Lsi05G016710 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi05G016710
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	40S ribosomal protein S15
Location	chr05: 24325771 .. 24327693 (-)
RNA-Seq Expression	Lsi05G016710
Synteny	Lsi05G016710

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCAGAGTTTATATATGATCTTAATCGACAATTTCATTCCACTCGAAACCCTAGCAGCCAGAATCGTCATTTGCACTCAGCCTACGGCTTCTTCTGATTTCTGAACTCCAACCATGGTAAGGCTCAAAGACTTCTCCGCATTCTGTATTGAAGTGTGTGTACTCCATCTGACCTAATTTTCATGTTCATAGGCGGACGATAATCCCGATGTGGCGGCGGCGGCGGCCGGAGTGCCGAAGAAGAGGACTTTCAAGAAGTTCAGTTTTCGTGGAGTCGATTTGGATGCTCTCCTCGACATGTCCACCGATGAGCTTGTCAAGCTCTTCACTGCCAGGGCTCGCAGAAGGTAGGTCAAATGATATATGGTAATCTTGTGGAATGATTTAATTTGCTGTTTTTGACGCTTCTTTCGATCTTCTGTTTCAGGTTCCGGAGGGGTCTGACAAGGAAGCCAATGGCTCTGATCAAGAAGCTACGCAAAGCGGTAATTGCAACACTTCTTATTTTTGTTCCATTTTGTAACTGCAAAAATAAATTTCAACTTTTGCTTTTTTGGAAATCTAATTCCGGTTTATGTCATTTCTTCGCCAACGTTGGTACGTGCATGTCTATTTGGTTATGAGTGTACTAAATAGAAGAATAGAGCTCCACATTAACAAGTTTACTATTAGGAAATCCGTAGGTTGTATGGTTTTATTGGTTGATAGTCAGAAATTTGGTGTGTTTCCTTTAACTCCTTTTAGCTGCCGTGTAATATGAAGGCTGTCTTTTGATTACCCCCGTAAAACGGGATAACTTAGATAGATTAACGCATTGAATATCCTAACGCATCGACTTTGTGAAAATGTGGTGTTTTAGTATGATCGGTTGCCTCAGATATTATACAAGCACAGGGTTCGCTTGAAATTCCCATTAGTTGAGCAGTTCTCTTGTTCATTAATTGAATTTTGAATTAGTGGTGATATAAAATGAAAATCTCCTACATCATTCTTGATGATTCAAGAATCTGACTCTAGTATAAACTAAATCACCACCAATCATGACTAATTTGCTTCTTTCCCCATTGGCTTCTGCATTCAGATGAAATTCTTTTTCCTGTCTTCTACAGTCAAATGTTACTACTGCTTACTGATGAGTTTTCATGGGCTGATGACTTGGAGAACGTAATATCAATCTCACATGTATTTGCCTCTTAACTCTACAGAAACGCGAGGCACCACCGGGTGAGAAGCCAGAGCCCGTTAGAACTCACCTTCGCAATATGATCATAGTACCTGAAATGATTGGAAGTATCATTGGAGTTTACAATGGAAAGACCTTTAATCAGGTTGAAATCAAGCCTGAGATGATTGGCCATTACCTAGCTGAGTTTTCTATATCGTACAAGCCTGTCAAGCATGGTAGACCTGGTATTGGTGCCACTCACTCATCGAGGTTCATTCCTCTCAAGTGAGAAGAGAATACCATTTGTCAGTCTTGGAGTATACTCTGCTTTTCTTCAAGTTTTATGGATATTTATTTATTTTTCTTTATTAGTCTATTTCTGACTACTTTTTGACTGGAATTTAATTTCTATCAACAATGGAAGATAATTTTGATGGTTGAGACGCAGGTTCTTCGTTTTCCTTTTCCATCTAAAAGTTAAAGCAAGACATCTAGTTGTTTTGTCTAAGAATGCTTAAGCGATCAGTGGGATGCGTTTGTGTATGTTCCTTTAAGGTTCTCTGTTTTCGATTGTTTTGAGTTGCCTTGTTTATTTGACTGGAGGATGCTTTCTAGTACTATATGTTCACTTATGTTTATAGGCACAAAGTAGTCAATAGGAGATTGATATATTGGGCTTGAAATCGAAAAATACTTGATTGTATTTGTATACAAATTGTCTTTGGGTTAAATAACGATCTTTGGAGGGTTTCTTTTCAA

mRNA sequence

TTCAGAGTTTATATATGATCTTAATCGACAATTTCATTCCACTCGAAACCCTAGCAGCCAGAATCGTCATTTGCACTCAGCCTACGGCTTCTTCTGATTTCTGAACTCCAACCATGGCGGACGATAATCCCGATGTGGCGGCGGCGGCGGCCGGAGTGCCGAAGAAGAGGACTTTCAAGAAGTTCAGTTTTCGTGGAGTCGATTTGGATGCTCTCCTCGACATGTCCACCGATGAGCTTGTCAAGCTCTTCACTGCCAGGGCTCGCAGAAGGTTCCGGAGGGGTCTGACAAGGAAGCCAATGGCTCTGATCAAGAAGCTACGCAAAGCGAAACGCGAGGCACCACCGGGTGAGAAGCCAGAGCCCGTTAGAACTCACCTTCGCAATATGATCATAGTACCTGAAATGATTGGAAGTATCATTGGAGTTTACAATGGAAAGACCTTTAATCAGGTTGAAATCAAGCCTGAGATGATTGGCCATTACCTAGCTGAGTTTTCTATATCGTACAAGCCTGTCAAGCATGGTAGACCTGGTATTGGTGCCACTCACTCATCGAGGTTCATTCCTCTCAAGTGAGAAGAGAATACCATTTGTCAGTCTTGGAGTATACTCTGCTTTTCTTCAAGTTTTATGGATATTTATTTATTTTTCTTTATTAGTCTATTTCTGACTACTTTTTGACTGGAATTTAATTTCTATCAACAATGGAAGATAATTTTGATGGTTGAGACGCAGGTTCTTCGTTTTCCTTTTCCATCTAAAAGTTAAAGCAAGACATCTAGTTGTTTTGTCTAAGAATGCTTAAGCGATCAGTGGGATGCGTTTGTGTATGTTCCTTTAAGGTTCTCTGTTTTCGATTGTTTTGAGTTGCCTTGTTTATTTGACTGGAGGATGCTTTCTAGTACTATATGTTCACTTATGTTTATAGGCACAAAGTAGTCAATAGGAGATTGATATATTGGGCTTGAAATCGAAAAATACTTGATTGTATTTGTATACAAATTGTCTTTGGGTTAAATAACGATCTTTGGAGGGTTTCTTTTCAA

Coding sequence (CDS)

ATGGCGGACGATAATCCCGATGTGGCGGCGGCGGCGGCCGGAGTGCCGAAGAAGAGGACTTTCAAGAAGTTCAGTTTTCGTGGAGTCGATTTGGATGCTCTCCTCGACATGTCCACCGATGAGCTTGTCAAGCTCTTCACTGCCAGGGCTCGCAGAAGGTTCCGGAGGGGTCTGACAAGGAAGCCAATGGCTCTGATCAAGAAGCTACGCAAAGCGAAACGCGAGGCACCACCGGGTGAGAAGCCAGAGCCCGTTAGAACTCACCTTCGCAATATGATCATAGTACCTGAAATGATTGGAAGTATCATTGGAGTTTACAATGGAAAGACCTTTAATCAGGTTGAAATCAAGCCTGAGATGATTGGCCATTACCTAGCTGAGTTTTCTATATCGTACAAGCCTGTCAAGCATGGTAGACCTGGTATTGGTGCCACTCACTCATCGAGGTTCATTCCTCTCAAGTGA

Protein sequence

MADDNPDVAAAAAGVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK

Homology

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BLAST of Lsi05G016710 vs. ExPASy Swiss-Prot
Match: Q08112 (40S ribosomal protein S15-1 OS=Arabidopsis thaliana OX=3702 GN=RPS15A PE=2 SV=1)

HSP 1 Score: 278.5 bits (711), Expect = 4.6e-74
Identity = 140/154 (90.91%), Postives = 147/154 (95.45%), Query Frame = 0


Query: 1   MADDNPDVAAAAAGVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTR 60
           MAD  P+V  AAAGVPKKRTFKKF+F+GVDLDALLDMSTD+LVKLF++R RRRF RGLTR
Sbjct: 1   MADVEPEV--AAAGVPKKRTFKKFAFKGVDLDALLDMSTDDLVKLFSSRIRRRFSRGLTR 60

Query: 61  KPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEM 120
           KPMALIKKLRKAKREAP GEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEM
Sbjct: 61  KPMALIKKLRKAKREAPQGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEM 120

Query: 121 IGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 155
           IGHYLAEFSISYKPVKHGRPG+GATHSSRFIPLK
Sbjct: 121 IGHYLAEFSISYKPVKHGRPGVGATHSSRFIPLK 152

[Close]

BLAST of Lsi05G016710 vs. ExPASy Swiss-Prot
Match: Q9FY64 (40S ribosomal protein S15-4 OS=Arabidopsis thaliana OX=3702 GN=RPS15D PE=2 SV=1)

HSP 1 Score: 278.5 bits (711), Expect = 4.6e-74
Identity = 140/154 (90.91%), Postives = 147/154 (95.45%), Query Frame = 0


Query: 1   MADDNPDVAAAAAGVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTR 60
           MAD  P+V  AAAGVPKKRTFKKF+F+GVDLDALLDMSTD+LVKLF++R RRRF RGLTR
Sbjct: 1   MADVEPEV--AAAGVPKKRTFKKFAFKGVDLDALLDMSTDDLVKLFSSRIRRRFSRGLTR 60

Query: 61  KPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEM 120
           KPMALIKKLRKAKREAP GEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEM
Sbjct: 61  KPMALIKKLRKAKREAPAGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEM 120

Query: 121 IGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 155
           IGHYLAEFSISYKPVKHGRPG+GATHSSRFIPLK
Sbjct: 121 IGHYLAEFSISYKPVKHGRPGVGATHSSRFIPLK 152

[Close]

BLAST of Lsi05G016710 vs. ExPASy Swiss-Prot
Match: P31674 (40S ribosomal protein S15 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS15 PE=2 SV=2)

HSP 1 Score: 267.3 bits (682), Expect = 1.1e-70
Identity = 132/154 (85.71%), Postives = 142/154 (92.21%), Query Frame = 0


Query: 1   MADDNPDVAAAAAGVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTR 60
           MAD   +   AA   PKKRTF+K+S+RGVDLDALLDMSTD+LV+LF ARARRRF+RGL R
Sbjct: 1   MADVEVETEVAAGAQPKKRTFRKYSYRGVDLDALLDMSTDDLVQLFPARARRRFQRGLKR 60

Query: 61  KPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEM 120
           KPMALIKKLRKAK++AP GEKPEPVRTHLRNMIIVPEMIGSI+GVYNGKTFNQVEIKPEM
Sbjct: 61  KPMALIKKLRKAKKDAPAGEKPEPVRTHLRNMIIVPEMIGSIVGVYNGKTFNQVEIKPEM 120

Query: 121 IGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 155
           IGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 121 IGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 154

[Close]

BLAST of Lsi05G016710 vs. ExPASy Swiss-Prot
Match: Q945U1 (40S ribosomal protein S15 OS=Elaeis oleifera OX=80265 GN=RPS15 PE=2 SV=1)

HSP 1 Score: 266.9 bits (681), Expect = 1.4e-70
Identity = 133/151 (88.08%), Postives = 137/151 (90.73%), Query Frame = 0


Query: 4   DNPDVAAAAAGVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRKPM 63
           D  D        PKKRTF+KFS+RGVDLD LLDM TDELVKLF ARARRRF+RGL RKPM
Sbjct: 3   DVSDAVDVGGAQPKKRTFRKFSYRGVDLDQLLDMGTDELVKLFHARARRRFQRGLKRKPM 62

Query: 64  ALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGH 123
           ALIKKLRKAKR+APPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGH
Sbjct: 63  ALIKKLRKAKRDAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGH 122

Query: 124 YLAEFSISYKPVKHGRPGIGATHSSRFIPLK 155
           YLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 123 YLAEFSISYKPVKHGRPGIGATHSSRFIPLK 153

[Close]

BLAST of Lsi05G016710 vs. ExPASy Swiss-Prot
Match: O65059 (40S ribosomal protein S15 OS=Picea mariana OX=3335 GN=RPS15 PE=2 SV=1)

HSP 1 Score: 264.6 bits (675), Expect = 6.9e-70
Identity = 135/154 (87.66%), Postives = 142/154 (92.21%), Query Frame = 0


Query: 1   MADDNPDVAAAAAGVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTR 60
           MAD + DV       PKKRTFKKFS+RGVDLDALLDM+++ELVKLF ARARRRF+RGL R
Sbjct: 1   MADADVDVGPVQ---PKKRTFKKFSYRGVDLDALLDMTSEELVKLFHARARRRFQRGLKR 60

Query: 61  KPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEM 120
           +PMALIKKLRKAKREAP GEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEM
Sbjct: 61  QPMALIKKLRKAKREAPSGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEM 120

Query: 121 IGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 155
           IGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 121 IGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 151

[Close]

BLAST of Lsi05G016710 vs. ExPASy TrEMBL
Match: A0A5D3CZY1 (40S ribosomal protein S15-4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G001090 PE=3 SV=1)

HSP 1 Score: 301.2 bits (770), Expect = 2.5e-78
Identity = 153/154 (99.35%), Postives = 153/154 (99.35%), Query Frame = 0


Query: 1   MADDNPDVAAAAAGVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTR 60
           MADDNPDV AAAAGVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTR
Sbjct: 1   MADDNPDV-AAAAGVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTR 60

Query: 61  KPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEM 120
           KPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEM
Sbjct: 61  KPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEM 120

Query: 121 IGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 155
           IGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 121 IGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 153

[Close]

BLAST of Lsi05G016710 vs. ExPASy TrEMBL
Match: A0A1S3AWD7 (40S ribosomal protein S15-4 OS=Cucumis melo OX=3656 GN=LOC103483644 PE=3 SV=1)

HSP 1 Score: 301.2 bits (770), Expect = 2.5e-78
Identity = 153/154 (99.35%), Postives = 153/154 (99.35%), Query Frame = 0


Query: 1   MADDNPDVAAAAAGVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTR 60
           MADDNPDV AAAAGVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTR
Sbjct: 1   MADDNPDV-AAAAGVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTR 60

Query: 61  KPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEM 120
           KPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEM
Sbjct: 61  KPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEM 120

Query: 121 IGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 155
           IGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 121 IGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 153

[Close]

BLAST of Lsi05G016710 vs. ExPASy TrEMBL
Match: A0A6J1IA94 (40S ribosomal protein S15-4-like OS=Cucurbita maxima OX=3661 GN=LOC111473108 PE=3 SV=1)

HSP 1 Score: 299.7 bits (766), Expect = 7.1e-78
Identity = 152/154 (98.70%), Postives = 152/154 (98.70%), Query Frame = 0


Query: 1   MADDNPDVAAAAAGVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTR 60
           MADDNPDV AAA GVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTR
Sbjct: 1   MADDNPDV-AAAGGVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTR 60

Query: 61  KPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEM 120
           KPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEM
Sbjct: 61  KPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEM 120

Query: 121 IGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 155
           IGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 121 IGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 153

[Close]

BLAST of Lsi05G016710 vs. ExPASy TrEMBL
Match: A0A6J1F4T6 (40S ribosomal protein S15-4-like OS=Cucurbita moschata OX=3662 GN=LOC111442119 PE=3 SV=1)

HSP 1 Score: 299.7 bits (766), Expect = 7.1e-78
Identity = 152/154 (98.70%), Postives = 152/154 (98.70%), Query Frame = 0


Query: 1   MADDNPDVAAAAAGVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTR 60
           MADDNPDV AAA GVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTR
Sbjct: 1   MADDNPDV-AAAGGVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTR 60

Query: 61  KPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEM 120
           KPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEM
Sbjct: 61  KPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEM 120

Query: 121 IGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 155
           IGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 121 IGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 153

[Close]

BLAST of Lsi05G016710 vs. ExPASy TrEMBL
Match: A0A6J1D2K1 (40S ribosomal protein S15-4 OS=Momordica charantia OX=3673 GN=LOC111016408 PE=3 SV=1)

HSP 1 Score: 299.3 bits (765), Expect = 9.3e-78
Identity = 151/154 (98.05%), Postives = 152/154 (98.70%), Query Frame = 0


Query: 1   MADDNPDVAAAAAGVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTR 60
           MADDNPDV  AAAGVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTR
Sbjct: 1   MADDNPDV--AAAGVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTR 60

Query: 61  KPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEM 120
           KPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSI+GVYNGKTFNQVEIKPEM
Sbjct: 61  KPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIVGVYNGKTFNQVEIKPEM 120

Query: 121 IGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 155
           IGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 121 IGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 152

[Close]

BLAST of Lsi05G016710 vs. NCBI nr
Match: XP_004134098.1 (40S ribosomal protein S15-4 [Cucumis sativus] >KAE8650344.1 hypothetical protein Csa_011147 [Cucumis sativus])

HSP 1 Score: 307.4 bits (786), Expect = 7.1e-80
Identity = 154/154 (100.00%), Postives = 154/154 (100.00%), Query Frame = 0


Query: 1   MADDNPDVAAAAAGVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTR 60
           MADDNPDVAAAAAGVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTR
Sbjct: 1   MADDNPDVAAAAAGVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTR 60

Query: 61  KPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEM 120
           KPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEM
Sbjct: 61  KPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEM 120

Query: 121 IGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 155
           IGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 121 IGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 154

[Close]

BLAST of Lsi05G016710 vs. NCBI nr
Match: XP_008438580.1 (PREDICTED: 40S ribosomal protein S15-4 [Cucumis melo] >KAA0049301.1 40S ribosomal protein S15-4 [Cucumis melo var. makuwa] >TYK17257.1 40S ribosomal protein S15-4 [Cucumis melo var. makuwa])

HSP 1 Score: 301.2 bits (770), Expect = 5.1e-78
Identity = 153/154 (99.35%), Postives = 153/154 (99.35%), Query Frame = 0


Query: 1   MADDNPDVAAAAAGVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTR 60
           MADDNPDV AAAAGVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTR
Sbjct: 1   MADDNPDV-AAAAGVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTR 60

Query: 61  KPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEM 120
           KPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEM
Sbjct: 61  KPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEM 120

Query: 121 IGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 155
           IGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 121 IGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 153

[Close]

BLAST of Lsi05G016710 vs. NCBI nr
Match: XP_022935167.1 (40S ribosomal protein S15-4-like [Cucurbita moschata] >XP_022974447.1 40S ribosomal protein S15-4-like [Cucurbita maxima] >XP_023538650.1 40S ribosomal protein S15-4-like [Cucurbita pepo subsp. pepo] >KAG6597390.1 40S ribosomal protein S15, partial [Cucurbita argyrosperma subsp. sororia] >KAG7028852.1 40S ribosomal protein S15 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 299.7 bits (766), Expect = 1.5e-77
Identity = 152/154 (98.70%), Postives = 152/154 (98.70%), Query Frame = 0


Query: 1   MADDNPDVAAAAAGVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTR 60
           MADDNPDV AAA GVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTR
Sbjct: 1   MADDNPDV-AAAGGVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTR 60

Query: 61  KPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEM 120
           KPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEM
Sbjct: 61  KPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEM 120

Query: 121 IGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 155
           IGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 121 IGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 153

[Close]

BLAST of Lsi05G016710 vs. NCBI nr
Match: XP_038877091.1 (40S ribosomal protein S15-4 [Benincasa hispida])

HSP 1 Score: 299.7 bits (766), Expect = 1.5e-77
Identity = 152/154 (98.70%), Postives = 152/154 (98.70%), Query Frame = 0


Query: 1   MADDNPDVAAAAAGVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTR 60
           MADDNPDV  AAAGVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTR
Sbjct: 1   MADDNPDV--AAAGVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTR 60

Query: 61  KPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEM 120
           KPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEM
Sbjct: 61  KPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEM 120

Query: 121 IGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 155
           IGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 121 IGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 152

[Close]

BLAST of Lsi05G016710 vs. NCBI nr
Match: XP_022147501.1 (40S ribosomal protein S15-4 [Momordica charantia])

HSP 1 Score: 299.3 bits (765), Expect = 1.9e-77
Identity = 151/154 (98.05%), Postives = 152/154 (98.70%), Query Frame = 0


Query: 1   MADDNPDVAAAAAGVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTR 60
           MADDNPDV  AAAGVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTR
Sbjct: 1   MADDNPDV--AAAGVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTR 60

Query: 61  KPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEM 120
           KPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSI+GVYNGKTFNQVEIKPEM
Sbjct: 61  KPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIVGVYNGKTFNQVEIKPEM 120

Query: 121 IGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 155
           IGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 121 IGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 152

[Close]

BLAST of Lsi05G016710 vs. TAIR 10
Match: AT1G04270.1 (cytosolic ribosomal protein S15 )

HSP 1 Score: 278.5 bits (711), Expect = 3.3e-75
Identity = 140/154 (90.91%), Postives = 147/154 (95.45%), Query Frame = 0


Query: 1   MADDNPDVAAAAAGVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTR 60
           MAD  P+V  AAAGVPKKRTFKKF+F+GVDLDALLDMSTD+LVKLF++R RRRF RGLTR
Sbjct: 1   MADVEPEV--AAAGVPKKRTFKKFAFKGVDLDALLDMSTDDLVKLFSSRIRRRFSRGLTR 60

Query: 61  KPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEM 120
           KPMALIKKLRKAKREAP GEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEM
Sbjct: 61  KPMALIKKLRKAKREAPQGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEM 120

Query: 121 IGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 155
           IGHYLAEFSISYKPVKHGRPG+GATHSSRFIPLK
Sbjct: 121 IGHYLAEFSISYKPVKHGRPGVGATHSSRFIPLK 152

[Close]

BLAST of Lsi05G016710 vs. TAIR 10
Match: AT5G09510.1 (Ribosomal protein S19 family protein )

HSP 1 Score: 278.5 bits (711), Expect = 3.3e-75
Identity = 140/154 (90.91%), Postives = 147/154 (95.45%), Query Frame = 0


Query: 1   MADDNPDVAAAAAGVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTR 60
           MAD  P+V  AAAGVPKKRTFKKF+F+GVDLDALLDMSTD+LVKLF++R RRRF RGLTR
Sbjct: 1   MADVEPEV--AAAGVPKKRTFKKFAFKGVDLDALLDMSTDDLVKLFSSRIRRRFSRGLTR 60

Query: 61  KPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEM 120
           KPMALIKKLRKAKREAP GEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEM
Sbjct: 61  KPMALIKKLRKAKREAPAGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEM 120

Query: 121 IGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 155
           IGHYLAEFSISYKPVKHGRPG+GATHSSRFIPLK
Sbjct: 121 IGHYLAEFSISYKPVKHGRPGVGATHSSRFIPLK 152

[Close]

BLAST of Lsi05G016710 vs. TAIR 10
Match: AT1G04270.2 (cytosolic ribosomal protein S15 )

HSP 1 Score: 271.9 bits (694), Expect = 3.1e-73
Identity = 139/154 (90.26%), Postives = 146/154 (94.81%), Query Frame = 0


Query: 1   MADDNPDVAAAAAGVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTR 60
           MAD  P+V  AAAGVPKKRTFKKF+F+GVDLDALLDMSTD+LVKLF++R RRRF RGLTR
Sbjct: 1   MADVEPEV--AAAGVPKKRTFKKFAFKGVDLDALLDMSTDDLVKLFSSRIRRRFSRGLTR 60

Query: 61  KPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEM 120
           KPMALIKKLRK KREAP GEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEM
Sbjct: 61  KPMALIKKLRK-KREAPQGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEM 120

Query: 121 IGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 155
           IGHYLAEFSISYKPVKHGRPG+GATHSSRFIPLK
Sbjct: 121 IGHYLAEFSISYKPVKHGRPGVGATHSSRFIPLK 151

[Close]

BLAST of Lsi05G016710 vs. TAIR 10
Match: AT5G09500.1 (Ribosomal protein S19 family protein )

HSP 1 Score: 260.8 bits (665), Expect = 7.1e-70
Identity = 131/148 (88.51%), Postives = 137/148 (92.57%), Query Frame = 0


Query: 7   DVAAAAAGVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRKPMALI 66
           D   AAAG+ KKRTFKKFSFRGVDLDALLDMSTD+LVKLF +R RRRF RGLTRKPMALI
Sbjct: 3   DPEVAAAGIVKKRTFKKFSFRGVDLDALLDMSTDDLVKLFPSRIRRRFSRGLTRKPMALI 62

Query: 67  KKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLA 126
           KKLRKAK EAP GEKP  VRTHLRNMIIVPEMIGS+IGVYNGKTFNQVEIKPEMIGHYLA
Sbjct: 63  KKLRKAKIEAPAGEKPAAVRTHLRNMIIVPEMIGSVIGVYNGKTFNQVEIKPEMIGHYLA 122

Query: 127 EFSISYKPVKHGRPGIGATHSSRFIPLK 155
           EFSISYKPVKHGRPG+GAT+SSRFIPLK
Sbjct: 123 EFSISYKPVKHGRPGVGATNSSRFIPLK 150

[Close]

BLAST of Lsi05G016710 vs. TAIR 10
Match: AT5G43640.1 (Ribosomal protein S19 family protein )

HSP 1 Score: 253.8 bits (647), Expect = 8.7e-68
Identity = 127/143 (88.81%), Postives = 134/143 (93.71%), Query Frame = 0


Query: 12  AAGVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRKPMALIKKLRK 71
           AAG+ KKRTFKKFSFRGVDLDALLDMS ++LVK F++R RRRF RGLTRKPMALIKKLRK
Sbjct: 7   AAGIVKKRTFKKFSFRGVDLDALLDMSIEDLVKHFSSRIRRRFSRGLTRKPMALIKKLRK 66

Query: 72  AKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSIS 131
           AK EAP GEKP  VRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSIS
Sbjct: 67  AKMEAPAGEKPASVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSIS 126

Query: 132 YKPVKHGRPGIGATHSSRFIPLK 155
           YKPVKHGRPG+GAT+SSRFIPLK
Sbjct: 127 YKPVKHGRPGVGATNSSRFIPLK 149

The following BLAST results are available for this feature:

BLAST of Lsi05G016710 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q08112	4.6e-74	90.91	40S ribosomal protein S15-1 OS=Arabidopsis thaliana OX=3702 GN=RPS15A PE=2 SV=1	[more]
Q9FY64	4.6e-74	90.91	40S ribosomal protein S15-4 OS=Arabidopsis thaliana OX=3702 GN=RPS15D PE=2 SV=1	[more]
P31674	1.1e-70	85.71	40S ribosomal protein S15 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS15 PE=2...	[more]
Q945U1	1.4e-70	88.08	40S ribosomal protein S15 OS=Elaeis oleifera OX=80265 GN=RPS15 PE=2 SV=1	[more]
O65059	6.9e-70	87.66	40S ribosomal protein S15 OS=Picea mariana OX=3335 GN=RPS15 PE=2 SV=1	[more]

BLAST of Lsi05G016710 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CZY1	2.5e-78	99.35	40S ribosomal protein S15-4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A1S3AWD7	2.5e-78	99.35	40S ribosomal protein S15-4 OS=Cucumis melo OX=3656 GN=LOC103483644 PE=3 SV=1	[more]
A0A6J1IA94	7.1e-78	98.70	40S ribosomal protein S15-4-like OS=Cucurbita maxima OX=3661 GN=LOC111473108 PE=...	[more]
A0A6J1F4T6	7.1e-78	98.70	40S ribosomal protein S15-4-like OS=Cucurbita moschata OX=3662 GN=LOC111442119 P...	[more]
A0A6J1D2K1	9.3e-78	98.05	40S ribosomal protein S15-4 OS=Momordica charantia OX=3673 GN=LOC111016408 PE=3 ...	[more]

BLAST of Lsi05G016710 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004134098.1	7.1e-80	100.00	40S ribosomal protein S15-4 [Cucumis sativus] >KAE8650344.1 hypothetical protein...	[more]
XP_008438580.1	5.1e-78	99.35	PREDICTED: 40S ribosomal protein S15-4 [Cucumis melo] >KAA0049301.1 40S ribosoma...	[more]
XP_022935167.1	1.5e-77	98.70	40S ribosomal protein S15-4-like [Cucurbita moschata] >XP_022974447.1 40S riboso...	[more]
XP_038877091.1	1.5e-77	98.70	40S ribosomal protein S15-4 [Benincasa hispida]	[more]
XP_022147501.1	1.9e-77	98.05	40S ribosomal protein S15-4 [Momordica charantia]	[more]

BLAST of Lsi05G016710 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G04270.1	3.3e-75	90.91	cytosolic ribosomal protein S15	[more]
AT5G09510.1	3.3e-75	90.91	Ribosomal protein S19 family protein	[more]
AT1G04270.2	3.1e-73	90.26	cytosolic ribosomal protein S15	[more]
AT5G09500.1	7.1e-70	88.51	Ribosomal protein S19 family protein	[more]
AT5G43640.1	8.7e-68	88.81	Ribosomal protein S19 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002222	Ribosomal protein S19/S15	PRINTS	PR00975	RIBOSOMALS19	coord: 107..119 score: 42.93 coord: 87..106 score: 46.13 coord: 119..134 score: 46.98
IPR002222	Ribosomal protein S19/S15	PIRSF	PIRSF002144	RPS19p_RPS19a_RPS15e_RPS19o	coord: 11..154 e-value: 2.6E-38 score: 127.4
IPR002222	Ribosomal protein S19/S15	PFAM	PF00203	Ribosomal_S19	coord: 52..137 e-value: 1.8E-33 score: 114.3
IPR002222	Ribosomal protein S19/S15	PANTHER	PTHR11880	RIBOSOMAL PROTEIN S19P FAMILY MEMBER	coord: 9..154
IPR002222	Ribosomal protein S19/S15	HAMAP	MF_00531	Ribosomal_S19	coord: 50..143 score: 21.249146
IPR023575	Ribosomal protein S19/S15, superfamily	GENE3D	3.30.860.10	30s Ribosomal Protein S19; Chain A	coord: 11..154 e-value: 1.3E-72 score: 244.0
IPR023575	Ribosomal protein S19/S15, superfamily	SUPERFAMILY	54570	Ribosomal protein S19	coord: 57..138
IPR005713	Ribosomal protein S19A/S15e	TIGRFAM	TIGR01025	TIGR01025	coord: 21..154 e-value: 5.0E-71 score: 234.8
None	No IPR available	PANTHER	PTHR11880:SF41	BNAA03G55820D PROTEIN	coord: 9..154
IPR020934	Ribosomal protein S19 conserved site	PROSITE	PS00323	RIBOSOMAL_S19	coord: 107..131

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi05G016710.1	Lsi05G016710.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000028	ribosomal small subunit assembly
biological_process	GO:0006412	translation
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0005840	ribosome
cellular_component	GO:0015935	small ribosomal subunit
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome