Lsi05G019390 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi05G019390
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Receptor-like kinase
Location	chr05: 26565583 .. 26566230 (+)
RNA-Seq Expression	Lsi05G019390
Synteny	Lsi05G019390

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAACCATTTTTTCCTCCTTTTCCAATCTCACGCTTTTGAAATCCATATACTTAGATAACAATAATCTGACCGGCCAAGTACCCCAAGGTTTGACTAAACTAACCCGACTCCACTACTTTGATATTTCTAATAACAATCTCAGTGGACCCTTACCAAAATTTAGTGCATCGAATGAAGTCACCACGTATGGCAATCCACTTCTAGAAACGACCTCAACTATACCACCAATTAGTAGTATGCCGCCGCAGATAAGCAGCATGGTGCCTACGGGAAACCGAGGAGATGATGGACAAATTAGTGGAAATGGAAATATAAAATTGATAATAGGTATTATTATTGGTGGTGTTTTACTTGTTGCATGCATTATTGGCTGCATAATTTTCTTCAAACGTTACCACCAGGGACTTCACCCTAGCCAGCTGAGCCAGAGCCAAGTTGAAAATATGGTGTTTTCCTTTGGATTATTGCAAAGAGTCACCAATAGCTTTGATGAGCAGTACATTTTAGGGCGAGGAGCATCTGGTGTTGTTTACAAAGGGGAACTCAAAAATGGAATGAAAGTTGCAGTTAATAAAATAAACTCGATAGCCATGGAAACCATGGGATACACAATAGTTATTTTACTTCTCTTGTGCATGCTCTAA

mRNA sequence

ATGGAAACCATTTTTTCCTCCTTTTCCAATCTCACGCTTTTGAAATCCATATACTTAGATAACAATAATCTGACCGGCCAAGTACCCCAAGGTTTGACTAAACTAACCCGACTCCACTACTTTGATATTTCTAATAACAATCTCAGTGGACCCTTACCAAAATTTAGTGCATCGAATGAAGTCACCACGTATGGCAATCCACTTCTAGAAACGACCTCAACTATACCACCAATTAGTAGTATGCCGCCGCAGATAAGCAGCATGGTGCCTACGGGAAACCGAGGAGATGATGGACAAATTAGTGGAAATGGAAATATAAAATTGATAATAGGTATTATTATTGGTGGTGTTTTACTTGTTGCATGCATTATTGGCTGCATAATTTTCTTCAAACGTTACCACCAGGGACTTCACCCTAGCCAGCTGAGCCAGAGCCAAGTTGAAAATATGGTGTTTTCCTTTGGATTATTGCAAAGAGTCACCAATAGCTTTGATGAGCAGTACATTTTAGGGCGAGGAGCATCTGGTGTTGTTTACAAAGGGGAACTCAAAAATGGAATGAAAGTTGCAGTTAATAAAATAAACTCGATAGCCATGGAAACCATGGGATACACAATAGTTATTTTACTTCTCTTGTGCATGCTCTAA

Coding sequence (CDS)

ATGGAAACCATTTTTTCCTCCTTTTCCAATCTCACGCTTTTGAAATCCATATACTTAGATAACAATAATCTGACCGGCCAAGTACCCCAAGGTTTGACTAAACTAACCCGACTCCACTACTTTGATATTTCTAATAACAATCTCAGTGGACCCTTACCAAAATTTAGTGCATCGAATGAAGTCACCACGTATGGCAATCCACTTCTAGAAACGACCTCAACTATACCACCAATTAGTAGTATGCCGCCGCAGATAAGCAGCATGGTGCCTACGGGAAACCGAGGAGATGATGGACAAATTAGTGGAAATGGAAATATAAAATTGATAATAGGTATTATTATTGGTGGTGTTTTACTTGTTGCATGCATTATTGGCTGCATAATTTTCTTCAAACGTTACCACCAGGGACTTCACCCTAGCCAGCTGAGCCAGAGCCAAGTTGAAAATATGGTGTTTTCCTTTGGATTATTGCAAAGAGTCACCAATAGCTTTGATGAGCAGTACATTTTAGGGCGAGGAGCATCTGGTGTTGTTTACAAAGGGGAACTCAAAAATGGAATGAAAGTTGCAGTTAATAAAATAAACTCGATAGCCATGGAAACCATGGGATACACAATAGTTATTTTACTTCTCTTGTGCATGCTCTAA

Protein sequence

METIFSSFSNLTLLKSIYLDNNNLTGQVPQGLTKLTRLHYFDISNNNLSGPLPKFSASNEVTTYGNPLLETTSTIPPISSMPPQISSMVPTGNRGDDGQISGNGNIKLIIGIIIGGVLLVACIIGCIIFFKRYHQGLHPSQLSQSQVENMVFSFGLLQRVTNSFDEQYILGRGASGVVYKGELKNGMKVAVNKINSIAMETMGYTIVILLLLCML

Homology

[Close]

BLAST of Lsi05G019390 vs. ExPASy Swiss-Prot
Match: Q9SIT1 (Receptor-like kinase TMK3 OS=Arabidopsis thaliana OX=3702 GN=TMK3 PE=1 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 1.3e-18
Identity = 73/250 (29.20%), Postives = 109/250 (43.60%), Query Frame = 0


Query: 3   TIFSSFSNLTLLKSIYLDNNNLTGQVPQGLTKLTRLHYFDISNNNLSGPLPKFSASNEVT 62
           TI  S + LT L++I L +N L+G +P  LT L++L   D+SNN+  G  PKF  +  + 
Sbjct: 379 TISPSLAKLTSLETINLADNKLSGHIPDELTTLSKLRLLDVSNNDFYGIPPKFRDTVTLV 438

Query: 63  TYGNPLLETTSTIPPISSMPPQISSMVPTGNRGDDGQISGNGNIKLIIGIIIGGVLLVAC 122
           T GN  +         S  P       P+G          + N+K+I+  ++GGV+   C
Sbjct: 439 TEGNANMGKNGP-NKTSDAPGASPGSKPSGGSDGSETSKKSSNVKIIVP-VVGGVVGALC 498

Query: 123 IIG---CIIFFKR--------------------------------------------YHQ 182
           ++G   C+   KR                                             H 
Sbjct: 499 LVGLGVCLYAKKRKRPARVQSPSSNMVIHPHHSGDNDDIKLTVAASSLNSGGGSDSYSHS 558

Query: 183 GLHPSQLSQSQVENMVFSFGLLQRVTNSFDEQYILGRGASGVVYKGELKNGMKVAVNKIN 206
           G   S +   +  N+V S  +L+ VTN+F E+ ILGRG  G VYKGEL +G K+AV ++ 
Sbjct: 559 GSAASDIHVVEAGNLVISIQVLRNVTNNFSEENILGRGGFGTVYKGELHDGTKIAVKRME 618

[Close]

BLAST of Lsi05G019390 vs. ExPASy Swiss-Prot
Match: Q9FYK0 (Receptor-like kinase TMK2 OS=Arabidopsis thaliana OX=3702 GN=TMK2 PE=1 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 1.7e-18
Identity = 75/233 (32.19%), Postives = 103/233 (44.21%), Query Frame = 0


Query: 3   TIFSSFSNLTLLKSIYLDNNNLTGQVPQGLTKLTRLHYFDISNNNLSGPLPKFSASNEVT 62
           TI   F++   L+ I L  NNL G +PQ L KL+ L   D+S N L G +P+F+ +  V 
Sbjct: 379 TISPRFADFASLRVINLSQNNLNGTIPQELAKLSNLKTLDVSKNRLCGEVPRFN-TTIVN 438

Query: 63  TYGNPLLETTSTIPPISSMPPQISSMVPTGNRGDDGQISGNGNIKLIIGIIIGGVLLVAC 122
           T GN                       P GN G       + N   I+G +I G+LL   
Sbjct: 439 TTGN-------------------FEDCPNGNAGK----KASSNAGKIVGSVI-GILLALL 498

Query: 123 IIGCIIFF----KRYHQGLHPSQLSQSQ----------------------------VENM 182
           +IG  IFF    K  +  +HP Q S  Q                              N+
Sbjct: 499 LIGVAIFFLVKKKMQYHKMHPQQQSSDQDAFKITIENLCTGVSESGFSGNDAHLGEAGNI 558

Query: 183 VFSFGLLQRVTNSFDEQYILGRGASGVVYKGELKNGMKVAVNKINSIAMETMG 204
           V S  +L+  T +FDE+ ILGRG  G+VYKGEL +G K+AV ++ S  +   G
Sbjct: 559 VISIQVLRDATYNFDEKNILGRGGFGIVYKGELHDGTKIAVKRMESSIISGKG 586

[Close]

BLAST of Lsi05G019390 vs. ExPASy Swiss-Prot
Match: Q9LK43 (Receptor-like kinase TMK4 OS=Arabidopsis thaliana OX=3702 GN=TMK4 PE=1 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 5.0e-18
Identity = 80/252 (31.75%), Postives = 118/252 (46.83%), Query Frame = 0


Query: 4   IFSSFSNLTLLKSIYLDNNNLTGQVPQGLTKLTRLHYFDISNNNLSGPLPKFSASNEVT- 63
           I  + +NLT LKS+YL+ N+LTG +P+ LT +T L   D+SNNNL G +PKF A+ + + 
Sbjct: 377 ISPAIANLTSLKSLYLNGNDLTGVIPKELTFMTSLQLIDVSNNNLRGEIPKFPATVKFSY 436

Query: 64  TYGNPLLETTSTIPPISSMPPQISSMVPTGNRGDDGQISGNGNIK--LIIGIIIGGVLLV 123
             GN LL T              SS    G  G  G  SG G  K  +I+G+I+  VL+ 
Sbjct: 437 KPGNALLGTNG---------GDGSSPGTGGASGGPGGSSGGGGSKVGVIVGVIV-AVLVF 496

Query: 124 ACIIGCIIF-------FKRYHQGLHPSQLSQSQVENMVFSFG------------------ 183
             I+G +++       + R+++   P ++ +  V + V + G                  
Sbjct: 497 LAILGFVVYKFVMKRKYGRFNR-TDPEKVGKILVSDAVSNGGSGNGGYANGHGANNFNAL 556

Query: 184 ------------------------LLQRVTNSFDEQYILGRGASGVVYKGELKNGMKVAV 204
                                   +L++VTN+F E  ILGRG  GVVY GEL +G K AV
Sbjct: 557 NSPSSGDNSDRFLLEGGSVTIPMEVLRQVTNNFSEDNILGRGGFGVVYAGELHDGTKTAV 616

[Close]

BLAST of Lsi05G019390 vs. ExPASy Swiss-Prot
Match: P43298 (Receptor protein kinase TMK1 OS=Arabidopsis thaliana OX=3702 GN=TMK1 PE=1 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 3.6e-16
Identity = 76/254 (29.92%), Postives = 113/254 (44.49%), Query Frame = 0


Query: 3   TIFSSFSNLTLLKSIYLDNNNLTGQVPQGLTKLTRLHYFDISNNNLSGPLPKFSASNEVT 62
           TI   F  +  L+ I L  NNLTG +PQ LT L  L   D+S+N L G +P F ++  V 
Sbjct: 377 TISPEFGAIKSLQRIILGINNLTGMIPQELTTLPNLKTLDVSSNKLFGKVPGFRSNVVVN 436

Query: 63  TYGNPLL--ETTSTIPPISSMPPQISSMVPTGNRGDDGQISGNGNIKLIIGIIIGGVLLV 122
           T GNP +  + +S   P SS P   S     G++   G  S    I +I+G ++GG+L +
Sbjct: 437 TNGNPDIGKDKSSLSSPGSSSPSGGSGSGINGDKDRRGMKSST-FIGIIVGSVLGGLLSI 496

Query: 123 ACIIGCIIFF------KRYHQG-------LHP---------------------------- 182
             +IG ++F       KR+          +HP                            
Sbjct: 497 -FLIGLLVFCWYKKRQKRFSGSESSNAVVVHPRHSGSDNESVKITVAGSSVSVGGISDTY 556

Query: 183 ---------SQLSQSQVENMVFSFGLLQRVTNSFDEQYILGRGASGVVYKGELKNGMKVA 205
                      +   +  NM+ S  +L+ VTN+F    ILG G  GVVYKGEL +G K+A
Sbjct: 557 TLPGTSEVGDNIQMVEAGNMLISIQVLRSVTNNFSSDNILGSGGFGVVYKGELHDGTKIA 616

[Close]

BLAST of Lsi05G019390 vs. ExPASy Swiss-Prot
Match: Q9LFS4 (Protein NSP-INTERACTING KINASE 1 OS=Arabidopsis thaliana OX=3702 GN=NIK1 PE=1 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 4.7e-16
Identity = 64/199 (32.16%), Postives = 105/199 (52.76%), Query Frame = 0


Query: 7   SFSNLTLLKSIYLDNNNLTGQVPQGLTKLTRLHYFDISNNNLSGPLPKFSASNEVTTYGN 66
           S   L  L+ + L+NN+L+G  P  L+ +T+L + D+S NNLSGP+P+F+A    +  GN
Sbjct: 148 SVGYLQSLQYLRLNNNSLSGVFPLSLSNMTQLAFLDLSYNNLSGPVPRFAAKT-FSIVGN 207

Query: 67  PLLETTSTIPPI--SSMPPQISSMVPTGNRGDDGQISGNGNIKLIIGIIIGGVLLVACII 126
           PL+  T T P    +++ P   ++  TG     G  S N  + + +G  +G V L+   +
Sbjct: 208 PLICPTGTEPDCNGTTLIPMSMNLNQTGVPLYAGG-SRNHKMAIAVGSSVGTVSLIFIAV 267

Query: 127 GCIIFFKRYH---------QGLHPSQLSQSQVENMVFSFGLLQRVTNSFDEQYILGRGAS 186
           G  +++++ H          G H  ++S   +    F F  LQ  TN+F  + +LG+G  
Sbjct: 268 GLFLWWRQRHNQNTFFDVKDGNHHEEVSLGNLRR--FGFRELQIATNNFSSKNLLGKGGY 327

Query: 187 GVVYKGELKNGMKVAVNKI 195
           G VYKG L +   VAV ++
Sbjct: 328 GNVYKGILGDSTVVAVKRL 342

[Close]

BLAST of Lsi05G019390 vs. ExPASy TrEMBL
Match: A0A2P6QW55 (Protein kinase domain-containing protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr4g0413671 PE=3 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 6.1e-27
Identity = 92/242 (38.02%), Postives = 127/242 (52.48%), Query Frame = 0


Query: 2   ETIFSSFSNLTLLKSIYLDNNNLTGQVPQGLTKLTRLHYFDISNNNLSGPLPKFSASNEV 61
           ETI  +F+NLT LK++ L NNNLTG +P  LT L +L  FD SNNNL G +PKF +  ++
Sbjct: 372 ETISPAFANLTSLKTLVLKNNNLTGPIPATLTTLPQLAVFDASNNNLYGDIPKFPSRVKL 431

Query: 62  TTYGNPLLETTSTIPPISSMPPQISSMVPTGNRGDDGQISGNGNIKLIIGIIIGGVLLVA 121
           TT GNPL+ TT +     S PP  +S  P G+       S NG+  +  G+I G V+ VA
Sbjct: 432 TTSGNPLIGTTPSSGGGGSAPPGNNSTAPGGSPSP----SSNGS-SVSPGMIAGIVIAVA 491

Query: 122 CIIGCIIF-------------FKRYHQGLHPSQLSQSQVE-------------------- 181
             IG ++F             F R    L+  ++++  V                     
Sbjct: 492 IFIGVLLFVFIKCYLSKRHRKFGRVDNTLNGIEIAKGNVTSCANGYNGVANELHSQSRGD 551

Query: 182 -------NMVFSFGLLQRVTNSFDEQYILGRGASGVVYKGELKNGMKVAVNKINSIAMET 204
                  N+  S  +L++VTN+F E  ILGRG  GVVYKGEL +G K+AV K+ S+A+ T
Sbjct: 552 LHVSVGGNVAISILVLRQVTNNFSEDNILGRGGFGVVYKGELHDGTKIAVKKMESVAVGT 608

[Close]

BLAST of Lsi05G019390 vs. ExPASy TrEMBL
Match: A0A7N2M8Q7 (Protein kinase domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 6.1e-27
Identity = 80/207 (38.65%), Postives = 116/207 (56.04%), Query Frame = 0


Query: 3   TIFSSFSNLTLLKSIYLDNNNLTGQVPQGLTKLTRLHYFDISNNNLSGPLPKFSASNEVT 62
           TI  +F+ LT L++++LD+N LTG +P  LT +TRL   D+SNNNLSG +PKF  S  +T
Sbjct: 282 TISPAFAKLTSLRNLFLDDNKLTGSIPDALTNITRLQVLDVSNNNLSGLIPKFGDSVNLT 341

Query: 63  TYGNPLLETTSTIPPISSMPPQISSMVPTGNRGDDGQISGNGNIKLIIGIIIGGVLLVAC 122
           T GNPL+ T  T               P+GN+   G    +    +I GI+I  ++ V  
Sbjct: 342 TTGNPLIGTNGT--------------SPSGNKAGTGSSGASVLPGMIAGIVIAVIIFVVV 401

Query: 123 I----IGCIIFFKRYHQG--LHPSQLSQSQVENMVFSFGLLQRVTNSFDEQYILGRGASG 182
           +    I C +  +    G  ++P     + V N+  S  +L++VTN+F+E  ILGRG  G
Sbjct: 402 VLFISIKCYVSSRHRKFGGVVNPENGGTTSVPNIEISIEVLKQVTNNFNEDNILGRGGFG 461

Query: 183 VVYKGELKNGMKVAVNKINSIAMETMG 204
           VVYKGE  +G KVAV ++ S A  + G
Sbjct: 462 VVYKGEYYDGTKVAVKRMESAARGSKG 474

[Close]

BLAST of Lsi05G019390 vs. ExPASy TrEMBL
Match: A0A2P6QVZ9 (Protein kinase domain-containing protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr4g0412891 PE=3 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 4.0e-26
Identity = 90/241 (37.34%), Postives = 126/241 (52.28%), Query Frame = 0


Query: 3   TIFSSFSNLTLLKSIYLDNNNLTGQVPQGLTKLTRLHYFDISNNNLSGPLPKFSASNEVT 62
           TI  +F+NLT LK++ L NNNLTG +P  LT L +L  FD SNNNL G +PKF +  ++T
Sbjct: 373 TISPAFANLTSLKTLVLKNNNLTGPIPATLTTLPQLAVFDASNNNLYGDIPKFPSRVKLT 432

Query: 63  TYGNPLLETTSTIPPISSMPPQISSMVPTGNRGDDGQISGNGNIKLIIGIIIGGVLLVAC 122
           T GNPL+ TT +     S PP  +S  P G+       S NG+  +  G+I G V+ VA 
Sbjct: 433 TSGNPLIGTTPSSGGGGSAPPGNNSTAPGGSPSP----SSNGS-SVSPGMIAGIVIAVAI 492

Query: 123 IIGCIIF-------------FKRYHQGLHPSQLSQSQVE--------------------- 182
            IG ++F             F R    L+  ++++S                        
Sbjct: 493 FIGVLLFVFIKCYLSKRHRKFGRVDNTLNGIEIAKSDATSCANGYNGVASELHSQSSGDL 552

Query: 183 ------NMVFSFGLLQRVTNSFDEQYILGRGASGVVYKGELKNGMKVAVNKINSIAMETM 204
                 N+  S  +L++VTN+F E  ILGRG  GVVYKGEL +G K+AV ++ S+A+ T 
Sbjct: 553 HVFEGGNVAISIQVLRQVTNNFSEDNILGRGGFGVVYKGELHDGTKIAVKRMESVAVGTK 608

[Close]

BLAST of Lsi05G019390 vs. ExPASy TrEMBL
Match: A0A6P5RR14 (receptor-like kinase TMK4 OS=Prunus avium OX=42229 GN=LOC110748598 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 6.8e-26
Identity = 82/216 (37.96%), Postives = 119/216 (55.09%), Query Frame = 0


Query: 7   SFSNLTLLKSIYLDNNNLTGQVPQGLTKLTRLHYFDISNNNLSGPLPKFSASNEVTTYGN 66
           +F+NLT LK++ L NNNLTG +P  L  LT+L   D+SNNNLSG +P+F  + ++ T GN
Sbjct: 2   AFANLTSLKNLVLKNNNLTGSIPANLLTLTQLQLLDVSNNNLSGEIPQFPYTVKLITTGN 61

Query: 67  PLLETTSTIPPISSMPPQISSMVPTGNRGDDGQISGNGNIK--LIIGIIIGGVLLVACII 126
            L+ TT +       PP  S    T   G+    SG  ++   +I GI+ G V+ +A ++
Sbjct: 62  VLIGTTPSSGG-GGGPPSGSGSNGTTPNGNPAPASGGSSVSPGMIAGIVSGIVIFIAVLL 121

Query: 127 GCIIFFKRYHQGLH--------------PSQ---LSQSQVENMVFSFGLLQRVTNSFDEQ 186
              +F K Y    H              PS    L  S+  N+  S  +L++VTN+F E 
Sbjct: 122 FVFVFIKCYGNKKHVVRIVASENGCNGVPSDKTGLHLSESGNVAISIEVLRKVTNNFSED 181

Query: 187 YILGRGASGVVYKGELKNGMKVAVNKINSIAMETMG 204
            ILGRG  GVVYKGEL +G ++AV ++  +A+ T G
Sbjct: 182 NILGRGGFGVVYKGELHDGTRIAVKRMECVAVSTEG 216

[Close]

BLAST of Lsi05G019390 vs. ExPASy TrEMBL
Match: A0A6P5SM38 (receptor-like kinase TMK4 OS=Prunus avium OX=42229 GN=LOC110759427 PE=3 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 6.8e-26
Identity = 83/219 (37.90%), Postives = 120/219 (54.79%), Query Frame = 0


Query: 4   IFSSFSNLTLLKSIYLDNNNLTGQVPQGLTKLTRLHYFDISNNNLSGPLPKFSASNEVTT 63
           I  +F+NLT LK++ L NNNLTG +P  L  LT+L   D+SNNNLSG +P+F  + ++ T
Sbjct: 429 ISPAFANLTSLKNLVLKNNNLTGSIPANLLTLTQLQLLDVSNNNLSGEIPQFPYTVKLIT 488

Query: 64  YGNPLLETTSTIPPISSMPPQISSMVPTGNRGDDGQISGNGNIK--LIIGIIIGGVLLVA 123
            GN L+ TT +       PP  S    T   G+    SG  ++   +I GI+ G V+ +A
Sbjct: 489 TGNVLIGTTPSSGG-GGGPPSGSGSNGTTPNGNPAPASGGSSVSPGMIAGIVSGIVIFIA 548

Query: 124 CIIGCIIFFKRYHQGLH--------------PSQ---LSQSQVENMVFSFGLLQRVTNSF 183
            ++   +F K Y    H              PS    L  S+  N+  S  +L++VTN+F
Sbjct: 549 VLLFVFVFIKCYGNKKHVVRIVASENGCNGVPSDKTGLHLSESGNVAISIEVLRKVTNNF 608

Query: 184 DEQYILGRGASGVVYKGELKNGMKVAVNKINSIAMETMG 204
            E  ILGRG  GVVYKGEL +G ++AV ++  +A+ T G
Sbjct: 609 SEDNILGRGGFGVVYKGELHDGTRIAVKRMECVAVSTEG 646

[Close]

BLAST of Lsi05G019390 vs. NCBI nr
Match: XP_024197188.1 (receptor-like kinase TMK4 [Rosa chinensis] >PRQ38417.1 putative protein kinase RLK-Pelle-LRR-IX family [Rosa chinensis])

HSP 1 Score: 131.0 bits (328), Expect = 1.3e-26
Identity = 92/242 (38.02%), Postives = 127/242 (52.48%), Query Frame = 0


Query: 2   ETIFSSFSNLTLLKSIYLDNNNLTGQVPQGLTKLTRLHYFDISNNNLSGPLPKFSASNEV 61
           ETI  +F+NLT LK++ L NNNLTG +P  LT L +L  FD SNNNL G +PKF +  ++
Sbjct: 372 ETISPAFANLTSLKTLVLKNNNLTGPIPATLTTLPQLAVFDASNNNLYGDIPKFPSRVKL 431

Query: 62  TTYGNPLLETTSTIPPISSMPPQISSMVPTGNRGDDGQISGNGNIKLIIGIIIGGVLLVA 121
           TT GNPL+ TT +     S PP  +S  P G+       S NG+  +  G+I G V+ VA
Sbjct: 432 TTSGNPLIGTTPSSGGGGSAPPGNNSTAPGGSPSP----SSNGS-SVSPGMIAGIVIAVA 491

Query: 122 CIIGCIIF-------------FKRYHQGLHPSQLSQSQVE-------------------- 181
             IG ++F             F R    L+  ++++  V                     
Sbjct: 492 IFIGVLLFVFIKCYLSKRHRKFGRVDNTLNGIEIAKGNVTSCANGYNGVANELHSQSRGD 551

Query: 182 -------NMVFSFGLLQRVTNSFDEQYILGRGASGVVYKGELKNGMKVAVNKINSIAMET 204
                  N+  S  +L++VTN+F E  ILGRG  GVVYKGEL +G K+AV K+ S+A+ T
Sbjct: 552 LHVSVGGNVAISILVLRQVTNNFSEDNILGRGGFGVVYKGELHDGTKIAVKKMESVAVGT 608

[Close]

BLAST of Lsi05G019390 vs. NCBI nr
Match: XP_023918662.1 (receptor-like kinase TMK4 [Quercus suber])

HSP 1 Score: 129.8 bits (325), Expect = 2.8e-26
Identity = 81/203 (39.90%), Postives = 116/203 (57.14%), Query Frame = 0


Query: 3   TIFSSFSNLTLLKSIYLDNNNLTGQVPQGLTKLTRLHYFDISNNNLSGPLPKFSASNEVT 62
           TI ++F+ LT L ++YL +NNLTG +P  LT +T L   D+SNNNL+G +PKF  S  +T
Sbjct: 372 TISAAFAKLTWLMNLYLGDNNLTGSIPDALTNMTSLKVLDVSNNNLTGLIPKFGDSVNLT 431

Query: 63  TYGNPLLETTSTIPPISSMPPQISSMVPTGNRGDDGQISGNGNIK-LIIGIIIGGVLLVA 122
           T GNPL+    T+P  +           T   G  G     G I  ++I +II  V+++ 
Sbjct: 432 TTGNPLIGKNGTLPSRN-----------TAGTGSSGTSVSPGIIAGIVIAVIILSVVVLF 491

Query: 123 CIIGCIIFFK-RYHQGLHPSQLSQSQVENMVFSFGLLQRVTNSFDEQYILGRGASGVVYK 182
             I C I  K R  +G+   +   + V N+  S  +L++VTN+F+E  ILGRG SGVVYK
Sbjct: 492 VSIKCYISSKHRKFKGVESPENGGTSVLNIEISIEVLEQVTNNFNEDNILGRGGSGVVYK 551

Query: 183 GELKNGMKVAVNKINSIAMETMG 204
           GE  +G  +AV ++ S AM   G
Sbjct: 552 GENHDGTMIAVKRMESTAMSRKG 563

[Close]

BLAST of Lsi05G019390 vs. NCBI nr
Match: XP_023515151.1 (receptor-like kinase TMK4 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 129.4 bits (324), Expect = 3.7e-26
Identity = 87/238 (36.55%), Postives = 128/238 (53.78%), Query Frame = 0


Query: 4   IFSSFSNLTLLKSIYLDNNNLTGQVPQGLTKLTRLHYFDISNNNLSGPLPKFSASNEVTT 63
           I  +F+NLT LK++YL++NNLTG++P  LT L +L   D+SNNNLSG +PKF+AS ++ T
Sbjct: 377 ISPAFANLTSLKNLYLNDNNLTGEIPASLTTLAQLQTLDVSNNNLSGQIPKFAASVKLNT 436

Query: 64  YGNPLLETTSTIPPISSMPPQISSMVPTGNRGDDGQISGNG-NIKLIIGIIIGGVLLVAC 123
            GNPL+ T+ T  P      +I S   T +    G  +G+  +  +I+G++I G++ +A 
Sbjct: 437 KGNPLIGTSLT--PGGHDGGKIDSNGTTVDNPSSGSSNGSSVSAGVIVGVVIAGLVFIAV 496

Query: 124 IIGCIIFFKRYHQGLH-------------------------PSQLSQSQVE--------- 183
           ++   + FK Y    H                         PS+L     E         
Sbjct: 497 LL--FVVFKCYVSNRHKMFEKVNNPENGKEIVNGLNGYAGVPSELQSQSSEDFSNNIHSF 556

Query: 184 ---NMVFSFGLLQRVTNSFDEQYILGRGASGVVYKGELKNGMKVAVNKINSIAMETMG 204
              N+  S  LL++VTN+F E  +LGRG  GVVYKGEL +G  +AV ++ S AM T G
Sbjct: 557 DGGNVAISIHLLRQVTNNFSEDNVLGRGGFGVVYKGELHDGTIIAVKRMESGAMGTKG 610

[Close]

BLAST of Lsi05G019390 vs. NCBI nr
Match: XP_024193530.1 (receptor-like kinase TMK4 [Rosa chinensis] >PRQ38350.1 putative protein kinase RLK-Pelle-LRR-IX family [Rosa chinensis])

HSP 1 Score: 128.3 bits (321), Expect = 8.2e-26
Identity = 90/241 (37.34%), Postives = 126/241 (52.28%), Query Frame = 0


Query: 3   TIFSSFSNLTLLKSIYLDNNNLTGQVPQGLTKLTRLHYFDISNNNLSGPLPKFSASNEVT 62
           TI  +F+NLT LK++ L NNNLTG +P  LT L +L  FD SNNNL G +PKF +  ++T
Sbjct: 373 TISPAFANLTSLKTLVLKNNNLTGPIPATLTTLPQLAVFDASNNNLYGDIPKFPSRVKLT 432

Query: 63  TYGNPLLETTSTIPPISSMPPQISSMVPTGNRGDDGQISGNGNIKLIIGIIIGGVLLVAC 122
           T GNPL+ TT +     S PP  +S  P G+       S NG+  +  G+I G V+ VA 
Sbjct: 433 TSGNPLIGTTPSSGGGGSAPPGNNSTAPGGSPSP----SSNGS-SVSPGMIAGIVIAVAI 492

Query: 123 IIGCIIF-------------FKRYHQGLHPSQLSQSQVE--------------------- 182
            IG ++F             F R    L+  ++++S                        
Sbjct: 493 FIGVLLFVFIKCYLSKRHRKFGRVDNTLNGIEIAKSDATSCANGYNGVASELHSQSSGDL 552

Query: 183 ------NMVFSFGLLQRVTNSFDEQYILGRGASGVVYKGELKNGMKVAVNKINSIAMETM 204
                 N+  S  +L++VTN+F E  ILGRG  GVVYKGEL +G K+AV ++ S+A+ T 
Sbjct: 553 HVFEGGNVAISIQVLRQVTNNFSEDNILGRGGFGVVYKGELHDGTKIAVKRMESVAVGTK 608

[Close]

BLAST of Lsi05G019390 vs. NCBI nr
Match: XP_021804253.1 (receptor-like kinase TMK4, partial [Prunus avium])

HSP 1 Score: 127.5 bits (319), Expect = 1.4e-25
Identity = 82/216 (37.96%), Postives = 119/216 (55.09%), Query Frame = 0


Query: 7   SFSNLTLLKSIYLDNNNLTGQVPQGLTKLTRLHYFDISNNNLSGPLPKFSASNEVTTYGN 66
           +F+NLT LK++ L NNNLTG +P  L  LT+L   D+SNNNLSG +P+F  + ++ T GN
Sbjct: 2   AFANLTSLKNLVLKNNNLTGSIPANLLTLTQLQLLDVSNNNLSGEIPQFPYTVKLITTGN 61

Query: 67  PLLETTSTIPPISSMPPQISSMVPTGNRGDDGQISGNGNIK--LIIGIIIGGVLLVACII 126
            L+ TT +       PP  S    T   G+    SG  ++   +I GI+ G V+ +A ++
Sbjct: 62  VLIGTTPSSGG-GGGPPSGSGSNGTTPNGNPAPASGGSSVSPGMIAGIVSGIVIFIAVLL 121

Query: 127 GCIIFFKRYHQGLH--------------PSQ---LSQSQVENMVFSFGLLQRVTNSFDEQ 186
              +F K Y    H              PS    L  S+  N+  S  +L++VTN+F E 
Sbjct: 122 FVFVFIKCYGNKKHVVRIVASENGCNGVPSDKTGLHLSESGNVAISIEVLRKVTNNFSED 181

Query: 187 YILGRGASGVVYKGELKNGMKVAVNKINSIAMETMG 204
            ILGRG  GVVYKGEL +G ++AV ++  +A+ T G
Sbjct: 182 NILGRGGFGVVYKGELHDGTRIAVKRMECVAVSTEG 216

[Close]

BLAST of Lsi05G019390 vs. TAIR 10
Match: AT2G01820.1 (Leucine-rich repeat protein kinase family protein )

HSP 1 Score: 94.7 bits (234), Expect = 9.4e-20
Identity = 73/250 (29.20%), Postives = 109/250 (43.60%), Query Frame = 0


Query: 3   TIFSSFSNLTLLKSIYLDNNNLTGQVPQGLTKLTRLHYFDISNNNLSGPLPKFSASNEVT 62
           TI  S + LT L++I L +N L+G +P  LT L++L   D+SNN+  G  PKF  +  + 
Sbjct: 379 TISPSLAKLTSLETINLADNKLSGHIPDELTTLSKLRLLDVSNNDFYGIPPKFRDTVTLV 438

Query: 63  TYGNPLLETTSTIPPISSMPPQISSMVPTGNRGDDGQISGNGNIKLIIGIIIGGVLLVAC 122
           T GN  +         S  P       P+G          + N+K+I+  ++GGV+   C
Sbjct: 439 TEGNANMGKNGP-NKTSDAPGASPGSKPSGGSDGSETSKKSSNVKIIVP-VVGGVVGALC 498

Query: 123 IIG---CIIFFKR--------------------------------------------YHQ 182
           ++G   C+   KR                                             H 
Sbjct: 499 LVGLGVCLYAKKRKRPARVQSPSSNMVIHPHHSGDNDDIKLTVAASSLNSGGGSDSYSHS 558

Query: 183 GLHPSQLSQSQVENMVFSFGLLQRVTNSFDEQYILGRGASGVVYKGELKNGMKVAVNKIN 206
           G   S +   +  N+V S  +L+ VTN+F E+ ILGRG  G VYKGEL +G K+AV ++ 
Sbjct: 559 GSAASDIHVVEAGNLVISIQVLRNVTNNFSEENILGRGGFGTVYKGELHDGTKIAVKRME 618

[Close]

BLAST of Lsi05G019390 vs. TAIR 10
Match: AT1G24650.1 (Leucine-rich repeat protein kinase family protein )

HSP 1 Score: 94.4 bits (233), Expect = 1.2e-19
Identity = 75/233 (32.19%), Postives = 103/233 (44.21%), Query Frame = 0


Query: 3   TIFSSFSNLTLLKSIYLDNNNLTGQVPQGLTKLTRLHYFDISNNNLSGPLPKFSASNEVT 62
           TI   F++   L+ I L  NNL G +PQ L KL+ L   D+S N L G +P+F+ +  V 
Sbjct: 379 TISPRFADFASLRVINLSQNNLNGTIPQELAKLSNLKTLDVSKNRLCGEVPRFN-TTIVN 438

Query: 63  TYGNPLLETTSTIPPISSMPPQISSMVPTGNRGDDGQISGNGNIKLIIGIIIGGVLLVAC 122
           T GN                       P GN G       + N   I+G +I G+LL   
Sbjct: 439 TTGN-------------------FEDCPNGNAGK----KASSNAGKIVGSVI-GILLALL 498

Query: 123 IIGCIIFF----KRYHQGLHPSQLSQSQ----------------------------VENM 182
           +IG  IFF    K  +  +HP Q S  Q                              N+
Sbjct: 499 LIGVAIFFLVKKKMQYHKMHPQQQSSDQDAFKITIENLCTGVSESGFSGNDAHLGEAGNI 558

Query: 183 VFSFGLLQRVTNSFDEQYILGRGASGVVYKGELKNGMKVAVNKINSIAMETMG 204
           V S  +L+  T +FDE+ ILGRG  G+VYKGEL +G K+AV ++ S  +   G
Sbjct: 559 VISIQVLRDATYNFDEKNILGRGGFGIVYKGELHDGTKIAVKRMESSIISGKG 586

[Close]

BLAST of Lsi05G019390 vs. TAIR 10
Match: AT3G23750.1 (Leucine-rich repeat protein kinase family protein )

HSP 1 Score: 92.8 bits (229), Expect = 3.6e-19
Identity = 80/252 (31.75%), Postives = 118/252 (46.83%), Query Frame = 0


Query: 4   IFSSFSNLTLLKSIYLDNNNLTGQVPQGLTKLTRLHYFDISNNNLSGPLPKFSASNEVT- 63
           I  + +NLT LKS+YL+ N+LTG +P+ LT +T L   D+SNNNL G +PKF A+ + + 
Sbjct: 377 ISPAIANLTSLKSLYLNGNDLTGVIPKELTFMTSLQLIDVSNNNLRGEIPKFPATVKFSY 436

Query: 64  TYGNPLLETTSTIPPISSMPPQISSMVPTGNRGDDGQISGNGNIK--LIIGIIIGGVLLV 123
             GN LL T              SS    G  G  G  SG G  K  +I+G+I+  VL+ 
Sbjct: 437 KPGNALLGTNG---------GDGSSPGTGGASGGPGGSSGGGGSKVGVIVGVIV-AVLVF 496

Query: 124 ACIIGCIIF-------FKRYHQGLHPSQLSQSQVENMVFSFG------------------ 183
             I+G +++       + R+++   P ++ +  V + V + G                  
Sbjct: 497 LAILGFVVYKFVMKRKYGRFNR-TDPEKVGKILVSDAVSNGGSGNGGYANGHGANNFNAL 556

Query: 184 ------------------------LLQRVTNSFDEQYILGRGASGVVYKGELKNGMKVAV 204
                                   +L++VTN+F E  ILGRG  GVVY GEL +G K AV
Sbjct: 557 NSPSSGDNSDRFLLEGGSVTIPMEVLRQVTNNFSEDNILGRGGFGVVYAGELHDGTKTAV 616

[Close]

BLAST of Lsi05G019390 vs. TAIR 10
Match: AT1G66150.1 (transmembrane kinase 1 )

HSP 1 Score: 86.7 bits (213), Expect = 2.6e-17
Identity = 76/254 (29.92%), Postives = 113/254 (44.49%), Query Frame = 0


Query: 3   TIFSSFSNLTLLKSIYLDNNNLTGQVPQGLTKLTRLHYFDISNNNLSGPLPKFSASNEVT 62
           TI   F  +  L+ I L  NNLTG +PQ LT L  L   D+S+N L G +P F ++  V 
Sbjct: 377 TISPEFGAIKSLQRIILGINNLTGMIPQELTTLPNLKTLDVSSNKLFGKVPGFRSNVVVN 436

Query: 63  TYGNPLL--ETTSTIPPISSMPPQISSMVPTGNRGDDGQISGNGNIKLIIGIIIGGVLLV 122
           T GNP +  + +S   P SS P   S     G++   G  S    I +I+G ++GG+L +
Sbjct: 437 TNGNPDIGKDKSSLSSPGSSSPSGGSGSGINGDKDRRGMKSST-FIGIIVGSVLGGLLSI 496

Query: 123 ACIIGCIIFF------KRYHQG-------LHP---------------------------- 182
             +IG ++F       KR+          +HP                            
Sbjct: 497 -FLIGLLVFCWYKKRQKRFSGSESSNAVVVHPRHSGSDNESVKITVAGSSVSVGGISDTY 556

Query: 183 ---------SQLSQSQVENMVFSFGLLQRVTNSFDEQYILGRGASGVVYKGELKNGMKVA 205
                      +   +  NM+ S  +L+ VTN+F    ILG G  GVVYKGEL +G K+A
Sbjct: 557 TLPGTSEVGDNIQMVEAGNMLISIQVLRSVTNNFSSDNILGSGGFGVVYKGELHDGTKIA 616

[Close]

BLAST of Lsi05G019390 vs. TAIR 10
Match: AT5G16000.1 (NSP-interacting kinase 1 )

HSP 1 Score: 86.3 bits (212), Expect = 3.3e-17
Identity = 64/199 (32.16%), Postives = 105/199 (52.76%), Query Frame = 0


Query: 7   SFSNLTLLKSIYLDNNNLTGQVPQGLTKLTRLHYFDISNNNLSGPLPKFSASNEVTTYGN 66
           S   L  L+ + L+NN+L+G  P  L+ +T+L + D+S NNLSGP+P+F+A    +  GN
Sbjct: 148 SVGYLQSLQYLRLNNNSLSGVFPLSLSNMTQLAFLDLSYNNLSGPVPRFAAKT-FSIVGN 207

Query: 67  PLLETTSTIPPI--SSMPPQISSMVPTGNRGDDGQISGNGNIKLIIGIIIGGVLLVACII 126
           PL+  T T P    +++ P   ++  TG     G  S N  + + +G  +G V L+   +
Sbjct: 208 PLICPTGTEPDCNGTTLIPMSMNLNQTGVPLYAGG-SRNHKMAIAVGSSVGTVSLIFIAV 267

Query: 127 GCIIFFKRYH---------QGLHPSQLSQSQVENMVFSFGLLQRVTNSFDEQYILGRGAS 186
           G  +++++ H          G H  ++S   +    F F  LQ  TN+F  + +LG+G  
Sbjct: 268 GLFLWWRQRHNQNTFFDVKDGNHHEEVSLGNLRR--FGFRELQIATNNFSSKNLLGKGGY 327

Query: 187 GVVYKGELKNGMKVAVNKI 195
           G VYKG L +   VAV ++
Sbjct: 328 GNVYKGILGDSTVVAVKRL 342

The following BLAST results are available for this feature:

BLAST of Lsi05G019390 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SIT1	1.3e-18	29.20	Receptor-like kinase TMK3 OS=Arabidopsis thaliana OX=3702 GN=TMK3 PE=1 SV=1	[more]
Q9FYK0	1.7e-18	32.19	Receptor-like kinase TMK2 OS=Arabidopsis thaliana OX=3702 GN=TMK2 PE=1 SV=1	[more]
Q9LK43	5.0e-18	31.75	Receptor-like kinase TMK4 OS=Arabidopsis thaliana OX=3702 GN=TMK4 PE=1 SV=1	[more]
P43298	3.6e-16	29.92	Receptor protein kinase TMK1 OS=Arabidopsis thaliana OX=3702 GN=TMK1 PE=1 SV=1	[more]
Q9LFS4	4.7e-16	32.16	Protein NSP-INTERACTING KINASE 1 OS=Arabidopsis thaliana OX=3702 GN=NIK1 PE=1 SV...	[more]

BLAST of Lsi05G019390 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2P6QW55	6.1e-27	38.02	Protein kinase domain-containing protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_...	[more]
A0A7N2M8Q7	6.1e-27	38.65	Protein kinase domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]
A0A2P6QVZ9	4.0e-26	37.34	Protein kinase domain-containing protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_...	[more]
A0A6P5RR14	6.8e-26	37.96	receptor-like kinase TMK4 OS=Prunus avium OX=42229 GN=LOC110748598 PE=4 SV=1	[more]
A0A6P5SM38	6.8e-26	37.90	receptor-like kinase TMK4 OS=Prunus avium OX=42229 GN=LOC110759427 PE=3 SV=1	[more]

BLAST of Lsi05G019390 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_024197188.1	1.3e-26	38.02	receptor-like kinase TMK4 [Rosa chinensis] >PRQ38417.1 putative protein kinase R...	[more]
XP_023918662.1	2.8e-26	39.90	receptor-like kinase TMK4 [Quercus suber]	[more]
XP_023515151.1	3.7e-26	36.55	receptor-like kinase TMK4 [Cucurbita pepo subsp. pepo]	[more]
XP_024193530.1	8.2e-26	37.34	receptor-like kinase TMK4 [Rosa chinensis] >PRQ38350.1 putative protein kinase R...	[more]
XP_021804253.1	1.4e-25	37.96	receptor-like kinase TMK4, partial [Prunus avium]	[more]

BLAST of Lsi05G019390 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G01820.1	9.4e-20	29.20	Leucine-rich repeat protein kinase family protein	[more]
AT1G24650.1	1.2e-19	32.19	Leucine-rich repeat protein kinase family protein	[more]
AT3G23750.1	3.6e-19	31.75	Leucine-rich repeat protein kinase family protein	[more]
AT1G66150.1	2.6e-17	29.92	transmembrane kinase 1	[more]
AT5G16000.1	3.3e-17	32.16	NSP-interacting kinase 1	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.30.200.20	Phosphorylase Kinase; domain 1	coord: 128..206 e-value: 8.8E-12 score: 46.7
None	No IPR available	PANTHER	PTHR47986:SF10	RECEPTOR-LIKE KINASE TMK4	coord: 3..204
None	No IPR available	PANTHER	PTHR47986	OSJNBA0070M12.3 PROTEIN	coord: 3..204
None	No IPR available	SUPERFAMILY	52058	L domain-like	coord: 4..55
IPR032675	Leucine-rich repeat domain superfamily	GENE3D	3.80.10.10	Ribonuclease Inhibitor	coord: 1..72 e-value: 1.0E-14 score: 56.5
IPR011009	Protein kinase-like domain superfamily	SUPERFAMILY	56112	Protein kinase-like (PK-like)	coord: 140..195

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi05G019390.1	Lsi05G019390.1	mRNA