Lsi05G015330 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi05G015330
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	60S ribosome subunit biogenesis protein NIP7 homolog
Location	chr05: 23118447 .. 23119010 (+)
RNA-Seq Expression	Lsi05G015330
Synteny	Lsi05G015330

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGCCCTTAGACGAGCAGGAGACCACCGTCGTGTTCGAAAAGCTTCACAAATTCACAGGAAACAACCTCAAGAACATCGTTGAGAATCCCTCTCACGAAGGCACCGAACCAAATCCCGGCCGCTACTGCTTCCGCCTCCACAAGAACAAAGTCTATTACGTCAGTGACTCCCTCGTCAAGCGAGCCACCAACGTTGCTCGCTCCAACCTCGTCGCTCTCGGCACCTGCATCGGAAAGTTCACTCATGGCGGCAGTTTTCATCTCACTGTTCACTCGCTAGGGCTATTGTCCCCCAATGCCAAGCACAAGGTTTGGCTTAAACCAACTTCTGAGATGTCTTTTCTGTATGGAAACCATGTTTTAAAAGGTGGGTTAGGGCGGATTACTGAAAATATTGCTCCCGGTGATGGGGTCGTTGTGTATTCTATGTCGGATGTCCCTTTGGGATTTGGAGTTGCGGCGAAGTCCACGCAGGATTGCAGGAAGTTGGACCCGAATGGGATTGTGGTTCTTCACCAGTCGGATATTGGAGAGTATTTGAGGATGGAGGATGAGCTTTAA

mRNA sequence

ATGAGGCCCTTAGACGAGCAGGAGACCACCGTCGTGTTCGAAAAGCTTCACAAATTCACAGGAAACAACCTCAAGAACATCGTTGAGAATCCCTCTCACGAAGGCACCGAACCAAATCCCGGCCGCTACTGCTTCCGCCTCCACAAGAACAAAGTCTATTACGTCAGTGACTCCCTCGTCAAGCGAGCCACCAACGTTGCTCGCTCCAACCTCGTCGCTCTCGGCACCTGCATCGGAAAGTTCACTCATGGCGGCAGTTTTCATCTCACTGTTCACTCGCTAGGGCTATTGTCCCCCAATGCCAAGCACAAGGTTTGGCTTAAACCAACTTCTGAGATGTCTTTTCTGTATGGAAACCATGTTTTAAAAGGTGGGTTAGGGCGGATTACTGAAAATATTGCTCCCGGTGATGGGGTCGTTGTGTATTCTATGTCGGATGTCCCTTTGGGATTTGGAGTTGCGGCGAAGTCCACGCAGGATTGCAGGAAGTTGGACCCGAATGGGATTGTGGTTCTTCACCAGTCGGATATTGGAGAGTATTTGAGGATGGAGGATGAGCTTTAA

Coding sequence (CDS)

ATGAGGCCCTTAGACGAGCAGGAGACCACCGTCGTGTTCGAAAAGCTTCACAAATTCACAGGAAACAACCTCAAGAACATCGTTGAGAATCCCTCTCACGAAGGCACCGAACCAAATCCCGGCCGCTACTGCTTCCGCCTCCACAAGAACAAAGTCTATTACGTCAGTGACTCCCTCGTCAAGCGAGCCACCAACGTTGCTCGCTCCAACCTCGTCGCTCTCGGCACCTGCATCGGAAAGTTCACTCATGGCGGCAGTTTTCATCTCACTGTTCACTCGCTAGGGCTATTGTCCCCCAATGCCAAGCACAAGGTTTGGCTTAAACCAACTTCTGAGATGTCTTTTCTGTATGGAAACCATGTTTTAAAAGGTGGGTTAGGGCGGATTACTGAAAATATTGCTCCCGGTGATGGGGTCGTTGTGTATTCTATGTCGGATGTCCCTTTGGGATTTGGAGTTGCGGCGAAGTCCACGCAGGATTGCAGGAAGTTGGACCCGAATGGGATTGTGGTTCTTCACCAGTCGGATATTGGAGAGTATTTGAGGATGGAGGATGAGCTTTAA

Protein sequence

MRPLDEQETTVVFEKLHKFTGNNLKNIVENPSHEGTEPNPGRYCFRLHKNKVYYVSDSLVKRATNVARSNLVALGTCIGKFTHGGSFHLTVHSLGLLSPNAKHKVWLKPTSEMSFLYGNHVLKGGLGRITENIAPGDGVVVYSMSDVPLGFGVAAKSTQDCRKLDPNGIVVLHQSDIGEYLRMEDEL

Homology

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BLAST of Lsi05G015330 vs. ExPASy Swiss-Prot
Match: A4QND5 (60S ribosome subunit biogenesis protein NIP7 homolog OS=Xenopus tropicalis OX=8364 GN=nip7 PE=2 SV=1)

HSP 1 Score: 239.2 bits (609), Expect = 3.8e-62
Identity = 115/187 (61.50%), Postives = 141/187 (75.40%), Query Frame = 0


Query: 1   MRPLDEQETTVVFEKLHKFTGNNLKNIVENPSHEGTEPNPGRYCFRLHKNKVYYVSDSLV 60
           MRPL ++ET  +FEKL K+ G N+K +V+ P         G YCFRLH ++VYYVS+ ++
Sbjct: 1   MRPLTDEETKAMFEKLSKYIGENIKLLVDRPD--------GTYCFRLHNDRVYYVSERIL 60

Query: 61  KRATNVARSNLVALGTCIGKFTHGGSFHLTVHSLGLLSPNAKHKVWLKPTSEMSFLYGNH 120
           K ATN+AR  LV+LGTC GKFT    F L V +L  L+P AK+KVW+KP +E SFLYGNH
Sbjct: 61  KLATNIARDKLVSLGTCFGKFTKTHKFRLHVTALDYLAPYAKYKVWVKPGAEQSFLYGNH 120

Query: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGVAAKSTQDCRKLDPNGIVVLHQSDIGEY 180
           VLK GLGRITEN +   GVVVYSM+D+PLGFGVAAKSTQ+CRKLDP  IVV HQ+D+GEY
Sbjct: 121 VLKSGLGRITENTSQYQGVVVYSMADIPLGFGVAAKSTQECRKLDPMAIVVFHQADVGEY 179

Query: 181 LRMEDEL 188
           +R ED L
Sbjct: 181 IRHEDTL 179

[Close]

BLAST of Lsi05G015330 vs. ExPASy Swiss-Prot
Match: Q6DFH9 (60S ribosome subunit biogenesis protein NIP7 homolog OS=Xenopus laevis OX=8355 GN=nip7 PE=2 SV=1)

HSP 1 Score: 238.4 bits (607), Expect = 6.4e-62
Identity = 115/187 (61.50%), Postives = 140/187 (74.87%), Query Frame = 0


Query: 1   MRPLDEQETTVVFEKLHKFTGNNLKNIVENPSHEGTEPNPGRYCFRLHKNKVYYVSDSLV 60
           MRPL ++ET  +FEKL K+ G N+K +V+ P         G YCFRLH ++VYYVS+ ++
Sbjct: 1   MRPLTDEETRAMFEKLSKYIGENIKLLVDRPD--------GTYCFRLHNDRVYYVSEKIL 60

Query: 61  KRATNVARSNLVALGTCIGKFTHGGSFHLTVHSLGLLSPNAKHKVWLKPTSEMSFLYGNH 120
           K ATN+AR  LV+ GTC GKFT    F L V +L  L+P AK+KVW+KP +E SFLYGNH
Sbjct: 61  KLATNIARDKLVSFGTCFGKFTKTQKFRLHVTALDYLAPYAKYKVWVKPGAEQSFLYGNH 120

Query: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGVAAKSTQDCRKLDPNGIVVLHQSDIGEY 180
           VLK GLGRITEN +   GVVVYSM+DVPLGFGVAAKSTQ+CRKLDP  IVV HQ+D+GEY
Sbjct: 121 VLKSGLGRITENTSQYQGVVVYSMADVPLGFGVAAKSTQECRKLDPMAIVVFHQADVGEY 179

Query: 181 LRMEDEL 188
           +R ED L
Sbjct: 181 IRHEDTL 179

[Close]

BLAST of Lsi05G015330 vs. ExPASy Swiss-Prot
Match: Q4T2X8 (60S ribosome subunit biogenesis protein NIP7 homolog OS=Tetraodon nigroviridis OX=99883 GN=nip7 PE=3 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 4.2e-61
Identity = 112/187 (59.89%), Postives = 140/187 (74.87%), Query Frame = 0


Query: 1   MRPLDEQETTVVFEKLHKFTGNNLKNIVENPSHEGTEPNPGRYCFRLHKNKVYYVSDSLV 60
           MRPL E+ET  +FEKL K+ G N+K +V+ P         G YCFRLH ++VYY+S+ ++
Sbjct: 1   MRPLTEEETKTMFEKLSKYIGENIKLLVDRPD--------GTYCFRLHNDRVYYMSERIL 60

Query: 61  KRATNVARSNLVALGTCIGKFTHGGSFHLTVHSLGLLSPNAKHKVWLKPTSEMSFLYGNH 120
           K ATN+AR  LV++GTC GKFT    F L + +L  L+P AK KVW+KP +E SFLYGNH
Sbjct: 61  KLATNIARQKLVSVGTCFGKFTKTSKFRLHITALDFLAPYAKFKVWVKPGAEQSFLYGNH 120

Query: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGVAAKSTQDCRKLDPNGIVVLHQSDIGEY 180
           VLK GLGRITEN A   GVVVYSM+DVPLGFGVAAKSTQ+CR++DP  IVV HQ+D+GE+
Sbjct: 121 VLKSGLGRITENTAQYQGVVVYSMADVPLGFGVAAKSTQECRRVDPMSIVVFHQADVGEF 179

Query: 181 LRMEDEL 188
           +R ED L
Sbjct: 181 IRNEDSL 179

[Close]

BLAST of Lsi05G015330 vs. ExPASy Swiss-Prot
Match: Q9WV50 (60S ribosome subunit biogenesis protein NIP7 homolog OS=Rattus norvegicus OX=10116 GN=Nip7 PE=2 SV=1)

HSP 1 Score: 234.6 bits (597), Expect = 9.3e-61
Identity = 114/187 (60.96%), Postives = 140/187 (74.87%), Query Frame = 0


Query: 1   MRPLDEQETTVVFEKLHKFTGNNLKNIVENPSHEGTEPNPGRYCFRLHKNKVYYVSDSLV 60
           MRPL E+ET V+FEK+ K+ G NL+ +V+ P         G YCFRLH ++VYYVS+ ++
Sbjct: 1   MRPLTEEETRVMFEKIAKYIGENLQLLVDRPD--------GTYCFRLHNDRVYYVSEMIL 60

Query: 61  KRATNVARSNLVALGTCIGKFTHGGSFHLTVHSLGLLSPNAKHKVWLKPTSEMSFLYGNH 120
           K A N++   LV+LGTC GKFT    F L V +L  L+P AK+KVW+KP +E SFLYGNH
Sbjct: 61  KLAANISGDKLVSLGTCFGKFTKTHKFRLHVTALDFLAPYAKYKVWIKPGAEQSFLYGNH 120

Query: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGVAAKSTQDCRKLDPNGIVVLHQSDIGEY 180
           VLK GLGRITEN +   GVVVYSM+DVPLGFGVAAKSTQDCRK+DP  IVV HQ+DIGEY
Sbjct: 121 VLKSGLGRITENTSQYQGVVVYSMADVPLGFGVAAKSTQDCRKVDPMAIVVFHQADIGEY 179

Query: 181 LRMEDEL 188
           +R E+ L
Sbjct: 181 IRHEETL 179

[Close]

BLAST of Lsi05G015330 vs. ExPASy Swiss-Prot
Match: Q9Y221 (60S ribosome subunit biogenesis protein NIP7 homolog OS=Homo sapiens OX=9606 GN=NIP7 PE=1 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 1.6e-60
Identity = 113/187 (60.43%), Postives = 140/187 (74.87%), Query Frame = 0


Query: 1   MRPLDEQETTVVFEKLHKFTGNNLKNIVENPSHEGTEPNPGRYCFRLHKNKVYYVSDSLV 60
           MRPL E+ET V+FEK+ K+ G NL+ +V+ P         G YCFRLH ++VYYVS+ ++
Sbjct: 1   MRPLTEEETRVMFEKIAKYIGENLQLLVDRPD--------GTYCFRLHNDRVYYVSEKIM 60

Query: 61  KRATNVARSNLVALGTCIGKFTHGGSFHLTVHSLGLLSPNAKHKVWLKPTSEMSFLYGNH 120
           K A N++   LV+LGTC GKFT    F L V +L  L+P AK+KVW+KP +E SFLYGNH
Sbjct: 61  KLAANISGDKLVSLGTCFGKFTKTHKFRLHVTALDYLAPYAKYKVWIKPGAEQSFLYGNH 120

Query: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGVAAKSTQDCRKLDPNGIVVLHQSDIGEY 180
           VLK GLGRITEN +   GVVVYSM+D+PLGFGVAAKSTQDCRK+DP  IVV HQ+DIGEY
Sbjct: 121 VLKSGLGRITENTSQYQGVVVYSMADIPLGFGVAAKSTQDCRKVDPMAIVVFHQADIGEY 179

Query: 181 LRMEDEL 188
           +R E+ L
Sbjct: 181 VRHEETL 179

[Close]

BLAST of Lsi05G015330 vs. ExPASy TrEMBL
Match: A0A0A0L578 (60S ribosome subunit biogenesis protein NIP7 homolog OS=Cucumis sativus OX=3659 GN=Csa_3G153740 PE=3 SV=1)

HSP 1 Score: 382.1 bits (980), Expect = 1.3e-102
Identity = 183/187 (97.86%), Postives = 185/187 (98.93%), Query Frame = 0


Query: 1   MRPLDEQETTVVFEKLHKFTGNNLKNIVENPSHEGTEPNPGRYCFRLHKNKVYYVSDSLV 60
           MRPLDEQETTVVFEKLHKFTGNNLKNIVENPSHEGTEPNPGRYCFRLHKNKVYYVSDSLV
Sbjct: 1   MRPLDEQETTVVFEKLHKFTGNNLKNIVENPSHEGTEPNPGRYCFRLHKNKVYYVSDSLV 60

Query: 61  KRATNVARSNLVALGTCIGKFTHGGSFHLTVHSLGLLSPNAKHKVWLKPTSEMSFLYGNH 120
           KRATNVARSNLV+LGTCIGKFTHGGSFHLTV SLGLLSPNAKHKVWLKPTSEMSFLYGNH
Sbjct: 61  KRATNVARSNLVSLGTCIGKFTHGGSFHLTVQSLGLLSPNAKHKVWLKPTSEMSFLYGNH 120

Query: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGVAAKSTQDCRKLDPNGIVVLHQSDIGEY 180
           VLKGGLGRITENI PGDGVVVYSMSDVPLGFG+AAKSTQDCRKLDPNGIVVLHQSDIGEY
Sbjct: 121 VLKGGLGRITENIVPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY 180

Query: 181 LRMEDEL 188
           LRMEDEL
Sbjct: 181 LRMEDEL 187

[Close]

BLAST of Lsi05G015330 vs. ExPASy TrEMBL
Match: A0A1S3AXI3 (60S ribosome subunit biogenesis protein NIP7 homolog OS=Cucumis melo OX=3656 GN=LOC103483837 PE=3 SV=1)

HSP 1 Score: 379.0 bits (972), Expect = 1.1e-101
Identity = 182/187 (97.33%), Postives = 184/187 (98.40%), Query Frame = 0


Query: 1   MRPLDEQETTVVFEKLHKFTGNNLKNIVENPSHEGTEPNPGRYCFRLHKNKVYYVSDSLV 60
           MRPLDEQETTVVFEKLHKFTGNNLKNIVENPSHEGTEPNPGRYCFRL KNKVYYVSDSLV
Sbjct: 1   MRPLDEQETTVVFEKLHKFTGNNLKNIVENPSHEGTEPNPGRYCFRLQKNKVYYVSDSLV 60

Query: 61  KRATNVARSNLVALGTCIGKFTHGGSFHLTVHSLGLLSPNAKHKVWLKPTSEMSFLYGNH 120
           KRATNVARSNLV+LGTCIGKFTHGGSFHLTV SLGLLSPNAKHKVWLKPTSEMSFLYGNH
Sbjct: 61  KRATNVARSNLVSLGTCIGKFTHGGSFHLTVQSLGLLSPNAKHKVWLKPTSEMSFLYGNH 120

Query: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGVAAKSTQDCRKLDPNGIVVLHQSDIGEY 180
           VLKGGLGRITENI PGDGVVVYSMSDVPLGFG+AAKSTQDCRKLDPNGIVVLHQSDIGEY
Sbjct: 121 VLKGGLGRITENIVPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY 180

Query: 181 LRMEDEL 188
           LRMEDEL
Sbjct: 181 LRMEDEL 187

[Close]

BLAST of Lsi05G015330 vs. ExPASy TrEMBL
Match: A0A6J1IQ28 (60S ribosome subunit biogenesis protein NIP7 homolog OS=Cucurbita maxima OX=3661 GN=LOC111479477 PE=3 SV=1)

HSP 1 Score: 374.0 bits (959), Expect = 3.6e-100
Identity = 180/187 (96.26%), Postives = 182/187 (97.33%), Query Frame = 0


Query: 1   MRPLDEQETTVVFEKLHKFTGNNLKNIVENPSHEGTEPNPGRYCFRLHKNKVYYVSDSLV 60
           MRPLDE+ETT VFEKLHKFTGNNLKNIVENPSHEG E NPGRYCFRLHKNKVYYVSDSLV
Sbjct: 1   MRPLDEKETTAVFEKLHKFTGNNLKNIVENPSHEGPELNPGRYCFRLHKNKVYYVSDSLV 60

Query: 61  KRATNVARSNLVALGTCIGKFTHGGSFHLTVHSLGLLSPNAKHKVWLKPTSEMSFLYGNH 120
           KRATNVARSNLV LGTCIGKFTHGGSFHLTVHSLGLLS NAKHKVWLKPTSEMSFLYGNH
Sbjct: 61  KRATNVARSNLVVLGTCIGKFTHGGSFHLTVHSLGLLSSNAKHKVWLKPTSEMSFLYGNH 120

Query: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGVAAKSTQDCRKLDPNGIVVLHQSDIGEY 180
           VLKGGLGRITENIAPGDGVVVYSMSDVPLGFG+AAKSTQDCRKLDPNGIVVLHQSDIGEY
Sbjct: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY 180

Query: 181 LRMEDEL 188
           LRMEDEL
Sbjct: 181 LRMEDEL 187

[Close]

BLAST of Lsi05G015330 vs. ExPASy TrEMBL
Match: A0A6J1GYK7 (60S ribosome subunit biogenesis protein NIP7 homolog OS=Cucurbita moschata OX=3662 GN=LOC111458029 PE=3 SV=1)

HSP 1 Score: 372.9 bits (956), Expect = 8.1e-100
Identity = 179/187 (95.72%), Postives = 182/187 (97.33%), Query Frame = 0


Query: 1   MRPLDEQETTVVFEKLHKFTGNNLKNIVENPSHEGTEPNPGRYCFRLHKNKVYYVSDSLV 60
           MRPLDE+ETT VFEKLHKFTGNNLKNIVENPSHEG E NPGRYCFRLHKNKVYYVSDSLV
Sbjct: 1   MRPLDEKETTAVFEKLHKFTGNNLKNIVENPSHEGPELNPGRYCFRLHKNKVYYVSDSLV 60

Query: 61  KRATNVARSNLVALGTCIGKFTHGGSFHLTVHSLGLLSPNAKHKVWLKPTSEMSFLYGNH 120
           KRATNVARSNLVALGTCIGKFTHGGSFHLTVHSLGLL+ NAKHKVWLKPTSEMSFLYGNH
Sbjct: 61  KRATNVARSNLVALGTCIGKFTHGGSFHLTVHSLGLLASNAKHKVWLKPTSEMSFLYGNH 120

Query: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGVAAKSTQDCRKLDPNGIVVLHQSDIGEY 180
           VLKGGLGRITENIAPGDGVVVYSMSDVPLGFG+A KSTQDCRKLDPNGIVVLHQSDIGEY
Sbjct: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIATKSTQDCRKLDPNGIVVLHQSDIGEY 180

Query: 181 LRMEDEL 188
           LRMEDEL
Sbjct: 181 LRMEDEL 187

[Close]

BLAST of Lsi05G015330 vs. ExPASy TrEMBL
Match: A0A6J1C974 (60S ribosome subunit biogenesis protein NIP7 homolog OS=Momordica charantia OX=3673 GN=LOC111009133 PE=3 SV=1)

HSP 1 Score: 372.9 bits (956), Expect = 8.1e-100
Identity = 178/187 (95.19%), Postives = 182/187 (97.33%), Query Frame = 0


Query: 1   MRPLDEQETTVVFEKLHKFTGNNLKNIVENPSHEGTEPNPGRYCFRLHKNKVYYVSDSLV 60
           MRPLDE+ETT VFEKLHKFTGNNL+NIVENPSHEG EPNPGRYCFRLHKNKVYYVSDSLV
Sbjct: 1   MRPLDEKETTAVFEKLHKFTGNNLRNIVENPSHEGPEPNPGRYCFRLHKNKVYYVSDSLV 60

Query: 61  KRATNVARSNLVALGTCIGKFTHGGSFHLTVHSLGLLSPNAKHKVWLKPTSEMSFLYGNH 120
           KRATNVAR NLVALGTCIGK THGGSFHLTV SLGLL+PNAKHKVWLKPTSEMSFLYGNH
Sbjct: 61  KRATNVARRNLVALGTCIGKITHGGSFHLTVQSLGLLAPNAKHKVWLKPTSEMSFLYGNH 120

Query: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGVAAKSTQDCRKLDPNGIVVLHQSDIGEY 180
           VLKGGLGRITENIAPGDGVVVYSMSDVPLGFG+AAKSTQDCRKLDPNGIVVLHQSDIGEY
Sbjct: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY 180

Query: 181 LRMEDEL 188
           LRMEDEL
Sbjct: 181 LRMEDEL 187

[Close]

BLAST of Lsi05G015330 vs. NCBI nr
Match: XP_038878449.1 (60S ribosome subunit biogenesis protein NIP7 homolog [Benincasa hispida])

HSP 1 Score: 384.8 bits (987), Expect = 4.2e-103
Identity = 185/187 (98.93%), Postives = 186/187 (99.47%), Query Frame = 0


Query: 1   MRPLDEQETTVVFEKLHKFTGNNLKNIVENPSHEGTEPNPGRYCFRLHKNKVYYVSDSLV 60
           MRPLDEQETTVVFEKLHKFTGNNLKNIVENPSHEG EPNPGRYCFRLHKNKVYYVSDSLV
Sbjct: 1   MRPLDEQETTVVFEKLHKFTGNNLKNIVENPSHEGPEPNPGRYCFRLHKNKVYYVSDSLV 60

Query: 61  KRATNVARSNLVALGTCIGKFTHGGSFHLTVHSLGLLSPNAKHKVWLKPTSEMSFLYGNH 120
           KRATNVARSNLVALGTCIGKFTHGGSFHLTVHSLGLLSPNAKHKVWLKPTSEMSFLYGNH
Sbjct: 61  KRATNVARSNLVALGTCIGKFTHGGSFHLTVHSLGLLSPNAKHKVWLKPTSEMSFLYGNH 120

Query: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGVAAKSTQDCRKLDPNGIVVLHQSDIGEY 180
           VLKGGLGRITENI+PGDGVVVYSMSDVPLGFGVAAKSTQDCRKLDPNGIVVLHQSDIGEY
Sbjct: 121 VLKGGLGRITENISPGDGVVVYSMSDVPLGFGVAAKSTQDCRKLDPNGIVVLHQSDIGEY 180

Query: 181 LRMEDEL 188
           LRMEDEL
Sbjct: 181 LRMEDEL 187

[Close]

BLAST of Lsi05G015330 vs. NCBI nr
Match: XP_004134205.1 (60S ribosome subunit biogenesis protein NIP7 homolog [Cucumis sativus] >KGN57100.1 hypothetical protein Csa_009928 [Cucumis sativus])

HSP 1 Score: 382.1 bits (980), Expect = 2.7e-102
Identity = 183/187 (97.86%), Postives = 185/187 (98.93%), Query Frame = 0


Query: 1   MRPLDEQETTVVFEKLHKFTGNNLKNIVENPSHEGTEPNPGRYCFRLHKNKVYYVSDSLV 60
           MRPLDEQETTVVFEKLHKFTGNNLKNIVENPSHEGTEPNPGRYCFRLHKNKVYYVSDSLV
Sbjct: 1   MRPLDEQETTVVFEKLHKFTGNNLKNIVENPSHEGTEPNPGRYCFRLHKNKVYYVSDSLV 60

Query: 61  KRATNVARSNLVALGTCIGKFTHGGSFHLTVHSLGLLSPNAKHKVWLKPTSEMSFLYGNH 120
           KRATNVARSNLV+LGTCIGKFTHGGSFHLTV SLGLLSPNAKHKVWLKPTSEMSFLYGNH
Sbjct: 61  KRATNVARSNLVSLGTCIGKFTHGGSFHLTVQSLGLLSPNAKHKVWLKPTSEMSFLYGNH 120

Query: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGVAAKSTQDCRKLDPNGIVVLHQSDIGEY 180
           VLKGGLGRITENI PGDGVVVYSMSDVPLGFG+AAKSTQDCRKLDPNGIVVLHQSDIGEY
Sbjct: 121 VLKGGLGRITENIVPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY 180

Query: 181 LRMEDEL 188
           LRMEDEL
Sbjct: 181 LRMEDEL 187

[Close]

BLAST of Lsi05G015330 vs. NCBI nr
Match: XP_008438877.1 (PREDICTED: 60S ribosome subunit biogenesis protein NIP7 homolog [Cucumis melo])

HSP 1 Score: 379.0 bits (972), Expect = 2.3e-101
Identity = 182/187 (97.33%), Postives = 184/187 (98.40%), Query Frame = 0


Query: 1   MRPLDEQETTVVFEKLHKFTGNNLKNIVENPSHEGTEPNPGRYCFRLHKNKVYYVSDSLV 60
           MRPLDEQETTVVFEKLHKFTGNNLKNIVENPSHEGTEPNPGRYCFRL KNKVYYVSDSLV
Sbjct: 1   MRPLDEQETTVVFEKLHKFTGNNLKNIVENPSHEGTEPNPGRYCFRLQKNKVYYVSDSLV 60

Query: 61  KRATNVARSNLVALGTCIGKFTHGGSFHLTVHSLGLLSPNAKHKVWLKPTSEMSFLYGNH 120
           KRATNVARSNLV+LGTCIGKFTHGGSFHLTV SLGLLSPNAKHKVWLKPTSEMSFLYGNH
Sbjct: 61  KRATNVARSNLVSLGTCIGKFTHGGSFHLTVQSLGLLSPNAKHKVWLKPTSEMSFLYGNH 120

Query: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGVAAKSTQDCRKLDPNGIVVLHQSDIGEY 180
           VLKGGLGRITENI PGDGVVVYSMSDVPLGFG+AAKSTQDCRKLDPNGIVVLHQSDIGEY
Sbjct: 121 VLKGGLGRITENIVPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY 180

Query: 181 LRMEDEL 188
           LRMEDEL
Sbjct: 181 LRMEDEL 187

[Close]

BLAST of Lsi05G015330 vs. NCBI nr
Match: XP_023528444.1 (60S ribosome subunit biogenesis protein NIP7 homolog [Cucurbita pepo subsp. pepo] >XP_023528446.1 60S ribosome subunit biogenesis protein NIP7 homolog [Cucurbita pepo subsp. pepo] >XP_023528447.1 60S ribosome subunit biogenesis protein NIP7 homolog [Cucurbita pepo subsp. pepo] >XP_023528448.1 60S ribosome subunit biogenesis protein NIP7 homolog [Cucurbita pepo subsp. pepo] >XP_023528449.1 60S ribosome subunit biogenesis protein NIP7 homolog [Cucurbita pepo subsp. pepo] >XP_023528450.1 60S ribosome subunit biogenesis protein NIP7 homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 376.7 bits (966), Expect = 1.2e-100
Identity = 181/187 (96.79%), Postives = 183/187 (97.86%), Query Frame = 0


Query: 1   MRPLDEQETTVVFEKLHKFTGNNLKNIVENPSHEGTEPNPGRYCFRLHKNKVYYVSDSLV 60
           MRPLDE+ETT VFEKLHKFTGNNLKNIVENPSHEG  PNPGRYCFRLHKNKVYYVSDSLV
Sbjct: 25  MRPLDEKETTAVFEKLHKFTGNNLKNIVENPSHEGPGPNPGRYCFRLHKNKVYYVSDSLV 84

Query: 61  KRATNVARSNLVALGTCIGKFTHGGSFHLTVHSLGLLSPNAKHKVWLKPTSEMSFLYGNH 120
           KRATNVARSNLVALGTCIGKFTHGGSFHLTVHSLGLLS NAKHKVWLKPTSEMSFLYGNH
Sbjct: 85  KRATNVARSNLVALGTCIGKFTHGGSFHLTVHSLGLLSSNAKHKVWLKPTSEMSFLYGNH 144

Query: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGVAAKSTQDCRKLDPNGIVVLHQSDIGEY 180
           VLKGGLGRITENIAPGDGVVVYSMSDVPLGFG+AAKSTQDCRKLDPNGIVVLHQSDIGEY
Sbjct: 145 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY 204

Query: 181 LRMEDEL 188
           LRMEDEL
Sbjct: 205 LRMEDEL 211

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BLAST of Lsi05G015330 vs. NCBI nr
Match: KAG6582220.1 (60S ribosome subunit biogenesis protein NIP7-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 375.6 bits (963), Expect = 2.6e-100
Identity = 181/187 (96.79%), Postives = 183/187 (97.86%), Query Frame = 0


Query: 1   MRPLDEQETTVVFEKLHKFTGNNLKNIVENPSHEGTEPNPGRYCFRLHKNKVYYVSDSLV 60
           MRPLDE+ETT VFEKLHKFTGNNLKNIVENPSHEG E NPGRYCFRLHKNKVYYVSDSLV
Sbjct: 1   MRPLDEKETTAVFEKLHKFTGNNLKNIVENPSHEGPELNPGRYCFRLHKNKVYYVSDSLV 60

Query: 61  KRATNVARSNLVALGTCIGKFTHGGSFHLTVHSLGLLSPNAKHKVWLKPTSEMSFLYGNH 120
           KRATNVARSNLVALGTCIGKFTHGGSFHLTVHSLGLLS NAKHKVWLKPTSEMSFLYGNH
Sbjct: 61  KRATNVARSNLVALGTCIGKFTHGGSFHLTVHSLGLLSSNAKHKVWLKPTSEMSFLYGNH 120

Query: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGVAAKSTQDCRKLDPNGIVVLHQSDIGEY 180
           VLKGGLGRITENIAPGDGVVVYSMSDVPLGFG+AAKSTQDCRKLDPNGIVVLHQSDIGEY
Sbjct: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY 180

Query: 181 LRMEDEL 188
           LRMEDEL
Sbjct: 181 LRMEDEL 187

[Close]

BLAST of Lsi05G015330 vs. TAIR 10
Match: AT4G15770.1 (RNA binding )

HSP 1 Score: 325.1 bits (832), Expect = 3.7e-89
Identity = 153/187 (81.82%), Postives = 169/187 (90.37%), Query Frame = 0


Query: 1   MRPLDEQETTVVFEKLHKFTGNNLKNIVENPSHEGTEPNPGRYCFRLHKNKVYYVSDSLV 60
           MRPLDE ETTVVFEKL KF GNNLK IVENPS EG E  PG YCFRL KN+VYYVS++LV
Sbjct: 1   MRPLDETETTVVFEKLFKFVGNNLKKIVENPSDEGPESTPGSYCFRLQKNRVYYVSEALV 60

Query: 61  KRATNVARSNLVALGTCIGKFTHGGSFHLTVHSLGLLSPNAKHKVWLKPTSEMSFLYGNH 120
           KRATN++R NLV+ GTCIGK+TH GSFHLT+ SL +L+ NAKHKVWLKPTSEMSFLYGNH
Sbjct: 61  KRATNISRKNLVSFGTCIGKYTHAGSFHLTIMSLNILAANAKHKVWLKPTSEMSFLYGNH 120

Query: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGVAAKSTQDCRKLDPNGIVVLHQSDIGEY 180
           VLKGGLGRIT++I PGDGVVV+SMSDVPLGFG+AAKSTQDCRKLDPNGIVVLHQ+DIGEY
Sbjct: 121 VLKGGLGRITDSIVPGDGVVVFSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQADIGEY 180

Query: 181 LRMEDEL 188
           LR ED+L
Sbjct: 181 LRGEDDL 187

The following BLAST results are available for this feature:

BLAST of Lsi05G015330 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A4QND5	3.8e-62	61.50	60S ribosome subunit biogenesis protein NIP7 homolog OS=Xenopus tropicalis OX=83...	[more]
Q6DFH9	6.4e-62	61.50	60S ribosome subunit biogenesis protein NIP7 homolog OS=Xenopus laevis OX=8355 G...	[more]
Q4T2X8	4.2e-61	59.89	60S ribosome subunit biogenesis protein NIP7 homolog OS=Tetraodon nigroviridis O...	[more]
Q9WV50	9.3e-61	60.96	60S ribosome subunit biogenesis protein NIP7 homolog OS=Rattus norvegicus OX=101...	[more]
Q9Y221	1.6e-60	60.43	60S ribosome subunit biogenesis protein NIP7 homolog OS=Homo sapiens OX=9606 GN=...	[more]

BLAST of Lsi05G015330 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L578	1.3e-102	97.86	60S ribosome subunit biogenesis protein NIP7 homolog OS=Cucumis sativus OX=3659 ...	[more]
A0A1S3AXI3	1.1e-101	97.33	60S ribosome subunit biogenesis protein NIP7 homolog OS=Cucumis melo OX=3656 GN=...	[more]
A0A6J1IQ28	3.6e-100	96.26	60S ribosome subunit biogenesis protein NIP7 homolog OS=Cucurbita maxima OX=3661...	[more]
A0A6J1GYK7	8.1e-100	95.72	60S ribosome subunit biogenesis protein NIP7 homolog OS=Cucurbita moschata OX=36...	[more]
A0A6J1C974	8.1e-100	95.19	60S ribosome subunit biogenesis protein NIP7 homolog OS=Momordica charantia OX=3...	[more]

BLAST of Lsi05G015330 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038878449.1	4.2e-103	98.93	60S ribosome subunit biogenesis protein NIP7 homolog [Benincasa hispida]	[more]
XP_004134205.1	2.7e-102	97.86	60S ribosome subunit biogenesis protein NIP7 homolog [Cucumis sativus] >KGN57100...	[more]
XP_008438877.1	2.3e-101	97.33	PREDICTED: 60S ribosome subunit biogenesis protein NIP7 homolog [Cucumis melo]	[more]
XP_023528444.1	1.2e-100	96.79	60S ribosome subunit biogenesis protein NIP7 homolog [Cucurbita pepo subsp. pepo...	[more]
KAG6582220.1	2.6e-100	96.79	60S ribosome subunit biogenesis protein NIP7-like protein, partial [Cucurbita ar...	[more]

BLAST of Lsi05G015330 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G15770.1	3.7e-89	81.82	RNA binding	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002478	PUA domain	SMART	SM00359	pua_5	coord: 103..178 e-value: 4.1E-17 score: 72.9
None	No IPR available	GENE3D	3.10.450.220		coord: 1..101 e-value: 4.8E-37 score: 127.9
None	No IPR available	PANTHER	PTHR23415:SF4	60S RIBOSOME SUBUNIT BIOGENESIS PROTEIN NIP7 HOMOLOG	coord: 1..187
None	No IPR available	PANTHER	PTHR23415	CYCLIN-DEPENDENT KINASES REGULATORY SUBUNIT/60S RIBOSOME SUBUNIT BIOGENESIS PROTEIN NIP7	coord: 1..187
None	No IPR available	PROSITE	PS50890	PUA	coord: 102..178 score: 14.46877
None	No IPR available	SUPERFAMILY	88802	Pre-PUA domain	coord: 1..101
IPR036974	PUA domain superfamily	GENE3D	2.30.130.10	PUA domain	coord: 102..187 e-value: 8.0E-42 score: 143.0
IPR005155	UPF0113, PUA domain	PFAM	PF03657	UPF0113	coord: 104..182 e-value: 1.3E-21 score: 76.7
IPR016686	Ribosome biogenesis factor, NIP7	PIRSF	PIRSF017190	NIP7	coord: 1..187 e-value: 4.7E-79 score: 262.0
IPR040598	UPF0113, pre-PUA domain	PFAM	PF17833	UPF0113_N	coord: 2..90 e-value: 8.8E-24 score: 83.8
IPR015947	PUA-like superfamily	SUPERFAMILY	88697	PUA domain-like	coord: 103..178

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi05G015330.1	Lsi05G015330.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042273	ribosomal large subunit biogenesis
biological_process	GO:0042255	ribosome assembly
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0030687	preribosome, large subunit precursor
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003723	RNA binding