Lsi05G017440 (gene) Bottle gourd (USVL1VR-Ls) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TTTGATTTTCATTTTGATATATTTTGAATCATACGACAAGGCAACAACATTTAAAAAGAAAAAAAGTTATTATTAAGAAAAAATTGAGATTCTCGTCTGGCGTCGTGAAAACAACACCCCTAAAATTAGAAGAGAGAGAGATTCTCAAAACTTCCGTTACTACTCGAATCCCATTTTTCCCGATATCTTCCTCCTCTCTCCGTTCCTCATCTGTTCAATTCTAATTCCCATTGCTCCGATCACAGTTCTCTCAGCCGCACAAACCACATCCCCAAACCATCTTTTCTTACTGTAAGTATGCATTTCACTGCTTTCTTTTCCGCTCTACGCTGTGATCTGGTTCATTTCTCTATTGATCTCATTTCCTTTCGCTATTTTTTCCCGTAAATTTTCGTTTCTGATACAAGGTAGATGAAATTAAAATATGTTTTAATAATCTGAGATAACTCGACTTTTTTCATCTTAATTTAACTAGTCATTGCCTTGATGTTGATCAACTGCAGTTTTTATCATCGTTTATATTGCTTTTGCGATGTTGAATTGTTTGTTCTTTTTCTTTCTCGATGAGAGGAGCGGTTTTTCTGTTCAACTGGTGAAGGAATCTGTCGGAAATTTTAATAGTTTCTAAGTCTTTGATCTCTGTGAGGGATTCACGAATTTGTTCGAATGCAGCCAAGCATAAAAATGGAGGGAACTGTATTCGCCCCTGCCTTGGAAGGAATTCAGCACGTCAAATCTGAAGCCGGGGAGATTTTGACCAAGCCCTTCTTGGAAGCGTGCAAACATATTCTGCCTGTTATTGGTGCATCCTCCTGATCCTTTTGCCTTTTAAAACTTATCTCTAGTTTCCTGGCGTTTGGTTACGTATGGTTTCATTTTGAGTAAAGAAAAAAGTTTATCTAGAAGATAGATGTGAACTTTATCATTTGCCTACTTGATGTTAGTAGACTGGCATTTCTTTGTTGGTGGACTAAAGAACTAGATTTGTCTTTTTAAGGTTTCTGTAACCTTTAAAGTCGGTTGTTTTATATGATAATTGAATTCCTACTGAAACTTAGCATAAATAATTGCAATCTCATAATCAGATTACCACAAACTGATCAGTTTTACAAATTGTCATTCTTAAAACTAATGTCTCAATATCTAATGCAGACAAGTTTGGAGCTGCTATGGCACTTGTTAAAACTGACATTGGAGGCAACATATCGGTAGGATGCACATGTCGTGATCTTTTCCCATTAATTAAGTAGTTTGACATAAGTTTTTTAATATCATTGTCTATGAGGCCATTTGTATACGCATTTGTTTACTTAAGTATCATGTCTATCTTGTTTTAATTTGTAGGCTAATAGTCCTTTTCACTGGACATAGGACTAGCTAATTTATTTATTATTTGCCAAATAAGATTGGAGTAAATGAGCAACGTGCCTGGAAAAGTAGTGGAAGGAAAATGTGTTGTACCTGAAAAGATAGAACATACATTCAACTTGCGTACTTAAAGGAAACATTTGCATTTGTGATATACAGCTGCAACTGTGTTTTGTACTCCTGAAAGGGAGACAAATGCATGCCTTTCCGGTTCTCAAGTTTTTGACATCATTTCATGCTTGTGCTTTTGTTATAGTCCACTCAATTCTGTAGCAGTTATGTTTTATTCACCTTGCTGTTTGTATCTGTAGAGATTGGAGTCCAAGTATTCTAGCAACCCATCTAGGTTCAACTACTTGTATAACTTGGTGAAACCTGAGATTGAAACTAAAACTGCAAAAGGATCATCCAGTTGCACAAATGGTCTTCTTTGGTTGACAAGGTTAGACAATGTCTGCAGTGAATTTGTTGTTTTTTTTTGTTCTGGCGCAACTTTGTTGAATGTTGTAAAAAAATAAGCCTTTTAACACGAGCATTTAAAAATTTAACTATGTTTATCATTAAAGGCTACAGAAGTAAAATCTAATTGGTGAGGAAGCCTCCGCCATCTTCCATGAGATACTTTAAAGTGATTATCAAAAATCGAAATGATGCAAAATAAATTTCTGTCAACTGAAATAATAAATGAACTACTTCAGTTTTCCTCTGCCCCCTCTGGATTTGTACCCTTGCAATTTTCTTGGTTATTCCATTGCACATGACCTGCGAGTTAGCATTTTCAATGTGACTCTTTGTACTTCCTAATTCAAGGAATGGGTTTTTACTTGCATCTGGAGCGTGAATGATTGAACCAAATTGCCCTTTTTTTAATAGAAAAAAATGCGCAAGTCTAGGATAACACTGCAAATTTGTATCAATTTGATTAACGCACACTTTGGTTGTACTTGCATATTTTGATCCTGTTCAGAGCAATGGATTTCTTGGTAGAATTGTTTCGCAACTTACTGGAGCATCAGGATTGGACAATGTCTCGTGCCTGTACAGAAGCCTATGGCAAGACCTTGAAAAAGTGGCATGGTTGGCTGGCCAGTTCAAGTTTCACTGTAATCCTCTGATGCCTCCATTAATTTTATTTTAAAATTCTTCCTTTCACTTGGGCTTTCAGAAATTCATAGAAGCTTAAAAATGCACTGAAGTATTCAGCTAAACCCCCAAAGCATATTCCTACAGTTATATTTCTGGAATATCTTGTGTAAACACAAGCTTCTTTTGGGTCTAATACTCTTTCATCCCTCATGAGCAAGGTGTAATATACGAGTTCACATTTCAAGAAGCAAAACCATGTTGCAAAAGATACGAACTACAGAATCGTGGCAAATTTTATTAAACCTTCTGCTTCAAATACATCTATAATGTTTGAATCAACTAAACGTTATTGTATATCCTTAAGCTCAATCCATGATTTGGGTTATGAGAAATTATATGTTGATTCTAATCGGATACCGAAATTGTAGGTTGCCATGAAGCTTGCTCCCGATCGTAAGAAGTTTATGGAAGTTATATCAGGCAATGGCAATGTTGAAGTTGACATAGAGAAATTTTGTACAAGTTTTTCACCTCTCCTCCAAGAGATTCACAAGTTTCTGGTAAGATTTACCAAATTCCTGGAGATCTAACTTAAACTTTCAAACTCGATACAACTAGTTCAATTAACTGCAGTTTCTGTCTCTTGCTTTTTCTTATTGAATTTGTCCTGTCATTTGTTATGAAACAATAGATTTAAAAAATCTCTTAAATGTCTCAGCAGGGCATGGTCTGTCACTCCGAAATATGGATTTTACACTTTAAAATGCAATTTTCATACCTTTTTAATTGAAATCCTCTCTTTCACAGGCTAGTGTTGGCATGGACGACCTCAAGGCTTCATGAGAGGCTGGTTATTGCTGAAAATGAAGATGGGACTTCTCCTTTATATTGTGACATCCTCTATGCGCTTATATGATGGCTTATTTGAGATCCATTTGACATCCTTAAATTGAGACATAAATCGTCAGACTTTTAATCTTGTTTTCTTTGATTTGATAATCTTATGTTTCTATTTTGGATGCGCTTTTGTTGTGTGTTGAATCACAACTGGGCTCATCAACATTTTATGTTCTAACGGGAATTTGAATCTTGTAGAATCCTCATTTAATACCTTTAAGTTTGATATTTATATATTGGAAAGTTGATATTATGACCA TTTGATTTTCATTTTGATATATTTTGAATCATACGACAAGGCAACAACATTTAAAAAGAAAAAAAGTTATTATTAAGAAAAAATTGAGATTCTCGTCTGGCGTCGTGAAAACAACACCCCTAAAATTAGAAGAGAGAGAGATTCTCAAAACTTCCGTTACTACTCGAATCCCATTTTTCCCGATATCTTCCTCCTCTCTCCGTTCCTCATCTGTTCAATTCTAATTCCCATTGCTCCGATCACAGTTCTCTCAGCCGCACAAACCACATCCCCAAACCATCTTTTCTTACTCCAAGCATAAAAATGGAGGGAACTGTATTCGCCCCTGCCTTGGAAGGAATTCAGCACGTCAAATCTGAAGCCGGGGAGATTTTGACCAAGCCCTTCTTGGAAGCGTGCAAACATATTCTGCCTGTTATTGACAAGTTTGGAGCTGCTATGGCACTTGTTAAAACTGACATTGGAGGCAACATATCGAGATTGGAGTCCAAGTATTCTAGCAACCCATCTAGGTTCAACTACTTGTATAACTTGGTGAAACCTGAGATTGAAACTAAAACTGCAAAAGGATCATCCAGTTGCACAAATGGTCTTCTTTGGTTGACAAGAGCAATGGATTTCTTGGTAGAATTGTTTCGCAACTTACTGGAGCATCAGGATTGGACAATGTCTCGTGCCTGTACAGAAGCCTATGGCAAGACCTTGAAAAAGTGGCATGGTTGGCTGGCCAGTTCAAGTTTCACTGTTGCCATGAAGCTTGCTCCCGATCGTAAGAAGTTTATGGAAGTTATATCAGGCAATGGCAATGTTGAAGTTGACATAGAGAAATTTTGTACAAGTTTTTCACCTCTCCTCCAAGAGATTCACAAGTTTCTGGCTAGTGTTGGCATGGACGACCTCAAGGCTTCATGAGAGGCTGGTTATTGCTGAAAATGAAGATGGGACTTCTCCTTTATATTGTGACATCCTCTATGCGCTTATATGATGGCTTATTTGAGATCCATTTGACATCCTTAAATTGAGACATAAATCGTCAGACTTTTAATCTTGTTTTCTTTGATTTGATAATCTTATGTTTCTATTTTGGATGCGCTTTTGTTGTGTGTTGAATCACAACTGGGCTCATCAACATTTTATGTTCTAACGGGAATTTGAATCTTGTAGAATCCTCATTTAATACCTTTAAGTTTGATATTTATATATTGGAAAGTTGATATTATGACCA ATGGAGGGAACTGTATTCGCCCCTGCCTTGGAAGGAATTCAGCACGTCAAATCTGAAGCCGGGGAGATTTTGACCAAGCCCTTCTTGGAAGCGTGCAAACATATTCTGCCTGTTATTGACAAGTTTGGAGCTGCTATGGCACTTGTTAAAACTGACATTGGAGGCAACATATCGAGATTGGAGTCCAAGTATTCTAGCAACCCATCTAGGTTCAACTACTTGTATAACTTGGTGAAACCTGAGATTGAAACTAAAACTGCAAAAGGATCATCCAGTTGCACAAATGGTCTTCTTTGGTTGACAAGAGCAATGGATTTCTTGGTAGAATTGTTTCGCAACTTACTGGAGCATCAGGATTGGACAATGTCTCGTGCCTGTACAGAAGCCTATGGCAAGACCTTGAAAAAGTGGCATGGTTGGCTGGCCAGTTCAAGTTTCACTGTTGCCATGAAGCTTGCTCCCGATCGTAAGAAGTTTATGGAAGTTATATCAGGCAATGGCAATGTTGAAGTTGACATAGAGAAATTTTGTACAAGTTTTTCACCTCTCCTCCAAGAGATTCACAAGTTTCTGGCTAGTGTTGGCATGGACGACCTCAAGGCTTCATGA MEGTVFAPALEGIQHVKSEAGEILTKPFLEACKHILPVIDKFGAAMALVKTDIGGNISRLESKYSSNPSRFNYLYNLVKPEIETKTAKGSSSCTNGLLWLTRAMDFLVELFRNLLEHQDWTMSRACTEAYGKTLKKWHGWLASSSFTVAMKLAPDRKKFMEVISGNGNVEVDIEKFCTSFSPLLQEIHKFLASVGMDDLKAS Homology
BLAST of Lsi05G017440 vs. ExPASy Swiss-Prot
Match: O22797 (Glycolipid transfer protein 1 OS=Arabidopsis thaliana OX=3702 GN=GLTP1 PE=2 SV=1) HSP 1 Score: 326.6 bits (836), Expect = 1.9e-88 Identity = 149/202 (73.76%), Postives = 176/202 (87.13%), Query Frame = 0
BLAST of Lsi05G017440 vs. ExPASy Swiss-Prot
Match: Q6NLQ3 (Glycolipid transfer protein 2 OS=Arabidopsis thaliana OX=3702 GN=GLTP2 PE=2 SV=1) HSP 1 Score: 135.2 bits (339), Expect = 8.3e-31 Identity = 72/189 (38.10%), Postives = 102/189 (53.97%), Query Frame = 0
BLAST of Lsi05G017440 vs. ExPASy Swiss-Prot
Match: Q9LU33 (Glycolipid transfer protein 3 OS=Arabidopsis thaliana OX=3702 GN=GLTP3 PE=2 SV=1) HSP 1 Score: 134.8 bits (338), Expect = 1.1e-30 Identity = 71/207 (34.30%), Postives = 113/207 (54.59%), Query Frame = 0
BLAST of Lsi05G017440 vs. ExPASy Swiss-Prot
Match: Q5U3N0 (Pleckstrin homology domain-containing family A member 8 OS=Danio rerio OX=7955 GN=plekha8 PE=2 SV=1) HSP 1 Score: 102.1 bits (253), Expect = 7.8e-21 Identity = 55/149 (36.91%), Postives = 85/149 (57.05%), Query Frame = 0
BLAST of Lsi05G017440 vs. ExPASy Swiss-Prot
Match: D3ZY60 (Pleckstrin homology domain-containing family A member 8 OS=Rattus norvegicus OX=10116 GN=Plekha8 PE=1 SV=1) HSP 1 Score: 99.4 bits (246), Expect = 5.0e-20 Identity = 52/147 (35.37%), Postives = 82/147 (55.78%), Query Frame = 0
BLAST of Lsi05G017440 vs. ExPASy TrEMBL
Match: A0A5A7U4N7 (Glycolipid transfer protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G001770 PE=4 SV=1) HSP 1 Score: 400.6 bits (1028), Expect = 3.9e-108 Identity = 193/202 (95.54%), Postives = 198/202 (98.02%), Query Frame = 0
BLAST of Lsi05G017440 vs. ExPASy TrEMBL
Match: A0A1S3AX59 (glycolipid transfer protein 1 OS=Cucumis melo OX=3656 GN=LOC103483577 PE=4 SV=1) HSP 1 Score: 400.6 bits (1028), Expect = 3.9e-108 Identity = 193/202 (95.54%), Postives = 198/202 (98.02%), Query Frame = 0
BLAST of Lsi05G017440 vs. ExPASy TrEMBL
Match: A0A0A0L888 (GLTP domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G134900 PE=4 SV=1) HSP 1 Score: 394.8 bits (1013), Expect = 2.1e-106 Identity = 190/202 (94.06%), Postives = 196/202 (97.03%), Query Frame = 0
BLAST of Lsi05G017440 vs. ExPASy TrEMBL
Match: A0A6J1ISS0 (glycolipid transfer protein 1 OS=Cucurbita maxima OX=3661 GN=LOC111479622 PE=4 SV=1) HSP 1 Score: 391.0 bits (1003), Expect = 3.1e-105 Identity = 187/202 (92.57%), Postives = 197/202 (97.52%), Query Frame = 0
BLAST of Lsi05G017440 vs. ExPASy TrEMBL
Match: A0A6J1EA66 (glycolipid transfer protein 1 OS=Cucurbita moschata OX=3662 GN=LOC111432176 PE=4 SV=1) HSP 1 Score: 389.0 bits (998), Expect = 1.2e-104 Identity = 186/202 (92.08%), Postives = 197/202 (97.52%), Query Frame = 0
BLAST of Lsi05G017440 vs. NCBI nr
Match: XP_008438498.1 (PREDICTED: glycolipid transfer protein 1 [Cucumis melo]) HSP 1 Score: 400.6 bits (1028), Expect = 8.1e-108 Identity = 193/202 (95.54%), Postives = 198/202 (98.02%), Query Frame = 0
BLAST of Lsi05G017440 vs. NCBI nr
Match: KAA0049236.1 (glycolipid transfer protein 1 [Cucumis melo var. makuwa] >TYK17322.1 glycolipid transfer protein 1 [Cucumis melo var. makuwa]) HSP 1 Score: 400.6 bits (1028), Expect = 8.1e-108 Identity = 193/202 (95.54%), Postives = 198/202 (98.02%), Query Frame = 0
BLAST of Lsi05G017440 vs. NCBI nr
Match: XP_011650924.1 (glycolipid transfer protein 1 [Cucumis sativus] >XP_031739441.1 glycolipid transfer protein 1 [Cucumis sativus] >KGN56842.1 hypothetical protein Csa_010945 [Cucumis sativus]) HSP 1 Score: 394.8 bits (1013), Expect = 4.4e-106 Identity = 190/202 (94.06%), Postives = 196/202 (97.03%), Query Frame = 0
BLAST of Lsi05G017440 vs. NCBI nr
Match: XP_038878235.1 (glycolipid transfer protein 1 [Benincasa hispida]) HSP 1 Score: 392.9 bits (1008), Expect = 1.7e-105 Identity = 190/202 (94.06%), Postives = 196/202 (97.03%), Query Frame = 0
BLAST of Lsi05G017440 vs. NCBI nr
Match: KAG6582394.1 (Glycolipid transfer protein 1, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 391.0 bits (1003), Expect = 6.4e-105 Identity = 187/202 (92.57%), Postives = 197/202 (97.52%), Query Frame = 0
BLAST of Lsi05G017440 vs. TAIR 10
Match: AT2G33470.1 (glycolipid transfer protein 1 ) HSP 1 Score: 326.6 bits (836), Expect = 1.4e-89 Identity = 149/202 (73.76%), Postives = 176/202 (87.13%), Query Frame = 0
BLAST of Lsi05G017440 vs. TAIR 10
Match: AT2G33470.2 (glycolipid transfer protein 1 ) HSP 1 Score: 326.6 bits (836), Expect = 1.4e-89 Identity = 149/202 (73.76%), Postives = 176/202 (87.13%), Query Frame = 0
BLAST of Lsi05G017440 vs. TAIR 10
Match: AT1G21360.1 (glycolipid transfer protein 2 ) HSP 1 Score: 135.2 bits (339), Expect = 5.9e-32 Identity = 72/189 (38.10%), Postives = 102/189 (53.97%), Query Frame = 0
BLAST of Lsi05G017440 vs. TAIR 10
Match: AT3G21260.3 (Glycolipid transfer protein (GLTP) family protein ) HSP 1 Score: 134.8 bits (338), Expect = 7.7e-32 Identity = 71/207 (34.30%), Postives = 113/207 (54.59%), Query Frame = 0
BLAST of Lsi05G017440 vs. TAIR 10
Match: AT3G21260.2 (Glycolipid transfer protein (GLTP) family protein ) HSP 1 Score: 104.4 bits (259), Expect = 1.1e-22 Identity = 49/147 (33.33%), Postives = 82/147 (55.78%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|