Lsi05G021710 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi05G021710
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Unknown protein
Location	chr05: 28387626 .. 28388000 (-)
RNA-Seq Expression	Lsi05G021710
Synteny	Lsi05G021710

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATCAAACATGGAGATTTGCAAAGGGTGGAGATGAAGAAGCTGGATTTGCGATGGAGTCAGCAATGAAAGAAGAAGAGAGAGATGAGAAGAGGAATGGGAATATGAAGAGTTATAAGACAGCAACTTGCGTGGTTTCAATGGTAGTGGCATGCCTGATGGGAGGGCTTGTTTTTGGTTGGTGGGTGTTTCAGTTTCATCCAACAAATAGACAACTATGGATGGTACCTTTTAGTCTTATTTTGATGATTGCACCCATATTTGTTTTGATGTCTCTTCTCATCAATGCTTTCTGCACTTCCATGGATCACAATACTACTTCTGCAGCTCCATCCTCAGACCATGGCATCCAACAATCTGTTCAAATTGGATGA

mRNA sequence

ATGGATCAAACATGGAGATTTGCAAAGGGTGGAGATGAAGAAGCTGGATTTGCGATGGAGTCAGCAATGAAAGAAGAAGAGAGAGATGAGAAGAGGAATGGGAATATGAAGAGTTATAAGACAGCAACTTGCGTGGTTTCAATGGTAGTGGCATGCCTGATGGGAGGGCTTGTTTTTGGTTGGTGGGTGTTTCAGTTTCATCCAACAAATAGACAACTATGGATGGTACCTTTTAGTCTTATTTTGATGATTGCACCCATATTTGTTTTGATGTCTCTTCTCATCAATGCTTTCTGCACTTCCATGGATCACAATACTACTTCTGCAGCTCCATCCTCAGACCATGGCATCCAACAATCTGTTCAAATTGGATGA

Coding sequence (CDS)

ATGGATCAAACATGGAGATTTGCAAAGGGTGGAGATGAAGAAGCTGGATTTGCGATGGAGTCAGCAATGAAAGAAGAAGAGAGAGATGAGAAGAGGAATGGGAATATGAAGAGTTATAAGACAGCAACTTGCGTGGTTTCAATGGTAGTGGCATGCCTGATGGGAGGGCTTGTTTTTGGTTGGTGGGTGTTTCAGTTTCATCCAACAAATAGACAACTATGGATGGTACCTTTTAGTCTTATTTTGATGATTGCACCCATATTTGTTTTGATGTCTCTTCTCATCAATGCTTTCTGCACTTCCATGGATCACAATACTACTTCTGCAGCTCCATCCTCAGACCATGGCATCCAACAATCTGTTCAAATTGGATGA

Protein sequence

MDQTWRFAKGGDEEAGFAMESAMKEEERDEKRNGNMKSYKTATCVVSMVVACLMGGLVFGWWVFQFHPTNRQLWMVPFSLILMIAPIFVLMSLLINAFCTSMDHNTTSAAPSSDHGIQQSVQIG

Homology

[Close]

BLAST of Lsi05G021710 vs. ExPASy TrEMBL
Match: A0A0A0L5S1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G118200 PE=4 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 3.2e-52
Identity = 106/122 (86.89%), Postives = 113/122 (92.62%), Query Frame = 0


Query: 1   MDQTWRFAKGGDEEAGFAMESAMKEEERDEKRNGNMKSYKTATCVVSMVVACLMGGLVFG 60
           MDQTWRFA+GGDEEAGF MESAMKEE+RD+KRNGNMKS K AT V+SMVVACL GGLVFG
Sbjct: 1   MDQTWRFARGGDEEAGFPMESAMKEEDRDKKRNGNMKSCKIATWVISMVVACLTGGLVFG 60

Query: 61  WWVFQFHPTNRQLWMVPFSLILMIAPIFVLMSLLINAFCTSMDHNTTSAAPSSDHGIQQS 120
           WWVFQFHPTNRQLWMVPFSL+LMIAPIFV+MSLLI+AFC SMD  TTSAAPSSDH IQQS
Sbjct: 61  WWVFQFHPTNRQLWMVPFSLVLMIAPIFVMMSLLISAFCNSMDQTTTSAAPSSDHVIQQS 120

Query: 121 VQ 123
           VQ
Sbjct: 121 VQ 122

[Close]

BLAST of Lsi05G021710 vs. ExPASy TrEMBL
Match: A0A0A0L8F5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G118220 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 3.2e-12
Identity = 46/102 (45.10%), Postives = 64/102 (62.75%), Query Frame = 0


Query: 14  EAGFAMESAMKEEERDEKRNGNMKSYKTATCVVSMVVACLMGGLVFGWWVFQFHPTNRQL 73
           + G  +E  MK  E ++K+  N K      CVV +V+  + G  + GWW  +FH + +Q 
Sbjct: 2   QVGIEIEDVMK-GEGEQKKQKNRKLKAVWGCVV-LVLVSVSGAFLMGWWAVRFHRSQKQQ 61

Query: 74  WMVPFSLILMIAPIFVLMSLLINAFCTSMDHNTTSAAPSSDH 116
           WMVPFSL+LMIAPIFVL+S+ I++FC SMD   +S   S DH
Sbjct: 62  WMVPFSLVLMIAPIFVLISVSISSFCNSMD-RISSLVSSLDH 100

[Close]

BLAST of Lsi05G021710 vs. ExPASy TrEMBL
Match: A0A5D3DB24 (Putative permease/transmembrane protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold291G00680 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 5.5e-12
Identity = 46/102 (45.10%), Postives = 64/102 (62.75%), Query Frame = 0


Query: 14  EAGFAMESAMKEEERDEKRNGNMKSYKTATCVVSMVVACLMGGLVFGWWVFQFHPTNRQL 73
           + G  +E  MK  E ++K+  N K      CVV +V+  + G  + GWW  +FH + +Q 
Sbjct: 2   QVGTEIEDVMK-GEGEQKKQKNRKLKAVWGCVV-LVLVSVSGAFLMGWWAVRFHRSQKQQ 61

Query: 74  WMVPFSLILMIAPIFVLMSLLINAFCTSMDHNTTSAAPSSDH 116
           WMVPFSL+LMIAPIFVL+S+ I++FC SMD   +S   S DH
Sbjct: 62  WMVPFSLVLMIAPIFVLISVSISSFCNSMD-RISSLVSSLDH 100

[Close]

BLAST of Lsi05G021710 vs. ExPASy TrEMBL
Match: A0A6A1W5X8 (Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR3G019179 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 1.8e-10
Identity = 33/77 (42.86%), Postives = 52/77 (67.53%), Query Frame = 0


Query: 25  EEERDEKRNGNMKSYKTATCVVSMVVACLMGGLVFGWWVFQFHPTNRQLWMVPFSLILMI 84
           +EE+DE +    +  K        ++ C++GGL  G+W F++HPTNRQLWMVPF LIL++
Sbjct: 5   KEEKDESQREYKERVKKFIIYSWALMVCMIGGLTLGYWEFEYHPTNRQLWMVPFGLILLV 64

Query: 85  APIFVLMSLLINAFCTS 102
            P+FV  S++++  C+S
Sbjct: 65  TPLFVWFSIVVSDVCSS 81

[Close]

BLAST of Lsi05G021710 vs. ExPASy TrEMBL
Match: A0A2N9FJR8 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS18938 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 3.0e-10
Identity = 37/88 (42.05%), Postives = 53/88 (60.23%), Query Frame = 0


Query: 25  EEERDEKRNGNMKSYKTATCVVSMVVACLMGGLVFGWWVFQFHPTNRQLWMVPFSLILMI 84
           +E RDE      +  KT        +  ++GGL F WW F++HPTN QLWMVPFSLIL++
Sbjct: 5   KEGRDESHKEQKERVKTCIVYSWSFMVSMIGGLAFTWWEFEYHPTNTQLWMVPFSLILLV 64

Query: 85  APIFVLMSLLINAFCTS-MDHNTTSAAP 112
            P+FV  S+ ++  C+S MD    ++ P
Sbjct: 65  TPLFVWFSIFVSDLCSSKMDDVPKASQP 92

[Close]

BLAST of Lsi05G021710 vs. NCBI nr
Match: KGN56384.1 (hypothetical protein Csa_011278 [Cucumis sativus])

HSP 1 Score: 214.2 bits (544), Expect = 6.6e-52
Identity = 106/122 (86.89%), Postives = 113/122 (92.62%), Query Frame = 0


Query: 1   MDQTWRFAKGGDEEAGFAMESAMKEEERDEKRNGNMKSYKTATCVVSMVVACLMGGLVFG 60
           MDQTWRFA+GGDEEAGF MESAMKEE+RD+KRNGNMKS K AT V+SMVVACL GGLVFG
Sbjct: 1   MDQTWRFARGGDEEAGFPMESAMKEEDRDKKRNGNMKSCKIATWVISMVVACLTGGLVFG 60

Query: 61  WWVFQFHPTNRQLWMVPFSLILMIAPIFVLMSLLINAFCTSMDHNTTSAAPSSDHGIQQS 120
           WWVFQFHPTNRQLWMVPFSL+LMIAPIFV+MSLLI+AFC SMD  TTSAAPSSDH IQQS
Sbjct: 61  WWVFQFHPTNRQLWMVPFSLVLMIAPIFVMMSLLISAFCNSMDQTTTSAAPSSDHVIQQS 120

Query: 121 VQ 123
           VQ
Sbjct: 121 VQ 122

[Close]

BLAST of Lsi05G021710 vs. NCBI nr
Match: KAG6582696.1 (hypothetical protein SDJN03_22698, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 126.3 bits (316), Expect = 1.8e-25
Identity = 76/128 (59.38%), Postives = 87/128 (67.97%), Query Frame = 0


Query: 3   QTWRFAKGGDEEAGFAMESAMKEEERDEKRNGNMKSYKTATCVVSMVVACLMGGLVFGWW 62
           +TW FA GG EEAG  MESAMKE         NMKS K AT VVSM V  ++GG+VFGWW
Sbjct: 4   KTWGFA-GGGEEAGQPMESAMKE---------NMKSCKMATWVVSMAVTSMVGGVVFGWW 63

Query: 63  VFQFHPTNRQLWMVPFSLILMIAPIFVLMSLLINAF------CTSMDHNTTSAAPSSDHG 122
            F+FHPTNRQLWMVPF LILM  P+FV+MSLLI+AF       TSMD N  + A      
Sbjct: 64  EFRFHPTNRQLWMVPFGLILMTTPMFVIMSLLISAFMDQPISMTSMDQNQNTTA------ 115

Query: 123 IQQSVQIG 125
           I++SVQIG
Sbjct: 124 IKKSVQIG 115

[Close]

BLAST of Lsi05G021710 vs. NCBI nr
Match: KGN56386.1 (hypothetical protein Csa_010779 [Cucumis sativus])

HSP 1 Score: 81.3 bits (199), Expect = 6.6e-12
Identity = 46/102 (45.10%), Postives = 64/102 (62.75%), Query Frame = 0


Query: 14  EAGFAMESAMKEEERDEKRNGNMKSYKTATCVVSMVVACLMGGLVFGWWVFQFHPTNRQL 73
           + G  +E  MK  E ++K+  N K      CVV +V+  + G  + GWW  +FH + +Q 
Sbjct: 2   QVGIEIEDVMK-GEGEQKKQKNRKLKAVWGCVV-LVLVSVSGAFLMGWWAVRFHRSQKQQ 61

Query: 74  WMVPFSLILMIAPIFVLMSLLINAFCTSMDHNTTSAAPSSDH 116
           WMVPFSL+LMIAPIFVL+S+ I++FC SMD   +S   S DH
Sbjct: 62  WMVPFSLVLMIAPIFVLISVSISSFCNSMD-RISSLVSSLDH 100

[Close]

BLAST of Lsi05G021710 vs. NCBI nr
Match: KAA0048855.1 (putative permease/transmembrane protein [Cucumis melo var. makuwa] >TYK20807.1 putative permease/transmembrane protein [Cucumis melo var. makuwa])

HSP 1 Score: 80.5 bits (197), Expect = 1.1e-11
Identity = 46/102 (45.10%), Postives = 64/102 (62.75%), Query Frame = 0


Query: 14  EAGFAMESAMKEEERDEKRNGNMKSYKTATCVVSMVVACLMGGLVFGWWVFQFHPTNRQL 73
           + G  +E  MK  E ++K+  N K      CVV +V+  + G  + GWW  +FH + +Q 
Sbjct: 2   QVGTEIEDVMK-GEGEQKKQKNRKLKAVWGCVV-LVLVSVSGAFLMGWWAVRFHRSQKQQ 61

Query: 74  WMVPFSLILMIAPIFVLMSLLINAFCTSMDHNTTSAAPSSDH 116
           WMVPFSL+LMIAPIFVL+S+ I++FC SMD   +S   S DH
Sbjct: 62  WMVPFSLVLMIAPIFVLISVSISSFCNSMD-RISSLVSSLDH 100

[Close]

BLAST of Lsi05G021710 vs. NCBI nr
Match: KAB1219726.1 (hypothetical protein CJ030_MR3G019179 [Morella rubra])

HSP 1 Score: 75.5 bits (184), Expect = 3.6e-10
Identity = 33/77 (42.86%), Postives = 52/77 (67.53%), Query Frame = 0


Query: 25  EEERDEKRNGNMKSYKTATCVVSMVVACLMGGLVFGWWVFQFHPTNRQLWMVPFSLILMI 84
           +EE+DE +    +  K        ++ C++GGL  G+W F++HPTNRQLWMVPF LIL++
Sbjct: 5   KEEKDESQREYKERVKKFIIYSWALMVCMIGGLTLGYWEFEYHPTNRQLWMVPFGLILLV 64

Query: 85  APIFVLMSLLINAFCTS 102
            P+FV  S++++  C+S
Sbjct: 65  TPLFVWFSIVVSDVCSS 81

The following BLAST results are available for this feature:

BLAST of Lsi05G021710 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi05G021710 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L5S1	3.2e-52	86.89	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G118200 PE=4 SV=1	[more]
A0A0A0L8F5	3.2e-12	45.10	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G118220 PE=4 SV=1	[more]
A0A5D3DB24	5.5e-12	45.10	Putative permease/transmembrane protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A6A1W5X8	1.8e-10	42.86	Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR3G019179 PE=4 SV=1	[more]
A0A2N9FJR8	3.0e-10	42.05	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS18938 PE=4 SV=1	[more]

BLAST of Lsi05G021710 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN56384.1	6.6e-52	86.89	hypothetical protein Csa_011278 [Cucumis sativus]	[more]
KAG6582696.1	1.8e-25	59.38	hypothetical protein SDJN03_22698, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KGN56386.1	6.6e-12	45.10	hypothetical protein Csa_010779 [Cucumis sativus]	[more]
KAA0048855.1	1.1e-11	45.10	putative permease/transmembrane protein [Cucumis melo var. makuwa] >TYK20807.1 p...	[more]
KAB1219726.1	3.6e-10	42.86	hypothetical protein CJ030_MR3G019179 [Morella rubra]	[more]

BLAST of Lsi05G021710 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR032238	Putative ATP-synthase-associated protein	PFAM	PF16594	ATP-synt_Z	coord: 46..95 e-value: 3.8E-17 score: 61.6
None	No IPR available	PANTHER	PTHR35165:SF1	OS08G0113900 PROTEIN	coord: 18..115
None	No IPR available	PANTHER	PTHR35165	OS08G0113900 PROTEIN	coord: 18..115

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi05G021710.1	Lsi05G021710.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane