Lsi05G016620 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi05G016620
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Auxin-responsive protein
Location	chr05: 24285060 .. 24285798 (-)
RNA-Seq Expression	Lsi05G016620
Synteny	Lsi05G016620

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTTCAAAAAAAAAAAAAAAGGAAAAAAAAAACCTTTTGCTTTTAAGCCTTGTCTATAAAAATACAACCACTTCCCACCTCCCCTTCCACCAAATCATTCCATTCCCTTGAAAGAAAAAAAAAGGACTCAAACTTTAACCCAAAATTTGCAACAATGGCGTTTGAAAATGGGTTAAACCTCGATGCGACGGAGCTCCGCCTTGGACCGCCCGGCGTCGACGACAATAAATTACAAGAACAACCTCAGTCTCTCAGAATTATCAGCAACAACAACAACAAAAGACCATTATTATTACCAGAATCTAACCAAAGCTCCTCTGGATCAAATATCACCGTTTCCTCTGATGCCACTCTTGAAACCCCACCTCCTTCCAAGTATGTTTAACAAAAAATTACAATTTTTTTTTTTATTTACTTGTAATTATTAATAATTAATTAGATTATTGGTTATTAATTTTATCATTTTGGGTATGTGATGTAGGGCTCAGATTGTGGGATGGCCACCGGTTCAGTCATTTAGAAGGAACAGCCTTCAAGGGAAGAAGACGACGGCGGCAACGGCGGTGCCGGAGATTAGTGGAAATTATGTAAAAGTAAGCATGGATGGAGCTCCTTACTTGAGAAAAATTGATGTCAGTTTATACAAAGGCTACCCTGAACTTCTCCAAACTTTAGAAGACATGTTCAAATTCACCGTAGGTATGTATTATATTTTTAAGTAATTTTCCAACATAAAGTT

mRNA sequence

TTTTCAAAAAAAAAAAAAAAGGAAAAAAAAAACCTTTTGCTTTTAAGCCTTGTCTATAAAAATACAACCACTTCCCACCTCCCCTTCCACCAAATCATTCCATTCCCTTGAAAGAAAAAAAAAGGACTCAAACTTTAACCCAAAATTTGCAACAATGGCGTTTGAAAATGGGTTAAACCTCGATGCGACGGAGCTCCGCCTTGGACCGCCCGGCGTCGACGACAATAAATTACAAGAACAACCTCAGTCTCTCAGAATTATCAGCAACAACAACAACAAAAGACCATTATTATTACCAGAATCTAACCAAAGCTCCTCTGGATCAAATATCACCGTTTCCTCTGATGCCACTCTTGAAACCCCACCTCCTTCCAAGGCTCAGATTGTGGGATGGCCACCGGTTCAGTCATTTAGAAGGAACAGCCTTCAAGGGAAGAAGACGACGGCGGCAACGGCGGTGCCGGAGATTAGTGGAAATTATGTAAAAGTAAGCATGGATGGAGCTCCTTACTTGAGAAAAATTGATGTCAGTTTATACAAAGGCTACCCTGAACTTCTCCAAACTTTAGAAGACATGTTCAAATTCACCGTAGGTATGTATTATATTTTTAAGTAATTTTCCAACATAAAGTT

Coding sequence (CDS)

ATGGCGTTTGAAAATGGGTTAAACCTCGATGCGACGGAGCTCCGCCTTGGACCGCCCGGCGTCGACGACAATAAATTACAAGAACAACCTCAGTCTCTCAGAATTATCAGCAACAACAACAACAAAAGACCATTATTATTACCAGAATCTAACCAAAGCTCCTCTGGATCAAATATCACCGTTTCCTCTGATGCCACTCTTGAAACCCCACCTCCTTCCAAGGCTCAGATTGTGGGATGGCCACCGGTTCAGTCATTTAGAAGGAACAGCCTTCAAGGGAAGAAGACGACGGCGGCAACGGCGGTGCCGGAGATTAGTGGAAATTATGTAAAAGTAAGCATGGATGGAGCTCCTTACTTGAGAAAAATTGATGTCAGTTTATACAAAGGCTACCCTGAACTTCTCCAAACTTTAGAAGACATGTTCAAATTCACCGTAGGTATGTATTATATTTTTAAGTAA

Protein sequence

MAFENGLNLDATELRLGPPGVDDNKLQEQPQSLRIISNNNNKRPLLLPESNQSSSGSNITVSSDATLETPPPSKAQIVGWPPVQSFRRNSLQGKKTTAATAVPEISGNYVKVSMDGAPYLRKIDVSLYKGYPELLQTLEDMFKFTVGMYYIFK

Homology

[Close]

BLAST of Lsi05G016620 vs. ExPASy Swiss-Prot
Match: Q38822 (Auxin-responsive protein IAA3 OS=Arabidopsis thaliana OX=3702 GN=IAA3 PE=1 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 1.0e-28
Identity = 77/144 (53.47%), Postives = 92/144 (63.89%), Query Frame = 0


Query: 7   LNLDATELRLGPPGVDDNKLQEQPQSLRIISNNNNKRPLLLPESNQSSSGSNITVSSDAT 66
           +NL  TELRLG PG D+    ++  S     NNNNKR L      +  S S  T      
Sbjct: 5   VNLKETELRLGLPGTDNVCEAKERVS---CCNNNNKRVLSTDTEKEIESSSRKT------ 64

Query: 67  LETPPPSKAQIVGWPPVQSFRRNSLQGKKTTAATAVPEISGNYVKVSMDGAPYLRKIDVS 126
            ET PP KAQIVGWPPV+S+R+N++Q KK  +     E  G YVKVSMDGAPYLRKID+S
Sbjct: 65  -ETSPPRKAQIVGWPPVRSYRKNNIQSKKNESE---HEGQGIYVKVSMDGAPYLRKIDLS 124

Query: 127 LYKGYPELLQTLEDMFKFTVGMYY 151
            YKGY ELL+ LE MFKF+VG Y+
Sbjct: 125 CYKGYSELLKALEVMFKFSVGEYF 135

[Close]

BLAST of Lsi05G016620 vs. ExPASy Swiss-Prot
Match: P33077 (Auxin-responsive protein IAA4 OS=Arabidopsis thaliana OX=3702 GN=IAA4 PE=1 SV=2)

HSP 1 Score: 127.9 bits (320), Expect = 1.0e-28
Identity = 71/148 (47.97%), Postives = 98/148 (66.22%), Query Frame = 0


Query: 3   FENGLNLDATELRLGPPGVDDNKLQEQPQSLRIISNNNNKRPLLLPESNQSSSGSNITVS 62
           ++  +NL ATELRLG PG ++           +    +NKR  +LPE+ +        + 
Sbjct: 7   YDELVNLKATELRLGLPGTEET----------VSCGKSNKR--VLPEATEKE------IE 66

Query: 63  SDATLETPPPSKAQIVGWPPVQSFRRNSLQGKKTTAATAVPEISGNYVKVSMDGAPYLRK 122
           S    ET  P KAQIVGWPPV+S+R+N++Q KK+ +     E  GNYVKVSMDGAPYLRK
Sbjct: 67  STGKTETASPPKAQIVGWPPVRSYRKNNVQTKKSES-----EGQGNYVKVSMDGAPYLRK 126

Query: 123 IDVSLYKGYPELLQTLEDMFKFTVGMYY 151
           ID+++YK YPEL+++LE+MFKF+VG Y+
Sbjct: 127 IDLTMYKQYPELMKSLENMFKFSVGEYF 131

[Close]

BLAST of Lsi05G016620 vs. ExPASy Swiss-Prot
Match: O24543 (Auxin-induced protein 22E OS=Vigna radiata var. radiata OX=3916 GN=AUX22E PE=2 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 3.8e-28
Identity = 71/152 (46.71%), Postives = 101/152 (66.45%), Query Frame = 0


Query: 2   AFENGLNLDATELRLGPPGVDDNKLQEQPQSLRIISNNNNKRPLLLPE----SNQSSSGS 61
           ++E  LNL ATELRLG PG D+ + +++P S  ++ ++N +    L E    SN +S  S
Sbjct: 3   SYETELNLRATELRLGLPGSDEPQ-EKRPCSGSVVRSSNKRSSPELEESRCKSNINSDSS 62

Query: 62  NITVSSDATLETPPPSKAQIVGWPPVQSFRRNSLQGKKTTAATAVPEISGNYVKVSMDGA 121
           + T +SD   ++  P+K Q+VGWPP++SFR+NSLQ KK          +G Y+KVSM GA
Sbjct: 63  DSTTTSDHNEDSVQPAKVQVVGWPPIRSFRKNSLQQKKVEQGDG----TGMYLKVSMAGA 122

Query: 122 PYLRKIDVSLYKGYPELLQTLEDMFKFTVGMY 150
           PYLRKID+ +YK YPELL+ L+++FK T G Y
Sbjct: 123 PYLRKIDLKVYKSYPELLKALQNLFKCTFGEY 149

[Close]

BLAST of Lsi05G016620 vs. ExPASy Swiss-Prot
Match: O24542 (Auxin-induced protein 22D OS=Vigna radiata var. radiata OX=3916 GN=AUX22D PE=2 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 2.1e-26
Identity = 72/150 (48.00%), Postives = 96/150 (64.00%), Query Frame = 0


Query: 2   AFENGLNLDATELRLGPPGVDDNKLQEQPQSLRIISNNNNKRPLLLPESNQSSSGSNITV 61
           ++E  LNL ATELRLG PG D+ + +   +S        NKR      S ++S   +I+ 
Sbjct: 7   SYEKELNLKATELRLGLPGSDEPEKRATARS--------NKR-----SSPEASDEESISN 66

Query: 62  SSDATLE--TPPPSKAQIVGWPPVQSFRRNSLQGKKTTAATAVPEISGNYVKVSMDGAPY 121
            SD T E    PP+KAQ+VGWPP++S+R+N++Q KK   +    E +G YVKVSM GAPY
Sbjct: 67  GSDVTKEDNVVPPAKAQVVGWPPIRSYRKNNVQQKKEEES----EGNGMYVKVSMAGAPY 126

Query: 122 LRKIDVSLYKGYPELLQTLEDMFKFTVGMY 150
           LRKID+ +YK YPELL+ LE+MFK   G Y
Sbjct: 127 LRKIDLKVYKSYPELLKALENMFKCIFGEY 139

[Close]

BLAST of Lsi05G016620 vs. ExPASy Swiss-Prot
Match: P49677 (Auxin-responsive protein IAA1 OS=Arabidopsis thaliana OX=3702 GN=IAA1 PE=1 SV=2)

HSP 1 Score: 117.1 bits (292), Expect = 1.8e-25
Identity = 71/150 (47.33%), Postives = 89/150 (59.33%), Query Frame = 0


Query: 1   MAFENGLNLDATELRLGPPGVDDNKLQEQPQSLRIISNNNNKRPLLLPESNQSSSGSNIT 60
           M   NGLNL  TELRLG PG      +EQ   L  + +NN ++                 
Sbjct: 1   MEVTNGLNLKDTELRLGLPGAQ----EEQQLELSCVRSNNKRK----------------- 60

Query: 61  VSSDATLET-PPPSKAQIVGWPPVQSFRRNSLQGKKTTAATAVPEISGNYVKVSMDGAPY 120
            ++D+T E+ PPP+K QIVGWPPV+S R+N+    K            +YVKVSMDGAPY
Sbjct: 61  -NNDSTEESAPPPAKTQIVGWPPVRSNRKNN--NNKNV----------SYVKVSMDGAPY 116

Query: 121 LRKIDVSLYKGYPELLQTLEDMFKFTVGMY 150
           LRKID+ +YK YPELL+ LE+MFKFTVG Y
Sbjct: 121 LRKIDLKMYKNYPELLKALENMFKFTVGEY 116

[Close]

BLAST of Lsi05G016620 vs. ExPASy TrEMBL
Match: A0A5A7U4N6 (Auxin-responsive protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G001020 PE=3 SV=1)

HSP 1 Score: 256.9 bits (655), Expect = 5.3e-65
Identity = 133/151 (88.08%), Postives = 139/151 (92.05%), Query Frame = 0


Query: 1   MAFENGLNLDATELRLGPPGVDDNKLQEQPQSLRIISNNNNKRPLLLPESNQSSSGSNIT 60
           MAFENGLNLDATELRLGPPGVDDNKLQEQPQS+RI     NKRPLLLPESNQSSSGSN++
Sbjct: 1   MAFENGLNLDATELRLGPPGVDDNKLQEQPQSIRI-----NKRPLLLPESNQSSSGSNVS 60

Query: 61  VSSDATLETPPPSKAQIVGWPPVQSFRRNSLQGKKTT--AATAVPEISGNYVKVSMDGAP 120
           VSSDATL+TPPPSKAQIVGWPPVQSFRRNSLQGKKTT  A TA  E SGN+VKVSMDGAP
Sbjct: 61  VSSDATLDTPPPSKAQIVGWPPVQSFRRNSLQGKKTTVAATTAALESSGNFVKVSMDGAP 120

Query: 121 YLRKIDVSLYKGYPELLQTLEDMFKFTVGMY 150
           YLRKID+SLYKGYPELLQTLEDMFKFTVG Y
Sbjct: 121 YLRKIDLSLYKGYPELLQTLEDMFKFTVGEY 146

[Close]

BLAST of Lsi05G016620 vs. ExPASy TrEMBL
Match: A0A1S3AXE9 (Auxin-responsive protein OS=Cucumis melo OX=3656 GN=LOC103483650 PE=3 SV=1)

HSP 1 Score: 256.9 bits (655), Expect = 5.3e-65
Identity = 133/151 (88.08%), Postives = 139/151 (92.05%), Query Frame = 0


Query: 1   MAFENGLNLDATELRLGPPGVDDNKLQEQPQSLRIISNNNNKRPLLLPESNQSSSGSNIT 60
           MAFENGLNLDATELRLGPPGVDDNKLQEQPQS+RI     NKRPLLLPESNQSSSGSN++
Sbjct: 1   MAFENGLNLDATELRLGPPGVDDNKLQEQPQSIRI-----NKRPLLLPESNQSSSGSNVS 60

Query: 61  VSSDATLETPPPSKAQIVGWPPVQSFRRNSLQGKKTT--AATAVPEISGNYVKVSMDGAP 120
           VSSDATL+TPPPSKAQIVGWPPVQSFRRNSLQGKKTT  A TA  E SGN+VKVSMDGAP
Sbjct: 61  VSSDATLDTPPPSKAQIVGWPPVQSFRRNSLQGKKTTVAATTAALESSGNFVKVSMDGAP 120

Query: 121 YLRKIDVSLYKGYPELLQTLEDMFKFTVGMY 150
           YLRKID+SLYKGYPELLQTLEDMFKFTVG Y
Sbjct: 121 YLRKIDLSLYKGYPELLQTLEDMFKFTVGEY 146

[Close]

BLAST of Lsi05G016620 vs. ExPASy TrEMBL
Match: A0A0A0L8H1 (Auxin-responsive protein OS=Cucumis sativus OX=3659 GN=Csa_3G143580 PE=3 SV=1)

HSP 1 Score: 245.0 bits (624), Expect = 2.1e-61
Identity = 129/154 (83.77%), Postives = 138/154 (89.61%), Query Frame = 0


Query: 1   MAFENGLNLDATELRLGPPGVDDNKLQEQ--PQSLRIISNNNNKRPLLLPESNQSSSGSN 60
           MAF+NGLNLDATELRLGPPG+D+NKLQ+Q  PQS+RI     NKRPLLLPESNQSSSGSN
Sbjct: 1   MAFQNGLNLDATELRLGPPGLDENKLQDQQLPQSIRI-----NKRPLLLPESNQSSSGSN 60

Query: 61  ITVSSDATLETPPPSKAQIVGWPPVQSFRRNSLQGKKTT---AATAVPEISGNYVKVSMD 120
           I+VSSDATL+TPPPSKAQIVGWPPVQSFRRNSLQGKKTT   A TA  E SGN+VKVSMD
Sbjct: 61  ISVSSDATLDTPPPSKAQIVGWPPVQSFRRNSLQGKKTTTVAATTAAQESSGNFVKVSMD 120

Query: 121 GAPYLRKIDVSLYKGYPELLQTLEDMFKFTVGMY 150
           GAPYLRKID+SLYKGYP LLQTLEDMFKFTVG Y
Sbjct: 121 GAPYLRKIDLSLYKGYPVLLQTLEDMFKFTVGEY 149

[Close]

BLAST of Lsi05G016620 vs. ExPASy TrEMBL
Match: A0A6J1IXI2 (Auxin-responsive protein OS=Cucurbita maxima OX=3661 GN=LOC111480070 PE=3 SV=1)

HSP 1 Score: 234.6 bits (597), Expect = 2.8e-58
Identity = 125/151 (82.78%), Postives = 131/151 (86.75%), Query Frame = 0


Query: 1   MAFENGLNLDATELRLGPPGVDD--NKLQEQPQSLRIISNNNNKRPLLLPESNQSSSGSN 60
           MAF+N LNLDATELRLGPPG DD  N  QEQPQSLRII   NNKRP LLPESNQSSS SN
Sbjct: 1   MAFQNCLNLDATELRLGPPGADDDNNNNQEQPQSLRII---NNKRP-LLPESNQSSSASN 60

Query: 61  ITVSSDATLETPPPSKAQIVGWPPVQSFRRNSLQGKKTTAATAVPEISGNYVKVSMDGAP 120
           I+VSSDATL+TPPP+KAQIVGWPPVQSFRRNSLQ KKT  ATA  E SGNYVKVSMDGAP
Sbjct: 61  ISVSSDATLQTPPPTKAQIVGWPPVQSFRRNSLQSKKTAVATAAQESSGNYVKVSMDGAP 120

Query: 121 YLRKIDVSLYKGYPELLQTLEDMFKFTVGMY 150
           YLRKID+ LYKGYPELLQTL+DMFKF VG Y
Sbjct: 121 YLRKIDLCLYKGYPELLQTLQDMFKFRVGEY 147

[Close]

BLAST of Lsi05G016620 vs. ExPASy TrEMBL
Match: A0A6J1IAA9 (Auxin-responsive protein OS=Cucurbita maxima OX=3661 GN=LOC111473119 PE=3 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 4.1e-57
Identity = 127/150 (84.67%), Postives = 132/150 (88.00%), Query Frame = 0


Query: 1   MAFENGLNLDATELRLGPPGVDDNKLQEQPQSLRIISNNNNKRPLLLPESNQSSSGSNIT 60
           MAFE GLNLDATELRLGPPGVDDNK  ++PQSLRII   NNKRP LLPESNQSSS SNI+
Sbjct: 1   MAFEAGLNLDATELRLGPPGVDDNK--QEPQSLRII---NNKRP-LLPESNQSSSASNIS 60

Query: 61  VSSDATLETPPPSKAQIVGWPPVQSFRRNSLQGKKTTA-ATAVPEISGNYVKVSMDGAPY 120
           VS D  LETPPPSKAQIVGWPPVQSFRRNSLQGKKT A A A  E +GNYVKVSMDGAPY
Sbjct: 61  VSDD-NLETPPPSKAQIVGWPPVQSFRRNSLQGKKTAATAAAAGESTGNYVKVSMDGAPY 120

Query: 121 LRKIDVSLYKGYPELLQTLEDMFKFTVGMY 150
           LRKID+SLYKGYPELLQTLEDMFKFTVG Y
Sbjct: 121 LRKIDLSLYKGYPELLQTLEDMFKFTVGEY 143

[Close]

BLAST of Lsi05G016620 vs. NCBI nr
Match: XP_038877087.1 (auxin-responsive protein IAA4-like [Benincasa hispida])

HSP 1 Score: 262.3 bits (669), Expect = 2.6e-66
Identity = 135/149 (90.60%), Postives = 138/149 (92.62%), Query Frame = 0


Query: 1   MAFENGLNLDATELRLGPPGVDDNKLQEQPQSLRIISNNNNKRPLLLPESNQSSSGSNIT 60
           MAFE GLNLDATELRLGPPGVDD+K QEQPQSLR I+ NNNKR LLLPESNQSSSGSNIT
Sbjct: 1   MAFETGLNLDATELRLGPPGVDDSKSQEQPQSLRSIT-NNNKRSLLLPESNQSSSGSNIT 60

Query: 61  VSSDATLETPPPSKAQIVGWPPVQSFRRNSLQGKKTTAATAVPEISGNYVKVSMDGAPYL 120
           VSSD+TLETPPPSKAQIVGWPPVQSFRRN LQGKKT A TA PE SGNYVKVSMDGAPYL
Sbjct: 61  VSSDSTLETPPPSKAQIVGWPPVQSFRRNILQGKKTAAVTAAPESSGNYVKVSMDGAPYL 120

Query: 121 RKIDVSLYKGYPELLQTLEDMFKFTVGMY 150
           RKIDVSLYKGYPELLQTLEDMFKFTVG Y
Sbjct: 121 RKIDVSLYKGYPELLQTLEDMFKFTVGEY 148

[Close]

BLAST of Lsi05G016620 vs. NCBI nr
Match: XP_008438589.1 (PREDICTED: auxin-responsive protein IAA4-like [Cucumis melo] >KAA0049307.1 auxin-responsive protein IAA4-like [Cucumis melo var. makuwa] >TYK17251.1 auxin-responsive protein IAA4-like [Cucumis melo var. makuwa])

HSP 1 Score: 256.9 bits (655), Expect = 1.1e-64
Identity = 133/151 (88.08%), Postives = 139/151 (92.05%), Query Frame = 0


Query: 1   MAFENGLNLDATELRLGPPGVDDNKLQEQPQSLRIISNNNNKRPLLLPESNQSSSGSNIT 60
           MAFENGLNLDATELRLGPPGVDDNKLQEQPQS+RI     NKRPLLLPESNQSSSGSN++
Sbjct: 1   MAFENGLNLDATELRLGPPGVDDNKLQEQPQSIRI-----NKRPLLLPESNQSSSGSNVS 60

Query: 61  VSSDATLETPPPSKAQIVGWPPVQSFRRNSLQGKKTT--AATAVPEISGNYVKVSMDGAP 120
           VSSDATL+TPPPSKAQIVGWPPVQSFRRNSLQGKKTT  A TA  E SGN+VKVSMDGAP
Sbjct: 61  VSSDATLDTPPPSKAQIVGWPPVQSFRRNSLQGKKTTVAATTAALESSGNFVKVSMDGAP 120

Query: 121 YLRKIDVSLYKGYPELLQTLEDMFKFTVGMY 150
           YLRKID+SLYKGYPELLQTLEDMFKFTVG Y
Sbjct: 121 YLRKIDLSLYKGYPELLQTLEDMFKFTVGEY 146

[Close]

BLAST of Lsi05G016620 vs. NCBI nr
Match: XP_004134103.1 (auxin-responsive protein IAA4 [Cucumis sativus] >KGN56917.1 hypothetical protein Csa_009567 [Cucumis sativus])

HSP 1 Score: 245.0 bits (624), Expect = 4.3e-61
Identity = 129/154 (83.77%), Postives = 138/154 (89.61%), Query Frame = 0


Query: 1   MAFENGLNLDATELRLGPPGVDDNKLQEQ--PQSLRIISNNNNKRPLLLPESNQSSSGSN 60
           MAF+NGLNLDATELRLGPPG+D+NKLQ+Q  PQS+RI     NKRPLLLPESNQSSSGSN
Sbjct: 1   MAFQNGLNLDATELRLGPPGLDENKLQDQQLPQSIRI-----NKRPLLLPESNQSSSGSN 60

Query: 61  ITVSSDATLETPPPSKAQIVGWPPVQSFRRNSLQGKKTT---AATAVPEISGNYVKVSMD 120
           I+VSSDATL+TPPPSKAQIVGWPPVQSFRRNSLQGKKTT   A TA  E SGN+VKVSMD
Sbjct: 61  ISVSSDATLDTPPPSKAQIVGWPPVQSFRRNSLQGKKTTTVAATTAAQESSGNFVKVSMD 120

Query: 121 GAPYLRKIDVSLYKGYPELLQTLEDMFKFTVGMY 150
           GAPYLRKID+SLYKGYP LLQTLEDMFKFTVG Y
Sbjct: 121 GAPYLRKIDLSLYKGYPVLLQTLEDMFKFTVGEY 149

[Close]

BLAST of Lsi05G016620 vs. NCBI nr
Match: XP_022980785.1 (auxin-responsive protein IAA4-like [Cucurbita maxima])

HSP 1 Score: 234.6 bits (597), Expect = 5.8e-58
Identity = 125/151 (82.78%), Postives = 131/151 (86.75%), Query Frame = 0


Query: 1   MAFENGLNLDATELRLGPPGVDD--NKLQEQPQSLRIISNNNNKRPLLLPESNQSSSGSN 60
           MAF+N LNLDATELRLGPPG DD  N  QEQPQSLRII   NNKRP LLPESNQSSS SN
Sbjct: 1   MAFQNCLNLDATELRLGPPGADDDNNNNQEQPQSLRII---NNKRP-LLPESNQSSSASN 60

Query: 61  ITVSSDATLETPPPSKAQIVGWPPVQSFRRNSLQGKKTTAATAVPEISGNYVKVSMDGAP 120
           I+VSSDATL+TPPP+KAQIVGWPPVQSFRRNSLQ KKT  ATA  E SGNYVKVSMDGAP
Sbjct: 61  ISVSSDATLQTPPPTKAQIVGWPPVQSFRRNSLQSKKTAVATAAQESSGNYVKVSMDGAP 120

Query: 121 YLRKIDVSLYKGYPELLQTLEDMFKFTVGMY 150
           YLRKID+ LYKGYPELLQTL+DMFKF VG Y
Sbjct: 121 YLRKIDLCLYKGYPELLQTLQDMFKFRVGEY 147

[Close]

BLAST of Lsi05G016620 vs. NCBI nr
Match: XP_023527189.1 (auxin-responsive protein IAA4-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 231.5 bits (589), Expect = 4.9e-57
Identity = 123/154 (79.87%), Postives = 131/154 (85.06%), Query Frame = 0


Query: 1   MAFENGLNLDATELRLGPPGVDD-----NKLQEQPQSLRIISNNNNKRPLLLPESNQSSS 60
           MAF+N LNLDATELRLGPPG DD     N  QEQPQSLRII   NNKRP LLPESNQSSS
Sbjct: 1   MAFQNCLNLDATELRLGPPGADDDDNNNNNSQEQPQSLRII---NNKRP-LLPESNQSSS 60

Query: 61  GSNITVSSDATLETPPPSKAQIVGWPPVQSFRRNSLQGKKTTAATAVPEISGNYVKVSMD 120
            SNI+VSSD+TL+TPPP+KAQIVGWPPVQSFRRN+LQ KKT  ATA  E SGNYVKVSMD
Sbjct: 61  ASNISVSSDSTLQTPPPTKAQIVGWPPVQSFRRNTLQSKKTAVATAAQESSGNYVKVSMD 120

Query: 121 GAPYLRKIDVSLYKGYPELLQTLEDMFKFTVGMY 150
           GAPYLRKID+ LYKGYPELLQTL+DMFKF VG Y
Sbjct: 121 GAPYLRKIDLCLYKGYPELLQTLQDMFKFRVGEY 150

[Close]

BLAST of Lsi05G016620 vs. TAIR 10
Match: AT1G04240.1 (AUX/IAA transcriptional regulator family protein )

HSP 1 Score: 127.9 bits (320), Expect = 7.1e-30
Identity = 77/144 (53.47%), Postives = 92/144 (63.89%), Query Frame = 0


Query: 7   LNLDATELRLGPPGVDDNKLQEQPQSLRIISNNNNKRPLLLPESNQSSSGSNITVSSDAT 66
           +NL  TELRLG PG D+    ++  S     NNNNKR L      +  S S  T      
Sbjct: 5   VNLKETELRLGLPGTDNVCEAKERVS---CCNNNNKRVLSTDTEKEIESSSRKT------ 64

Query: 67  LETPPPSKAQIVGWPPVQSFRRNSLQGKKTTAATAVPEISGNYVKVSMDGAPYLRKIDVS 126
            ET PP KAQIVGWPPV+S+R+N++Q KK  +     E  G YVKVSMDGAPYLRKID+S
Sbjct: 65  -ETSPPRKAQIVGWPPVRSYRKNNIQSKKNESE---HEGQGIYVKVSMDGAPYLRKIDLS 124

Query: 127 LYKGYPELLQTLEDMFKFTVGMYY 151
            YKGY ELL+ LE MFKF+VG Y+
Sbjct: 125 CYKGYSELLKALEVMFKFSVGEYF 135

[Close]

BLAST of Lsi05G016620 vs. TAIR 10
Match: AT5G43700.1 (AUX/IAA transcriptional regulator family protein )

HSP 1 Score: 127.9 bits (320), Expect = 7.1e-30
Identity = 71/148 (47.97%), Postives = 98/148 (66.22%), Query Frame = 0


Query: 3   FENGLNLDATELRLGPPGVDDNKLQEQPQSLRIISNNNNKRPLLLPESNQSSSGSNITVS 62
           ++  +NL ATELRLG PG ++           +    +NKR  +LPE+ +        + 
Sbjct: 7   YDELVNLKATELRLGLPGTEET----------VSCGKSNKR--VLPEATEKE------IE 66

Query: 63  SDATLETPPPSKAQIVGWPPVQSFRRNSLQGKKTTAATAVPEISGNYVKVSMDGAPYLRK 122
           S    ET  P KAQIVGWPPV+S+R+N++Q KK+ +     E  GNYVKVSMDGAPYLRK
Sbjct: 67  STGKTETASPPKAQIVGWPPVRSYRKNNVQTKKSES-----EGQGNYVKVSMDGAPYLRK 126

Query: 123 IDVSLYKGYPELLQTLEDMFKFTVGMYY 151
           ID+++YK YPEL+++LE+MFKF+VG Y+
Sbjct: 127 IDLTMYKQYPELMKSLENMFKFSVGEYF 131

[Close]

BLAST of Lsi05G016620 vs. TAIR 10
Match: AT4G14560.1 (indole-3-acetic acid inducible )

HSP 1 Score: 117.1 bits (292), Expect = 1.3e-26
Identity = 71/150 (47.33%), Postives = 89/150 (59.33%), Query Frame = 0


Query: 1   MAFENGLNLDATELRLGPPGVDDNKLQEQPQSLRIISNNNNKRPLLLPESNQSSSGSNIT 60
           M   NGLNL  TELRLG PG      +EQ   L  + +NN ++                 
Sbjct: 1   MEVTNGLNLKDTELRLGLPGAQ----EEQQLELSCVRSNNKRK----------------- 60

Query: 61  VSSDATLET-PPPSKAQIVGWPPVQSFRRNSLQGKKTTAATAVPEISGNYVKVSMDGAPY 120
            ++D+T E+ PPP+K QIVGWPPV+S R+N+    K            +YVKVSMDGAPY
Sbjct: 61  -NNDSTEESAPPPAKTQIVGWPPVRSNRKNN--NNKNV----------SYVKVSMDGAPY 116

Query: 121 LRKIDVSLYKGYPELLQTLEDMFKFTVGMY 150
           LRKID+ +YK YPELL+ LE+MFKFTVG Y
Sbjct: 121 LRKIDLKMYKNYPELLKALENMFKFTVGEY 116

[Close]

BLAST of Lsi05G016620 vs. TAIR 10
Match: AT3G23030.1 (indole-3-acetic acid inducible 2 )

HSP 1 Score: 101.3 bits (251), Expect = 7.1e-22
Identity = 69/151 (45.70%), Postives = 84/151 (55.63%), Query Frame = 0


Query: 1   MAFE--NGLNLDATELRLGPPGVDDNKLQEQPQSLRIISNNNNKRPLLLPESNQSSSGSN 60
           MA+E  N LNL  TEL LG PG  +   +EQ  S      +NNKR  L  E+        
Sbjct: 1   MAYEKVNELNLKDTELCLGLPGRTEKIKEEQEVS---CVKSNNKR--LFEETRDEE---- 60

Query: 61  ITVSSDATLETPPPSKAQIVGWPPVQSFRRNSLQGKKTTAATAVPEISGNYVKVSMDGAP 120
                    E+ PP+K QIVGWPPV+S R+N+               S +YVKVSMDGAP
Sbjct: 61  ---------ESTPPTKTQIVGWPPVRSSRKNN--------------NSVSYVKVSMDGAP 119

Query: 121 YLRKIDVSLYKGYPELLQTLEDMFKFTVGMY 150
           YLRKID+  YK YPELL+ LE+MFK  +G Y
Sbjct: 121 YLRKIDLKTYKNYPELLKALENMFKVMIGEY 119

[Close]

BLAST of Lsi05G016620 vs. TAIR 10
Match: AT3G04730.1 (indoleacetic acid-induced protein 16 )

HSP 1 Score: 97.1 bits (240), Expect = 1.3e-20
Identity = 67/168 (39.88%), Postives = 85/168 (50.60%), Query Frame = 0


Query: 7   LNLDATELRLGPPGVDDNKLQEQPQSLRIISNNNNKRPL-------LLPESNQSSSGSNI 66
           +N +ATELRLG PG +            +   NN KR         L   S    S S +
Sbjct: 2   INFEATELRLGLPGGNHGG--------EMAGKNNGKRGFSETVDLKLNLSSTAMDSVSKV 61

Query: 67  TVSSDATLETPPPSKAQIVGWPPVQSFRRNSLQGKKTTAATAV---PEISGN-------- 126
            + +       PP+KAQ+VGWPPV+SFR+N + G+K T   A     + SG+        
Sbjct: 62  DLENMKEKVVKPPAKAQVVGWPPVRSFRKNVMSGQKPTTGDATEGNDKTSGSSGATSSAS 121

Query: 127 ------YVKVSMDGAPYLRKIDVSLYKGYPELLQTLEDMF-KFTVGMY 150
                 YVKVSMDGAPYLRKID+ LYK Y +L   L  MF  FT+G Y
Sbjct: 122 ACATVAYVKVSMDGAPYLRKIDLKLYKTYQDLSNALSKMFSSFTIGNY 161

The following BLAST results are available for this feature:

BLAST of Lsi05G016620 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q38822	1.0e-28	53.47	Auxin-responsive protein IAA3 OS=Arabidopsis thaliana OX=3702 GN=IAA3 PE=1 SV=1	[more]
P33077	1.0e-28	47.97	Auxin-responsive protein IAA4 OS=Arabidopsis thaliana OX=3702 GN=IAA4 PE=1 SV=2	[more]
O24543	3.8e-28	46.71	Auxin-induced protein 22E OS=Vigna radiata var. radiata OX=3916 GN=AUX22E PE=2 S...	[more]
O24542	2.1e-26	48.00	Auxin-induced protein 22D OS=Vigna radiata var. radiata OX=3916 GN=AUX22D PE=2 S...	[more]
P49677	1.8e-25	47.33	Auxin-responsive protein IAA1 OS=Arabidopsis thaliana OX=3702 GN=IAA1 PE=1 SV=2	[more]

BLAST of Lsi05G016620 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U4N6	5.3e-65	88.08	Auxin-responsive protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A1S3AXE9	5.3e-65	88.08	Auxin-responsive protein OS=Cucumis melo OX=3656 GN=LOC103483650 PE=3 SV=1	[more]
A0A0A0L8H1	2.1e-61	83.77	Auxin-responsive protein OS=Cucumis sativus OX=3659 GN=Csa_3G143580 PE=3 SV=1	[more]
A0A6J1IXI2	2.8e-58	82.78	Auxin-responsive protein OS=Cucurbita maxima OX=3661 GN=LOC111480070 PE=3 SV=1	[more]
A0A6J1IAA9	4.1e-57	84.67	Auxin-responsive protein OS=Cucurbita maxima OX=3661 GN=LOC111473119 PE=3 SV=1	[more]

BLAST of Lsi05G016620 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038877087.1	2.6e-66	90.60	auxin-responsive protein IAA4-like [Benincasa hispida]	[more]
XP_008438589.1	1.1e-64	88.08	PREDICTED: auxin-responsive protein IAA4-like [Cucumis melo] >KAA0049307.1 auxin...	[more]
XP_004134103.1	4.3e-61	83.77	auxin-responsive protein IAA4 [Cucumis sativus] >KGN56917.1 hypothetical protein...	[more]
XP_022980785.1	5.8e-58	82.78	auxin-responsive protein IAA4-like [Cucurbita maxima]	[more]
XP_023527189.1	4.9e-57	79.87	auxin-responsive protein IAA4-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Lsi05G016620 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G04240.1	7.1e-30	53.47	AUX/IAA transcriptional regulator family protein	[more]
AT5G43700.1	7.1e-30	47.97	AUX/IAA transcriptional regulator family protein	[more]
AT4G14560.1	1.3e-26	47.33	indole-3-acetic acid inducible	[more]
AT3G23030.1	7.1e-22	45.70	indole-3-acetic acid inducible 2	[more]
AT3G04730.1	1.3e-20	39.88	indoleacetic acid-induced protein 16	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.10.20.90		coord: 103..150 e-value: 1.5E-13 score: 52.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 25..70
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..79
None	No IPR available	PANTHER	PTHR31734:SF167	AUXIN-RESPONSIVE PROTEIN	coord: 1..149
None	No IPR available	SUPERFAMILY	54277	CAD & PB1 domains	coord: 107..148
IPR033389	AUX/IAA domain	PFAM	PF02309	AUX_IAA	coord: 12..147 e-value: 3.2E-28 score: 99.2
IPR003311	AUX/IAA protein	PANTHER	PTHR31734	AUXIN-RESPONSIVE PROTEIN IAA17	coord: 1..149
IPR000270	PB1 domain	PROSITE	PS51745	PB1	coord: 107..153 score: 14.604919

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi05G016620.1	Lsi05G016620.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009734	auxin-activated signaling pathway
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0005515	protein binding