Lsi05G022010 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi05G022010
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Late cornified envelope protein 1E
Location	chr05: 28577295 .. 28577966 (-)
RNA-Seq Expression	Lsi05G022010
Synteny	Lsi05G022010

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTTGAATCGCCCACTCTGCTGCTTGTGTGGCGACGTTGGTTTTCCAGCGAAACTCTTCCGCTGCCTTGATTGCTCCAATCGATTTCAGCACTCGTAAGACCGTCTTTTGTTTTAATTTATTAGGCTATGATACTATGTTAGATGTTGTATTATCTTAAACTTACATATTTTGGTAGTTCAGTTACTGCAGCAACTACTACTGTGGGGAATCGGGGGATGCAATAGTTCAAGTATGCGATTGGTGTCGAAGTGAACAGAGAACCCACCGTCCTGCCTCTGCAACTGCGAATAATAATAGTGGTACTATGTCCCACAAGGATCATAAAATCACTGATCAAATTACACAAATAAGAAGCTCCGGCGCCGGACTGCCTTCGTCTCGCCCTGCTCCACGCCGATACAAGCTTCTCAAGGATGTCATGTGTTAGAAACTTTTCCATCAACCCCCAACAAACCAAATACTTTTTCAATTTTCATTTTCTTATTTACATATATGCACCTATATCATCTTAATTAATATAATCCTGTATGTGTATGTCGCCTTTCAAAATTAAATTATCCACAACATAAGATGGTTCTCTGTATTTTATAATCAAGGCATTTTCAATTACTTCAACCTTTTTAATGCATTCGTTTGCTCTTGAAATAATCTGAATATATATTCAAC

mRNA sequence

ATGGATTTGAATCGCCCACTCTGCTGCTTGTGTGGCGACGTTGGTTTTCCAGCGAAACTCTTCCGCTGCCTTGATTGCTCCAATCGATTTCAGCACTCTTACTGCAGCAACTACTACTGTGGGGAATCGGGGGATGCAATAGTTCAAGTATGCGATTGGTGTCGAAGTGAACAGAGAACCCACCGTCCTGCCTCTGCAACTGCGAATAATAATAGTGGTACTATGTCCCACAAGGATCATAAAATCACTGATCAAATTACACAAATAAGAAGCTCCGGCGCCGGACTGCCTTCGTCTCGCCCTGCTCCACGCCGATACAAGCTTCTCAAGGATGTCATGTGTTAGAAACTTTTCCATCAACCCCCAACAAACCAAATACTTTTTCAATTTTCATTTTCTTATTTACATATATGCACCTATATCATCTTAATTAATATAATCCTGTATGTGTATGTCGCCTTTCAAAATTAAATTATCCACAACATAAGATGGTTCTCTGTATTTTATAATCAAGGCATTTTCAATTACTTCAACCTTTTTAATGCATTCGTTTGCTCTTGAAATAATCTGAATATATATTCAAC

Coding sequence (CDS)

ATGGATTTGAATCGCCCACTCTGCTGCTTGTGTGGCGACGTTGGTTTTCCAGCGAAACTCTTCCGCTGCCTTGATTGCTCCAATCGATTTCAGCACTCTTACTGCAGCAACTACTACTGTGGGGAATCGGGGGATGCAATAGTTCAAGTATGCGATTGGTGTCGAAGTGAACAGAGAACCCACCGTCCTGCCTCTGCAACTGCGAATAATAATAGTGGTACTATGTCCCACAAGGATCATAAAATCACTGATCAAATTACACAAATAAGAAGCTCCGGCGCCGGACTGCCTTCGTCTCGCCCTGCTCCACGCCGATACAAGCTTCTCAAGGATGTCATGTGTTAG

Protein sequence

MDLNRPLCCLCGDVGFPAKLFRCLDCSNRFQHSYCSNYYCGESGDAIVQVCDWCRSEQRTHRPASATANNNSGTMSHKDHKITDQITQIRSSGAGLPSSRPAPRRYKLLKDVMC

Homology

[Close]

BLAST of Lsi05G022010 vs. ExPASy TrEMBL
Match: A0A6J1ED69 (uncharacterized protein LOC111432109 OS=Cucurbita moschata OX=3662 GN=LOC111432109 PE=4 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 2.7e-45
Identity = 85/114 (74.56%), Postives = 95/114 (83.33%), Query Frame = 0


Query: 1   MDLNRPLCCLCGDVGFPAKLFRCLDCSNRFQHSYCSNYYCGESGDAIVQVCDWCRSEQRT 60
           MDLNRPLCCLCGDVGFPAKLFRC +CSNRFQHSYCSN+YCGES D I ++CDWCR+E  T
Sbjct: 1   MDLNRPLCCLCGDVGFPAKLFRCANCSNRFQHSYCSNFYCGESADPITRLCDWCRTEHTT 60

Query: 61  HRPASATANNNSGTMSHKDHKITDQITQIRSSGAGLPSSRPAPRRYKLLKDVMC 115
            RP+ A ANN  G  S K HK+TDQIT+ +SS  G+PS RPAPRRYKLLKDVMC
Sbjct: 61  RRPSPAAANN--GATSQKPHKMTDQITETKSSATGVPSPRPAPRRYKLLKDVMC 112

[Close]

BLAST of Lsi05G022010 vs. ExPASy TrEMBL
Match: A0A5D3DB67 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold291G00440 PE=4 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 2.1e-42
Identity = 87/114 (76.32%), Postives = 92/114 (80.70%), Query Frame = 0


Query: 1   MDLNRPLCCLCGDVGFPAKLFRCLDCSNRFQHSYCSNYYCGESGDAIVQVCDWCRSEQRT 60
           MDLN PLCCLCGDVGFPA LFRC +CSNRFQHSYCSNYY GESGDAI++VCDWCRSEQRT
Sbjct: 1   MDLNPPLCCLCGDVGFPANLFRCTNCSNRFQHSYCSNYYSGESGDAIIRVCDWCRSEQRT 60

Query: 61  HRPASATANNNSGTMSHKDHKITDQITQIRSSGAGLPSSRPAPRRYKLLKDVMC 115
            RPA+        T S KD K    IT+IRSS AGLPS RPAPRRYKLLKDVMC
Sbjct: 61  RRPAAFAT-----TTSQKDRK----ITEIRSSAAGLPSPRPAPRRYKLLKDVMC 105

[Close]

BLAST of Lsi05G022010 vs. ExPASy TrEMBL
Match: A0A1S3AVF1 (uncharacterized protein LOC103483122 OS=Cucumis melo OX=3656 GN=LOC103483122 PE=4 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 2.1e-42
Identity = 87/114 (76.32%), Postives = 92/114 (80.70%), Query Frame = 0


Query: 1   MDLNRPLCCLCGDVGFPAKLFRCLDCSNRFQHSYCSNYYCGESGDAIVQVCDWCRSEQRT 60
           MDLN PLCCLCGDVGFPA LFRC +CSNRFQHSYCSNYY GESGDAI++VCDWCRSEQRT
Sbjct: 41  MDLNPPLCCLCGDVGFPANLFRCTNCSNRFQHSYCSNYYSGESGDAIIRVCDWCRSEQRT 100

Query: 61  HRPASATANNNSGTMSHKDHKITDQITQIRSSGAGLPSSRPAPRRYKLLKDVMC 115
            RPA+        T S KD K    IT+IRSS AGLPS RPAPRRYKLLKDVMC
Sbjct: 101 RRPAAFAT-----TTSQKDRK----ITEIRSSAAGLPSPRPAPRRYKLLKDVMC 145

[Close]

BLAST of Lsi05G022010 vs. ExPASy TrEMBL
Match: A0A0A0L5P1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G117940 PE=4 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 4.7e-42
Identity = 86/114 (75.44%), Postives = 93/114 (81.58%), Query Frame = 0


Query: 1   MDLNRPLCCLCGDVGFPAKLFRCLDCSNRFQHSYCSNYYCGESGDAIVQVCDWCRSEQRT 60
           MDLN PLCCLCGDVGFPAKLFRC +CSNRFQHSYCSNYYCGESGDA ++VCDWCRSEQRT
Sbjct: 1   MDLNPPLCCLCGDVGFPAKLFRCTNCSNRFQHSYCSNYYCGESGDATIRVCDWCRSEQRT 60

Query: 61  HRPASATANNNSGTMSHKDHKITDQITQIRSSGAGLPSSRPAPRRYKLLKDVMC 115
            RPA A+      T S K +KIT++    RSS  GLPS RPAPRRYKLLKDVMC
Sbjct: 61  CRPAFAS------TTSQKSNKITER----RSSAVGLPSPRPAPRRYKLLKDVMC 104

[Close]

BLAST of Lsi05G022010 vs. ExPASy TrEMBL
Match: A0A6J1IH20 (uncharacterized protein LOC111472884 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111472884 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 9.5e-27
Identity = 70/109 (64.22%), Postives = 79/109 (72.48%), Query Frame = 0


Query: 6   PLCCLCGDVGFPAKLFRCLDCSNRFQHSYCSNYYCGESGDAIVQVCDWCRSEQRTHRPAS 65
           P+CCLCGDVGFPA LFRC  CS+RFQHSYCSNYY GES +AI +VCDWCR E+R  R  S
Sbjct: 17  PVCCLCGDVGFPANLFRCTLCSHRFQHSYCSNYY-GESAEAI-EVCDWCRCERRCGRRGS 76

Query: 66  ATANNNSGTMSHKDHKITDQITQIRSSGAGLPSSRPAPRRYKLLKDVMC 115
           A      G  S K  K + Q  + R+SG G+PS R APRRYKLLKDVMC
Sbjct: 77  AA--RKFGVASQK--KSSGQDKRERNSG-GMPSPRVAPRRYKLLKDVMC 118

[Close]

BLAST of Lsi05G022010 vs. NCBI nr
Match: XP_023526855.1 (uncharacterized protein LOC111790233 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 191.8 bits (486), Expect = 3.2e-45
Identity = 86/114 (75.44%), Postives = 94/114 (82.46%), Query Frame = 0


Query: 1   MDLNRPLCCLCGDVGFPAKLFRCLDCSNRFQHSYCSNYYCGESGDAIVQVCDWCRSEQRT 60
           MDLNRPLCCLCGDVGFPAKLFRC +CSNRFQHSYCSN+YCGES D I ++CDWCR+E  T
Sbjct: 1   MDLNRPLCCLCGDVGFPAKLFRCANCSNRFQHSYCSNFYCGESADPITRLCDWCRTEHTT 60

Query: 61  HRPASATANNNSGTMSHKDHKITDQITQIRSSGAGLPSSRPAPRRYKLLKDVMC 115
            RP  A ANN  G  S K HKITDQIT+ +SS  G+PS RPAPRRYKLLKDVMC
Sbjct: 61  RRPGPAAANN--GATSQKPHKITDQITETKSSATGVPSPRPAPRRYKLLKDVMC 112

[Close]

BLAST of Lsi05G022010 vs. NCBI nr
Match: XP_022924678.1 (uncharacterized protein LOC111432109 [Cucurbita moschata])

HSP 1 Score: 191.0 bits (484), Expect = 5.5e-45
Identity = 85/114 (74.56%), Postives = 95/114 (83.33%), Query Frame = 0


Query: 1   MDLNRPLCCLCGDVGFPAKLFRCLDCSNRFQHSYCSNYYCGESGDAIVQVCDWCRSEQRT 60
           MDLNRPLCCLCGDVGFPAKLFRC +CSNRFQHSYCSN+YCGES D I ++CDWCR+E  T
Sbjct: 1   MDLNRPLCCLCGDVGFPAKLFRCANCSNRFQHSYCSNFYCGESADPITRLCDWCRTEHTT 60

Query: 61  HRPASATANNNSGTMSHKDHKITDQITQIRSSGAGLPSSRPAPRRYKLLKDVMC 115
            RP+ A ANN  G  S K HK+TDQIT+ +SS  G+PS RPAPRRYKLLKDVMC
Sbjct: 61  RRPSPAAANN--GATSQKPHKMTDQITETKSSATGVPSPRPAPRRYKLLKDVMC 112

[Close]

BLAST of Lsi05G022010 vs. NCBI nr
Match: XP_038904003.1 (uncharacterized protein LOC120090420 [Benincasa hispida])

HSP 1 Score: 186.8 bits (473), Expect = 1.0e-43
Identity = 88/115 (76.52%), Postives = 94/115 (81.74%), Query Frame = 0


Query: 1   MDLNRPLCCLCGDVGFPAKLFRCLDCSNRFQHSYCSNYYCGESGDAIVQVCDWCRSEQRT 60
           MD NRPLCCLCGDVGF A LFRC +CSNRFQHSYCSNYYCGESGDA ++VCDWCRS+QRT
Sbjct: 1   MDFNRPLCCLCGDVGFSAHLFRCSNCSNRFQHSYCSNYYCGESGDATIKVCDWCRSDQRT 60

Query: 61  HRPASATANNNSGTMSHKDHKITD-QITQIRSSGAGLPSSRPAPRRYKLLKDVMC 115
            RP SAT          KDHKI+D QIT+ RSS AGLPS RPAPRRYKLLKDVMC
Sbjct: 61  RRPGSATT-------PQKDHKISDNQITERRSSAAGLPSPRPAPRRYKLLKDVMC 108

[Close]

BLAST of Lsi05G022010 vs. NCBI nr
Match: XP_008437789.1 (PREDICTED: uncharacterized protein LOC103483122 [Cucumis melo])

HSP 1 Score: 181.4 bits (459), Expect = 4.3e-42
Identity = 87/114 (76.32%), Postives = 92/114 (80.70%), Query Frame = 0


Query: 1   MDLNRPLCCLCGDVGFPAKLFRCLDCSNRFQHSYCSNYYCGESGDAIVQVCDWCRSEQRT 60
           MDLN PLCCLCGDVGFPA LFRC +CSNRFQHSYCSNYY GESGDAI++VCDWCRSEQRT
Sbjct: 41  MDLNPPLCCLCGDVGFPANLFRCTNCSNRFQHSYCSNYYSGESGDAIIRVCDWCRSEQRT 100

Query: 61  HRPASATANNNSGTMSHKDHKITDQITQIRSSGAGLPSSRPAPRRYKLLKDVMC 115
            RPA+        T S KD K    IT+IRSS AGLPS RPAPRRYKLLKDVMC
Sbjct: 101 RRPAAFAT-----TTSQKDRK----ITEIRSSAAGLPSPRPAPRRYKLLKDVMC 145

[Close]

BLAST of Lsi05G022010 vs. NCBI nr
Match: KAA0048831.1 (uncharacterized protein E6C27_scaffold171G00440 [Cucumis melo var. makuwa] >TYK20783.1 uncharacterized protein E5676_scaffold291G00440 [Cucumis melo var. makuwa])

HSP 1 Score: 181.4 bits (459), Expect = 4.3e-42
Identity = 87/114 (76.32%), Postives = 92/114 (80.70%), Query Frame = 0


Query: 1   MDLNRPLCCLCGDVGFPAKLFRCLDCSNRFQHSYCSNYYCGESGDAIVQVCDWCRSEQRT 60
           MDLN PLCCLCGDVGFPA LFRC +CSNRFQHSYCSNYY GESGDAI++VCDWCRSEQRT
Sbjct: 1   MDLNPPLCCLCGDVGFPANLFRCTNCSNRFQHSYCSNYYSGESGDAIIRVCDWCRSEQRT 60

Query: 61  HRPASATANNNSGTMSHKDHKITDQITQIRSSGAGLPSSRPAPRRYKLLKDVMC 115
            RPA+        T S KD K    IT+IRSS AGLPS RPAPRRYKLLKDVMC
Sbjct: 61  RRPAAFAT-----TTSQKDRK----ITEIRSSAAGLPSPRPAPRRYKLLKDVMC 105

[Close]

BLAST of Lsi05G022010 vs. TAIR 10
Match: AT3G60520.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G02070.1); Has 107 Blast hits to 107 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 107; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 113.2 bits (282), Expect = 1.4e-25
Identity = 63/130 (48.46%), Postives = 76/130 (58.46%), Query Frame = 0


Query: 1   MDLNRPLCCLCGDVGFPAKLFRCLDCSNRFQHSYCSNYYCGESGDAIVQVCDWCRSEQRT 60
           +DL R +CC+CGDVGF  KLF C  C NRFQHSYCS+YY  E  D I ++CDWC+ E ++
Sbjct: 2   VDLERRVCCMCGDVGFFDKLFHCSKCLNRFQHSYCSSYY-KEQADPI-KICDWCQCEAKS 61

Query: 61  HRPASATANNNSGTMSHKD------HKITDQ-ITQIRSSG---------AGLPSSRPAPR 115
              A    N  S   S++       H+I  Q I Q  SS           G+PS RPA R
Sbjct: 62  RTGAKHGVNGGSSKRSYRSEYSSPHHQIKQQEINQTTSSSIPPAADKGKTGVPSPRPATR 121

[Close]

BLAST of Lsi05G022010 vs. TAIR 10
Match: AT1G02070.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G60520.1); Has 98 Blast hits to 98 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 98; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 95.1 bits (235), Expect = 3.8e-20
Identity = 51/130 (39.23%), Postives = 70/130 (53.85%), Query Frame = 0


Query: 7   LCCLCGDVGFPAKLFRCLDCSNRFQHSYCSNYYCGESGDAIVQVCDWCRSEQR------- 66
           +CC+CGDVGF  KLF C  C  RFQHSYCSNYY G+  +   ++CDWCRS+ R       
Sbjct: 4   VCCMCGDVGFSDKLFSCGHCRCRFQHSYCSNYY-GQFAEP-TEICDWCRSDDRKLSNVAR 63

Query: 67  -----THRPASATANNNSGT----------MSHKDHKITDQITQIRSSGAGLPSSRPAPR 115
                + +P+S+    N  +          + H +++       +   G G+ S + A R
Sbjct: 64  HGGSSSKKPSSSVKYENDFSNRSEYSPGHRIKHNNNRHDQVAKGVAGDGGGVTSPKTATR 123

The following BLAST results are available for this feature:

BLAST of Lsi05G022010 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi05G022010 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1ED69	2.7e-45	74.56	uncharacterized protein LOC111432109 OS=Cucurbita moschata OX=3662 GN=LOC1114321...	[more]
A0A5D3DB67	2.1e-42	76.32	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3AVF1	2.1e-42	76.32	uncharacterized protein LOC103483122 OS=Cucumis melo OX=3656 GN=LOC103483122 PE=...	[more]
A0A0A0L5P1	4.7e-42	75.44	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G117940 PE=4 SV=1	[more]
A0A6J1IH20	9.5e-27	64.22	uncharacterized protein LOC111472884 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]

BLAST of Lsi05G022010 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023526855.1	3.2e-45	75.44	uncharacterized protein LOC111790233 [Cucurbita pepo subsp. pepo]	[more]
XP_022924678.1	5.5e-45	74.56	uncharacterized protein LOC111432109 [Cucurbita moschata]	[more]
XP_038904003.1	1.0e-43	76.52	uncharacterized protein LOC120090420 [Benincasa hispida]	[more]
XP_008437789.1	4.3e-42	76.32	PREDICTED: uncharacterized protein LOC103483122 [Cucumis melo]	[more]
KAA0048831.1	4.3e-42	76.32	uncharacterized protein E6C27_scaffold171G00440 [Cucumis melo var. makuwa] >TYK2...	[more]

BLAST of Lsi05G022010 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G60520.1	1.4e-25	48.46	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G02070.1	3.8e-20	39.23	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 112..114
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 60..76
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 60..83
None	No IPR available	PANTHER	PTHR33779:SF11	OS02G0658200 PROTEIN	coord: 6..114
None	No IPR available	PANTHER	PTHR33779	EXPRESSED PROTEIN	coord: 6..114

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi05G022010.1	Lsi05G022010.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding