Lsi05G021530 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi05G021530
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUnknown protein
Locationchr05: 28261434 .. 28262414 (+)
RNA-Seq ExpressionLsi05G021530
SyntenyLsi05G021530
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGTAACCCAAAATGAAACCATCTTTTTTTCATACAAATTTGTTACCCAAAAAGGGCAGAAAAGAAATAGAACAAAAATTAAATCTGACAGAATAATAATAAATCTCCCTATCTACAGACCTAAGAATCAAGGCCCCCCCCCCCCTACAGATCCAGTGCATGCGACCCCATGGAAGAAAGTTACCTCGTCCATTGAGATTCCGCCACGTGTGTAAAATCAACTCTCTTTGTGCATAGGAGACGAATCGAACGACTGAGATATTTTGTTACTTTTCATCCTTAGAAACCCGTACAATTTTCTGAACTCTTTTCCGGTCTGAGTGTTTTCGCTGCATAATACGCCGCCCGATTCGACGGATTCGGCGACGGACTTCCTCGACCCGCAGTCGCTCAGCCGCCGGACGACGTTGCCGACTCTCCGCCGGTCGCCGTCGGTTTGCAACGCTGAGATGACCGATTTAATCGCTCGGCTAGGCGAGTTTCGGTTCGCGATCATCAGTTCGCCGATCTCGGCGGGGCTCAAACTGGCGCCGGTTTGGAATATTTCTTCAACCTGAGGGAACAATTTGTGATCCTTGACGCCTAGATAATTGATTGCGAGATTCTTGAAAGCAGAGAAATCGCAGAGTGGAAAATGGATATGAACGTCGATACGGCCCGGTCGGAGAATCGCCGGTTCGACTTGTTCCTTGCAATTGACGGTGAAAACCATTACTCTCTCTTCCGCACAGCACGATGTTAATATTCCGTCCATGAAGTTCAGCAGCGCTGATAGGCTCAACGCCGACGATTTCTCGGTGAGAAACCGATCGAGATCCTCGACGACGATTATTGACTTGCCTGTGGTCTGTAGCAGAAGAAACTTGAGATCAGAGTCATCGGAGACTTTGAAGAGGTCGATATCGTATACATCATAGGAGAGGAAATTCGCCATAGCGGCGACGAAGCTCGATTTTCCAGTTCCGGAAGGGCCGTATAG

mRNA sequence

ATGCTGTTTTCGCTGCATAATACGCCGCCCGATTCGACGGATTCGGCGACGGACTTCCTCGACCCGCAGTCGCTCAGCCGCCGGACGACGTTGCCGACTCTCCGCCGGTCGCCGTCGGTTTGCAACGCTGAGATGACCGATTTAATCGCTCGGCTAGGCGAGTTTCGGTTCGCGATCATCAGTTCGCCGATCTCGGCGGGGCTCAAACTGGCGCCGAGAAATCGCAGAGTGGAAAATGGATATGAACGTCGATACGGCCCGGTCGGAGAATCGCCGCACGATGTTAATATTCCGTCCATGAAGTTCAGCAGCGCTGATAGGCTCAACGCCGACGATTTCTCGGTGAGAAACCGATCGAGATCCTCGACGACGATTATTGACTTGCCTGTGCAGAAGAAACTTGAGATCAGAGTCATCGGAGACTTTGAAGAGGTCGATATCGTATACATCATAGGAGAGGAAATTCGCCATAGCGGCGACGAAGCTCGATTTTCCAGTTCCGGAAGGGCCGTATAG

Coding sequence (CDS)

ATGCTGTTTTCGCTGCATAATACGCCGCCCGATTCGACGGATTCGGCGACGGACTTCCTCGACCCGCAGTCGCTCAGCCGCCGGACGACGTTGCCGACTCTCCGCCGGTCGCCGTCGGTTTGCAACGCTGAGATGACCGATTTAATCGCTCGGCTAGGCGAGTTTCGGTTCGCGATCATCAGTTCGCCGATCTCGGCGGGGCTCAAACTGGCGCCGAGAAATCGCAGAGTGGAAAATGGATATGAACGTCGATACGGCCCGGTCGGAGAATCGCCGCACGATGTTAATATTCCGTCCATGAAGTTCAGCAGCGCTGATAGGCTCAACGCCGACGATTTCTCGGTGAGAAACCGATCGAGATCCTCGACGACGATTATTGACTTGCCTGTGCAGAAGAAACTTGAGATCAGAGTCATCGGAGACTTTGAAGAGGTCGATATCGTATACATCATAGGAGAGGAAATTCGCCATAGCGGCGACGAAGCTCGATTTTCCAGTTCCGGAAGGGCCGTATAG

Protein sequence

MLFSLHNTPPDSTDSATDFLDPQSLSRRTTLPTLRRSPSVCNAEMTDLIARLGEFRFAIISSPISAGLKLAPRNRRVENGYERRYGPVGESPHDVNIPSMKFSSADRLNADDFSVRNRSRSSTTIIDLPVQKKLEIRVIGDFEEVDIVYIIGEEIRHSGDEARFSSSGRAV
Homology
[Close]
BLAST of Lsi05G021530 vs. ExPASy TrEMBL
Match: A0A7J6DW90 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=G4B88_030913 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 3.9e-08
Identity = 44/92 (47.83%), Postives = 53/92 (57.61%), Query Frame = 0 

Query: 2   LFSLHNTPPDSTDSATDFLDPQSL--------SRRTTLPTLRRSPSVCNAEMTDLIARLG 61
           +FS   T   STDS+   + P+ L        S     P     P +C AEMTD  ARLG
Sbjct: 25  IFSRQKTVAGSTDSSP--VRPELLLLSLCCGGSILLLAPFAGLVPLLCRAEMTDFRARLG 84

Query: 62  EFRFAIISSPISAGLKLAPRNRRVENGYERRY 86
           + RF II+SPISA L+LAPRNRR ENG E R+
Sbjct: 85  DVRFDIINSPISAALRLAPRNRREENGCEHRF 114

[Close]
BLAST of Lsi05G021530 vs. ExPASy TrEMBL
Match: A0A7J6DW91 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=G4B88_030906 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 1.8e-05
Identity = 35/77 (45.45%), Postives = 50/77 (64.94%), Query Frame = 0 

Query: 100 MKFSSADRLN-----ADDFSVRNRSRSSTTIIDLPVQKKLEIRVIGDFEEVDIVYIIGEE 159
           MKFS+ D+L      A  F V+N SRSSTT+ D  V      R++GDF ++DIV+++ E+
Sbjct: 1   MKFSNPDKLTPPAMAAVRFPVKNLSRSSTTMSDFGV----VWRIVGDFGDIDIVHVVAEK 60

Query: 160 IRHSGDEARFSSSGRAV 172
             H G+EA FSS+G +V
Sbjct: 61  PSHGGNEAGFSSTGSSV 73

[Close]
BLAST of Lsi05G021530 vs. NCBI nr
Match: KAF4350395.1 (hypothetical protein G4B88_030913 [Cannabis sativa])

HSP 1 Score: 68.2 bits (165), Expect = 8.0e-08
Identity = 44/92 (47.83%), Postives = 53/92 (57.61%), Query Frame = 0 

Query: 2   LFSLHNTPPDSTDSATDFLDPQSL--------SRRTTLPTLRRSPSVCNAEMTDLIARLG 61
           +FS   T   STDS+   + P+ L        S     P     P +C AEMTD  ARLG
Sbjct: 25  IFSRQKTVAGSTDSSP--VRPELLLLSLCCGGSILLLAPFAGLVPLLCRAEMTDFRARLG 84

Query: 62  EFRFAIISSPISAGLKLAPRNRRVENGYERRY 86
           + RF II+SPISA L+LAPRNRR ENG E R+
Sbjct: 85  DVRFDIINSPISAALRLAPRNRREENGCEHRF 114

[Close]
BLAST of Lsi05G021530 vs. NCBI nr
Match: KAF4350388.1 (hypothetical protein G4B88_030906 [Cannabis sativa])

HSP 1 Score: 59.3 bits (142), Expect = 3.7e-05
Identity = 35/77 (45.45%), Postives = 50/77 (64.94%), Query Frame = 0 

Query: 100 MKFSSADRLN-----ADDFSVRNRSRSSTTIIDLPVQKKLEIRVIGDFEEVDIVYIIGEE 159
           MKFS+ D+L      A  F V+N SRSSTT+ D  V      R++GDF ++DIV+++ E+
Sbjct: 1   MKFSNPDKLTPPAMAAVRFPVKNLSRSSTTMSDFGV----VWRIVGDFGDIDIVHVVAEK 60

Query: 160 IRHSGDEARFSSSGRAV 172
             H G+EA FSS+G +V
Sbjct: 61  PSHGGNEAGFSSTGSSV 73

The following BLAST results are available for this feature:
BLAST of Lsi05G021530 vs.
Match NameE-valueIdentityDescription
BLAST of Lsi05G021530 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A7J6DW903.9e-0847.83Uncharacterized protein OS=Cannabis sativa OX=3483 GN=G4B88_030913 PE=4 SV=1[more]
A0A7J6DW911.8e-0545.45Uncharacterized protein OS=Cannabis sativa OX=3483 GN=G4B88_030906 PE=4 SV=1[more]
BLAST of Lsi05G021530 vs. NCBI nr
Match NameE-valueIdentityDescription
KAF4350395.18.0e-0847.83hypothetical protein G4B88_030913 [Cannabis sativa][more]
KAF4350388.13.7e-0545.45hypothetical protein G4B88_030906 [Cannabis sativa][more]
BLAST of Lsi05G021530 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..24

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi05G021530.1Lsi05G021530.1mRNA