Lsi05G018890 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi05G018890
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	ATP synthase subunit delta', mitochondrial
Location	chr05: 26046406 .. 26049209 (-)
RNA-Seq Expression	Lsi05G018890
Synteny	Lsi05G018890

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCCTTATCTATGAGGCTCAGATCCACAGTAGTTTCGGCAAATCCTCCATTTTCTCAGCTTCCAAACAGCGCCAGCGGAACCCTTCCACTTCTCCTTCTCCTTCTTCATCTCTCTCCGACCTTGCGAGAGCCGAGCGACCCCCTTTCTCTCTCCGCCATGTTCCGACGAGCTTCCAGCCTTTTGGCCCGCCCTTTTCTCTCTGCAAGGACAAGATCCTTCTCCACCGATCTGCCGGCCGCCTCTTCCACCGACGATGCCTTTGTCTCCGCCTGGAAGAAGGTGATCCCCAATATTGACCCTCCTAAAACTCCTCTATCTTTCATGGCTCCTCGTCCTGCTACGCCTTCTTCCATCCCTTCTAAGCTCACTGTCAACTTCGTCCTTCCCTATGCCTCCGAACTCTCTGCCAAAGAGGTGCGTCTTCTAATTTTGTTTTGCTGCTGATTTTGTGTATGTCAGATGTTGAATCTTGTGTGTGATTATGAATTTTTTCTGCGTTTGATTTGATTTGATCTTCTGTGAATTTTTCATTTTCGTGTTTTTATTTGTTATTGGATTAATTCCTAGTACCAATATTGATGTAAAACTATGAGGCATCCATTTCTATGAATCAAATGTTTGGGGGAAATGATCGACGTAAACTTAACATTTCGATTCCGTGGTAACAAATGCTGAACTAGAAATGAATTTTATCGGACTGAGGTCGTTTATTTTATTATTTACACTCGATATGAGAGATGAATTTCTGTACATAATCAGTGCGGGTCATAGATTTAATTTTCTTGTTTTCGTTTTGAATTTGCTATTTGGCATTCATTTCCTCATACTGATCCGATCACACTGGGGGATGTTTGGCGTTCTCTTTTCATATTCATAGACATAGTGATGCGAAGATCAGATCATACGAATACTGTAAATGTCATGTTCTTCCCTCATGGTCAAGGACCCTCTAAGTATTGTTGATATGCAGTGCTGAGAAATGCTTAATCTGCTTATCTAGTATCGTAGGTCTGGTTTCCAATGCTGTCATATCAGTAATATTAAGAATTAGACCAAGCTCTGCTGATAAATTATGGTGGCGTTTTCAGGCTTCATTCATGTTATCATCAATTCTTTGTGAAGTTTAATTTTTGTTTCGCGGTTCCCCGCATCCTGAATCCTATTCCACAACCGTCCACGTTTCCCAGTTGCTGTTGTTTTCTAAATCCCATGCCAGGTATTTGGTGCTTAGTTTAATGGGGAAATATCTACACATTCTATTATCTTCATTAAAAATCCAAAAGAGGCTACTAGTGATAAGAACCCTGTTCATTAATGCCTTCTTTTTCCCGTTTCTCGGTTATAAACATTTTAGTAGCAAAAGAACGTGTACAAAAGAAATGACGATCAAAGGGATACCAAGTATAAAAGAGATTGGAGACCTCCAATTAGTTTGGATAACTAAGGGAAGGGAGAATTACTACAAAAGAATTTAGTGGCAAAATTCCATCTAGAAGCTAGAAACAAAGTCTCACCAGCTATTCCCTTCTTAAAAGATTATTTGGTTTTTACCATCCCCCAACCCATTAAGTAGTGAGTGCTACATTTAAATAGATATGAGGTGGTAAAAAAGAAAAGTATGTTGTCTCTAAACTTCGGCTGCCAGAACTCAGAAGTTACTCAAAGTTTATTGTGAACATGTCTGCATCAATTGGTCATATTCTTCATTTCCCTTCTCTATCTGATGAGAGGCTAAAATTTTTCTCAAATTCAACTTCGTTTTTCTATTAACTGCTAGAAAGACATAGTTGTAGACTCTAATGGGTCAAAGGTTATACACCTGCGAGATTTATCTCAGACATGCTATGATTAAAGATGCGAATTGCAATGGAACCCAAATTTTGCGGTCAGATTTTTTATTGCTCTTCCTTCAAGATTTTCTTTTCCCACCATTATGAACAGGTTGACATGGTCATAATTCCAGCAACAACTGGGCAAATGGGTGTTCTTCCTGGTCATGTAGCAACAATCGCAGAGTTGAAGCCAGGGGTTTTATCAGTACACGAAGGGACTGACATCAAAAAATACTTCGTGAGCAGTGGTTTTGCATTCATCCATGGCAACTCGTATGCTGACATAATCGCTGTCGAAGCTGTGCCTGTAGATCAAATCGATGCCAGCCAAGTACAGAAGGGTCTTGCCGAATTCACCCAAAAGTTGAACTCTGCCTCGACAGACTTGGAGAAAGCCGAAGCCCAAATTGGAGTCGACGTGCACAGTGCCCTGAATTCTGCCCTTACAGGATAGTTTCCTCGGCTCTCAAATTGGCCACCCTTCTGTTTATCTATTTCCAATTGTATGTTCCTTCATAACACTGCCTCATTGACAGTTTGAATTGTCTTCTTTGGTGGAAATACCCTCTGGAACATCATCTTGGGGCTTACCTTTCTTGTGTTGAATTTGAAGTCATTCACAAATAAATATATTAGGATGGTTTTTTGCTTGGCCTCGTAGCTGGTCATAATCTGTTGCCACCAAACCTCACAAACAAGGGAAATTTTTCATTTGAATCTGTATGAATGATTCAAATCATGTCTCATTTGAGAACAATTTTCAAAGGTAAGAATATTCTGAATCTATTTGTATTCCTCTTTTTTCTTTGGTAAAGGTTGAAGGCCATGCATCTTTAGTATTGTGATTGATCTTCCTATTGGTGAATTTGTAGGCTATTAATTTAGATGGTAATCTTTTTTTAAAAAAAAAGCTCTTTTTAATGATTTGTACATCAATTATGTAAATAACCAAATATGATATGGAGCATTGTT

mRNA sequence

GCCTTATCTATGAGGCTCAGATCCACAGTAGTTTCGGCAAATCCTCCATTTTCTCAGCTTCCAAACAGCGCCAGCGGAACCCTTCCACTTCTCCTTCTCCTTCTTCATCTCTCTCCGACCTTGCGAGAGCCGAGCGACCCCCTTTCTCTCTCCGCCATGTTCCGACGAGCTTCCAGCCTTTTGGCCCGCCCTTTTCTCTCTGCAAGGACAAGATCCTTCTCCACCGATCTGCCGGCCGCCTCTTCCACCGACGATGCCTTTGTCTCCGCCTGGAAGAAGGTGATCCCCAATATTGACCCTCCTAAAACTCCTCTATCTTTCATGGCTCCTCGTCCTGCTACGCCTTCTTCCATCCCTTCTAAGCTCACTGTCAACTTCGTCCTTCCCTATGCCTCCGAACTCTCTGCCAAAGAGGTTGACATGGTCATAATTCCAGCAACAACTGGGCAAATGGGTGTTCTTCCTGGTCATGTAGCAACAATCGCAGAGTTGAAGCCAGGGGTTTTATCAGTACACGAAGGGACTGACATCAAAAAATACTTCGTGAGCAGTGGTTTTGCATTCATCCATGGCAACTCGTATGCTGACATAATCGCTGTCGAAGCTGTGCCTGTAGATCAAATCGATGCCAGCCAAGTACAGAAGGGTCTTGCCGAATTCACCCAAAAGTTGAACTCTGCCTCGACAGACTTGGAGAAAGCCGAAGCCCAAATTGGAGTCGACGTGCACAGTGCCCTGAATTCTGCCCTTACAGGATAGTTTCCTCGGCTCTCAAATTGGCCACCCTTCTGTTTATCTATTTCCAATTGTATGTTCCTTCATAACACTGCCTCATTGACAGTTTGAATTGTCTTCTTTGGTGGAAATACCCTCTGGAACATCATCTTGGGGCTTACCTTTCTTGTGTTGAATTTGAAGTCATTCACAAATAAATATATTAGGATGGTTTTTTGCTTGGCCTCGTAGCTGGTCATAATCTGTTGCCACCAAACCTCACAAACAAGGGAAATTTTTCATTTGAATCTGTATGAATGATTCAAATCATGTCTCATTTGAGAACAATTTTCAAAGGTAAGAATATTCTGAATCTATTTGTATTCCTCTTTTTTCTTTGGTAAAGGTTGAAGGCCATGCATCTTTAGTATTGTGATTGATCTTCCTATTGGTGAATTTGTAGGCTATTAATTTAGATGGTAATCTTTTTTTAAAAAAAAAGCTCTTTTTAATGATTTGTACATCAATTATGTAAATAACCAAATATGATATGGAGCATTGTT

Coding sequence (CDS)

ATGAGGCTCAGATCCACAGTAGTTTCGGCAAATCCTCCATTTTCTCAGCTTCCAAACAGCGCCAGCGGAACCCTTCCACTTCTCCTTCTCCTTCTTCATCTCTCTCCGACCTTGCGAGAGCCGAGCGACCCCCTTTCTCTCTCCGCCATGTTCCGACGAGCTTCCAGCCTTTTGGCCCGCCCTTTTCTCTCTGCAAGGACAAGATCCTTCTCCACCGATCTGCCGGCCGCCTCTTCCACCGACGATGCCTTTGTCTCCGCCTGGAAGAAGGTGATCCCCAATATTGACCCTCCTAAAACTCCTCTATCTTTCATGGCTCCTCGTCCTGCTACGCCTTCTTCCATCCCTTCTAAGCTCACTGTCAACTTCGTCCTTCCCTATGCCTCCGAACTCTCTGCCAAAGAGGTTGACATGGTCATAATTCCAGCAACAACTGGGCAAATGGGTGTTCTTCCTGGTCATGTAGCAACAATCGCAGAGTTGAAGCCAGGGGTTTTATCAGTACACGAAGGGACTGACATCAAAAAATACTTCGTGAGCAGTGGTTTTGCATTCATCCATGGCAACTCGTATGCTGACATAATCGCTGTCGAAGCTGTGCCTGTAGATCAAATCGATGCCAGCCAAGTACAGAAGGGTCTTGCCGAATTCACCCAAAAGTTGAACTCTGCCTCGACAGACTTGGAGAAAGCCGAAGCCCAAATTGGAGTCGACGTGCACAGTGCCCTGAATTCTGCCCTTACAGGATAG

Protein sequence

MRLRSTVVSANPPFSQLPNSASGTLPLLLLLLHLSPTLREPSDPLSLSAMFRRASSLLARPFLSARTRSFSTDLPAASSTDDAFVSAWKKVIPNIDPPKTPLSFMAPRPATPSSIPSKLTVNFVLPYASELSAKEVDMVIIPATTGQMGVLPGHVATIAELKPGVLSVHEGTDIKKYFVSSGFAFIHGNSYADIIAVEAVPVDQIDASQVQKGLAEFTQKLNSASTDLEKAEAQIGVDVHSALNSALTG

Homology

[Close]

BLAST of Lsi05G018890 vs. ExPASy Swiss-Prot
Match: Q40089 (ATP synthase subunit delta', mitochondrial OS=Ipomoea batatas OX=4120 PE=1 SV=1)

HSP 1 Score: 313.2 bits (801), Expect = 2.7e-84
Identity = 160/200 (80.00%), Postives = 178/200 (89.00%), Query Frame = 0


Query: 50  MFRRASSLLARPFLSARTRSFSTDLPAASSTDDAFVSAWKKVIPNIDPPKTPLSFMAPRP 109
           MFR +S LLAR       R FSTDLPA ++ D  FV AWKK+IPN+DPPKTP ++MAPRP
Sbjct: 1   MFRHSSRLLARATTMGWRRPFSTDLPAETAADSTFVEAWKKLIPNVDPPKTPSAYMAPRP 60

Query: 110 ATPSSIPSKLTVNFVLPYASELSAKEVDMVIIPATTGQMGVLPGHVATIAELKPGVLSVH 169
           ATPSSIPSKLTVNFVLPY+SEL+ KEVDMVIIPATTGQMGVLPGHVATIAELKPGV+SVH
Sbjct: 61  ATPSSIPSKLTVNFVLPYSSELAGKEVDMVIIPATTGQMGVLPGHVATIAELKPGVMSVH 120

Query: 170 EGTDIKKYFVSSGFAFIHGNSYADIIAVEAVPVDQIDASQVQKGLAEFTQKLNSASTDLE 229
           EG D+ KYFVS GFAFIH NS+ADIIAVEAVP+D+IDA+ VQKGLAEFTQKLN+ASTD+E
Sbjct: 121 EGNDVSKYFVSGGFAFIHANSFADIIAVEAVPLDRIDANLVQKGLAEFTQKLNTASTDVE 180

Query: 230 KAEAQIGVDVHSALNSALTG 250
           KAEAQIGVDVHSALN+ALTG
Sbjct: 181 KAEAQIGVDVHSALNAALTG 200

[Close]

BLAST of Lsi05G018890 vs. ExPASy Swiss-Prot
Match: Q96252 (ATP synthase subunit delta', mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At5g47030 PE=1 SV=1)

HSP 1 Score: 291.2 bits (744), Expect = 1.1e-77
Identity = 152/205 (74.15%), Postives = 177/205 (86.34%), Query Frame = 0


Query: 50  MFRRASSLLARPFLSA-----RTRSFSTDLPAASSTDDAFVSAWKKVIPNIDPPKTPLSF 109
           MF++AS LL+R   +A      TR+FST+LP  S+ D  FV AWKKV PN+DPP+TP +F
Sbjct: 1   MFKQASRLLSRSVAAASSKSVTTRAFSTELP--STLDSTFVEAWKKVAPNMDPPQTPSAF 60

Query: 110 MAPRPATPSSIPSKLTVNFVLPYASELSAKEVDMVIIPATTGQMGVLPGHVATIAELKPG 169
           M PRP+TPSSIP+KLTVNFVLPY SEL+ KEVDMVIIPA+TGQMGVLPGHV TIAELKPG
Sbjct: 61  MKPRPSTPSSIPTKLTVNFVLPYTSELTGKEVDMVIIPASTGQMGVLPGHVPTIAELKPG 120

Query: 170 VLSVHEGTDIKKYFVSSGFAFIHGNSYADIIAVEAVPVDQIDASQVQKGLAEFTQKLNSA 229
           ++SVHEGTD+KKYF+SSGFAF+H NS ADIIAVEAVP+D ID SQVQKGLAEF QKL SA
Sbjct: 121 IMSVHEGTDVKKYFLSSGFAFLHANSVADIIAVEAVPLDHIDPSQVQKGLAEFQQKLASA 180

Query: 230 STDLEKAEAQIGVDVHSALNSALTG 250
           +TDLEKAEAQIGV+VHSA+N+AL+G
Sbjct: 181 TTDLEKAEAQIGVEVHSAINAALSG 203

[Close]

BLAST of Lsi05G018890 vs. ExPASy Swiss-Prot
Match: Q41000 (ATP synthase subunit delta', mitochondrial OS=Pisum sativum OX=3888 PE=3 SV=1)

HSP 1 Score: 274.6 bits (701), Expect = 1.1e-72
Identity = 149/201 (74.13%), Postives = 170/201 (84.58%), Query Frame = 0


Query: 50  MFRRA-SSLLARPFLSARTRSFSTDLPAASSTDDAFVSAWKKVIPNIDPPKTPLSFMAPR 109
           MFRRA S+ L+R   ++ TR FSTD+ A  +T+ +FV AW+KV PNIDPPKTPL F+  R
Sbjct: 1   MFRRATSTFLSR---ASATRRFSTDV-ATPATNSSFVEAWRKVSPNIDPPKTPLEFLKTR 60

Query: 110 PATPSSIPSKLTVNFVLPYASELSAKEVDMVIIPATTGQMGVLPGHVATIAELKPGVLSV 169
           P  PS+IP+KLTVNFVLPY+S+L+AKEVD VIIPATTG+MGVLPGHVATIAELKPGVL+V
Sbjct: 61  PPVPSTIPTKLTVNFVLPYSSQLAAKEVDSVIIPATTGEMGVLPGHVATIAELKPGVLTV 120

Query: 170 HEGTDIKKYFVSSGFAFIHGNSYADIIAVEAVPVDQIDASQVQKGLAEFTQKLNSASTDL 229
            EGTD  KYFVSSGF FIH NS ADIIAVEAVPV+Q+D   VQKGL EFTQKLNSA+TDL
Sbjct: 121 QEGTDTTKYFVSSGFRFIHANSVADIIAVEAVPVNQLDRDLVQKGLQEFTQKLNSATTDL 180

Query: 230 EKAEAQIGVDVHSALNSALTG 250
           EK EAQIG+DV SALNSALTG
Sbjct: 181 EKREAQIGIDVDSALNSALTG 197

[Close]

BLAST of Lsi05G018890 vs. ExPASy Swiss-Prot
Match: Q55F42 (ATP synthase subunit delta, mitochondrial OS=Dictyostelium discoideum OX=44689 GN=atp5f1d PE=3 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 2.8e-20
Identity = 55/136 (40.44%), Postives = 84/136 (61.76%), Query Frame = 0


Query: 110 ATPSSIPSK-LTVNFVLPYASELSAKEVDMVIIPATTGQMGVLPGHVATIAELKPGVLSV 169
           AT +S  S  LT + + P+ +    K+  +V +P   G  GV   HV  IAELKPGV+ +
Sbjct: 27  ATEASATSDLLTFSLLSPHQTIYKDKKAQLVTLPGAKGIFGVAKNHVPRIAELKPGVIQI 86

Query: 170 -HEGTDIKKYFVSSGFAFIHGNSYADIIAVEAVPVDQIDASQVQKGLAEFTQKLNSASTD 229
            HE  D++K+F+S GFAF++ ++   I  +EAVP+DQ+DA +V+ GLA +TQ  N A  +
Sbjct: 87  NHENGDLEKFFISGGFAFVNPDASCYINTIEAVPIDQLDAEEVKNGLARYTQLYNDAQEE 146

Query: 230 LEKAEAQIGVDVHSAL 244
             KA A IG++ +  +
Sbjct: 147 NAKAVALIGLETYQQM 162

[Close]

BLAST of Lsi05G018890 vs. ExPASy Swiss-Prot
Match: Q92196 (ATP synthase subunit delta, mitochondrial OS=Agaricus bisporus OX=5341 GN=atpD PE=2 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.3e-17
Identity = 50/135 (37.04%), Postives = 79/135 (58.52%), Query Frame = 0


Query: 113 SSIPSKLTVNFVLPYASELSAKEVDMVIIPATTGQMGVLPGHVATIAELKPGVLSVHEGT 172
           + I  KL ++  LP+ +  S+++V  V IPA +G MG+L  HV +I  L+PGV+ V E +
Sbjct: 26  AEISDKLKLSLALPHKAIFSSQDVVQVNIPAESGDMGILSSHVPSIEPLRPGVVEVVEDS 85

Query: 173 DIKKYFVSSGFAFIHGNSYADIIAVEAVPVDQIDASQVQKGLAEFTQKLNSASTDLEKAE 232
             +K+FVS GFA +H N+   I  VEA P++      ++  L E  +    + ++ +K E
Sbjct: 86  GSQKWFVSGGFATVHPNNRLTINVVEAAPLEDFSIEAIRANLQEANKVAAGSGSEADKME 145

Query: 233 AQIGVDVHSALNSAL 248
           AQI  +V+ AL  AL
Sbjct: 146 AQIEAEVYEALQHAL 160

[Close]

BLAST of Lsi05G018890 vs. ExPASy TrEMBL
Match: A0A5A7TZZ3 (ATP synthase subunit delta OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G003150 PE=3 SV=1)

HSP 1 Score: 365.2 bits (936), Expect = 2.2e-97
Identity = 191/200 (95.50%), Postives = 197/200 (98.50%), Query Frame = 0


Query: 50  MFRRASSLLARPFLSARTRSFSTDLPAASSTDDAFVSAWKKVIPNIDPPKTPLSFMAPRP 109
           MFRRAS+LLARPFLSARTRSFS+DLPAA ST+DAFVSAWKKVIPNIDPPKTPLSFMAPRP
Sbjct: 1   MFRRASTLLARPFLSARTRSFSSDLPAAGSTEDAFVSAWKKVIPNIDPPKTPLSFMAPRP 60

Query: 110 ATPSSIPSKLTVNFVLPYASELSAKEVDMVIIPATTGQMGVLPGHVATIAELKPGVLSVH 169
           ATPSSIPSKLTVN VLPY+SELSAKEVDMVIIPATTGQMGVLPGHV TIAELKPGVLSVH
Sbjct: 61  ATPSSIPSKLTVNLVLPYSSELSAKEVDMVIIPATTGQMGVLPGHVPTIAELKPGVLSVH 120

Query: 170 EGTDIKKYFVSSGFAFIHGNSYADIIAVEAVPVDQIDASQVQKGLAEFTQKLNSASTDLE 229
           EG+DIKKYFVSSGFAFIHGNSYADIIAVEAVPVDQIDA+QVQKGLAEFTQKLNSASTDLE
Sbjct: 121 EGSDIKKYFVSSGFAFIHGNSYADIIAVEAVPVDQIDAAQVQKGLAEFTQKLNSASTDLE 180

Query: 230 KAEAQIGVDVHSALNSALTG 250
           KAEAQIGVDVHSALNSALTG
Sbjct: 181 KAEAQIGVDVHSALNSALTG 200

[Close]

BLAST of Lsi05G018890 vs. ExPASy TrEMBL
Match: A0A1S3AW39 (ATP synthase subunit delta', mitochondrial OS=Cucumis melo OX=3656 GN=LOC103483438 PE=3 SV=1)

HSP 1 Score: 365.2 bits (936), Expect = 2.2e-97
Identity = 191/200 (95.50%), Postives = 197/200 (98.50%), Query Frame = 0


Query: 50  MFRRASSLLARPFLSARTRSFSTDLPAASSTDDAFVSAWKKVIPNIDPPKTPLSFMAPRP 109
           MFRRAS+LLARPFLSARTRSFS+DLPAA ST+DAFVSAWKKVIPNIDPPKTPLSFMAPRP
Sbjct: 1   MFRRASTLLARPFLSARTRSFSSDLPAAGSTEDAFVSAWKKVIPNIDPPKTPLSFMAPRP 60

Query: 110 ATPSSIPSKLTVNFVLPYASELSAKEVDMVIIPATTGQMGVLPGHVATIAELKPGVLSVH 169
           ATPSSIPSKLTVN VLPY+SELSAKEVDMVIIPATTGQMGVLPGHV TIAELKPGVLSVH
Sbjct: 61  ATPSSIPSKLTVNLVLPYSSELSAKEVDMVIIPATTGQMGVLPGHVPTIAELKPGVLSVH 120

Query: 170 EGTDIKKYFVSSGFAFIHGNSYADIIAVEAVPVDQIDASQVQKGLAEFTQKLNSASTDLE 229
           EG+DIKKYFVSSGFAFIHGNSYADIIAVEAVPVDQIDA+QVQKGLAEFTQKLNSASTDLE
Sbjct: 121 EGSDIKKYFVSSGFAFIHGNSYADIIAVEAVPVDQIDAAQVQKGLAEFTQKLNSASTDLE 180

Query: 230 KAEAQIGVDVHSALNSALTG 250
           KAEAQIGVDVHSALNSALTG
Sbjct: 181 KAEAQIGVDVHSALNSALTG 200

[Close]

BLAST of Lsi05G018890 vs. ExPASy TrEMBL
Match: A0A0A0L7T8 (ATP-synt_DE_N domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G128910 PE=3 SV=1)

HSP 1 Score: 361.7 bits (927), Expect = 2.5e-96
Identity = 189/200 (94.50%), Postives = 195/200 (97.50%), Query Frame = 0


Query: 50  MFRRASSLLARPFLSARTRSFSTDLPAASSTDDAFVSAWKKVIPNIDPPKTPLSFMAPRP 109
           MFRRAS+LLARPFLSARTRSFSTDLPAA S  DAFVSAWKKVIPNIDPPKTPLSFMAPRP
Sbjct: 1   MFRRASTLLARPFLSARTRSFSTDLPAAGSNQDAFVSAWKKVIPNIDPPKTPLSFMAPRP 60

Query: 110 ATPSSIPSKLTVNFVLPYASELSAKEVDMVIIPATTGQMGVLPGHVATIAELKPGVLSVH 169
           ATPSSIPSKLTVN VLPYASELSAKEVDMVIIPATTGQMGVLPGHV TIAELKPGVLSVH
Sbjct: 61  ATPSSIPSKLTVNLVLPYASELSAKEVDMVIIPATTGQMGVLPGHVPTIAELKPGVLSVH 120

Query: 170 EGTDIKKYFVSSGFAFIHGNSYADIIAVEAVPVDQIDASQVQKGLAEFTQKLNSASTDLE 229
           EG++IKKYFVSSGFAFIHGNSYADIIAVEAVP++QIDA+QVQKGLAEFTQKLNSASTDLE
Sbjct: 121 EGSEIKKYFVSSGFAFIHGNSYADIIAVEAVPIEQIDAAQVQKGLAEFTQKLNSASTDLE 180

Query: 230 KAEAQIGVDVHSALNSALTG 250
           KAEAQIGVDVHSALNSALTG
Sbjct: 181 KAEAQIGVDVHSALNSALTG 200

[Close]

BLAST of Lsi05G018890 vs. ExPASy TrEMBL
Match: A0A6J1E9L4 (ATP synthase subunit delta', mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111432026 PE=3 SV=1)

HSP 1 Score: 357.1 bits (915), Expect = 6.1e-95
Identity = 186/200 (93.00%), Postives = 193/200 (96.50%), Query Frame = 0


Query: 50  MFRRASSLLARPFLSARTRSFSTDLPAASSTDDAFVSAWKKVIPNIDPPKTPLSFMAPRP 109
           MFRRASSLLAR   SARTRSFS DLPAASSTDDAFV+AWKK+IPNIDPPKTPLSFM+PRP
Sbjct: 1   MFRRASSLLARSHFSARTRSFSADLPAASSTDDAFVAAWKKMIPNIDPPKTPLSFMSPRP 60

Query: 110 ATPSSIPSKLTVNFVLPYASELSAKEVDMVIIPATTGQMGVLPGHVATIAELKPGVLSVH 169
           ATPSSIPSKLTVNFVLPYASELSAKEVDMVIIPATTGQMGVLPGHVATIAELKPGVLSVH
Sbjct: 61  ATPSSIPSKLTVNFVLPYASELSAKEVDMVIIPATTGQMGVLPGHVATIAELKPGVLSVH 120

Query: 170 EGTDIKKYFVSSGFAFIHGNSYADIIAVEAVPVDQIDASQVQKGLAEFTQKLNSASTDLE 229
           EG D KKYFVSSGFAFIHGNSYADIIAVEAVPV+QID SQVQKGLAEFTQKLNSASTDLE
Sbjct: 121 EGNDTKKYFVSSGFAFIHGNSYADIIAVEAVPVEQIDTSQVQKGLAEFTQKLNSASTDLE 180

Query: 230 KAEAQIGVDVHSALNSALTG 250
           KAEAQIG+DVHSALN+A+TG
Sbjct: 181 KAEAQIGIDVHSALNAAITG 200

[Close]

BLAST of Lsi05G018890 vs. ExPASy TrEMBL
Match: A0A6J1IET0 (ATP synthase subunit delta', mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111473489 PE=3 SV=1)

HSP 1 Score: 355.9 bits (912), Expect = 1.4e-94
Identity = 186/200 (93.00%), Postives = 191/200 (95.50%), Query Frame = 0


Query: 50  MFRRASSLLARPFLSARTRSFSTDLPAASSTDDAFVSAWKKVIPNIDPPKTPLSFMAPRP 109
           MFRRAS+LL RP LSAR RSFS DLPAASSTDDAFV+AWKK IP IDPPKTPLSFMAPRP
Sbjct: 1   MFRRASTLLTRPLLSARARSFSADLPAASSTDDAFVAAWKKAIPTIDPPKTPLSFMAPRP 60

Query: 110 ATPSSIPSKLTVNFVLPYASELSAKEVDMVIIPATTGQMGVLPGHVATIAELKPGVLSVH 169
           ATPSSIP+KLTVNFVLPYASELSAKEVDMVIIPATTGQMGVLPGHVATIAELKPGVLSVH
Sbjct: 61  ATPSSIPTKLTVNFVLPYASELSAKEVDMVIIPATTGQMGVLPGHVATIAELKPGVLSVH 120

Query: 170 EGTDIKKYFVSSGFAFIHGNSYADIIAVEAVPVDQIDASQVQKGLAEFTQKLNSASTDLE 229
           EG+D KKYFVSSGFAFIHGNSYADIIAVEAVPVDQID  QVQKGLAEFTQKLNSASTDLE
Sbjct: 121 EGSDTKKYFVSSGFAFIHGNSYADIIAVEAVPVDQIDPDQVQKGLAEFTQKLNSASTDLE 180

Query: 230 KAEAQIGVDVHSALNSALTG 250
           KAEAQIGVDVHSALN+ALTG
Sbjct: 181 KAEAQIGVDVHSALNAALTG 200

[Close]

BLAST of Lsi05G018890 vs. NCBI nr
Match: XP_038898411.1 (ATP synthase subunit delta', mitochondrial [Benincasa hispida])

HSP 1 Score: 372.5 bits (955), Expect = 2.9e-99
Identity = 197/200 (98.50%), Postives = 197/200 (98.50%), Query Frame = 0


Query: 50  MFRRASSLLARPFLSARTRSFSTDLPAASSTDDAFVSAWKKVIPNIDPPKTPLSFMAPRP 109
           MFRRASSLLARPFLSAR RSFSTDLPAA STDDAFVSAWKKVIPNIDPPKTPLSFMAPRP
Sbjct: 1   MFRRASSLLARPFLSARIRSFSTDLPAAPSTDDAFVSAWKKVIPNIDPPKTPLSFMAPRP 60

Query: 110 ATPSSIPSKLTVNFVLPYASELSAKEVDMVIIPATTGQMGVLPGHVATIAELKPGVLSVH 169
           ATPSSIPSKLTVNFVLPYASELSAKEVDMVIIPATTGQMGVLPGHVATIAELKPGVLSVH
Sbjct: 61  ATPSSIPSKLTVNFVLPYASELSAKEVDMVIIPATTGQMGVLPGHVATIAELKPGVLSVH 120

Query: 170 EGTDIKKYFVSSGFAFIHGNSYADIIAVEAVPVDQIDASQVQKGLAEFTQKLNSASTDLE 229
           EGTDIKKYFVSSGFAFIHGNSYADIIAVEAVPVDQIDASQVQKGLAEFTQKL SASTDLE
Sbjct: 121 EGTDIKKYFVSSGFAFIHGNSYADIIAVEAVPVDQIDASQVQKGLAEFTQKLTSASTDLE 180

Query: 230 KAEAQIGVDVHSALNSALTG 250
           KAEAQIGVDVHSALNSALTG
Sbjct: 181 KAEAQIGVDVHSALNSALTG 200

[Close]

BLAST of Lsi05G018890 vs. NCBI nr
Match: XP_008438277.1 (PREDICTED: ATP synthase subunit delta', mitochondrial [Cucumis melo] >KAA0049112.1 ATP synthase subunit delta' [Cucumis melo var. makuwa] >TYK17451.1 ATP synthase subunit delta' [Cucumis melo var. makuwa])

HSP 1 Score: 365.2 bits (936), Expect = 4.6e-97
Identity = 191/200 (95.50%), Postives = 197/200 (98.50%), Query Frame = 0


Query: 50  MFRRASSLLARPFLSARTRSFSTDLPAASSTDDAFVSAWKKVIPNIDPPKTPLSFMAPRP 109
           MFRRAS+LLARPFLSARTRSFS+DLPAA ST+DAFVSAWKKVIPNIDPPKTPLSFMAPRP
Sbjct: 1   MFRRASTLLARPFLSARTRSFSSDLPAAGSTEDAFVSAWKKVIPNIDPPKTPLSFMAPRP 60

Query: 110 ATPSSIPSKLTVNFVLPYASELSAKEVDMVIIPATTGQMGVLPGHVATIAELKPGVLSVH 169
           ATPSSIPSKLTVN VLPY+SELSAKEVDMVIIPATTGQMGVLPGHV TIAELKPGVLSVH
Sbjct: 61  ATPSSIPSKLTVNLVLPYSSELSAKEVDMVIIPATTGQMGVLPGHVPTIAELKPGVLSVH 120

Query: 170 EGTDIKKYFVSSGFAFIHGNSYADIIAVEAVPVDQIDASQVQKGLAEFTQKLNSASTDLE 229
           EG+DIKKYFVSSGFAFIHGNSYADIIAVEAVPVDQIDA+QVQKGLAEFTQKLNSASTDLE
Sbjct: 121 EGSDIKKYFVSSGFAFIHGNSYADIIAVEAVPVDQIDAAQVQKGLAEFTQKLNSASTDLE 180

Query: 230 KAEAQIGVDVHSALNSALTG 250
           KAEAQIGVDVHSALNSALTG
Sbjct: 181 KAEAQIGVDVHSALNSALTG 200

[Close]

BLAST of Lsi05G018890 vs. NCBI nr
Match: XP_004133965.1 (ATP synthase subunit delta', mitochondrial [Cucumis sativus] >KGN56682.1 hypothetical protein Csa_011353 [Cucumis sativus])

HSP 1 Score: 361.7 bits (927), Expect = 5.1e-96
Identity = 189/200 (94.50%), Postives = 195/200 (97.50%), Query Frame = 0


Query: 50  MFRRASSLLARPFLSARTRSFSTDLPAASSTDDAFVSAWKKVIPNIDPPKTPLSFMAPRP 109
           MFRRAS+LLARPFLSARTRSFSTDLPAA S  DAFVSAWKKVIPNIDPPKTPLSFMAPRP
Sbjct: 1   MFRRASTLLARPFLSARTRSFSTDLPAAGSNQDAFVSAWKKVIPNIDPPKTPLSFMAPRP 60

Query: 110 ATPSSIPSKLTVNFVLPYASELSAKEVDMVIIPATTGQMGVLPGHVATIAELKPGVLSVH 169
           ATPSSIPSKLTVN VLPYASELSAKEVDMVIIPATTGQMGVLPGHV TIAELKPGVLSVH
Sbjct: 61  ATPSSIPSKLTVNLVLPYASELSAKEVDMVIIPATTGQMGVLPGHVPTIAELKPGVLSVH 120

Query: 170 EGTDIKKYFVSSGFAFIHGNSYADIIAVEAVPVDQIDASQVQKGLAEFTQKLNSASTDLE 229
           EG++IKKYFVSSGFAFIHGNSYADIIAVEAVP++QIDA+QVQKGLAEFTQKLNSASTDLE
Sbjct: 121 EGSEIKKYFVSSGFAFIHGNSYADIIAVEAVPIEQIDAAQVQKGLAEFTQKLNSASTDLE 180

Query: 230 KAEAQIGVDVHSALNSALTG 250
           KAEAQIGVDVHSALNSALTG
Sbjct: 181 KAEAQIGVDVHSALNSALTG 200

[Close]

BLAST of Lsi05G018890 vs. NCBI nr
Match: KAG7028721.1 (hypothetical protein SDJN02_09902, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 359.4 bits (921), Expect = 2.5e-95
Identity = 188/206 (91.26%), Postives = 195/206 (94.66%), Query Frame = 0


Query: 44  PLSLSAMFRRASSLLARPFLSARTRSFSTDLPAASSTDDAFVSAWKKVIPNIDPPKTPLS 103
           P  +SAMFRRAS+LL RP LSAR RSFS DLPAASSTDDAFV+AWKK IP IDPP+TPLS
Sbjct: 29  PTPVSAMFRRASTLLTRPLLSARARSFSADLPAASSTDDAFVAAWKKAIPTIDPPRTPLS 88

Query: 104 FMAPRPATPSSIPSKLTVNFVLPYASELSAKEVDMVIIPATTGQMGVLPGHVATIAELKP 163
           FMAPRPATPSSIP+KLTVNFVLPYASELSAKEVDMVIIPATTGQMGVLPGHVATIAELKP
Sbjct: 89  FMAPRPATPSSIPTKLTVNFVLPYASELSAKEVDMVIIPATTGQMGVLPGHVATIAELKP 148

Query: 164 GVLSVHEGTDIKKYFVSSGFAFIHGNSYADIIAVEAVPVDQIDASQVQKGLAEFTQKLNS 223
           GVLSVHEG+D KKYFVSSGFAFIHGNSYADIIAVEAVPVDQID  QVQKGLAEFTQKLNS
Sbjct: 149 GVLSVHEGSDTKKYFVSSGFAFIHGNSYADIIAVEAVPVDQIDPDQVQKGLAEFTQKLNS 208

Query: 224 ASTDLEKAEAQIGVDVHSALNSALTG 250
           ASTDLEKAEAQIGVDVHSALN+ALTG
Sbjct: 209 ASTDLEKAEAQIGVDVHSALNAALTG 234

[Close]

BLAST of Lsi05G018890 vs. NCBI nr
Match: KAG6582512.1 (hypothetical protein SDJN03_22514, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 358.6 bits (919), Expect = 4.3e-95
Identity = 187/200 (93.50%), Postives = 194/200 (97.00%), Query Frame = 0


Query: 50  MFRRASSLLARPFLSARTRSFSTDLPAASSTDDAFVSAWKKVIPNIDPPKTPLSFMAPRP 109
           MFRRASSLLAR   SARTRSFS DLPAASSTDDAFV+AWKK+IPNIDPPKTPLSFM+PRP
Sbjct: 1   MFRRASSLLARSHFSARTRSFSADLPAASSTDDAFVAAWKKMIPNIDPPKTPLSFMSPRP 60

Query: 110 ATPSSIPSKLTVNFVLPYASELSAKEVDMVIIPATTGQMGVLPGHVATIAELKPGVLSVH 169
           ATPSSIPSKLTVNFVLPYASELSAKEVDMVIIPATTGQMGVLPGHVATIAELKPGVLSVH
Sbjct: 61  ATPSSIPSKLTVNFVLPYASELSAKEVDMVIIPATTGQMGVLPGHVATIAELKPGVLSVH 120

Query: 170 EGTDIKKYFVSSGFAFIHGNSYADIIAVEAVPVDQIDASQVQKGLAEFTQKLNSASTDLE 229
           EG D KKYFVSSGFAFIHGNSYADIIAVEAVPV+QIDASQVQKGLAEFTQKLNSASTDLE
Sbjct: 121 EGNDTKKYFVSSGFAFIHGNSYADIIAVEAVPVEQIDASQVQKGLAEFTQKLNSASTDLE 180

Query: 230 KAEAQIGVDVHSALNSALTG 250
           KAEAQIG+DVHSALN+A+TG
Sbjct: 181 KAEAQIGIDVHSALNAAITG 200

[Close]

BLAST of Lsi05G018890 vs. TAIR 10
Match: AT5G47030.1 (ATPase, F1 complex, delta/epsilon subunit )

HSP 1 Score: 291.2 bits (744), Expect = 7.9e-79
Identity = 152/205 (74.15%), Postives = 177/205 (86.34%), Query Frame = 0


Query: 50  MFRRASSLLARPFLSA-----RTRSFSTDLPAASSTDDAFVSAWKKVIPNIDPPKTPLSF 109
           MF++AS LL+R   +A      TR+FST+LP  S+ D  FV AWKKV PN+DPP+TP +F
Sbjct: 1   MFKQASRLLSRSVAAASSKSVTTRAFSTELP--STLDSTFVEAWKKVAPNMDPPQTPSAF 60

Query: 110 MAPRPATPSSIPSKLTVNFVLPYASELSAKEVDMVIIPATTGQMGVLPGHVATIAELKPG 169
           M PRP+TPSSIP+KLTVNFVLPY SEL+ KEVDMVIIPA+TGQMGVLPGHV TIAELKPG
Sbjct: 61  MKPRPSTPSSIPTKLTVNFVLPYTSELTGKEVDMVIIPASTGQMGVLPGHVPTIAELKPG 120

Query: 170 VLSVHEGTDIKKYFVSSGFAFIHGNSYADIIAVEAVPVDQIDASQVQKGLAEFTQKLNSA 229
           ++SVHEGTD+KKYF+SSGFAF+H NS ADIIAVEAVP+D ID SQVQKGLAEF QKL SA
Sbjct: 121 IMSVHEGTDVKKYFLSSGFAFLHANSVADIIAVEAVPLDHIDPSQVQKGLAEFQQKLASA 180

Query: 230 STDLEKAEAQIGVDVHSALNSALTG 250
           +TDLEKAEAQIGV+VHSA+N+AL+G
Sbjct: 181 TTDLEKAEAQIGVEVHSAINAALSG 203

The following BLAST results are available for this feature:

BLAST of Lsi05G018890 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q40089	2.7e-84	80.00	ATP synthase subunit delta', mitochondrial OS=Ipomoea batatas OX=4120 PE=1 SV=1	[more]
Q96252	1.1e-77	74.15	ATP synthase subunit delta', mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At...	[more]
Q41000	1.1e-72	74.13	ATP synthase subunit delta', mitochondrial OS=Pisum sativum OX=3888 PE=3 SV=1	[more]
Q55F42	2.8e-20	40.44	ATP synthase subunit delta, mitochondrial OS=Dictyostelium discoideum OX=44689 G...	[more]
Q92196	1.3e-17	37.04	ATP synthase subunit delta, mitochondrial OS=Agaricus bisporus OX=5341 GN=atpD P...	[more]

BLAST of Lsi05G018890 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TZZ3	2.2e-97	95.50	ATP synthase subunit delta OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff...	[more]
A0A1S3AW39	2.2e-97	95.50	ATP synthase subunit delta', mitochondrial OS=Cucumis melo OX=3656 GN=LOC1034834...	[more]
A0A0A0L7T8	2.5e-96	94.50	ATP-synt_DE_N domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G1289...	[more]
A0A6J1E9L4	6.1e-95	93.00	ATP synthase subunit delta', mitochondrial-like OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1IET0	1.4e-94	93.00	ATP synthase subunit delta', mitochondrial-like OS=Cucurbita maxima OX=3661 GN=L...	[more]

BLAST of Lsi05G018890 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038898411.1	2.9e-99	98.50	ATP synthase subunit delta', mitochondrial [Benincasa hispida]	[more]
XP_008438277.1	4.6e-97	95.50	PREDICTED: ATP synthase subunit delta', mitochondrial [Cucumis melo] >KAA0049112...	[more]
XP_004133965.1	5.1e-96	94.50	ATP synthase subunit delta', mitochondrial [Cucumis sativus] >KGN56682.1 hypothe...	[more]
KAG7028721.1	2.5e-95	91.26	hypothetical protein SDJN02_09902, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6582512.1	4.3e-95	93.50	hypothetical protein SDJN03_22514, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Lsi05G018890 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G47030.1	7.9e-79	74.15	ATPase, F1 complex, delta/epsilon subunit	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 214..234
None	No IPR available	GENE3D	1.20.5.440		coord: 206..248 e-value: 1.9E-8 score: 36.0
None	No IPR available	PANTHER	PTHR13822:SF20	ATP SYNTHASE SUBUNIT DELTA', MITOCHONDRIAL	coord: 50..249
IPR020546	ATP synthase, F1 complex, delta/epsilon subunit, N-terminal	PFAM	PF02823	ATP-synt_DE_N	coord: 119..190 e-value: 8.8E-16 score: 57.6
IPR036771	F0F1 ATP synthase delta/epsilon subunit, N-terminal	GENE3D	2.60.15.10		coord: 107..205 e-value: 2.4E-25 score: 90.4
IPR036771	F0F1 ATP synthase delta/epsilon subunit, N-terminal	SUPERFAMILY	51344	Epsilon subunit of F1F0-ATP synthase N-terminal domain	coord: 119..200
IPR001469	ATP synthase, F1 complex, delta/epsilon subunit	PANTHER	PTHR13822	ATP SYNTHASE DELTA/EPSILON CHAIN	coord: 50..249
IPR001469	ATP synthase, F1 complex, delta/epsilon subunit	HAMAP	MF_00530	ATP_synth_epsil_bac	coord: 117..237 score: 14.940649
IPR001469	ATP synthase, F1 complex, delta/epsilon subunit	CDD	cd12152	F1-ATPase_delta	coord: 119..242 e-value: 2.07732E-36 score: 123.391

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi05G018890.1	Lsi05G018890.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015986	ATP synthesis coupled proton transport
cellular_component	GO:0000275	mitochondrial proton-transporting ATP synthase complex, catalytic sector F(1)
cellular_component	GO:0045261	proton-transporting ATP synthase complex, catalytic core F(1)
molecular_function	GO:0046933	proton-transporting ATP synthase activity, rotational mechanism