Lsi05G020520 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi05G020520
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	DNA replication complex GINS protein SLD5
Location	chr05: 27469151 .. 27473392 (+)
RNA-Seq Expression	Lsi05G020520
Synteny	Lsi05G020520

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAATCCATGCCTACACCCGAAACCGTAAGCTAGCTATGAACTGTTTATAGAGTTTTCTGATCAAATTTCGAAGGATCATAGAAAGGAAGATCCGACCCGACCCGAGTCAAAACCGAATTCCATACCAAAGTCTATTGCTATCTGCGCATTTTTCTCTAAACCCATCCGTTTTAAAAAAGAAAAGAAAATTGAAAGCCCGCCGAAGCATATGTTCATTCTTCCTTTGGCGCCATTCCGCTGCTGCCTTTGGCTCTTCTCCTAGAAGAAGAAACGCAATCGTTCTCTCAATCTCGCTATCTGCGTCTTTTTCCGTAAGTATTCCTTGAATTTTCATATGGAAATTTTCTTTTCCAGAACTGGTTTGGCTGAATTCACTGTTTTGTTTCTTCTGTTGTTGGGAGGGTTTTAAAATTTGAGCTACGAAGCTTGAGATTCGGAGTAGGTAAGTGGAAAGGTGGGAAGTATTCAGCAATTTGAGGGATCGAAGGAACGGAACTAACAATATATCAAAACTGTATATTAGGGTCTTTCTTTCTGCGTTCTGGAGGGGCGTCGATGTCACAAACAGATGATTTCGAGACATTCACTCCAACGACTGATGTCGAGCCTCTAAAGAGGGCCTGGTGTAATGAAAAGGCTGCTCCTGAAATTCTACCCTTTGAGGCATCTTTGGTTGGGAGAATCAAAGAGCAAATTCAATCGATGGTATTCCAGAACTCTGCTTCAATGCCTGTTTAGTTCCCTAACAATTGTAGGCAAAGAAAAACAGTTGGAATGTCACACCTAATGTAGTCCCCATGCTGTTATTTATCAAATAATTGAATATCATCTCTGGAATTTTAGTAATTGATTTCATTTTTATAAAATCTAGTTTCTAAAACTGCAATTTTAGTTCTTATATATGATTCTCAAAATTTATTATATAAATTTATAAAAGAATTTGTGCTTGTTCCATTAACGCTCTTTTGGTTCATATGGCACAATTTTAGCATAAAGATCTTCTTGGTAGCGAACTAAAAATACATGTTGATACATTGTTCTTGAATTGTAATAATTCTTCAATTATCTGGTCCATTTACTTTATTCATAGATTACTGACGTTGATACCATTTGTATCCATTCACAGGAAGATACTATAGAGGAATATTCAAGAAGTGGCATCGATCCCCTGATTGTATCACTCTATCAAATGGATTTAGATAGGACACAGTTCTTGTTGAGATCATATATTAGGAGTCGCTTGCAGAAGGTACAACCTGAATATTGTTTAATTTTGTTCAGAAACAGTAGTTGTGTTTTTTTTTCTCGTTTTTTCTTCTCTTTATATTTCATATAAGTTTATAATGATTTAATTGCATTTGAAATCATGAATCTGTACATTCCACATAATGACACAAGTGTGGAATGTACACATTCATGGGTTGTCCCGTGAGATTAGTCGAGATGCGCGTAAGCTGGCACGGACACTCATGGATATCCAAAGAAAAAAAAAAAAACTCCAATGAAAAAAAAAAAACTCCAATGAAAGGCAGCTTTTATACTAGGCCTTTTTGAAACATACATAAGCCACACATGAGCTTGACAGAAATAAAGTTTACTGGCTGCCGGCTGGTAACTAAAAATTACAGTAAGTAAAGAATTAAACAGAACACTACTTAAAAGAATACTTCTCTACCGAAGCACCCAACTAAATACATAAATGACCCTACTAGAAAATCAATTGAATTCTCCGATTTACGTTCCATGTATACTACTTTTTTCTTTTATTTTTTTTGTTTAATATCATCATAGCTTCAATTCCATGTATACTACTACTTCTCTTCTTTTAATTTTAAAACAATATTTCTCCCCCAGATTGAGAAGTACATGCTCTATATCTTGAAGTCAGATGAACTTTTCAGACGTCTTTCTAAAGAAGAGATAACATTTACTGATAGGTGAATGCTATCATCATGTTGTTCATTTTCTATTAGACTAGTAGTTTTTATTCATTAATTTTTTCTGGCATTCATGTTGTGGTGCAGGTGTCGTCATGATATGAAAAAACATTTTGATGAGAGTGTTCTATCAAAATTGCCAAATAATTATCAGGACATTTTGAGGCAATCTATAACAAGTGAAGAGGATGACATGGGTACTCAAACACCTTCAAAATAAATTCTTTGATTTTTTCCATAAAGCACTGTGATCACATGCTCTCACATTTTTTTTAAAAAAAATGTTCACGTTCTTGTTATGTATACATCAGTTTGAATCAGCAGATGGTAATGCATGTCGACACTGTGCAATTCCTTTAGAAGGATCAAGCTCGTTACAGAGCATTGATTAAATAGTCCATAATGGAGTTGCAATATATTTTAAGAACTTATGGTTCCAAAAGATTTAGATTTCTTTCAGTATTTCTATCAATTCAATGGAGCGTTTCTAAGATCTGCATAGGTGCTCAGAAGTATAACTTGTCTGATACATCAACGTGGTGTTCTCTGAGAATGTATTTCTATTTTCAATCTGCCGCCAATATTCTCACTTGCATACTTCTTAGTTTTTAGTAGGATGACTGGTCAAATGGTATGAATTTTGTTTTCCTTTATAAACTATGAGAAGATTTTTTTTTTTTTTTTTAAAATACTACTTTGGTCCCTATACTTTCAACCTTGGTTCATTTCTGTCCATTCATTTTCATTTTTATTTCATTTTAAGGGATGAAAAATCACTTTTTTACAGTACAGAGACGAAAATAAACATTTTGAAAGTACAGGGACTAAAAGTAGTAATGTAACCTTTTCTCCCTACCGAATTCAGCTTATTTCTGCATTGTATTCATTTGGAAGTTATTAGCAGATGTGTAATTTTGTTGACATTAAATCGATTAACTATATGTTATTTGAATCTTAATGATTCTGGTATTGTCTGATTCAGTTCCAGAACCTCCACTGGACACGTTTGTGGTTTGCAAAAGTAAGGAATATCTTGAGCATATACAGCTTGAGGATGAGGAAGAGAGAGCGTCTAGTAGAATGTAACCTTTCTTTTTCCTCTTTTGTATCATTTACTCCCTTTCTAATTTCCATTTTTTTTGGCTATTATGTATGACTATGTCCTACAACATATCAAATTCTTCAGAGAGGAGCCTTTTGAGATGGAGGCCAATGTATTGCACATTATTCGCTACAGGCCCATAAAATCACTTGTAGAGAGCGGGAGAATTGATTTGCTATAGACAATCTCCATAGCAGCTTTCAACATCGGTACCCCTCACCATCTTTATTATCTTGCATCTCGTCTTGGTCAATTTGTATGTGATAAAAGGCATTGTTCAAGTTTGTTTTGGTAGTTTCATGGCATTAATGTTAGTGACTGTTCCATAAAGTGAATAATGTTAAGTTGCAAGGTTTGAACCAATTCCTGGATGGTTTTTCAAGGTAGTCTAACAGGATGTCTTATTGCTAGTAAATGGTCCATAATGAACTGTGTAGAATCAGTGCAACCACCTGCTAAAATAGTCATGGCATCTACCTTGAACTTGAGTTTTGACATATTTTTATTTGTAGACAGATATTACTAAATTTTTTTAAACTTATATTATAAATTGATTTGATCACATTGGGAATTCGAACCTCTAATCTTTTGATCGAGGTGATAGTGTATTAACCATTTGAGCTATTCTCATATTGGGCTAATTTGAAGATAGATTTGTTTGAGATTTATCCGTACTTGACCTAAAATAAATCGTGTTGAAATTTATCCATAGACAAAAAAATTCATGTTCAATTAGTGTTTGGATTCAATCAAAATGAGCATCCAGATGCAAATTAAAAATTTTCAGAGATTATACTTGCAAAGAATAAATCTAAAAGCTCCTTTAGTCATTCCCTTTTATATTCTTCCCTTATATTATTGTAATTTCATTTTAAAGGTGATGGAGACCATTTCATTGGTTGCTTGGGTGCTAATTTTCAAAATTGGTTGAGCTCATAAATGAAAGGAATGGTAGAGCATTGAAGGCATTGGCAAAGGCTGGTGAGCCATTTCAATCTGATATCTCATGATATTAAATTATTAATATGGCATTACAGTGACATCTATTAGAAATGATAGATACTTTTAGGTTTTTATTTACAAGTTAGTCCCTAAACTTTGTGGTTTGTGTCTATTTGATAATTTTTAAAAATGTTTAATATGTCTCTTAACTTTCAGTTTTATATCTAAACTTTAAATAGTGTCTATTCAGCTGTGTCTAA

mRNA sequence

CAAATCCATGCCTACACCCGAAACCGTAAGCTAGCTATGAACTGTTTATAGAGTTTTCTGATCAAATTTCGAAGGATCATAGAAAGGAAGATCCGACCCGACCCGAGTCAAAACCGAATTCCATACCAAAGTCTATTGCTATCTGCGCATTTTTCTCTAAACCCATCCGTTTTAAAAAAGAAAAGAAAATTGAAAGCCCGCCGAAGCATATGTTCATTCTTCCTTTGGCGCCATTCCGCTGCTGCCTTTGGCTCTTCTCCTAGAAGAAGAAACGCAATCGTTCTCTCAATCTCGCTATCTGCGTCTTTTTCCGGTTTTAAAATTTGAGCTACGAAGCTTGAGATTCGGAGTAGGGTCTTTCTTTCTGCGTTCTGGAGGGGCGTCGATGTCACAAACAGATGATTTCGAGACATTCACTCCAACGACTGATGTCGAGCCTCTAAAGAGGGCCTGGTGTAATGAAAAGGCTGCTCCTGAAATTCTACCCTTTGAGGCATCTTTGGTTGGGAGAATCAAAGAGCAAATTCAATCGATGGAAGATACTATAGAGGAATATTCAAGAAGTGGCATCGATCCCCTGATTGTATCACTCTATCAAATGGATTTAGATAGGACACAGTTCTTGTTGAGATCATATATTAGGAGTCGCTTGCAGAAGGTACAACCTGAATATTGTTTAATTTTGTTCAGAAACATCGAGATGCGCATTGAGAAGTACATGCTCTATATCTTGAAGTCAGATGAACTTTTCAGACGTCTTTCTAAAGAAGAGATAACATTTACTGATAGGTGTCGTCATGATATGAAAAAACATTTTGATGAGAGTGTTCTATCAAAATTGCCAAATAATTATCAGGACATTTTGAGGCAATCTATAACAAGTGAAGAGGATGACATGGTTCCAGAACCTCCACTGGACACGTTTGTGGTTTGCAAAAGTAAGGAATATCTTGAGCATATACAGCTTGAGGATGAGGAAGAGAGAGCGTCTAGTAGAATAGAGGAGCCTTTTGAGATGGAGGCCAATGTATTGCACATTATTCGCTACAGGCCCATAAAATCACTTGTAGAGAGCGGGAGAATTGATTTGCTATAGACAATCTCCATAGCAGCTTTCAACATCGGTGATGGAGACCATTTCATTGGTTGCTTGGGTGCTAATTTTCAAAATTGGTTGAGCTCATAAATGAAAGGAATGGTAGAGCATTGAAGGCATTGGCAAAGGCTGGTGAGCCATTTCAATCTGATATCTCATGATATTAAATTATTAATATGGCATTACAGTGACATCTATTAGAAATGATAGATACTTTTAGGTTTTTATTTACAAGTTAGTCCCTAAACTTTGTGGTTTGTGTCTATTTGATAATTTTTAAAAATGTTTAATATGTCTCTTAACTTTCAGTTTTATATCTAAACTTTAAATAGTGTCTATTCAGCTGTGTCTAA

Coding sequence (CDS)

ATGTCACAAACAGATGATTTCGAGACATTCACTCCAACGACTGATGTCGAGCCTCTAAAGAGGGCCTGGTGTAATGAAAAGGCTGCTCCTGAAATTCTACCCTTTGAGGCATCTTTGGTTGGGAGAATCAAAGAGCAAATTCAATCGATGGAAGATACTATAGAGGAATATTCAAGAAGTGGCATCGATCCCCTGATTGTATCACTCTATCAAATGGATTTAGATAGGACACAGTTCTTGTTGAGATCATATATTAGGAGTCGCTTGCAGAAGGTACAACCTGAATATTGTTTAATTTTGTTCAGAAACATCGAGATGCGCATTGAGAAGTACATGCTCTATATCTTGAAGTCAGATGAACTTTTCAGACGTCTTTCTAAAGAAGAGATAACATTTACTGATAGGTGTCGTCATGATATGAAAAAACATTTTGATGAGAGTGTTCTATCAAAATTGCCAAATAATTATCAGGACATTTTGAGGCAATCTATAACAAGTGAAGAGGATGACATGGTTCCAGAACCTCCACTGGACACGTTTGTGGTTTGCAAAAGTAAGGAATATCTTGAGCATATACAGCTTGAGGATGAGGAAGAGAGAGCGTCTAGTAGAATAGAGGAGCCTTTTGAGATGGAGGCCAATGTATTGCACATTATTCGCTACAGGCCCATAAAATCACTTGTAGAGAGCGGGAGAATTGATTTGCTATAG

Protein sequence

MSQTDDFETFTPTTDVEPLKRAWCNEKAAPEILPFEASLVGRIKEQIQSMEDTIEEYSRSGIDPLIVSLYQMDLDRTQFLLRSYIRSRLQKVQPEYCLILFRNIEMRIEKYMLYILKSDELFRRLSKEEITFTDRCRHDMKKHFDESVLSKLPNNYQDILRQSITSEEDDMVPEPPLDTFVVCKSKEYLEHIQLEDEEERASSRIEEPFEMEANVLHIIRYRPIKSLVESGRIDLL

Homology

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BLAST of Lsi05G020520 vs. ExPASy Swiss-Prot
Match: Q99LZ3 (DNA replication complex GINS protein SLD5 OS=Mus musculus OX=10090 GN=Gins4 PE=1 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 3.1e-21
Identity = 75/233 (32.19%), Postives = 121/233 (51.93%), Query Frame = 0


Query: 11  TPTTDVEPLKRAWCNEKAAPEILPFEASLVGRIKEQIQSMEDTIEEYSRSGIDPLIVSLY 70
           TP   +E L++AW NEK APE+L  +A +V  + EQ++ ME+ +    R+    L VS++
Sbjct: 22  TPAELIEKLEQAWMNEKFAPELLESKAEIVECVMEQLEHMEENLR---RAKKGDLKVSIH 81

Query: 71  QMDLDRTQFLLRSYIRSRLQKVQPEYCLILFRNIEMRIEKYMLYILKSDELFRR-----L 130
           +M+++R +++L SY+R RL                M+IEK+  +IL+ +++        L
Sbjct: 82  RMEMERIRYVLSSYLRCRL----------------MKIEKFFPHILEKEKVRSEGEPSSL 141

Query: 131 SKEEITFTDRCRHDMKKHFDESVLSKLPNNYQ--DILRQSITSEEDDMVPEPPLDTFVVC 190
           S EE  F        + HF    L  +P N Q  D+LR          VP+P LD++V  
Sbjct: 142 SPEEFVFAKEYMDHTETHFKNVALKHMPPNLQKVDLLR---------AVPKPDLDSYVFL 201

Query: 191 KSKEYLEHIQLEDEEERASSRIEEPFEMEANVLHIIRYRPIKSLVESGRIDLL 237
           + KE  E+I +E E   A  + +   ++E    H+IRY+ I  LV SG + L+
Sbjct: 202 RVKERQENILVEPE---ADEQRDYVIDLEVGSQHLIRYKTIAPLVASGAVQLI 223

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BLAST of Lsi05G020520 vs. ExPASy Swiss-Prot
Match: A2VE40 (DNA replication complex GINS protein SLD5 OS=Bos taurus OX=9913 GN=GINS4 PE=2 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 2.0e-20
Identity = 72/233 (30.90%), Postives = 122/233 (52.36%), Query Frame = 0


Query: 11  TPTTDVEPLKRAWCNEKAAPEILPFEASLVGRIKEQIQSMEDTIEEYSRSGIDPLIVSLY 70
           TP   ++ L++AW NEK APE+L  ++ +V  + EQ++ ME+ ++   R+    L VS++
Sbjct: 22  TPAELIDRLEQAWMNEKFAPELLENKSEIVECVMEQLEHMEENLK---RAKKGDLKVSIH 81

Query: 71  QMDLDRTQFLLRSYIRSRLQKVQPEYCLILFRNIEMRIEKYMLYILKSDELFRR-----L 130
           QM+++R +F+L SY+R RL                M+IEK+  + L+ ++  R      L
Sbjct: 82  QMEMERIRFVLSSYLRCRL----------------MKIEKFFPHTLEKEKTRREEEPPIL 141

Query: 131 SKEEITFTDRCRHDMKKHFDESVLSKLPNNYQ--DILRQSITSEEDDMVPEPPLDTFVVC 190
           S EE+ F      + + +  ++ L  +P N Q  D+LR          VP+P LD +V  
Sbjct: 142 SPEELVFAKEFLANTETYLKDTALKHMPPNLQKVDLLR---------TVPKPDLDAYVFL 201

Query: 191 KSKEYLEHIQLEDEEERASSRIEEPFEMEANVLHIIRYRPIKSLVESGRIDLL 237
           + KE  E+I +E E +     +    ++E    H++RYR +  LV SG I L+
Sbjct: 202 RVKERQENILVEPENDEQRDYV---IDLEEGSQHLMRYRTVAPLVASGAIQLI 223

[Close]

BLAST of Lsi05G020520 vs. ExPASy Swiss-Prot
Match: Q499W2 (DNA replication complex GINS protein SLD5 OS=Rattus norvegicus OX=10116 GN=Gins4 PE=1 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 4.5e-20
Identity = 73/233 (31.33%), Postives = 120/233 (51.50%), Query Frame = 0


Query: 11  TPTTDVEPLKRAWCNEKAAPEILPFEASLVGRIKEQIQSMEDTIEEYSRSGIDPLIVSLY 70
           TP   +E L++AW NEK APE+L  ++ +V  + EQ++ ME+ +    R+    L VS++
Sbjct: 22  TPAELIERLEQAWMNEKFAPELLESKSEIVECVMEQLEHMEENLR---RAKKGDLKVSIH 81

Query: 71  QMDLDRTQFLLRSYIRSRLQKVQPEYCLILFRNIEMRIEKYMLYILKSDELF-----RRL 130
           +M+++R +++L SY+R RL                M+IEK+  +IL+ ++         L
Sbjct: 82  RMEMERIRYVLSSYLRCRL----------------MKIEKFFPHILEKEKTRPAGEPSSL 141

Query: 131 SKEEITFTDRCRHDMKKHFDESVLSKLPNNYQ--DILRQSITSEEDDMVPEPPLDTFVVC 190
           S EE  F        + HF    L  +P N Q  D++R          VP+P LD++V  
Sbjct: 142 SPEEFVFAKEYMDHTETHFKNVALKHMPPNLQKVDLMR---------AVPKPDLDSYVFL 201

Query: 191 KSKEYLEHIQLEDEEERASSRIEEPFEMEANVLHIIRYRPIKSLVESGRIDLL 237
           + KE  E+I +E E   A  + +   ++E    H+IRY+ I  LV SG + L+
Sbjct: 202 RVKERQENILVEPE---ADEQRDYVIDLEEGSQHLIRYKTIAPLVASGAVQLI 223

[Close]

BLAST of Lsi05G020520 vs. ExPASy Swiss-Prot
Match: Q9BRT9 (DNA replication complex GINS protein SLD5 OS=Homo sapiens OX=9606 GN=GINS4 PE=1 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 1.1e-18
Identity = 68/233 (29.18%), Postives = 118/233 (50.64%), Query Frame = 0


Query: 11  TPTTDVEPLKRAWCNEKAAPEILPFEASLVGRIKEQIQSMEDTIEEYSRSGIDPLIVSLY 70
           TP   +E L++AW NEK APE+L  +  +V  + EQ++ ME+ +    R   + L VS++
Sbjct: 22  TPAELIERLEQAWMNEKFAPELLESKPEIVECVMEQLEHMEENLRRAKR---EDLKVSIH 81

Query: 71  QMDLDRTQFLLRSYIRSRLQKVQPEYCLILFRNIEMRIEKYMLYILKSDELF-----RRL 130
           QM+++R +++L SY+R RL                M+IEK+  ++L+ ++         L
Sbjct: 82  QMEMERIRYVLSSYLRCRL----------------MKIEKFFPHVLEKEKTRPEGEPSSL 141

Query: 131 SKEEITFTDRCRHDMKKHFDESVLSKLPNNYQ--DILRQSITSEEDDMVPEPPLDTFVVC 190
           S EE+ F      + + +     L  +P N Q  D+ R          VP+P LD++V  
Sbjct: 142 SPEELAFAREFMANTESYLKNVALKHMPPNLQKVDLFR---------AVPKPDLDSYVFL 201

Query: 191 KSKEYLEHIQLEDEEERASSRIEEPFEMEANVLHIIRYRPIKSLVESGRIDLL 237
           + +E  E+I +E + +     +    ++E    H+IRY+ I  LV SG + L+
Sbjct: 202 RVRERQENILVEPDTDEQRDYV---IDLEKGSQHLIRYKTIAPLVASGAVQLI 223

[Close]

BLAST of Lsi05G020520 vs. ExPASy Swiss-Prot
Match: Q7ZT48 (DNA replication complex GINS protein SLD5 OS=Xenopus laevis OX=8355 GN=gins4 PE=1 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 2.5e-18
Identity = 73/239 (30.54%), Postives = 116/239 (48.54%), Query Frame = 0


Query: 5   DDFETFTPTTDVEPLKRAWCNEKAAPEILPFEASLVGRIKEQIQSMEDTIEEYSRSGIDP 64
           +D E  TP   +  L+ AW NEK APE+L  ++ +V  + EQ+  ME  +    R+    
Sbjct: 14  EDEEVLTPAELINKLEEAWLNEKFAPELLESKSEVVECVMEQLNHMEQNLH---RAKPGD 73

Query: 65  LIVSLYQMDLDRTQFLLRSYIRSRLQKVQPEYCLILFRNIEMRIEKYMLYILKSDELF-- 124
           L +S + M+++R +++L SY+RSR+                ++IEK+  +IL+ ++    
Sbjct: 74  LKISFHHMEIERIRYMLSSYLRSRM----------------LKIEKFFPHILEKEKSRGE 133

Query: 125 ---RRLSKEEITFTDRCRHDMKKHFDESVLSKLPNNYQ--DILRQSITSEEDDMVPEPPL 184
                LS EE  F      + +       L  +P N Q  D+L+          VP+P L
Sbjct: 134 GEPPHLSPEEFAFAKEYMTNTETLLKSVALRHMPPNLQTVDLLKS---------VPKPNL 193

Query: 185 DTFVVCKSKEYLEHIQLEDEEERASSRIEEPFEMEANVLHIIRYRPIKSLVESGRIDLL 237
           D+FV  + KE   +I +E E +  S   E   +ME    H+IRYR I  LV SG + L+
Sbjct: 194 DSFVFLRVKEEQNNILVEPETDEQS---EYAIDMEVGSQHLIRYRTIAPLVASGAVKLI 221

[Close]

BLAST of Lsi05G020520 vs. ExPASy TrEMBL
Match: A0A1S3AVG5 (DNA replication complex GINS protein SLD5 OS=Cucumis melo OX=3656 GN=LOC103483259 PE=3 SV=1)

HSP 1 Score: 406.8 bits (1044), Expect = 6.4e-110
Identity = 212/236 (89.83%), Postives = 218/236 (92.37%), Query Frame = 0


Query: 1   MSQTDDFETFTPTTDVEPLKRAWCNEKAAPEILPFEASLVGRIKEQIQSMEDTIEEYSRS 60
           +SQTDDFETFTPTTDVEPLKRAW NEKAAPEILP+EASLVGRIKEQIQ+MED+IEEYSRS
Sbjct: 10  ISQTDDFETFTPTTDVEPLKRAWRNEKAAPEILPYEASLVGRIKEQIQAMEDSIEEYSRS 69

Query: 61  GIDPLIVSLYQMDLDRTQFLLRSYIRSRLQKVQPEYCLILFRNIEMRIEKYMLYILKSDE 120
           GIDPLIVSLYQMDLDR QFLLRSYIRSRLQK                IEKYMLYILKSDE
Sbjct: 70  GIDPLIVSLYQMDLDRIQFLLRSYIRSRLQK----------------IEKYMLYILKSDE 129

Query: 121 LFRRLSKEEITFTDRCRHDMKKHFDESVLSKLPNNYQDILRQSITSEEDDMVPEPPLDTF 180
           LFRRLSKEEITFTDRCRHDMKKHFDESVLSKLPNNYQD+L+QSITSEEDDMVPEPPLDTF
Sbjct: 130 LFRRLSKEEITFTDRCRHDMKKHFDESVLSKLPNNYQDVLKQSITSEEDDMVPEPPLDTF 189

Query: 181 VVCKSKEYLEHIQLEDEEERASSRIEEPFEMEANVLHIIRYRPIKSLVESGRIDLL 237
           VVCKSKEYLEHIQLEDEEERASSRIEEPFEMEANVLHIIRYRPIKSLVESGRIDLL
Sbjct: 190 VVCKSKEYLEHIQLEDEEERASSRIEEPFEMEANVLHIIRYRPIKSLVESGRIDLL 229

[Close]

BLAST of Lsi05G020520 vs. ExPASy TrEMBL
Match: A0A0A0L8W0 (DNA replication complex GINS protein SLD5 OS=Cucumis sativus OX=3659 GN=Csa_3G121760 PE=3 SV=1)

HSP 1 Score: 405.2 bits (1040), Expect = 1.9e-109
Identity = 212/236 (89.83%), Postives = 217/236 (91.95%), Query Frame = 0


Query: 1   MSQTDDFETFTPTTDVEPLKRAWCNEKAAPEILPFEASLVGRIKEQIQSMEDTIEEYSRS 60
           +SQTDDFETFTPTTDVEPLKRAW NEKAAPEILP+EASLVGRIKEQIQ+MEDTIEEYSRS
Sbjct: 10  ISQTDDFETFTPTTDVEPLKRAWRNEKAAPEILPYEASLVGRIKEQIQAMEDTIEEYSRS 69

Query: 61  GIDPLIVSLYQMDLDRTQFLLRSYIRSRLQKVQPEYCLILFRNIEMRIEKYMLYILKSDE 120
           GIDPLIVSLYQMDLDR QFLLRSYIRSRLQK                IEKYMLYILKSDE
Sbjct: 70  GIDPLIVSLYQMDLDRVQFLLRSYIRSRLQK----------------IEKYMLYILKSDE 129

Query: 121 LFRRLSKEEITFTDRCRHDMKKHFDESVLSKLPNNYQDILRQSITSEEDDMVPEPPLDTF 180
           LF RLS+EEITFTDRCRHDMKKHFDESVLSKLPNNYQDIL+QSITSEEDDMVPEPPLDTF
Sbjct: 130 LFGRLSREEITFTDRCRHDMKKHFDESVLSKLPNNYQDILKQSITSEEDDMVPEPPLDTF 189

Query: 181 VVCKSKEYLEHIQLEDEEERASSRIEEPFEMEANVLHIIRYRPIKSLVESGRIDLL 237
           VVCKSKEYLEHIQLEDEEERASSRIEEPFEMEANVLHIIRYRPIKSLVESGRIDLL
Sbjct: 190 VVCKSKEYLEHIQLEDEEERASSRIEEPFEMEANVLHIIRYRPIKSLVESGRIDLL 229

[Close]

BLAST of Lsi05G020520 vs. ExPASy TrEMBL
Match: A0A6J1J098 (DNA replication complex GINS protein SLD5 OS=Cucurbita maxima OX=3661 GN=LOC111480093 PE=3 SV=1)

HSP 1 Score: 402.1 bits (1032), Expect = 1.6e-108
Identity = 211/236 (89.41%), Postives = 215/236 (91.10%), Query Frame = 0


Query: 1   MSQTDDFETFTPTTDVEPLKRAWCNEKAAPEILPFEASLVGRIKEQIQSMEDTIEEYSRS 60
           +SQTDDFETFTPTTDVEPLKRAW NEKAAPEILPFEASLVGRIKEQIQ MEDTIEEYSRS
Sbjct: 10  VSQTDDFETFTPTTDVEPLKRAWRNEKAAPEILPFEASLVGRIKEQIQLMEDTIEEYSRS 69

Query: 61  GIDPLIVSLYQMDLDRTQFLLRSYIRSRLQKVQPEYCLILFRNIEMRIEKYMLYILKSDE 120
           GIDPLIVSLYQMDLDRTQFLLRSYIR RLQK                IEKYMLYILKSDE
Sbjct: 70  GIDPLIVSLYQMDLDRTQFLLRSYIRIRLQK----------------IEKYMLYILKSDE 129

Query: 121 LFRRLSKEEITFTDRCRHDMKKHFDESVLSKLPNNYQDILRQSITSEEDDMVPEPPLDTF 180
           LFRRLS+EEITFTDRC HDMKKHFDESVLSKLPNNYQDILRQSI SEEDDMVPEPPLDTF
Sbjct: 130 LFRRLSEEEITFTDRCSHDMKKHFDESVLSKLPNNYQDILRQSIISEEDDMVPEPPLDTF 189

Query: 181 VVCKSKEYLEHIQLEDEEERASSRIEEPFEMEANVLHIIRYRPIKSLVESGRIDLL 237
           VVCKSKEYLEHIQLEDEEERASSR+EEPFEMEANVLHIIRY+PIKSLVESGRIDLL
Sbjct: 190 VVCKSKEYLEHIQLEDEEERASSRVEEPFEMEANVLHIIRYKPIKSLVESGRIDLL 229

[Close]

BLAST of Lsi05G020520 vs. ExPASy TrEMBL
Match: A0A6J1E9C0 (DNA replication complex GINS protein SLD5 OS=Cucurbita moschata OX=3662 GN=LOC111431969 PE=3 SV=1)

HSP 1 Score: 402.1 bits (1032), Expect = 1.6e-108
Identity = 211/236 (89.41%), Postives = 215/236 (91.10%), Query Frame = 0


Query: 1   MSQTDDFETFTPTTDVEPLKRAWCNEKAAPEILPFEASLVGRIKEQIQSMEDTIEEYSRS 60
           +SQTDDFETFTPTTDVEPLKRAW NEKAAPEILPFEASLVGRIKEQIQ MEDTIEEYSRS
Sbjct: 10  VSQTDDFETFTPTTDVEPLKRAWRNEKAAPEILPFEASLVGRIKEQIQLMEDTIEEYSRS 69

Query: 61  GIDPLIVSLYQMDLDRTQFLLRSYIRSRLQKVQPEYCLILFRNIEMRIEKYMLYILKSDE 120
           GIDPLIVSLYQMDLDRTQFLLRSYIR RLQK                IEKYMLYILKSDE
Sbjct: 70  GIDPLIVSLYQMDLDRTQFLLRSYIRIRLQK----------------IEKYMLYILKSDE 129

Query: 121 LFRRLSKEEITFTDRCRHDMKKHFDESVLSKLPNNYQDILRQSITSEEDDMVPEPPLDTF 180
           LFRRLS+EEITFTDRC HDMKKHFDESVLSKLPNNYQDILRQSI SEEDDMVPEPPLDTF
Sbjct: 130 LFRRLSEEEITFTDRCSHDMKKHFDESVLSKLPNNYQDILRQSIISEEDDMVPEPPLDTF 189

Query: 181 VVCKSKEYLEHIQLEDEEERASSRIEEPFEMEANVLHIIRYRPIKSLVESGRIDLL 237
           VVCKSKEYLEHIQLEDEEERASSR+EEPFEMEANVLHIIRY+PIKSLVESGRIDLL
Sbjct: 190 VVCKSKEYLEHIQLEDEEERASSRVEEPFEMEANVLHIIRYKPIKSLVESGRIDLL 229

[Close]

BLAST of Lsi05G020520 vs. ExPASy TrEMBL
Match: A0A6J1D0B0 (DNA replication complex GINS protein SLD5 OS=Momordica charantia OX=3673 GN=LOC111016396 PE=3 SV=1)

HSP 1 Score: 374.8 bits (961), Expect = 2.7e-100
Identity = 197/236 (83.47%), Postives = 206/236 (87.29%), Query Frame = 0


Query: 1   MSQTDDFETFTPTTDVEPLKRAWCNEKAAPEILPFEASLVGRIKEQIQSMEDTIEEYSRS 60
           MSQTDDFE  TPT DVEPLKRAW NEKAAPEILPFEASL+GRIKEQIQ ME+TIEEYSRS
Sbjct: 11  MSQTDDFEASTPTNDVEPLKRAWRNEKAAPEILPFEASLIGRIKEQIQLMEETIEEYSRS 70

Query: 61  GIDPLIVSLYQMDLDRTQFLLRSYIRSRLQKVQPEYCLILFRNIEMRIEKYMLYILKSDE 120
           GIDPLIVSLYQMDLDRTQFLLRSYIR RLQK                IEKYMLY+LKSDE
Sbjct: 71  GIDPLIVSLYQMDLDRTQFLLRSYIRIRLQK----------------IEKYMLYMLKSDE 130

Query: 121 LFRRLSKEEITFTDRCRHDMKKHFDESVLSKLPNNYQDILRQSITSEEDDMVPEPPLDTF 180
           LF RLS+EE  F +RC HD+K HFDESVLSKLPNNYQ ILRQSI SEEDDMVPEPPLDTF
Sbjct: 131 LFGRLSEEERVFAERCCHDVKSHFDESVLSKLPNNYQSILRQSIISEEDDMVPEPPLDTF 190

Query: 181 VVCKSKEYLEHIQLEDEEERASSRIEEPFEMEANVLHIIRYRPIKSLVESGRIDLL 237
           VVCKSKEYLEHIQLEDE+ERASSR+EEPFEMEANVLHIIRY+PIKSLVESGRIDLL
Sbjct: 191 VVCKSKEYLEHIQLEDEDERASSRLEEPFEMEANVLHIIRYKPIKSLVESGRIDLL 230

[Close]

BLAST of Lsi05G020520 vs. NCBI nr
Match: XP_008438015.1 (PREDICTED: DNA replication complex GINS protein SLD5 isoform X1 [Cucumis melo] >XP_008438016.1 PREDICTED: DNA replication complex GINS protein SLD5 isoform X1 [Cucumis melo] >XP_008438017.1 PREDICTED: DNA replication complex GINS protein SLD5 isoform X1 [Cucumis melo])

HSP 1 Score: 406.8 bits (1044), Expect = 1.3e-109
Identity = 212/236 (89.83%), Postives = 218/236 (92.37%), Query Frame = 0


Query: 1   MSQTDDFETFTPTTDVEPLKRAWCNEKAAPEILPFEASLVGRIKEQIQSMEDTIEEYSRS 60
           +SQTDDFETFTPTTDVEPLKRAW NEKAAPEILP+EASLVGRIKEQIQ+MED+IEEYSRS
Sbjct: 10  ISQTDDFETFTPTTDVEPLKRAWRNEKAAPEILPYEASLVGRIKEQIQAMEDSIEEYSRS 69

Query: 61  GIDPLIVSLYQMDLDRTQFLLRSYIRSRLQKVQPEYCLILFRNIEMRIEKYMLYILKSDE 120
           GIDPLIVSLYQMDLDR QFLLRSYIRSRLQK                IEKYMLYILKSDE
Sbjct: 70  GIDPLIVSLYQMDLDRIQFLLRSYIRSRLQK----------------IEKYMLYILKSDE 129

Query: 121 LFRRLSKEEITFTDRCRHDMKKHFDESVLSKLPNNYQDILRQSITSEEDDMVPEPPLDTF 180
           LFRRLSKEEITFTDRCRHDMKKHFDESVLSKLPNNYQD+L+QSITSEEDDMVPEPPLDTF
Sbjct: 130 LFRRLSKEEITFTDRCRHDMKKHFDESVLSKLPNNYQDVLKQSITSEEDDMVPEPPLDTF 189

Query: 181 VVCKSKEYLEHIQLEDEEERASSRIEEPFEMEANVLHIIRYRPIKSLVESGRIDLL 237
           VVCKSKEYLEHIQLEDEEERASSRIEEPFEMEANVLHIIRYRPIKSLVESGRIDLL
Sbjct: 190 VVCKSKEYLEHIQLEDEEERASSRIEEPFEMEANVLHIIRYRPIKSLVESGRIDLL 229

[Close]

BLAST of Lsi05G020520 vs. NCBI nr
Match: XP_004134322.2 (DNA replication complex GINS protein SLD5 isoform X1 [Cucumis sativus] >XP_011650740.1 DNA replication complex GINS protein SLD5 isoform X1 [Cucumis sativus] >KGN56501.1 hypothetical protein Csa_011248 [Cucumis sativus])

HSP 1 Score: 405.2 bits (1040), Expect = 3.8e-109
Identity = 212/236 (89.83%), Postives = 217/236 (91.95%), Query Frame = 0


Query: 1   MSQTDDFETFTPTTDVEPLKRAWCNEKAAPEILPFEASLVGRIKEQIQSMEDTIEEYSRS 60
           +SQTDDFETFTPTTDVEPLKRAW NEKAAPEILP+EASLVGRIKEQIQ+MEDTIEEYSRS
Sbjct: 10  ISQTDDFETFTPTTDVEPLKRAWRNEKAAPEILPYEASLVGRIKEQIQAMEDTIEEYSRS 69

Query: 61  GIDPLIVSLYQMDLDRTQFLLRSYIRSRLQKVQPEYCLILFRNIEMRIEKYMLYILKSDE 120
           GIDPLIVSLYQMDLDR QFLLRSYIRSRLQK                IEKYMLYILKSDE
Sbjct: 70  GIDPLIVSLYQMDLDRVQFLLRSYIRSRLQK----------------IEKYMLYILKSDE 129

Query: 121 LFRRLSKEEITFTDRCRHDMKKHFDESVLSKLPNNYQDILRQSITSEEDDMVPEPPLDTF 180
           LF RLS+EEITFTDRCRHDMKKHFDESVLSKLPNNYQDIL+QSITSEEDDMVPEPPLDTF
Sbjct: 130 LFGRLSREEITFTDRCRHDMKKHFDESVLSKLPNNYQDILKQSITSEEDDMVPEPPLDTF 189

Query: 181 VVCKSKEYLEHIQLEDEEERASSRIEEPFEMEANVLHIIRYRPIKSLVESGRIDLL 237
           VVCKSKEYLEHIQLEDEEERASSRIEEPFEMEANVLHIIRYRPIKSLVESGRIDLL
Sbjct: 190 VVCKSKEYLEHIQLEDEEERASSRIEEPFEMEANVLHIIRYRPIKSLVESGRIDLL 229

[Close]

BLAST of Lsi05G020520 vs. NCBI nr
Match: XP_022924491.1 (DNA replication complex GINS protein SLD5 [Cucurbita moschata] >XP_022924492.1 DNA replication complex GINS protein SLD5 [Cucurbita moschata] >XP_022924493.1 DNA replication complex GINS protein SLD5 [Cucurbita moschata] >XP_022924494.1 DNA replication complex GINS protein SLD5 [Cucurbita moschata] >XP_022924495.1 DNA replication complex GINS protein SLD5 [Cucurbita moschata] >XP_022980813.1 DNA replication complex GINS protein SLD5 [Cucurbita maxima] >XP_022980814.1 DNA replication complex GINS protein SLD5 [Cucurbita maxima] >XP_022980816.1 DNA replication complex GINS protein SLD5 [Cucurbita maxima] >XP_022980817.1 DNA replication complex GINS protein SLD5 [Cucurbita maxima] >XP_022980818.1 DNA replication complex GINS protein SLD5 [Cucurbita maxima] >XP_023526386.1 DNA replication complex GINS protein SLD5 [Cucurbita pepo subsp. pepo] >XP_023526387.1 DNA replication complex GINS protein SLD5 [Cucurbita pepo subsp. pepo] >XP_023526388.1 DNA replication complex GINS protein SLD5 [Cucurbita pepo subsp. pepo] >KAG6582622.1 DNA replication complex GINS protein SLD5, partial [Cucurbita argyrosperma subsp. sororia] >KAG7019017.1 DNA replication complex GINS protein SLD5, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 402.1 bits (1032), Expect = 3.2e-108
Identity = 211/236 (89.41%), Postives = 215/236 (91.10%), Query Frame = 0


Query: 1   MSQTDDFETFTPTTDVEPLKRAWCNEKAAPEILPFEASLVGRIKEQIQSMEDTIEEYSRS 60
           +SQTDDFETFTPTTDVEPLKRAW NEKAAPEILPFEASLVGRIKEQIQ MEDTIEEYSRS
Sbjct: 10  VSQTDDFETFTPTTDVEPLKRAWRNEKAAPEILPFEASLVGRIKEQIQLMEDTIEEYSRS 69

Query: 61  GIDPLIVSLYQMDLDRTQFLLRSYIRSRLQKVQPEYCLILFRNIEMRIEKYMLYILKSDE 120
           GIDPLIVSLYQMDLDRTQFLLRSYIR RLQK                IEKYMLYILKSDE
Sbjct: 70  GIDPLIVSLYQMDLDRTQFLLRSYIRIRLQK----------------IEKYMLYILKSDE 129

Query: 121 LFRRLSKEEITFTDRCRHDMKKHFDESVLSKLPNNYQDILRQSITSEEDDMVPEPPLDTF 180
           LFRRLS+EEITFTDRC HDMKKHFDESVLSKLPNNYQDILRQSI SEEDDMVPEPPLDTF
Sbjct: 130 LFRRLSEEEITFTDRCSHDMKKHFDESVLSKLPNNYQDILRQSIISEEDDMVPEPPLDTF 189

Query: 181 VVCKSKEYLEHIQLEDEEERASSRIEEPFEMEANVLHIIRYRPIKSLVESGRIDLL 237
           VVCKSKEYLEHIQLEDEEERASSR+EEPFEMEANVLHIIRY+PIKSLVESGRIDLL
Sbjct: 190 VVCKSKEYLEHIQLEDEEERASSRVEEPFEMEANVLHIIRYKPIKSLVESGRIDLL 229

[Close]

BLAST of Lsi05G020520 vs. NCBI nr
Match: XP_022147485.1 (DNA replication complex GINS protein SLD5 [Momordica charantia])

HSP 1 Score: 374.8 bits (961), Expect = 5.5e-100
Identity = 197/236 (83.47%), Postives = 206/236 (87.29%), Query Frame = 0


Query: 1   MSQTDDFETFTPTTDVEPLKRAWCNEKAAPEILPFEASLVGRIKEQIQSMEDTIEEYSRS 60
           MSQTDDFE  TPT DVEPLKRAW NEKAAPEILPFEASL+GRIKEQIQ ME+TIEEYSRS
Sbjct: 11  MSQTDDFEASTPTNDVEPLKRAWRNEKAAPEILPFEASLIGRIKEQIQLMEETIEEYSRS 70

Query: 61  GIDPLIVSLYQMDLDRTQFLLRSYIRSRLQKVQPEYCLILFRNIEMRIEKYMLYILKSDE 120
           GIDPLIVSLYQMDLDRTQFLLRSYIR RLQK                IEKYMLY+LKSDE
Sbjct: 71  GIDPLIVSLYQMDLDRTQFLLRSYIRIRLQK----------------IEKYMLYMLKSDE 130

Query: 121 LFRRLSKEEITFTDRCRHDMKKHFDESVLSKLPNNYQDILRQSITSEEDDMVPEPPLDTF 180
           LF RLS+EE  F +RC HD+K HFDESVLSKLPNNYQ ILRQSI SEEDDMVPEPPLDTF
Sbjct: 131 LFGRLSEEERVFAERCCHDVKSHFDESVLSKLPNNYQSILRQSIISEEDDMVPEPPLDTF 190

Query: 181 VVCKSKEYLEHIQLEDEEERASSRIEEPFEMEANVLHIIRYRPIKSLVESGRIDLL 237
           VVCKSKEYLEHIQLEDE+ERASSR+EEPFEMEANVLHIIRY+PIKSLVESGRIDLL
Sbjct: 191 VVCKSKEYLEHIQLEDEDERASSRLEEPFEMEANVLHIIRYKPIKSLVESGRIDLL 230

[Close]

BLAST of Lsi05G020520 vs. NCBI nr
Match: TYK17610.1 (DNA replication complex GINS protein SLD5 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 348.6 bits (893), Expect = 4.2e-92
Identity = 182/205 (88.78%), Postives = 187/205 (91.22%), Query Frame = 0


Query: 1   MSQTDDFETFTPTTDVEPLKRAWCNEKAAPEILPFEASLVGRIKEQIQSMEDTIEEYSRS 60
           +SQTDDFETFTPTTDVEPLKRAW NEKAAPEILP+EASLVGRIKEQIQ+MEDTIEEYSRS
Sbjct: 10  ISQTDDFETFTPTTDVEPLKRAWRNEKAAPEILPYEASLVGRIKEQIQAMEDTIEEYSRS 69

Query: 61  GIDPLIVSLYQMDLDRTQFLLRSYIRSRLQKVQPEYCLILFRNIEMRIEKYMLYILKSDE 120
           GIDPLIVSLYQMDLDR QFLLRSYIRSRLQK                IEKYMLYILKSDE
Sbjct: 70  GIDPLIVSLYQMDLDRIQFLLRSYIRSRLQK----------------IEKYMLYILKSDE 129

Query: 121 LFRRLSKEEITFTDRCRHDMKKHFDESVLSKLPNNYQDILRQSITSEEDDMVPEPPLDTF 180
           LFRRLSKEEITFTDRCRHDMKKHFDESVLSKLPNNYQDIL+QSITSEEDDMVPEPPLDTF
Sbjct: 130 LFRRLSKEEITFTDRCRHDMKKHFDESVLSKLPNNYQDILKQSITSEEDDMVPEPPLDTF 189

Query: 181 VVCKSKEYLEHIQLEDEEERASSRI 206
           VVCKSKEYLEHIQLEDEEERASSR+
Sbjct: 190 VVCKSKEYLEHIQLEDEEERASSRM 198

[Close]

BLAST of Lsi05G020520 vs. TAIR 10
Match: AT5G49010.1 (DNA replication protein-related )

HSP 1 Score: 227.6 bits (579), Expect = 1.0e-59
Identity = 125/231 (54.11%), Postives = 161/231 (69.70%), Query Frame = 0


Query: 6   DFETFTPTTDVEPLKRAWCNEKAAPEILPFEASLVGRIKEQIQSMEDTIEEYSRSGIDPL 65
           D+ET   T+DVE LKRAW NEKAAPEIL +E +LV R KEQI+ +E+TIE+Y  +GIDPL
Sbjct: 12  DYETLMSTSDVELLKRAWRNEKAAPEILQYEGALVDRAKEQIELVEETIEDYVENGIDPL 71

Query: 66  IVSLYQMDLDRTQFLLRSYIRSRLQKVQPEYCLILFRNIEMRIEKYMLYILKSDELFRRL 125
           +VSLYQMDLDR QFLLRSY+R RL                ++IEK+M + L S+E  RRL
Sbjct: 72  VVSLYQMDLDRAQFLLRSYLRVRL----------------LKIEKFMFHNLNSEEAERRL 131

Query: 126 SKEEITFTDRCRHDMKKHFDESVLSKLPNNYQDILRQSITSEEDDMVPEPPLDTFVVCKS 185
           S++E  F  RC  D+ KHF+E+VL KLP NYQ +L+QS+ SE DDMVP+P LDTFVVC+S
Sbjct: 132 SEQEKVFATRCADDLAKHFEETVLLKLPENYQSVLKQSLISEVDDMVPQPHLDTFVVCRS 191

Query: 186 KEYLEHIQLEDEEERASSRIEEPFEMEANVLHIIRYRPIKSLVESGRIDLL 237
           K ++  + L +E E       E  EME   L+ IRY+ +K  +ESG+IDL+
Sbjct: 192 KNFVS-LNLYEEGES-----PETVEMERGDLYFIRYKIVKRAIESGQIDLI 220

[Close]

BLAST of Lsi05G020520 vs. TAIR 10
Match: AT5G49010.2 (DNA replication protein-related )

HSP 1 Score: 180.3 bits (456), Expect = 1.9e-45
Identity = 95/166 (57.23%), Postives = 119/166 (71.69%), Query Frame = 0


Query: 6   DFETFTPTTDVEPLKRAWCNEKAAPEILPFEASLVGRIKEQIQSMEDTIEEYSRSGIDPL 65
           D+ET   T+DVE LKRAW NEKAAPEIL +E +LV R KEQI+ +E+TIE+Y  +GIDPL
Sbjct: 12  DYETLMSTSDVELLKRAWRNEKAAPEILQYEGALVDRAKEQIELVEETIEDYVENGIDPL 71

Query: 66  IVSLYQMDLDRTQFLLRSYIRSRLQKVQPEYCLILFRNIEMRIEKYMLYILKSDELFRRL 125
           +VSLYQMDLDR QFLLRSY+R RL                ++IEK+M + L S+E  RRL
Sbjct: 72  VVSLYQMDLDRAQFLLRSYLRVRL----------------LKIEKFMFHNLNSEEAERRL 131

Query: 126 SKEEITFTDRCRHDMKKHFDESVLSKLPNNYQDILRQSITSEEDDM 172
           S++E  F  RC  D+ KHF+E+VL KLP NYQ +L+QS+ SE DDM
Sbjct: 132 SEQEKVFATRCADDLAKHFEETVLLKLPENYQSVLKQSLISEVDDM 161

The following BLAST results are available for this feature:

BLAST of Lsi05G020520 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q99LZ3	3.1e-21	32.19	DNA replication complex GINS protein SLD5 OS=Mus musculus OX=10090 GN=Gins4 PE=1...	[more]
A2VE40	2.0e-20	30.90	DNA replication complex GINS protein SLD5 OS=Bos taurus OX=9913 GN=GINS4 PE=2 SV...	[more]
Q499W2	4.5e-20	31.33	DNA replication complex GINS protein SLD5 OS=Rattus norvegicus OX=10116 GN=Gins4...	[more]
Q9BRT9	1.1e-18	29.18	DNA replication complex GINS protein SLD5 OS=Homo sapiens OX=9606 GN=GINS4 PE=1 ...	[more]
Q7ZT48	2.5e-18	30.54	DNA replication complex GINS protein SLD5 OS=Xenopus laevis OX=8355 GN=gins4 PE=...	[more]

BLAST of Lsi05G020520 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3AVG5	6.4e-110	89.83	DNA replication complex GINS protein SLD5 OS=Cucumis melo OX=3656 GN=LOC10348325...	[more]
A0A0A0L8W0	1.9e-109	89.83	DNA replication complex GINS protein SLD5 OS=Cucumis sativus OX=3659 GN=Csa_3G12...	[more]
A0A6J1J098	1.6e-108	89.41	DNA replication complex GINS protein SLD5 OS=Cucurbita maxima OX=3661 GN=LOC1114...	[more]
A0A6J1E9C0	1.6e-108	89.41	DNA replication complex GINS protein SLD5 OS=Cucurbita moschata OX=3662 GN=LOC11...	[more]
A0A6J1D0B0	2.7e-100	83.47	DNA replication complex GINS protein SLD5 OS=Momordica charantia OX=3673 GN=LOC1...	[more]

BLAST of Lsi05G020520 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008438015.1	1.3e-109	89.83	PREDICTED: DNA replication complex GINS protein SLD5 isoform X1 [Cucumis melo] >...	[more]
XP_004134322.2	3.8e-109	89.83	DNA replication complex GINS protein SLD5 isoform X1 [Cucumis sativus] >XP_01165...	[more]
XP_022924491.1	3.2e-108	89.41	DNA replication complex GINS protein SLD5 [Cucurbita moschata] >XP_022924492.1 D...	[more]
XP_022147485.1	5.5e-100	83.47	DNA replication complex GINS protein SLD5 [Momordica charantia]	[more]
TYK17610.1	4.2e-92	88.78	DNA replication complex GINS protein SLD5 isoform X1 [Cucumis melo var. makuwa]	[more]

BLAST of Lsi05G020520 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G49010.1	1.0e-59	54.11	DNA replication protein-related	[more]
AT5G49010.2	1.9e-45	57.23	DNA replication protein-related	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 40..60
None	No IPR available	GENE3D	1.20.58.1030		coord: 2..226 e-value: 4.5E-61 score: 208.0
None	No IPR available	SUPERFAMILY	160059	PriA/YqbF domain	coord: 177..236
IPR008591	GINS complex subunit Sld5	PIRSF	PIRSF007764	GINS_Sld5	coord: 1..236 e-value: 1.1E-52 score: 176.9
IPR008591	GINS complex subunit Sld5	PANTHER	PTHR21206	SLD5 PROTEIN	coord: 1..236
IPR031633	DNA replication complex GINS protein SLD5, C-terminal	PFAM	PF16922	SLD5_C	coord: 175..236 e-value: 6.9E-14 score: 51.8
IPR038749	GINS complex protein Sld5, alpha-helical domain	CDD	cd11711	GINS_A_Sld5	coord: 15..149 e-value: 3.28051E-40 score: 132.349
IPR036224	GINS, helical bundle-like domain superfamily	SUPERFAMILY	158573	GINS helical bundle-like	coord: 11..161

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi05G020520.1	Lsi05G020520.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006261	DNA-dependent DNA replication
biological_process	GO:0000727	double-strand break repair via break-induced replication
cellular_component	GO:0000811	GINS complex