Lsi05G021160 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi05G021160
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	cyclic nucleotide-gated ion channel 1-like
Location	chr05: 28046395 .. 28047453 (+)
RNA-Seq Expression	Lsi05G021160
Synteny	Lsi05G021160

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCATTGCTTGCGTTGTCCCTTCCTTCATTGACATATTTTATCTACTTCACATCATCATTGAATTTCGAACAGCTTTTCTGCCCTCTTCTTTACCTGAATCAGGAAGTGCTGAATTAACTCGAGATCTAGCAGTTATAGCAAAGAGATACCTCTCTTCAAACTTCATTATTGATATCTTATCCATTCTCCCACTGCCTCAGGTATAAGTTCAGTATAGTTTCTGGCAGCATCTGGTCTTTGCATTAAGAGCATTACATTTGGCTTATCTTCTCCTTTTGAATGCTAAAGTTCTGGACAACCATTTTTTTAAAGCTCAATCCATAATCTTCTCTTTCTTTTTATTGAACTAACATTTTGTGCTTGTTTTGTTCTATGCTGTTTGAGAGTGGAATATTGTTGAGCCATTTGATTGATTCTTGTGAATCGTTTGTTAAGATAACTTGGTTCTTTGTGTTGTTCAGCTTTTGGTACTAGTTATCGTACCTGCATTGAAAGGCTCGATACCAATGAAGACAAAGAAGTTTGTAAAGATTGCAGTTCTTTTGCAATACATTCCAAGGCTTCTCCGAATTTATCCACTATGCAAAGAAGTAGTCAGAACTTCTGGCATTCTAACAGAAAGCTCAGCTGCCTTCAATCTCCTTATTTATATGCAAGCTAGTCATGTATGTATTAGTTTATTTTATAGCAATTAAATAATCACCAGCTTTTATATTTTGGTTTGAAAAGGACATCTCTTATGAGTACTGCATATGATGAATCAGGTAGTTGGTGCTCTTTGGTATTTATTTTCCGTAGAACAACATGCAAGATGCTGGCTCGAGGCATGTAAGAAAAATAACTGTACCAGCAATTTTCGGTATTGTGGAGATCCGAACAGACAAGCTTACCTGTTTATAGATGCGTATTGCTCTCATAAAGAGTCTGAAGGTGACAATGCCTTTGACTTTGGGATGTATGTTGAAGCCTTTAAGTTCCATTTAACCGAGACGATGAGTTTCGACGTAAATTCATTCATTCTTTCTAGTGGGCTCTGCGAAATGTCAGGTTCGTAA

mRNA sequence

ATGATCATTGCTTGCGTTGTCCCTTCCTTCATTGACATATTTTATCTACTTCACATCATCATTGAATTTCGAACAGCTTTTCTGCCCTCTTCTTTACCTGAATCAGGAAGTGCTGAATTAACTCGAGATCTAGCAGTTATAGCAAAGAGATACCTCTCTTCAAACTTCATTATTGATATCTTATCCATTCTCCCACTGCCTCAGCTTTTGGTACTAGTTATCGTACCTGCATTGAAAGGCTCGATACCAATGAAGACAAAGAAGTTTGTAAAGATTGCAGTTCTTTTGCAATACATTCCAAGGCTTCTCCGAATTTATCCACTATGCAAAGAAGTAGTCAGAACTTCTGGCATTCTAACAGAAAGCTCAGCTGCCTTCAATCTCCTTATTTATATGCAAGCTAGTCATGTAGTTGGTGCTCTTTGGTATTTATTTTCCGTAGAACAACATGCAAGATGCTGGCTCGAGGCATGTAAGAAAAATAACTGTACCAGCAATTTTCGGTATTGTGGAGATCCGAACAGACAAGCTTACCTGTTTATAGATGCGTATTGCTCTCATAAAGAGTCTGAAGGTGACAATGCCTTTGACTTTGGGATGTATGTTGAAGCCTTTAAGTTCCATTTAACCGAGACGATGAGTTTCGACGTAAATTCATTCATTCTTTCTAGTGGGCTCTGCGAAATGTCAGGTTCGTAA

Coding sequence (CDS)

ATGATCATTGCTTGCGTTGTCCCTTCCTTCATTGACATATTTTATCTACTTCACATCATCATTGAATTTCGAACAGCTTTTCTGCCCTCTTCTTTACCTGAATCAGGAAGTGCTGAATTAACTCGAGATCTAGCAGTTATAGCAAAGAGATACCTCTCTTCAAACTTCATTATTGATATCTTATCCATTCTCCCACTGCCTCAGCTTTTGGTACTAGTTATCGTACCTGCATTGAAAGGCTCGATACCAATGAAGACAAAGAAGTTTGTAAAGATTGCAGTTCTTTTGCAATACATTCCAAGGCTTCTCCGAATTTATCCACTATGCAAAGAAGTAGTCAGAACTTCTGGCATTCTAACAGAAAGCTCAGCTGCCTTCAATCTCCTTATTTATATGCAAGCTAGTCATGTAGTTGGTGCTCTTTGGTATTTATTTTCCGTAGAACAACATGCAAGATGCTGGCTCGAGGCATGTAAGAAAAATAACTGTACCAGCAATTTTCGGTATTGTGGAGATCCGAACAGACAAGCTTACCTGTTTATAGATGCGTATTGCTCTCATAAAGAGTCTGAAGGTGACAATGCCTTTGACTTTGGGATGTATGTTGAAGCCTTTAAGTTCCATTTAACCGAGACGATGAGTTTCGACGTAAATTCATTCATTCTTTCTAGTGGGCTCTGCGAAATGTCAGGTTCGTAA

Protein sequence

MIIACVVPSFIDIFYLLHIIIEFRTAFLPSSLPESGSAELTRDLAVIAKRYLSSNFIIDILSILPLPQLLVLVIVPALKGSIPMKTKKFVKIAVLLQYIPRLLRIYPLCKEVVRTSGILTESSAAFNLLIYMQASHVVGALWYLFSVEQHARCWLEACKKNNCTSNFRYCGDPNRQAYLFIDAYCSHKESEGDNAFDFGMYVEAFKFHLTETMSFDVNSFILSSGLCEMSGS

Homology

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BLAST of Lsi05G021160 vs. ExPASy Swiss-Prot
Match: O65717 (Cyclic nucleotide-gated ion channel 1 OS=Arabidopsis thaliana OX=3702 GN=CNGC1 PE=1 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 2.4e-50
Identity = 108/224 (48.21%), Postives = 145/224 (64.73%), Query Frame = 0


Query: 2   IIACVVPSFIDIFYLLHIIIEFRTAFLPSSLPESGSAELTRDLAVIAKRYLSSNFIIDIL 61
           I A V+ SF D+FY+LHII +FRT F+  S    G   L  D   IAKRYLSS+FIIDIL
Sbjct: 134 ITASVLRSFTDVFYVLHIIFQFRTGFIAPSSRVFGRGVLVEDKREIAKRYLSSHFIIDIL 193

Query: 62  SILPLPQLLVLVIVPALKGSIPMKTKKFVKIAVLLQYIPRLLRIYPLCKEVVRTSGILTE 121
           ++LPLPQ+++L+I+P ++GS  + TK  +K  V  QYIPR +RIYPL KEV RTSGILTE
Sbjct: 194 AVLPLPQMVILIIIPHMRGSSSLNTKNMLKFIVFFQYIPRFIRIYPLYKEVTRTSGILTE 253

Query: 122 SS---AAFNLLIYMQASHVVGALWYLFSVEQHARCWLEACKKNN--CTSNFRYCGDPNRQ 181
           ++   AAFNL +YM ASHV GA WYLFS+E+   CW +AC++NN  C S   YC      
Sbjct: 254 TAWAGAAFNLFLYMLASHVFGAFWYLFSIERETVCWKQACERNNPPCISKLLYCDPETAG 313

Query: 182 AYLFIDAYCSHKESEGDNAFDFGMYVEAFKFHLTETMSFDVNSF 221
              F++  C   ++     FDFG++++A +  + E+  F    F
Sbjct: 314 GNAFLNESCP-IQTPNTTLFDFGIFLDALQSGVVESQDFPQKFF 356

[Close]

BLAST of Lsi05G021160 vs. ExPASy Swiss-Prot
Match: Q9LNJ0 (Probable cyclic nucleotide-gated ion channel 10 OS=Arabidopsis thaliana OX=3702 GN=CNGC10 PE=2 SV=2)

HSP 1 Score: 182.6 bits (462), Expect = 5.2e-45
Identity = 98/221 (44.34%), Postives = 142/221 (64.25%), Query Frame = 0


Query: 2   IIACVVPSFIDIFYLLHIIIEFRTAFLPSSLPESGSAELTRDLAVIAKRYLSSNFIIDIL 61
           I A ++ + ID FY++HI+ +FRTA++  S    G  EL  D   IA +YLSS FIID+L
Sbjct: 118 IAASLLRTLIDAFYIIHIVFQFRTAYIAPSSRVFGRGELVDDAKAIALKYLSSYFIIDLL 177

Query: 62  SILPLPQLLVLVIVPALKGSIPMKTKKFVKIAVLLQYIPRLLRIYPLCKEVVRTSGILTE 121
           SILPLPQ++VL ++P++   + + TK ++K +++ QY+PR+LR+YPL  EV RTSGI+TE
Sbjct: 178 SILPLPQIVVLAVIPSVNQPVSLLTKDYLKFSIIAQYVPRILRMYPLYTEVTRTSGIVTE 237

Query: 122 SS---AAFNLLIYMQASHVVGALWYLFSVEQHARCWLEACKK-NNCTSNFRYCGDPNRQA 181
           ++   AA+NL +YM ASHV GALWYL SVE+  RCW EAC+K   C   F YC +    +
Sbjct: 238 TAWAGAAWNLSLYMLASHVFGALWYLISVEREDRCWQEACEKTKGCNMKFLYCENDRNVS 297

Query: 182 YLFIDAYCSHKES---EGDNAFDFGMYVEAFKFHLTETMSF 216
             F+   C   +         F+FG++ +A K  + E+  F
Sbjct: 298 NNFLTTSCPFLDPGDITNSTIFNFGIFTDALKSGVVESHDF 338

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BLAST of Lsi05G021160 vs. ExPASy Swiss-Prot
Match: Q9SKD7 (Probable cyclic nucleotide-gated ion channel 3 OS=Arabidopsis thaliana OX=3702 GN=CNGC3 PE=2 SV=2)

HSP 1 Score: 178.3 bits (451), Expect = 9.8e-44
Identity = 97/225 (43.11%), Postives = 136/225 (60.44%), Query Frame = 0


Query: 3   IACVVPSFIDIFYLLHIIIEFRTAFLPSSLPESGSAELTRDLAVIAKRYLSSNFIIDILS 62
           IACV  +FID FY++H++ +F T F+  S    G  EL      IA RYL S F+ID+LS
Sbjct: 123 IACVFRTFIDAFYVVHMLFQFHTGFITPSSSGFGRGELNEKHKDIALRYLGSYFLIDLLS 182

Query: 63  ILPLPQLLVLVIVPALKGSIPMKTKKFVKIAVLLQYIPRLLRIYPLCKEVVRTSGILTES 122
           ILP+PQ++VL IVP ++    +  K+ +K  +  QY+PR+ RIYPL KEV RTSG++TE+
Sbjct: 183 ILPIPQVVVLAIVPRMRRPASLVAKELLKWVIFCQYVPRIARIYPLFKEVTRTSGLVTET 242

Query: 123 S---AAFNLLIYMQASHVVGALWYLFSVEQHARCWLEACKK-NNCTSNFRYCGDPNRQAY 182
           +   AA NL +YM ASHV G+ WYL S+E+  RCW EAC K  NCT  + YC        
Sbjct: 243 AWAGAALNLFLYMLASHVFGSFWYLISIERKDRCWREACAKIQNCTHAYLYCSPTGEDNR 302

Query: 183 LFIDAYC---SHKESEGDNAFDFGMYVEAFKFHLTETMSFDVNSF 221
           LF++  C     +E      F+FG++ +A +  + E+  F    F
Sbjct: 303 LFLNGSCPLIDPEEITNSTVFNFGIFADALQSGVVESRDFPKKFF 347

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BLAST of Lsi05G021160 vs. ExPASy Swiss-Prot
Match: Q9LD40 (Putative cyclic nucleotide-gated ion channel 13 OS=Arabidopsis thaliana OX=3702 GN=CNGC13 PE=3 SV=2)

HSP 1 Score: 177.9 bits (450), Expect = 1.3e-43
Identity = 102/222 (45.95%), Postives = 139/222 (62.61%), Query Frame = 0


Query: 2   IIACVVPSFIDIFYLLHIIIEFRTAFLPSSLPESGSAELTRDLAVIAKRYLSSNFIIDIL 61
           I A V+ +FID FY++HI+ +FRTA++  S    G  EL  D   IA +YLSS FIID+L
Sbjct: 118 IAASVLRTFIDAFYIIHIVFQFRTAYISPSSRVFGRGELVDDPKAIAIKYLSSYFIIDLL 177

Query: 62  SILPLPQLLVLVIVPALKGSIPMKTKKFVKIAVLLQYIPRLLRIYPLCKEVVRTSGILTE 121
           SILPLPQL+VL ++P +   + + TK ++   +  QYIPR+LRIYPL  EV RTSGI+TE
Sbjct: 178 SILPLPQLVVLAVIPNVNKPVSLITKDYLITVIFTQYIPRILRIYPLYTEVTRTSGIVTE 237

Query: 122 SS---AAFNLLIYMQASHVVGALWYLFSVEQHARCWLEACKK--NNCTSNFRYCGDPNRQ 181
           ++   AA+NL +YM ASHV GALWYL SVE+  RCW EAC+K    C   F YC   +  
Sbjct: 238 TAWAGAAWNLSLYMLASHVFGALWYLISVEREDRCWREACEKIPEVCNFRFLYCDGNSSV 297

Query: 182 AYLFIDAYC---SHKESEGDNAFDFGMYVEAFKFHLTETMSF 216
              F+   C   +  +      F+FG++ +A K  + E+  F
Sbjct: 298 RNDFLTTSCPFINPDDITNSTVFNFGIFTDALKSGIVESDDF 339

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BLAST of Lsi05G021160 vs. ExPASy Swiss-Prot
Match: O82226 (Probable cyclic nucleotide-gated ion channel 6 OS=Arabidopsis thaliana OX=3702 GN=CNGC6 PE=1 SV=2)

HSP 1 Score: 167.5 bits (423), Expect = 1.7e-40
Identity = 95/227 (41.85%), Postives = 139/227 (61.23%), Query Frame = 0


Query: 2   IIACVVPSFIDIFYLLHIIIEFRTAFLPSSLPESGSAELTRDLAVIAKRYLSSNFIIDIL 61
           II   + + ID FYL H+ + FRTA++  S    G  EL  D A IAKRYL   FIID+L
Sbjct: 153 IIVTTIRTVIDSFYLFHMALRFRTAYVAPSSRVFGRGELVIDPAQIAKRYLQQYFIIDLL 212

Query: 62  SILPLPQLLVLVIVPALKGSIPMKTKKFVKIAVLLQYIPRLLRIYPLCKEVVRTSGILTE 121
           S+LP+PQ++V   +   +G+  + TK+ ++  VL+QYIPR LR+YPL  E+ RT+G+  E
Sbjct: 213 SVLPVPQIIVWRFLYTSRGANVLATKQALRYIVLVQYIPRFLRMYPLSSELKRTAGVFAE 272

Query: 122 SS---AAFNLLIYMQASHVVGALWYLFSVEQHARCWLEACKKN-NCTSNFRYCGDPNRQA 181
           ++   AA+ LL+YM ASH+VGALWYL ++E++  CW +AC  N NCT NF +CG+ N + 
Sbjct: 273 TAWAGAAYYLLLYMLASHIVGALWYLLALERNNDCWSKACHNNQNCTRNFLFCGNQNMKG 332

Query: 182 YL--------FIDAYCSHKESEGDN-AFDFGMYVEAFKFHLTETMSF 216
           Y         ++   C     E +   FDFG+Y+ A    +  + +F
Sbjct: 333 YAAWDNIKVSYLQLKCPVNVPEDEEPPFDFGIYLRALSSGIVSSKNF 379

[Close]

BLAST of Lsi05G021160 vs. ExPASy TrEMBL
Match: A0A5A7U3S4 (Cyclic nucleotide-gated ion channel 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold171G001110 PE=4 SV=1)

HSP 1 Score: 369.0 bits (946), Expect = 1.4e-98
Identity = 194/218 (88.99%), Postives = 197/218 (90.37%), Query Frame = 0


Query: 1   MIIACVVPSFIDIFYLLHIIIEFRTAFLPSSLPESGSAELTRDLAVIAKRYLSSNFIIDI 60
           MIIAC++ SFIDIFYLLHII EFRT FLPSSLPE GSAEL R LA IAKRYLSSNF IDI
Sbjct: 61  MIIACILRSFIDIFYLLHIIFEFRTGFLPSSLPEPGSAELIRGLADIAKRYLSSNFTIDI 120

Query: 61  LSILPLPQLLVLVIVPALKGSIPMKTKKFVKIAVLLQYIPRLLRIYPLCKEVVRTSGILT 120
           LSILPLPQLLVLVI PALKGS PMKTKKFVKIAVLLQYIPRLLRIYPL KEVVRTSGILT
Sbjct: 121 LSILPLPQLLVLVITPALKGSFPMKTKKFVKIAVLLQYIPRLLRIYPLYKEVVRTSGILT 180

Query: 121 E---SSAAFNLLIYMQASHVVGALWYLFSVEQHARCWLEACKKNNCTSNFRYCGDPNRQA 180
           E   S AAFNLLIY+QASHVVGALWYLFSVEQ ARCW EACKK NCTSNF YCGDPN QA
Sbjct: 181 ERAWSGAAFNLLIYLQASHVVGALWYLFSVEQQARCWHEACKKINCTSNFLYCGDPNGQA 240

Query: 181 YLFIDAYCSHKESEGDNAFDFGMYVEAFKFHLTETMSF 216
           YLFIDAYCSHKESEGDNAFDFGMY EAFKFHLTETMSF
Sbjct: 241 YLFIDAYCSHKESEGDNAFDFGMYAEAFKFHLTETMSF 278

[Close]

BLAST of Lsi05G021160 vs. ExPASy TrEMBL
Match: A0A1S3AVP7 (cyclic nucleotide-gated ion channel 1-like OS=Cucumis melo OX=3656 GN=LOC103483194 PE=4 SV=1)

HSP 1 Score: 369.0 bits (946), Expect = 1.4e-98
Identity = 194/218 (88.99%), Postives = 197/218 (90.37%), Query Frame = 0


Query: 1   MIIACVVPSFIDIFYLLHIIIEFRTAFLPSSLPESGSAELTRDLAVIAKRYLSSNFIIDI 60
           MIIAC++ SFIDIFYLLHII EFRT FLPSSLPE GSAEL R LA IAKRYLSSNF IDI
Sbjct: 101 MIIACILRSFIDIFYLLHIIFEFRTGFLPSSLPEPGSAELIRGLADIAKRYLSSNFTIDI 160

Query: 61  LSILPLPQLLVLVIVPALKGSIPMKTKKFVKIAVLLQYIPRLLRIYPLCKEVVRTSGILT 120
           LSILPLPQLLVLVI PALKGS PMKTKKFVKIAVLLQYIPRLLRIYPL KEVVRTSGILT
Sbjct: 161 LSILPLPQLLVLVITPALKGSFPMKTKKFVKIAVLLQYIPRLLRIYPLYKEVVRTSGILT 220

Query: 121 E---SSAAFNLLIYMQASHVVGALWYLFSVEQHARCWLEACKKNNCTSNFRYCGDPNRQA 180
           E   S AAFNLLIY+QASHVVGALWYLFSVEQ ARCW EACKK NCTSNF YCGDPN QA
Sbjct: 221 ERAWSGAAFNLLIYLQASHVVGALWYLFSVEQQARCWHEACKKINCTSNFLYCGDPNGQA 280

Query: 181 YLFIDAYCSHKESEGDNAFDFGMYVEAFKFHLTETMSF 216
           YLFIDAYCSHKESEGDNAFDFGMY EAFKFHLTETMSF
Sbjct: 281 YLFIDAYCSHKESEGDNAFDFGMYAEAFKFHLTETMSF 318

[Close]

BLAST of Lsi05G021160 vs. ExPASy TrEMBL
Match: A0A5D3DBC3 (Cyclic nucleotide-gated ion channel 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold291G001090 PE=4 SV=1)

HSP 1 Score: 367.9 bits (943), Expect = 3.2e-98
Identity = 193/218 (88.53%), Postives = 197/218 (90.37%), Query Frame = 0


Query: 1   MIIACVVPSFIDIFYLLHIIIEFRTAFLPSSLPESGSAELTRDLAVIAKRYLSSNFIIDI 60
           MIIAC++ SFIDIFYLLHII EFRT FLPSSLPE GSAEL R LA IAKRYLSSNF IDI
Sbjct: 61  MIIACILRSFIDIFYLLHIIFEFRTGFLPSSLPEPGSAELIRGLADIAKRYLSSNFTIDI 120

Query: 61  LSILPLPQLLVLVIVPALKGSIPMKTKKFVKIAVLLQYIPRLLRIYPLCKEVVRTSGILT 120
           LSILPLPQLLVLVI PALKGS PMKTKKFVKIAVLLQYIPRLLRIYPL KEVVRTSGILT
Sbjct: 121 LSILPLPQLLVLVITPALKGSFPMKTKKFVKIAVLLQYIPRLLRIYPLYKEVVRTSGILT 180

Query: 121 E---SSAAFNLLIYMQASHVVGALWYLFSVEQHARCWLEACKKNNCTSNFRYCGDPNRQA 180
           E   S AAFNLLIY+QASHV+GALWYLFSVEQ ARCW EACKK NCTSNF YCGDPN QA
Sbjct: 181 ERAWSGAAFNLLIYLQASHVLGALWYLFSVEQQARCWHEACKKINCTSNFLYCGDPNGQA 240

Query: 181 YLFIDAYCSHKESEGDNAFDFGMYVEAFKFHLTETMSF 216
           YLFIDAYCSHKESEGDNAFDFGMY EAFKFHLTETMSF
Sbjct: 241 YLFIDAYCSHKESEGDNAFDFGMYAEAFKFHLTETMSF 278

[Close]

BLAST of Lsi05G021160 vs. ExPASy TrEMBL
Match: A0A6J1D1B4 (cyclic nucleotide-gated ion channel 1-like OS=Momordica charantia OX=3673 GN=LOC111016363 PE=4 SV=1)

HSP 1 Score: 306.6 bits (784), Expect = 8.8e-80
Identity = 158/214 (73.83%), Postives = 175/214 (81.78%), Query Frame = 0


Query: 1   MIIACVVPSFIDIFYLLHIIIEFRTAFLPSSLPESGSAELTRDLAVIAKRYLSSNFIIDI 60
           MIIACV+ SFIDIFYLLHII EFRT FLP SLP  GS EL  D A IAKRYLSSNFIIDI
Sbjct: 130 MIIACVLRSFIDIFYLLHIIFEFRTGFLPPSLPVFGSGELVEDPAAIAKRYLSSNFIIDI 189

Query: 61  LSILPLPQLLVLVIVPALKGSIPMKTKKFVKIAVLLQYIPRLLRIYPLCKEVVRTSGILT 120
           LSI+PLPQLL LVI+PA KG IP+KTK F+K+AVLLQY+PRL RIYPL +EV RTSGILT
Sbjct: 190 LSIIPLPQLLALVIIPAAKGPIPLKTKNFMKVAVLLQYLPRLFRIYPLYREVTRTSGILT 249

Query: 121 E---SSAAFNLLIYMQASHVVGALWYLFSVEQHARCWLEACKKNNCTSNFRYCGDPNRQA 180
           E   S AAFNLLIYM ASHVVGA+WYLFSVEQ +RCW EAC+KNNC S + YCGD +R A
Sbjct: 250 ETAWSGAAFNLLIYMLASHVVGAIWYLFSVEQESRCWHEACRKNNCNSKYLYCGDHSRPA 309

Query: 181 YLFIDAYCSHKESEGDNAFDFGMYVEAFKFHLTE 212
           Y FI  YC HKESE D  F+FG+Y+EA KF LT+
Sbjct: 310 YGFIKEYCPHKESEDDKTFNFGIYLEALKFRLTD 343

[Close]

BLAST of Lsi05G021160 vs. ExPASy TrEMBL
Match: A0A6J1D2C8 (LOW QUALITY PROTEIN: cyclic nucleotide-gated ion channel 1-like OS=Momordica charantia OX=3673 GN=LOC111016362 PE=4 SV=1)

HSP 1 Score: 298.1 bits (762), Expect = 3.1e-77
Identity = 158/214 (73.83%), Postives = 174/214 (81.31%), Query Frame = 0


Query: 1   MIIACVVPSFIDIFYLLHIIIEFRTAFLPSSLPESGSAELTRDLAVIAKRYLSSNFIIDI 60
           MIIAC++ SFIDIFYLLHII EFRT FLP SLP  GS EL  D A IAKRYLSSNFIIDI
Sbjct: 132 MIIACILRSFIDIFYLLHIIFEFRTGFLPPSLPVFGSGELVEDPAAIAKRYLSSNFIIDI 191

Query: 61  LSILPLPQLLVLVIVPALKGSIPMKTKKFVKIAVLLQYIPRLLRIYPLCKEVVRTSGILT 120
           LSI+PLPQLLVLVI+PA KG I ++TK FVK+AVLLQYIPRLLRIY L +EV RTSGILT
Sbjct: 192 LSIIPLPQLLVLVIIPAAKGPIALRTKDFVKVAVLLQYIPRLLRIYLLYREVTRTSGILT 251

Query: 121 E---SSAAFNLLIYMQASHVVGALWYLFSVEQHARCWLEACKKNNCTSNFRYCGDPNRQA 180
           E   S AAFNLLIYM ASHVVGA+WYLFSVEQ  RCWLEAC+  NC S    CGDP+R A
Sbjct: 252 ERAWSGAAFNLLIYMLASHVVGAIWYLFSVEQEERCWLEACRTRNCNSKDLCCGDPSRAA 311

Query: 181 YLFIDAYCSHKESEGDNAFDFGMYVEAFKFHLTE 212
           Y+ I  YCSHK+SE D  F+FGMY+EA KFHLT+
Sbjct: 312 YI-IKQYCSHKKSEDDKTFNFGMYLEALKFHLTD 344

[Close]

BLAST of Lsi05G021160 vs. NCBI nr
Match: KAA0048896.1 (cyclic nucleotide-gated ion channel 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 369.0 bits (946), Expect = 3.0e-98
Identity = 194/218 (88.99%), Postives = 197/218 (90.37%), Query Frame = 0


Query: 1   MIIACVVPSFIDIFYLLHIIIEFRTAFLPSSLPESGSAELTRDLAVIAKRYLSSNFIIDI 60
           MIIAC++ SFIDIFYLLHII EFRT FLPSSLPE GSAEL R LA IAKRYLSSNF IDI
Sbjct: 61  MIIACILRSFIDIFYLLHIIFEFRTGFLPSSLPEPGSAELIRGLADIAKRYLSSNFTIDI 120

Query: 61  LSILPLPQLLVLVIVPALKGSIPMKTKKFVKIAVLLQYIPRLLRIYPLCKEVVRTSGILT 120
           LSILPLPQLLVLVI PALKGS PMKTKKFVKIAVLLQYIPRLLRIYPL KEVVRTSGILT
Sbjct: 121 LSILPLPQLLVLVITPALKGSFPMKTKKFVKIAVLLQYIPRLLRIYPLYKEVVRTSGILT 180

Query: 121 E---SSAAFNLLIYMQASHVVGALWYLFSVEQHARCWLEACKKNNCTSNFRYCGDPNRQA 180
           E   S AAFNLLIY+QASHVVGALWYLFSVEQ ARCW EACKK NCTSNF YCGDPN QA
Sbjct: 181 ERAWSGAAFNLLIYLQASHVVGALWYLFSVEQQARCWHEACKKINCTSNFLYCGDPNGQA 240

Query: 181 YLFIDAYCSHKESEGDNAFDFGMYVEAFKFHLTETMSF 216
           YLFIDAYCSHKESEGDNAFDFGMY EAFKFHLTETMSF
Sbjct: 241 YLFIDAYCSHKESEGDNAFDFGMYAEAFKFHLTETMSF 278

[Close]

BLAST of Lsi05G021160 vs. NCBI nr
Match: XP_008437904.1 (PREDICTED: cyclic nucleotide-gated ion channel 1-like [Cucumis melo])

HSP 1 Score: 369.0 bits (946), Expect = 3.0e-98
Identity = 194/218 (88.99%), Postives = 197/218 (90.37%), Query Frame = 0


Query: 1   MIIACVVPSFIDIFYLLHIIIEFRTAFLPSSLPESGSAELTRDLAVIAKRYLSSNFIIDI 60
           MIIAC++ SFIDIFYLLHII EFRT FLPSSLPE GSAEL R LA IAKRYLSSNF IDI
Sbjct: 101 MIIACILRSFIDIFYLLHIIFEFRTGFLPSSLPEPGSAELIRGLADIAKRYLSSNFTIDI 160

Query: 61  LSILPLPQLLVLVIVPALKGSIPMKTKKFVKIAVLLQYIPRLLRIYPLCKEVVRTSGILT 120
           LSILPLPQLLVLVI PALKGS PMKTKKFVKIAVLLQYIPRLLRIYPL KEVVRTSGILT
Sbjct: 161 LSILPLPQLLVLVITPALKGSFPMKTKKFVKIAVLLQYIPRLLRIYPLYKEVVRTSGILT 220

Query: 121 E---SSAAFNLLIYMQASHVVGALWYLFSVEQHARCWLEACKKNNCTSNFRYCGDPNRQA 180
           E   S AAFNLLIY+QASHVVGALWYLFSVEQ ARCW EACKK NCTSNF YCGDPN QA
Sbjct: 221 ERAWSGAAFNLLIYLQASHVVGALWYLFSVEQQARCWHEACKKINCTSNFLYCGDPNGQA 280

Query: 181 YLFIDAYCSHKESEGDNAFDFGMYVEAFKFHLTETMSF 216
           YLFIDAYCSHKESEGDNAFDFGMY EAFKFHLTETMSF
Sbjct: 281 YLFIDAYCSHKESEGDNAFDFGMYAEAFKFHLTETMSF 318

[Close]

BLAST of Lsi05G021160 vs. NCBI nr
Match: TYK20846.1 (cyclic nucleotide-gated ion channel 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 367.9 bits (943), Expect = 6.6e-98
Identity = 193/218 (88.53%), Postives = 197/218 (90.37%), Query Frame = 0


Query: 1   MIIACVVPSFIDIFYLLHIIIEFRTAFLPSSLPESGSAELTRDLAVIAKRYLSSNFIIDI 60
           MIIAC++ SFIDIFYLLHII EFRT FLPSSLPE GSAEL R LA IAKRYLSSNF IDI
Sbjct: 61  MIIACILRSFIDIFYLLHIIFEFRTGFLPSSLPEPGSAELIRGLADIAKRYLSSNFTIDI 120

Query: 61  LSILPLPQLLVLVIVPALKGSIPMKTKKFVKIAVLLQYIPRLLRIYPLCKEVVRTSGILT 120
           LSILPLPQLLVLVI PALKGS PMKTKKFVKIAVLLQYIPRLLRIYPL KEVVRTSGILT
Sbjct: 121 LSILPLPQLLVLVITPALKGSFPMKTKKFVKIAVLLQYIPRLLRIYPLYKEVVRTSGILT 180

Query: 121 E---SSAAFNLLIYMQASHVVGALWYLFSVEQHARCWLEACKKNNCTSNFRYCGDPNRQA 180
           E   S AAFNLLIY+QASHV+GALWYLFSVEQ ARCW EACKK NCTSNF YCGDPN QA
Sbjct: 181 ERAWSGAAFNLLIYLQASHVLGALWYLFSVEQQARCWHEACKKINCTSNFLYCGDPNGQA 240

Query: 181 YLFIDAYCSHKESEGDNAFDFGMYVEAFKFHLTETMSF 216
           YLFIDAYCSHKESEGDNAFDFGMY EAFKFHLTETMSF
Sbjct: 241 YLFIDAYCSHKESEGDNAFDFGMYAEAFKFHLTETMSF 278

[Close]

BLAST of Lsi05G021160 vs. NCBI nr
Match: XP_022147438.1 (cyclic nucleotide-gated ion channel 1-like [Momordica charantia])

HSP 1 Score: 306.6 bits (784), Expect = 1.8e-79
Identity = 158/214 (73.83%), Postives = 175/214 (81.78%), Query Frame = 0


Query: 1   MIIACVVPSFIDIFYLLHIIIEFRTAFLPSSLPESGSAELTRDLAVIAKRYLSSNFIIDI 60
           MIIACV+ SFIDIFYLLHII EFRT FLP SLP  GS EL  D A IAKRYLSSNFIIDI
Sbjct: 130 MIIACVLRSFIDIFYLLHIIFEFRTGFLPPSLPVFGSGELVEDPAAIAKRYLSSNFIIDI 189

Query: 61  LSILPLPQLLVLVIVPALKGSIPMKTKKFVKIAVLLQYIPRLLRIYPLCKEVVRTSGILT 120
           LSI+PLPQLL LVI+PA KG IP+KTK F+K+AVLLQY+PRL RIYPL +EV RTSGILT
Sbjct: 190 LSIIPLPQLLALVIIPAAKGPIPLKTKNFMKVAVLLQYLPRLFRIYPLYREVTRTSGILT 249

Query: 121 E---SSAAFNLLIYMQASHVVGALWYLFSVEQHARCWLEACKKNNCTSNFRYCGDPNRQA 180
           E   S AAFNLLIYM ASHVVGA+WYLFSVEQ +RCW EAC+KNNC S + YCGD +R A
Sbjct: 250 ETAWSGAAFNLLIYMLASHVVGAIWYLFSVEQESRCWHEACRKNNCNSKYLYCGDHSRPA 309

Query: 181 YLFIDAYCSHKESEGDNAFDFGMYVEAFKFHLTE 212
           Y FI  YC HKESE D  F+FG+Y+EA KF LT+
Sbjct: 310 YGFIKEYCPHKESEDDKTFNFGIYLEALKFRLTD 343

[Close]

BLAST of Lsi05G021160 vs. NCBI nr
Match: XP_022147437.1 (LOW QUALITY PROTEIN: cyclic nucleotide-gated ion channel 1-like [Momordica charantia])

HSP 1 Score: 298.1 bits (762), Expect = 6.5e-77
Identity = 158/214 (73.83%), Postives = 174/214 (81.31%), Query Frame = 0


Query: 1   MIIACVVPSFIDIFYLLHIIIEFRTAFLPSSLPESGSAELTRDLAVIAKRYLSSNFIIDI 60
           MIIAC++ SFIDIFYLLHII EFRT FLP SLP  GS EL  D A IAKRYLSSNFIIDI
Sbjct: 132 MIIACILRSFIDIFYLLHIIFEFRTGFLPPSLPVFGSGELVEDPAAIAKRYLSSNFIIDI 191

Query: 61  LSILPLPQLLVLVIVPALKGSIPMKTKKFVKIAVLLQYIPRLLRIYPLCKEVVRTSGILT 120
           LSI+PLPQLLVLVI+PA KG I ++TK FVK+AVLLQYIPRLLRIY L +EV RTSGILT
Sbjct: 192 LSIIPLPQLLVLVIIPAAKGPIALRTKDFVKVAVLLQYIPRLLRIYLLYREVTRTSGILT 251

Query: 121 E---SSAAFNLLIYMQASHVVGALWYLFSVEQHARCWLEACKKNNCTSNFRYCGDPNRQA 180
           E   S AAFNLLIYM ASHVVGA+WYLFSVEQ  RCWLEAC+  NC S    CGDP+R A
Sbjct: 252 ERAWSGAAFNLLIYMLASHVVGAIWYLFSVEQEERCWLEACRTRNCNSKDLCCGDPSRAA 311

Query: 181 YLFIDAYCSHKESEGDNAFDFGMYVEAFKFHLTE 212
           Y+ I  YCSHK+SE D  F+FGMY+EA KFHLT+
Sbjct: 312 YI-IKQYCSHKKSEDDKTFNFGMYLEALKFHLTD 344

[Close]

BLAST of Lsi05G021160 vs. TAIR 10
Match: AT5G53130.1 (cyclic nucleotide gated channel 1 )

HSP 1 Score: 200.3 bits (508), Expect = 1.7e-51
Identity = 108/224 (48.21%), Postives = 145/224 (64.73%), Query Frame = 0


Query: 2   IIACVVPSFIDIFYLLHIIIEFRTAFLPSSLPESGSAELTRDLAVIAKRYLSSNFIIDIL 61
           I A V+ SF D+FY+LHII +FRT F+  S    G   L  D   IAKRYLSS+FIIDIL
Sbjct: 134 ITASVLRSFTDVFYVLHIIFQFRTGFIAPSSRVFGRGVLVEDKREIAKRYLSSHFIIDIL 193

Query: 62  SILPLPQLLVLVIVPALKGSIPMKTKKFVKIAVLLQYIPRLLRIYPLCKEVVRTSGILTE 121
           ++LPLPQ+++L+I+P ++GS  + TK  +K  V  QYIPR +RIYPL KEV RTSGILTE
Sbjct: 194 AVLPLPQMVILIIIPHMRGSSSLNTKNMLKFIVFFQYIPRFIRIYPLYKEVTRTSGILTE 253

Query: 122 SS---AAFNLLIYMQASHVVGALWYLFSVEQHARCWLEACKKNN--CTSNFRYCGDPNRQ 181
           ++   AAFNL +YM ASHV GA WYLFS+E+   CW +AC++NN  C S   YC      
Sbjct: 254 TAWAGAAFNLFLYMLASHVFGAFWYLFSIERETVCWKQACERNNPPCISKLLYCDPETAG 313

Query: 182 AYLFIDAYCSHKESEGDNAFDFGMYVEAFKFHLTETMSFDVNSF 221
              F++  C   ++     FDFG++++A +  + E+  F    F
Sbjct: 314 GNAFLNESCP-IQTPNTTLFDFGIFLDALQSGVVESQDFPQKFF 356

[Close]

BLAST of Lsi05G021160 vs. TAIR 10
Match: AT1G01340.1 (cyclic nucleotide gated channel 10 )

HSP 1 Score: 182.6 bits (462), Expect = 3.7e-46
Identity = 98/221 (44.34%), Postives = 142/221 (64.25%), Query Frame = 0


Query: 2   IIACVVPSFIDIFYLLHIIIEFRTAFLPSSLPESGSAELTRDLAVIAKRYLSSNFIIDIL 61
           I A ++ + ID FY++HI+ +FRTA++  S    G  EL  D   IA +YLSS FIID+L
Sbjct: 113 IAASLLRTLIDAFYIIHIVFQFRTAYIAPSSRVFGRGELVDDAKAIALKYLSSYFIIDLL 172

Query: 62  SILPLPQLLVLVIVPALKGSIPMKTKKFVKIAVLLQYIPRLLRIYPLCKEVVRTSGILTE 121
           SILPLPQ++VL ++P++   + + TK ++K +++ QY+PR+LR+YPL  EV RTSGI+TE
Sbjct: 173 SILPLPQIVVLAVIPSVNQPVSLLTKDYLKFSIIAQYVPRILRMYPLYTEVTRTSGIVTE 232

Query: 122 SS---AAFNLLIYMQASHVVGALWYLFSVEQHARCWLEACKK-NNCTSNFRYCGDPNRQA 181
           ++   AA+NL +YM ASHV GALWYL SVE+  RCW EAC+K   C   F YC +    +
Sbjct: 233 TAWAGAAWNLSLYMLASHVFGALWYLISVEREDRCWQEACEKTKGCNMKFLYCENDRNVS 292

Query: 182 YLFIDAYCSHKES---EGDNAFDFGMYVEAFKFHLTETMSF 216
             F+   C   +         F+FG++ +A K  + E+  F
Sbjct: 293 NNFLTTSCPFLDPGDITNSTIFNFGIFTDALKSGVVESHDF 333

[Close]

BLAST of Lsi05G021160 vs. TAIR 10
Match: AT1G01340.2 (cyclic nucleotide gated channel 10 )

HSP 1 Score: 182.6 bits (462), Expect = 3.7e-46
Identity = 98/221 (44.34%), Postives = 142/221 (64.25%), Query Frame = 0


Query: 2   IIACVVPSFIDIFYLLHIIIEFRTAFLPSSLPESGSAELTRDLAVIAKRYLSSNFIIDIL 61
           I A ++ + ID FY++HI+ +FRTA++  S    G  EL  D   IA +YLSS FIID+L
Sbjct: 118 IAASLLRTLIDAFYIIHIVFQFRTAYIAPSSRVFGRGELVDDAKAIALKYLSSYFIIDLL 177

Query: 62  SILPLPQLLVLVIVPALKGSIPMKTKKFVKIAVLLQYIPRLLRIYPLCKEVVRTSGILTE 121
           SILPLPQ++VL ++P++   + + TK ++K +++ QY+PR+LR+YPL  EV RTSGI+TE
Sbjct: 178 SILPLPQIVVLAVIPSVNQPVSLLTKDYLKFSIIAQYVPRILRMYPLYTEVTRTSGIVTE 237

Query: 122 SS---AAFNLLIYMQASHVVGALWYLFSVEQHARCWLEACKK-NNCTSNFRYCGDPNRQA 181
           ++   AA+NL +YM ASHV GALWYL SVE+  RCW EAC+K   C   F YC +    +
Sbjct: 238 TAWAGAAWNLSLYMLASHVFGALWYLISVEREDRCWQEACEKTKGCNMKFLYCENDRNVS 297

Query: 182 YLFIDAYCSHKES---EGDNAFDFGMYVEAFKFHLTETMSF 216
             F+   C   +         F+FG++ +A K  + E+  F
Sbjct: 298 NNFLTTSCPFLDPGDITNSTIFNFGIFTDALKSGVVESHDF 338

[Close]

BLAST of Lsi05G021160 vs. TAIR 10
Match: AT2G46430.1 (cyclic nucleotide gated channel 3 )

HSP 1 Score: 178.3 bits (451), Expect = 7.0e-45
Identity = 97/225 (43.11%), Postives = 136/225 (60.44%), Query Frame = 0


Query: 3   IACVVPSFIDIFYLLHIIIEFRTAFLPSSLPESGSAELTRDLAVIAKRYLSSNFIIDILS 62
           IACV  +FID FY++H++ +F T F+  S    G  EL      IA RYL S F+ID+LS
Sbjct: 123 IACVFRTFIDAFYVVHMLFQFHTGFITPSSSGFGRGELNEKHKDIALRYLGSYFLIDLLS 182

Query: 63  ILPLPQLLVLVIVPALKGSIPMKTKKFVKIAVLLQYIPRLLRIYPLCKEVVRTSGILTES 122
           ILP+PQ++VL IVP ++    +  K+ +K  +  QY+PR+ RIYPL KEV RTSG++TE+
Sbjct: 183 ILPIPQVVVLAIVPRMRRPASLVAKELLKWVIFCQYVPRIARIYPLFKEVTRTSGLVTET 242

Query: 123 S---AAFNLLIYMQASHVVGALWYLFSVEQHARCWLEACKK-NNCTSNFRYCGDPNRQAY 182
           +   AA NL +YM ASHV G+ WYL S+E+  RCW EAC K  NCT  + YC        
Sbjct: 243 AWAGAALNLFLYMLASHVFGSFWYLISIERKDRCWREACAKIQNCTHAYLYCSPTGEDNR 302

Query: 183 LFIDAYC---SHKESEGDNAFDFGMYVEAFKFHLTETMSFDVNSF 221
           LF++  C     +E      F+FG++ +A +  + E+  F    F
Sbjct: 303 LFLNGSCPLIDPEEITNSTVFNFGIFADALQSGVVESRDFPKKFF 347

[Close]

BLAST of Lsi05G021160 vs. TAIR 10
Match: AT2G46430.2 (cyclic nucleotide gated channel 3 )

HSP 1 Score: 178.3 bits (451), Expect = 7.0e-45
Identity = 97/225 (43.11%), Postives = 136/225 (60.44%), Query Frame = 0


Query: 3   IACVVPSFIDIFYLLHIIIEFRTAFLPSSLPESGSAELTRDLAVIAKRYLSSNFIIDILS 62
           IACV  +FID FY++H++ +F T F+  S    G  EL      IA RYL S F+ID+LS
Sbjct: 123 IACVFRTFIDAFYVVHMLFQFHTGFITPSSSGFGRGELNEKHKDIALRYLGSYFLIDLLS 182

Query: 63  ILPLPQLLVLVIVPALKGSIPMKTKKFVKIAVLLQYIPRLLRIYPLCKEVVRTSGILTES 122
           ILP+PQ++VL IVP ++    +  K+ +K  +  QY+PR+ RIYPL KEV RTSG++TE+
Sbjct: 183 ILPIPQVVVLAIVPRMRRPASLVAKELLKWVIFCQYVPRIARIYPLFKEVTRTSGLVTET 242

Query: 123 S---AAFNLLIYMQASHVVGALWYLFSVEQHARCWLEACKK-NNCTSNFRYCGDPNRQAY 182
           +   AA NL +YM ASHV G+ WYL S+E+  RCW EAC K  NCT  + YC        
Sbjct: 243 AWAGAALNLFLYMLASHVFGSFWYLISIERKDRCWREACAKIQNCTHAYLYCSPTGEDNR 302

Query: 183 LFIDAYC---SHKESEGDNAFDFGMYVEAFKFHLTETMSFDVNSF 221
           LF++  C     +E      F+FG++ +A +  + E+  F    F
Sbjct: 303 LFLNGSCPLIDPEEITNSTVFNFGIFADALQSGVVESRDFPKKFF 347

The following BLAST results are available for this feature:

BLAST of Lsi05G021160 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O65717	2.4e-50	48.21	Cyclic nucleotide-gated ion channel 1 OS=Arabidopsis thaliana OX=3702 GN=CNGC1 P...	[more]
Q9LNJ0	5.2e-45	44.34	Probable cyclic nucleotide-gated ion channel 10 OS=Arabidopsis thaliana OX=3702 ...	[more]
Q9SKD7	9.8e-44	43.11	Probable cyclic nucleotide-gated ion channel 3 OS=Arabidopsis thaliana OX=3702 G...	[more]
Q9LD40	1.3e-43	45.95	Putative cyclic nucleotide-gated ion channel 13 OS=Arabidopsis thaliana OX=3702 ...	[more]
O82226	1.7e-40	41.85	Probable cyclic nucleotide-gated ion channel 6 OS=Arabidopsis thaliana OX=3702 G...	[more]

BLAST of Lsi05G021160 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U3S4	1.4e-98	88.99	Cyclic nucleotide-gated ion channel 1-like OS=Cucumis melo var. makuwa OX=119469...	[more]
A0A1S3AVP7	1.4e-98	88.99	cyclic nucleotide-gated ion channel 1-like OS=Cucumis melo OX=3656 GN=LOC1034831...	[more]
A0A5D3DBC3	3.2e-98	88.53	Cyclic nucleotide-gated ion channel 1-like OS=Cucumis melo var. makuwa OX=119469...	[more]
A0A6J1D1B4	8.8e-80	73.83	cyclic nucleotide-gated ion channel 1-like OS=Momordica charantia OX=3673 GN=LOC...	[more]
A0A6J1D2C8	3.1e-77	73.83	LOW QUALITY PROTEIN: cyclic nucleotide-gated ion channel 1-like OS=Momordica cha...	[more]

BLAST of Lsi05G021160 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0048896.1	3.0e-98	88.99	cyclic nucleotide-gated ion channel 1-like [Cucumis melo var. makuwa]	[more]
XP_008437904.1	3.0e-98	88.99	PREDICTED: cyclic nucleotide-gated ion channel 1-like [Cucumis melo]	[more]
TYK20846.1	6.6e-98	88.53	cyclic nucleotide-gated ion channel 1-like [Cucumis melo var. makuwa]	[more]
XP_022147438.1	1.8e-79	73.83	cyclic nucleotide-gated ion channel 1-like [Momordica charantia]	[more]
XP_022147437.1	6.5e-77	73.83	LOW QUALITY PROTEIN: cyclic nucleotide-gated ion channel 1-like [Momordica chara...	[more]

BLAST of Lsi05G021160 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G53130.1	1.7e-51	48.21	cyclic nucleotide gated channel 1	[more]
AT1G01340.1	3.7e-46	44.34	cyclic nucleotide gated channel 10	[more]
AT1G01340.2	3.7e-46	44.34	cyclic nucleotide gated channel 10	[more]
AT2G46430.1	7.0e-45	43.11	cyclic nucleotide gated channel 3	[more]
AT2G46430.2	7.0e-45	43.11	cyclic nucleotide gated channel 3	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.10.287.70		coord: 2..205 e-value: 2.4E-6 score: 29.1
None	No IPR available	PANTHER	PTHR45651	CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED	coord: 2..215
None	No IPR available	PANTHER	PTHR45651:SF5	CYCLIC NUCLEOTIDE-GATED ION CHANNEL 1	coord: 2..215
None	No IPR available	SUPERFAMILY	81324	Voltage-gated potassium channels	coord: 6..149
IPR005821	Ion transport domain	PFAM	PF00520	Ion_trans	coord: 3..214 e-value: 9.9E-16 score: 57.7

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi05G021160.1	Lsi05G021160.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0034220	ion transmembrane transport
biological_process	GO:0006811	ion transport
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
molecular_function	GO:0005216	ion channel activity