Lsi05G017970 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi05G017970
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUnknown protein
Locationchr05: 25267372 .. 25269660 (+)
RNA-Seq ExpressionLsi05G017970
SyntenyLsi05G017970
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTAGATACCAAATTACCCCTAAGCTCTGCCAATATAAGTGCCTAAATATACTTTATATTCTGAATATGATAATCAGATAATCTCATTCACTCATCTACCAGTCACTATCTTATTGTTATATGACCTAATTCAGTTCTTCATATTGAATGCAATACATACACATTCATTCAACATTAACTGAACTCGAAATAACTTTATTGGACAATTTAATTTACAAAAATGAACCGCTACACATAAATTATGCTTAAGTTGGGTAACAAATATAGGACAGACAGATGTGTAAAAATTGGATACCTCATGTCCCCTCATAACGAACATCCAAAGATGTCAAGGCATCTCCATTTTTATCCCCAACCATGCCATTCCGGTTCTGGTTCCAGTTCCAATCAGTGTGTTTTACAGTGAAAAGCAGTGGTTTCTTGTGTATCCTCCAATGGTTTTAACTTTTAAGGCCCACTTCAATTCTCATGAGTCAACCCTTTCTGGCAGAAACTTGATCAACCTGCCTAGCATGGGGAAGGGGAGAAGGGGCCCTAAAAATTTGGATCTACTGTCAAAGATTTTACAAATTCAAAACTTTCGTGGCCACTAGAAACAGCATTAAAGCAAAAACGGTATTTACAAGGACTGCAAGTAATTTATGGACTAGCTGATCAGGATCGGCAGTAACATTTGTATTTAATGTATTTCATATAAATTAAGACAGCAGACTCCTGATTGATACCTTTATTATCTGCCTTTTCGGCGACCTTTCGAGCCTGCACAATCTGAACAGTACCATTTTCCTTTTGGTTGTTCTTTTAGACCGACACAGCCAAAATGAAACCATTCGATCTTGCACTGTATGAAAGGGAAGACTGACTTAGCTTATAGACTCAAACCACCAAAAAAATTGGAAATAGAGGGAGGAAAGGGTTGTCGCATACATTAGGGTTATCACAGGCAACCATCTCCCCGTAACTAACTTGGTTGCAGAGACAGTAAGTTGGTTCATTTGGATCAACTGGTAATTCAAGTTCCATTCCTGTGGTAATTGCAGCAGTTGGCGCTTCTGTAGCAGCAGCTGCAGCCGCAGCCTGGCCATTTCTTCTGTAGAAAATAGTTTCATTATTGACGAAGTCCTCAATCTCTTGCTAAACGTGCATACCATAAATGTTACTGTAGCATATACTATCCCCAATTCATCACAAATATTAAGTGCCTAAAGTAATTATACAACCGAAAGTAATTGGTGTCATTTGTCAGTTTAATATTATTCATGTGATACACACACACACATTATTGTATGTACGTACGAAATTATCTTACTTTTTACGCCCGCCTCTACCACCTTCTGTTCCCCGTCCAGATTTTGTGTTACCATCCACACTTGGAGCTGGTAACCCAGTTGAAGCAGCATTTCCTCTTTCTGCAAATAACAATATATAGAGGATGGGAGTTGGACCCAAAATGAGTGTGATAAATGCATTTATACTCCATATTAGCAGGACCATAGAGGATCATAAGAATACAGGATATCAAAGATGGAAACAAATGATTACCTTGACGAAGCTTTTCATCAAAATTCTTCAAATACTGGTCAAGCTGTTGTATGTGGGTATCTACCTGAAGCACAATACAAATGAACAGAATAGGTAAGAATATAAACAATAAGAAGAAGCCTTGACCTTTTTCTAGTCAAATAACAAAAGAAAGCACACACAAAACAACGTCGCTATTTACAGATGATAAAAAAAAAAAAAAAATATCATTGAAGCTGCACTAATGAAGGTCAAGGATGAAGTACTAGTTTCTATGGTAATCATTGAGATTTGAGACTGAATGAGAAAAACCTGGGATACTCCTCCATACCTCTCTCTCTACGTATTAGTCAATGACAATGATAAACATGAAGGATATTTTGAAATGGTCTTTTCTAAGCAAGATGTTATAAGGGACAAGTGCATAAGTATAACAATGCAAACACAGAACATTCATTATAAACATTAAACATCATACACCCTGCTTGCATTTTGTAAAAATGGTCAAACTATTTTATTGTTTTCTTATATTAACTTGAATCATTCTAAGCAGAAAATTAATGTCCTGACGATTATAATAAAGTGGAGCGTGCCTCAGTTCAAAGTCACCCACACAATCTGTTAATAAACACTACTTAAAAAAGTTTCAAAGACAGTTGGACATACCAAATCATATGCCTGAACAGCAAGGGCAACCTTTTCATCGGCAATTCTGATGCTATGCTTCTGTTCATCAAGAGCTTCATCAGAGAATCTAATGAGTGA

mRNA sequence

ATGGACAGATGTGTAAAAATTGGATACCTCATGTCCCCTCATAACGAACATCCAAAGATGTCAAGGCATCTCCATTTTTATCCCCAACCATGCCATTCCGGTTCTGGTTCCAGTTCCAATCAGTGTGCCCACTTCAATTCTCATGAGTCAACCCTTTCTGGCAGAAACTTGATCAACCTGCCTAGCATGGGGAAGGGGAGAAGGGGCCCTAAAAATTTGGATCTACTATTTTACAAATTCAAAACTTTCGTGGCCACTAGAAACAGCATTAAAGCAAAAACGACCGACACAGCCAAAATGAAACCATTCGATCTTGCACTGACCATAGAGGATCATAAGAATACAGGATATCAAAGATGGAAACAAATGATTACCTTGACGAAGCTTTTCATCAAAATTCTTCAAATACTGGTCAAGCTGTTGTATGTGGGTATCTACCTGAAGCACAATACAAATGAACAGAATAGTTGGACATACCAAATCATATGCCTGAACAGCAAGGGCAACCTTTTCATCGGCAATTCTGATGCTATGCTTCTGTTCATCAAGAGCTTCATCAGAGAATCTAATGAGTGA

Coding sequence (CDS)

ATGGACAGATGTGTAAAAATTGGATACCTCATGTCCCCTCATAACGAACATCCAAAGATGTCAAGGCATCTCCATTTTTATCCCCAACCATGCCATTCCGGTTCTGGTTCCAGTTCCAATCAGTGTGCCCACTTCAATTCTCATGAGTCAACCCTTTCTGGCAGAAACTTGATCAACCTGCCTAGCATGGGGAAGGGGAGAAGGGGCCCTAAAAATTTGGATCTACTATTTTACAAATTCAAAACTTTCGTGGCCACTAGAAACAGCATTAAAGCAAAAACGACCGACACAGCCAAAATGAAACCATTCGATCTTGCACTGACCATAGAGGATCATAAGAATACAGGATATCAAAGATGGAAACAAATGATTACCTTGACGAAGCTTTTCATCAAAATTCTTCAAATACTGGTCAAGCTGTTGTATGTGGGTATCTACCTGAAGCACAATACAAATGAACAGAATAGTTGGACATACCAAATCATATGCCTGAACAGCAAGGGCAACCTTTTCATCGGCAATTCTGATGCTATGCTTCTGTTCATCAAGAGCTTCATCAGAGAATCTAATGAGTGA

Protein sequence

MDRCVKIGYLMSPHNEHPKMSRHLHFYPQPCHSGSGSSSNQCAHFNSHESTLSGRNLINLPSMGKGRRGPKNLDLLFYKFKTFVATRNSIKAKTTDTAKMKPFDLALTIEDHKNTGYQRWKQMITLTKLFIKILQILVKLLYVGIYLKHNTNEQNSWTYQIICLNSKGNLFIGNSDAMLLFIKSFIRESNE
Homology
[Close]
BLAST of Lsi05G017970 vs. ExPASy TrEMBL
Match: A0A0A0L4U2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G133340 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 1.2e-10
Identity = 41/75 (54.67%), Postives = 47/75 (62.67%), Query Frame = 0 

Query: 2  DRCVKIGYLMSPHNEHPKMSRHLHFYPQPCHSGSGSSSNQCAHFNSHESTLSGRNLINLP 61
          D  VKIGYL SPHNE  K+SRHL FYPQPC SGSGS                 +NLI+LP
Sbjct: 4  DIWVKIGYLESPHNEQTKISRHLPFYPQPCSSGSGSD----------------QNLIDLP 62

Query: 62 SMGKGRRGPKNLDLL 77
           +GKG +G  +LDLL
Sbjct: 64 GLGKGEKGTNDLDLL 62

[Close]
BLAST of Lsi05G017970 vs. NCBI nr
Match: KGN56783.1 (hypothetical protein Csa_011618 [Cucumis sativus])

HSP 1 Score: 76.6 bits (187), Expect = 2.5e-10
Identity = 41/75 (54.67%), Postives = 47/75 (62.67%), Query Frame = 0 

Query: 2  DRCVKIGYLMSPHNEHPKMSRHLHFYPQPCHSGSGSSSNQCAHFNSHESTLSGRNLINLP 61
          D  VKIGYL SPHNE  K+SRHL FYPQPC SGSGS                 +NLI+LP
Sbjct: 4  DIWVKIGYLESPHNEQTKISRHLPFYPQPCSSGSGSD----------------QNLIDLP 62

Query: 62 SMGKGRRGPKNLDLL 77
           +GKG +G  +LDLL
Sbjct: 64 GLGKGEKGTNDLDLL 62

The following BLAST results are available for this feature:
BLAST of Lsi05G017970 vs.
Match NameE-valueIdentityDescription
BLAST of Lsi05G017970 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L4U21.2e-1054.67Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G133340 PE=4 SV=1[more]
BLAST of Lsi05G017970 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN56783.12.5e-1054.67hypothetical protein Csa_011618 [Cucumis sativus][more]
BLAST of Lsi05G017970 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi05G017970.1Lsi05G017970.1mRNA