS51485PHYTOCYANINcoord: 22..63
score: 13.825751

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi05G022210.1Lsi05G022210.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0022900 electron transport chain
cellular_component GO:0046658 anchored component of plasma membrane
molecular_function GO:0009055 electron transfer activity