Lsi05G014480 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi05G014480
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	outer envelope membrane protein 7
Location	chr05: 22353222 .. 22354756 (-)
RNA-Seq Expression	Lsi05G014480
Synteny	Lsi05G014480

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGGAAACGGCGAAGTTGAATGCGGCGAGGTCCGGCTTGGTGGTGATCGGAGCTCTGGCCTTCGGATACCTGAGTTTACAGCTCGTGTTCAAGCCCTACCTCGAGAAAACTCAAAGTTCTCTTCAACATCCCGATTCTGAGCCCTCTACAATTCCAAAAGACGGTATTTCAAACCGCGACGATTAAGCTCAATCTTCACTGTTTTGGCTCGGTATGTATAAATTTAGCTTAGTGAGAATGACGCTTTAGAGATTACCTGGAAATTTCTCAGTTTCAAGAGATCTTGAGAAACAGGAGATGGATTCATTGCTAATATTTCACTATTCTTTTTTCCTTCTGTTTCATGATGTTCAGATTAATGGTTCGTTAGATGATGATATTGAATTTATTCTCCATGATAGTTACTAGTTTGGAAGAAATCTGAGCTTTCTTTCTTGGAAGGGTTCTTATCTGGAATGACTTGCCACCAACTATAGTTTCTGATTTGTCTGTGTCTCAAGACTCTCAACCACAGTTTTTAAGTTTTTTTCTTTCTTTTTATCATTGATTGGTATCTTATTGAATATAATTGGTGACATTTGCTTCAATCTCCCTAATACAGAAAAGGTTTTGTACATCTTGTTCATATACATTCTGTTGGAGGAATTACAGATAAATGAGAAAATTGAAGTAAATATTAAGGAGAAAAAACAACTCTAAACAATTTGGTTGATCGGGTGTATCTCACTCTCTTTAAGCTTTTTTGCAATGTGTATTGTTTTTGTTTATTTCAATCATTGCTGCAACATAGGGAACTTTGGCTTGTCCATTCAAGATATAACAACTTAACTGAAACCTTGTATAGCTCAAACTATAATGTACTAAAGGTCAAGATCAAAACTCCAAAATTTGAAACACCTCTCTTTTGGCTAATTGTTTTAGAGAGAAAGTAAAGAGAAAAGAAGATTGAAAGTATTGGATTTGTTGTTGTTATTTTGAAAGTAAGGTAAGAGGGTATTTATAGAAGAATTTTAGATCTTAAACCTTTAATACAAACTTAAGTAACTAAATTATAATCTCTTAACCTTTCTTACAAATAAGTTTTTACCCAATTTGATAAAGGAAATAACATCTTTTAACTTACTTCCTCAGTTCCTCATTTAAGTTTAGTTAAAACTTTTATAGTGAATAAAAGAAAATATTAAAAATGTTACAACACATTCCCTTTGTTTCTCTTTCTCAAGCATCTGAGTTCGAAAAGGATCTTTTAAGATTCATCAAAAGTGATTGAGTTGCAAAAACTTCTAGATAGCTTTATCACTCTCTTTTAGCATCCATCGTTGTCTTTCAAAATACTGGATTTAGTAATGTGGTTGCACCAAGCTCCCTTTGACCACTTCCCTTGTTTGCACTTAGAATGTTGGAATACAGCTAAGATGCCGAGTTCAAAATGTGGGTGTTGTAGATCACAGGAACTAATCACCAAACCACTTCCAAGTCTACCGAAGTTGGTCGTCTTGGGCCGGTGTGTCTCCCAGGAGAATAGCGCCTAG

mRNA sequence

ATGAAGGAAACGGCGAAGTTGAATGCGGCGAGGTCCGGCTTGGTGGTGATCGGAGCTCTGGCCTTCGGATACCTGAGTTTACAGCTCGTGTTCAAGCCCTACCTCGAGAAAACTCAAAGTTCTCTTCAACATCCCGATTCTGAGCCCTCTACAATTCCAAAAGACGCTAAGATGCCGAGTTCAAAATGTGGGTGTTGTAGATCACAGGAACTAATCACCAAACCACTTCCAAGTCTACCGAAGTTGGTCGTCTTGGGCCGGTGTGTCTCCCAGGAGAATAGCGCCTAG

Coding sequence (CDS)

ATGAAGGAAACGGCGAAGTTGAATGCGGCGAGGTCCGGCTTGGTGGTGATCGGAGCTCTGGCCTTCGGATACCTGAGTTTACAGCTCGTGTTCAAGCCCTACCTCGAGAAAACTCAAAGTTCTCTTCAACATCCCGATTCTGAGCCCTCTACAATTCCAAAAGACGCTAAGATGCCGAGTTCAAAATGTGGGTGTTGTAGATCACAGGAACTAATCACCAAACCACTTCCAAGTCTACCGAAGTTGGTCGTCTTGGGCCGGTGTGTCTCCCAGGAGAATAGCGCCTAG

Protein sequence

MKETAKLNAARSGLVVIGALAFGYLSLQLVFKPYLEKTQSSLQHPDSEPSTIPKDAKMPSSKCGCCRSQELITKPLPSLPKLVVLGRCVSQENSA

Homology

[Close]

BLAST of Lsi05G014480 vs. ExPASy TrEMBL
Match: A0A0A0L5N1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G149930 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 2.1e-19
Identity = 53/56 (94.64%), Postives = 54/56 (96.43%), Query Frame = 0


Query: 1  MKETAKLNAARSGLVVIGALAFGYLSLQLVFKPYLEKTQSSLQHPDSEPSTIPKDA 57
          MKETAKLNAARSGLVVIGALAFGYLSLQLVFKPYLEK QSSLQHP+ EPSTIPKDA
Sbjct: 1  MKETAKLNAARSGLVVIGALAFGYLSLQLVFKPYLEKAQSSLQHPEPEPSTIPKDA 56

[Close]

BLAST of Lsi05G014480 vs. ExPASy TrEMBL
Match: A0A5A7U4W2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G00160 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 2.2e-16
Identity = 49/56 (87.50%), Postives = 51/56 (91.07%), Query Frame = 0


Query: 1  MKETAKLNAARSGLVVIGALAFGYLSLQLVFKPYLEKTQSSLQHPDSEPSTIPKDA 57
          MKETAKLNAARSGLVVIGALAFGYLSLQ+ FKPYLEK QS LQHP+ EPSTI KDA
Sbjct: 1  MKETAKLNAARSGLVVIGALAFGYLSLQVGFKPYLEKAQSYLQHPEPEPSTILKDA 56

[Close]

BLAST of Lsi05G014480 vs. ExPASy TrEMBL
Match: A0A4D9A3A6 (Uncharacterized protein OS=Salvia splendens OX=180675 GN=Saspl_033849 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 2.2e-08
Identity = 36/55 (65.45%), Postives = 40/55 (72.73%), Query Frame = 0


Query: 1  MKETAKLNAARSGLVVIGALAFGYLSLQLVFKPYLEKTQSSLQHPDSEPSTIPKD 56
          M+ TAK NA RSGLVVIGALAFGYL+L L FKPYLEK Q   QH  +  S+ P D
Sbjct: 1  MRGTAKANAMRSGLVVIGALAFGYLTLHLGFKPYLEKAQLEQQHQSAAASSQPVD 55

[Close]

BLAST of Lsi05G014480 vs. ExPASy TrEMBL
Match: W9R337 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_007349 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 6.3e-08
Identity = 30/51 (58.82%), Postives = 42/51 (82.35%), Query Frame = 0


Query: 1  MKETAKLNAARSGLVVIGALAFGYLSLQLVFKPYLEKTQSSLQHPDSEPST 52
          M++  K+NA RSG+VV+GA+AFGYL+L L FKP+LEK Q S++H  S+PS+
Sbjct: 1  MRDRRKMNAMRSGVVVVGAMAFGYLTLYLGFKPFLEKAQLSVEHSQSQPSS 51

[Close]

BLAST of Lsi05G014480 vs. ExPASy TrEMBL
Match: A0A1U7Y866 (uncharacterized protein LOC104242143 OS=Nicotiana sylvestris OX=4096 GN=LOC104242143 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.4e-07
Identity = 33/49 (67.35%), Postives = 42/49 (85.71%), Query Frame = 0


Query: 1  MKETAKLNAARSGLVVIGALAFGYLSLQLVFKPYLEKTQS--SLQHPDS 48
          M++T K+ A RSGLVVIGA+AFGYL+LQL+FKP+LEKTQS  +L H +S
Sbjct: 1  MRDTTKMKALRSGLVVIGAVAFGYLNLQLMFKPFLEKTQSQQALLHSES 49

[Close]

BLAST of Lsi05G014480 vs. NCBI nr
Match: KGN57013.1 (hypothetical protein Csa_010432 [Cucumis sativus])

HSP 1 Score: 104.8 bits (260), Expect = 4.3e-19
Identity = 53/56 (94.64%), Postives = 54/56 (96.43%), Query Frame = 0


Query: 1  MKETAKLNAARSGLVVIGALAFGYLSLQLVFKPYLEKTQSSLQHPDSEPSTIPKDA 57
          MKETAKLNAARSGLVVIGALAFGYLSLQLVFKPYLEK QSSLQHP+ EPSTIPKDA
Sbjct: 1  MKETAKLNAARSGLVVIGALAFGYLSLQLVFKPYLEKAQSSLQHPEPEPSTIPKDA 56

[Close]

BLAST of Lsi05G014480 vs. NCBI nr
Match: KAG7018683.1 (hypothetical protein SDJN02_20554, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 101.7 bits (252), Expect = 3.6e-18
Identity = 51/56 (91.07%), Postives = 52/56 (92.86%), Query Frame = 0


Query: 1  MKETAKLNAARSGLVVIGALAFGYLSLQLVFKPYLEKTQSSLQHPDSEPSTIPKDA 57
          MKE AKLNA RSG+VVIGALAFGYLSL LVFKPYLEK QSSLQHPDSEPSTIPKDA
Sbjct: 34 MKEAAKLNAVRSGVVVIGALAFGYLSLHLVFKPYLEKAQSSLQHPDSEPSTIPKDA 89

[Close]

BLAST of Lsi05G014480 vs. NCBI nr
Match: KAG6582279.1 (hypothetical protein SDJN03_22281, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 98.2 bits (243), Expect = 4.0e-17
Identity = 49/56 (87.50%), Postives = 51/56 (91.07%), Query Frame = 0


Query: 1  MKETAKLNAARSGLVVIGALAFGYLSLQLVFKPYLEKTQSSLQHPDSEPSTIPKDA 57
          MKE AKLNA RSG+VVIGALAFGYLSL LVFKPYLEK Q SLQHP+SEPSTIPKDA
Sbjct: 11 MKEAAKLNAVRSGVVVIGALAFGYLSLHLVFKPYLEKAQGSLQHPNSEPSTIPKDA 66

[Close]

BLAST of Lsi05G014480 vs. NCBI nr
Match: KAA0049387.1 (hypothetical protein E6C27_scaffold171G006320 [Cucumis melo var. makuwa] >TYK17172.1 hypothetical protein E5676_scaffold434G00160 [Cucumis melo var. makuwa])

HSP 1 Score: 94.7 bits (234), Expect = 4.4e-16
Identity = 49/56 (87.50%), Postives = 51/56 (91.07%), Query Frame = 0


Query: 1  MKETAKLNAARSGLVVIGALAFGYLSLQLVFKPYLEKTQSSLQHPDSEPSTIPKDA 57
          MKETAKLNAARSGLVVIGALAFGYLSLQ+ FKPYLEK QS LQHP+ EPSTI KDA
Sbjct: 1  MKETAKLNAARSGLVVIGALAFGYLSLQVGFKPYLEKAQSYLQHPEPEPSTILKDA 56

[Close]

BLAST of Lsi05G014480 vs. NCBI nr
Match: XP_042939644.1 (outer envelope membrane protein 7 [Carya illinoinensis] >KAG2727424.1 hypothetical protein I3760_01G157400 [Carya illinoinensis] >KAG6668308.1 hypothetical protein CIPAW_01G161200 [Carya illinoinensis] >KAG6732085.1 hypothetical protein I3842_01G159800 [Carya illinoinensis] >KAG7996299.1 hypothetical protein I3843_01G152500 [Carya illinoinensis])

HSP 1 Score: 68.6 bits (166), Expect = 3.4e-08
Identity = 35/52 (67.31%), Postives = 43/52 (82.69%), Query Frame = 0


Query: 1  MKETAKLNAARSGLVVIGALAFGYLSLQLVFKPYLEKTQSSLQ--HPDSEPS 51
          MK+TAK+NA RSG+VV+GALAFGYL+LQL FKP+LEK Q +L+   P S PS
Sbjct: 1  MKQTAKMNAIRSGIVVVGALAFGYLTLQLGFKPFLEKAQETLEKSDPPSPPS 52

[Close]

BLAST of Lsi05G014480 vs. TAIR 10
Match: AT5G19151.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 52.4 bits (124), Expect = 2.4e-07
Identity = 29/55 (52.73%), Postives = 36/55 (65.45%), Query Frame = 0


Query: 1  MKETAKLNAARSGLVVIGALAFGYLSLQLVFKPYLEKT-------QSSLQHPDSE 49
          MK T   NA RS +VV+G+LAFGYLSL+L +KP+LEK        QSS QH   +
Sbjct: 1  MKRTVMDNAIRSSVVVLGSLAFGYLSLELGYKPFLEKAEQYERSLQSSQQHQQQD 55

[Close]

BLAST of Lsi05G014480 vs. TAIR 10
Match: AT3G63160.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast outer membrane, thylakoid, chloroplast thylakoid membrane, chloroplast, chloroplast envelope; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: outer envelope membrane protein 7 (TAIR:AT3G52420.1); Has 26 Blast hits to 26 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 42.7 bits (99), Expect = 1.9e-04
Identity = 19/43 (44.19%), Postives = 30/43 (69.77%), Query Frame = 0


Query: 11 RSGLVVIGALAFGYLSLQLVFKPYLEKTQSSLQHPDSEPSTIP 54
          ++  VV+G LA G+L+++LVFKP  +K  SS    DS+ +T+P
Sbjct: 22 QTATVVVGVLAVGWLAIELVFKPLFKKLSSSKDKSDSDDATVP 64

[Close]

BLAST of Lsi05G014480 vs. TAIR 10
Match: AT3G52420.1 (outer envelope membrane protein 7 )

HSP 1 Score: 40.8 bits (94), Expect = 7.1e-04
Identity = 21/61 (34.43%), Postives = 36/61 (59.02%), Query Frame = 0


Query: 6  KLNAARSGLVVIGALAFGYLSLQLVFKPYLEKTQSSL--QHPDSEPSTIPKDAKMPSSKC 65
          K + A+   VV+ A+A G+L++++ FKP+L+K +SS+    P  +P      A   +SK 
Sbjct: 3  KTSGAKQATVVVAAMALGWLAIEIAFKPFLDKFRSSIDKSDPTKDPDDFDTAATATTSKE 62

The following BLAST results are available for this feature:

BLAST of Lsi05G014480 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi05G014480 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L5N1	2.1e-19	94.64	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G149930 PE=4 SV=1	[more]
A0A5A7U4W2	2.2e-16	87.50	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A4D9A3A6	2.2e-08	65.45	Uncharacterized protein OS=Salvia splendens OX=180675 GN=Saspl_033849 PE=4 SV=1	[more]
W9R337	6.3e-08	58.82	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_007349 PE=4 SV=1	[more]
A0A1U7Y866	1.4e-07	67.35	uncharacterized protein LOC104242143 OS=Nicotiana sylvestris OX=4096 GN=LOC10424...	[more]

BLAST of Lsi05G014480 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN57013.1	4.3e-19	94.64	hypothetical protein Csa_010432 [Cucumis sativus]	[more]
KAG7018683.1	3.6e-18	91.07	hypothetical protein SDJN02_20554, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6582279.1	4.0e-17	87.50	hypothetical protein SDJN03_22281, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAA0049387.1	4.4e-16	87.50	hypothetical protein E6C27_scaffold171G006320 [Cucumis melo var. makuwa] >TYK171...	[more]
XP_042939644.1	3.4e-08	67.31	outer envelope membrane protein 7 [Carya illinoinensis] >KAG2727424.1 hypothetic...	[more]

BLAST of Lsi05G014480 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G19151.1	2.4e-07	52.73	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT3G63160.1	1.9e-04	44.19	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]
AT3G52420.1	7.1e-04	34.43	outer envelope membrane protein 7	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 40..60
None	No IPR available	PANTHER	PTHR33982:SF4	OS05G0532800 PROTEIN	coord: 1..57
IPR038944	Outer envelope membrane protein 7-like	PANTHER	PTHR33982	OUTER ENVELOPE MEMBRANE PROTEIN 7-RELATED	coord: 1..57

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi05G014480.1	Lsi05G014480.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane